Citrus Sinensis ID: 027709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHccccccccEccccHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnlscrfymrdglmtssvhdmsdnsdadeqrkhpesqlqsstpamgmshpsittpnvqyathqvgaghamapaaypypdpyyrsifapydaqpyppqpyggqpmvHLQLMGIqqagvplptdaveepvfvnAKQYHGILRRRQSRAKAESENKVlksrkpylhesRHLHALRRArgcggrflnskknenqqkgmasddksqsnlnlnsdkneiassdrqs
Flexible Loop (DISEMBL)
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHpesqlqsstpamGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKqyhgilrrrqsrakaesenkvlksrkpylhesrhlHALRRARGCGGRFLNSKknenqqkgmasddksqsnlnlnsdkneiassdrqs
Low Complexity Region (SEG)
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHamapaaypypdpyyRSIFapydaqpyppqpyggqpMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Disordered region (IsUnstruct)
********************************************************VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL*********************************************************************************
Disordered Region (DISOPRED)
*********************************************************************************YRS******************************************PVFVNAKQYHGILRRRQS****************************************************************************
Disordered Region (DISEMBL)
MNLSCRFYMRDGLMTSSVH****************************SHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHG*****************LKSRKPYLHESRHLHALRRARGCGGRFLNSKKN****************LNLNSDKN*********
Disordered Region (DISPRO)
*******************************************************NVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRAR*CG*RFL**************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q84JP1	190	Nuclear transcription fac	yes	no	0.845	0.978	0.586	2e-58
Q8VY64	198	Nuclear transcription fac	no	no	0.854	0.949	0.531	2e-52
Q945M9	303	Nuclear transcription fac	no	no	0.804	0.584	0.399	2e-30
Q9SYH4	308	Nuclear transcription fac	no	no	0.418	0.298	0.623	2e-28
Q93ZH2	340	Nuclear transcription fac	no	no	0.613	0.397	0.450	2e-28
Q9LXV5	272	Nuclear transcription fac	no	no	0.640	0.518	0.433	6e-27
Q9LNP6	328	Nuclear transcription fac	no	no	0.468	0.314	0.521	2e-26
Q9LVJ7	308	Nuclear transcription fac	no	no	0.445	0.318	0.57	8e-26
Q8LFU0	269	Nuclear transcription fac	no	no	0.640	0.524	0.378	2e-20
Q54S29	517	Nuclear transcription fac	yes	no	0.277	0.117	0.704	3e-19

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 152/203 (74%), Gaps = 17/203 (8%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T ++ Y+    G  ++MAP 
Sbjct: 1   MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVT-SLVYS--DPGTTNSMAPG 56

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 133
            YPYPDPYYRSIFAP      PPQPY G   VHLQLMG+QQ GVPLP+DAVEEPVFVNAK
Sbjct: 57  QYPYPDPYYRSIFAP------PPQPYTG---VHLQLMGVQQQGVPLPSDAVEEPVFVNAK 107

Query: 134 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 193
           QYHGILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA+RR RGCGGRFLN+KK +   + 
Sbjct: 108 QYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHED 167

Query: 194 MASDDKSQSNLNLNSDKNEIASS 216
            + ++KS    NL++ K+ +A+S
Sbjct: 168 SSHEEKS----NLSAGKSAMAAS 186

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/207 (53%), Positives = 147/207 (71%), Gaps = 19/207 (9%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSSVH++SDN+++  +++ P+SQ +   P+ G S  SI T +V            MA  
Sbjct: 1   MTSSVHELSDNNESHAKKERPDSQTRPQVPS-GRSSESIDTNSVY--------SEPMAHG 51

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 133
            YPYPDPYYRS+FA    Q Y P PY   P V LQLMG+QQ GVPL  DAVEEPVFVNAK
Sbjct: 52  LYPYPDPYYRSVFA---QQAYLPHPY---PGVQLQLMGMQQPGVPLQCDAVEEPVFVNAK 105

Query: 134 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK----NEN 189
           QYHGILRRRQSRAK E+ N+ +K++KPY+HESRHLHA+RR RGCGGRFLN+KK    ++ 
Sbjct: 106 QYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKE 165

Query: 190 QQKGMASDDKSQSNLNLNSDKNEIASS 216
           +++  + ++ S+++ +L S+K  +A+S
Sbjct: 166 EEEATSDENTSEASSSLRSEKLAMATS 192

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 113/213 (53%), Gaps = 36/213 (16%)

Query: 10  RDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHA 69
           ++  +T+S     D SD +++  H            G++ P    P+ Q   H VG    
Sbjct: 79  KESQVTTSPQSAGDYSDKNQESLH-----------HGITQP---PPHPQLVGHTVGWA-- 122

Query: 70  MAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVF 129
              ++ PY DPYY  +   Y   P    PYGG P   +          PLP +  +EPVF
Sbjct: 123 ---SSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRM----------PLPPEMAQEPVF 169

Query: 130 VNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNEN 189
           VNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA+RR RG GGRF  +KK   
Sbjct: 170 VNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNT 227

Query: 190 QQKGMASDDKS-----QSNLNLNSDKNEIASSD 217
           +     +++KS     QS  + NSD+ E  + D
Sbjct: 228 EASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 106 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 164
           HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHE
Sbjct: 157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHE 216

Query: 165 SRHLHALRRARGCGGRFLNSKKNENQQKGMASD 197
           SRHLHAL+RARG GGRFLN+KK +     + S 
Sbjct: 217 SRHLHALKRARGSGGRFLNTKKLQESSNSLCSS 249

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 16/151 (10%)

Query: 55  PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ 114
           PN+ +A        A A  ++ Y DP+Y  + A      Y PQ     P  + Q++ +  
Sbjct: 122 PNIHFAP-------AQANFSFHYADPHYGGLLAA----TYLPQA----PTCNPQMVSMIP 166

Query: 115 AGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRR 173
             VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RKPYLHESRH+HAL+R
Sbjct: 167 GRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKR 226

Query: 174 ARGCGGRFLNSKKNENQQKGMASDDKSQSNL 204
            RG GGRFLN+KK   + +  A+ ++ Q  L
Sbjct: 227 PRGSGGRFLNTKKLLQESEQAAAREQEQDKL 257

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 87/157 (55%), Gaps = 16/157 (10%)

Query: 66  AGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVE 125
            GH +A    PY DPYY  +   Y  Q    +PY          +G+ +    LP D  +
Sbjct: 122 VGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPY----------LGMPRERTALPLDMAQ 171

Query: 126 EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSK 185
           EPV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH HA+RRAR  GGRF    
Sbjct: 172 EPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKS 231

Query: 186 KNENQQKGMASDDKSQSNLN------LNSDKNEIASS 216
           + E  +     D +  S  N      + +D NE  +S
Sbjct: 232 EVEAGEDAGGRDRERGSATNSSGSEQVETDSNETLNS 268

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 14/117 (11%)

Query: 71  APAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVE-EPVF 129
           A  ++ Y DP++  +        Y PQ     P         Q   VPLP D +E EPVF
Sbjct: 129 ANFSFHYADPHFGGLMPA----AYLPQATIWNP---------QMTRVPLPFDLIENEPVF 175

Query: 130 VNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK 186
           VNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL+R RG GGRFLN+KK
Sbjct: 176 VNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKK 232

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 2/100 (2%)

Query: 98  PYGGQPMV-HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVL 155
           PY  Q  V H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++
Sbjct: 141 PYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLI 200

Query: 156 KSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMA 195
           K RKPYLHESRHLHAL+R RG GGRFLN+KK++     ++
Sbjct: 201 KVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLS 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 23/164 (14%)

Query: 57  VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAG 116
           +Q A  + G    M    +P+ + YY  + A      Y  Q   G+ M+ L+ M  ++ G
Sbjct: 82  MQSACFEFGFAQPMMYTKHPHVEQYYGVVSA------YGSQRSSGRVMIPLK-METEEDG 134

Query: 117 VPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARG 176
                      ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR RG
Sbjct: 135 T----------IYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRG 181

Query: 177 CGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 220
            GGRFLN+K  +  ++   S+ +S    +    +NE  +S R++
Sbjct: 182 SGGRFLNTKTADAAKQSKPSNSQSSEVFH---PENETINSSREA 222

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query: 122 DAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 181
           + VEEP++VNAKQY+ IL+RR +RAK ESENK+ K+RK Y HESRH HA+RR RGCGGRF
Sbjct: 225 EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRGCGGRF 284

Query: 182 L 182
           L
Sbjct: 285 L 285

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
225444037	208	PREDICTED: nuclear transcription factor	0.940	0.995	0.826	3e-94
224113655	208	predicted protein [Populus trichocarpa]	0.940	0.995	0.812	4e-94
255564393	213	Nuclear transcription factor Y subunit A	0.940	0.971	0.774	2e-83
449433674	202	PREDICTED: nuclear transcription factor	0.913	0.995	0.794	6e-80
356555881	205	PREDICTED: nuclear transcription factor	0.927	0.995	0.754	1e-76
449490734	201	PREDICTED: nuclear transcription factor	0.904	0.990	0.777	1e-76
224056517	205	predicted protein [Populus trichocarpa]	0.868	0.931	0.790	2e-76
255638418	206	unknown [Glycine max]	0.918	0.980	0.706	3e-76
356533053	219	PREDICTED: nuclear transcription factor	0.981	0.986	0.710	8e-76
356533051	204	PREDICTED: nuclear transcription factor	0.918	0.990	0.752	2e-75

>gi|225444037|ref|XP_002282043.1| PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera] gi|297740816|emb|CBI30998.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/208 (82%), Positives = 186/208 (89%), Gaps = 1/208 (0%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 72
           MTSSVHD+SDNS+ADE +KH E Q+QSS+PA G SHP     N+ YAT  Q+GAGHAMA 
Sbjct: 1   MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQ 60

Query: 73  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 132
           AAYPYPDPYYRSIFAPYDAQPYP Q Y GQPMVHLQLMGIQQAGVPLP+DAVEEPVFVNA
Sbjct: 61  AAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNA 120

Query: 133 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 192
           KQYHGILRRRQSRAKAESENKV+KSRKPYLHESRHLHALRRARGCGGRFLNSKKNE++Q 
Sbjct: 121 KQYHGILRRRQSRAKAESENKVVKSRKPYLHESRHLHALRRARGCGGRFLNSKKNESEQN 180

Query: 193 GMASDDKSQSNLNLNSDKNEIASSDRQS 220
            +AS DKSQSN+NLNSDKNE+ASSD  S
Sbjct: 181 EVASGDKSQSNINLNSDKNELASSDSTS 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113655|ref|XP_002332527.1| predicted protein [Populus trichocarpa] gi|222832639|gb|EEE71116.1| predicted protein [Populus trichocarpa]

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 169/208 (81%), Positives = 188/208 (90%), Gaps = 1/208 (0%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSSVHD+SDNS+A EQ+KH E Q+Q+S+PA  ++HP I+ PN QYAT Q+GAGHAMAPA
Sbjct: 1   MTSSVHDLSDNSEAGEQQKHSEPQVQTSSPANALAHPGISPPNFQYATPQLGAGHAMAPA 60

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 133
           AYPYPDPYYRSIFAP DAQPY PQPYG QPMVHLQLMGIQQAGVPLP+DAVEEPVFVNAK
Sbjct: 61  AYPYPDPYYRSIFAPCDAQPYAPQPYGAQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAK 120

Query: 134 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK- 192
           QYHGILRRRQSRAKAESENK +KSRKPYLHESRH HAL+RARGCGGRFLNSKK ENQQ+ 
Sbjct: 121 QYHGILRRRQSRAKAESENKAIKSRKPYLHESRHQHALKRARGCGGRFLNSKKKENQQQN 180

Query: 193 GMASDDKSQSNLNLNSDKNEIASSDRQS 220
           GMA  DKSQSN+NLN++KN+IAS D +S
Sbjct: 181 GMAPGDKSQSNVNLNANKNDIASLDDKS 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564393|ref|XP_002523193.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis] gi|223537600|gb|EEF39224.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 179/213 (84%), Gaps = 6/213 (2%)

Query: 14  MTSSVHDMSDNSDADEQR-KHPESQLQSSTPAMGMSHPSITTPNVQYATHQ----VGAGH 68
           MTSSVHD SDNSDA+EQ+ K  E+Q QSS PA  M HP I+TPN  Y T +      A  
Sbjct: 1   MTSSVHDHSDNSDANEQQQKLSETQNQSSPPATAMVHPGISTPNAHYTTSRQLGSGHAMA 60

Query: 69  AMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPV 128
           A   AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLP+D VEEPV
Sbjct: 61  AGGAAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDTVEEPV 120

Query: 129 FVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNE 188
           FVNAKQYHGILRRRQSRAKAESENKV+KSRKPYLHESRH HALRRARG GGRFLN+KKN+
Sbjct: 121 FVNAKQYHGILRRRQSRAKAESENKVIKSRKPYLHESRHQHALRRARGLGGRFLNAKKNQ 180

Query: 189 NQ-QKGMASDDKSQSNLNLNSDKNEIASSDRQS 220
           +Q Q  MAS DKSQSN+NLNSDK++I SSD +S
Sbjct: 181 HQEQNEMASGDKSQSNINLNSDKSDIVSSDGKS 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433674|ref|XP_004134622.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Cucumis sativus] gi|449433676|ref|XP_004134623.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Cucumis sativus]

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 162/204 (79%), Positives = 177/204 (86%), Gaps = 3/204 (1%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSSVHD SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P 
Sbjct: 1   MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPP 57

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 133
           AYPYPDPYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK
Sbjct: 58  AYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 117

Query: 134 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 193
           QYHGILRRRQSRAKAESENK LKSRKPYLHESRHLHALRRARGCGGRFL S KNEN Q  
Sbjct: 118 QYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNE 177

Query: 194 MASDDKSQSNLNLNSDKNEIASSD 217
           +AS DKSQ N+NLNSD++++ASS+
Sbjct: 178 VASGDKSQPNINLNSDRSDLASSE 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555881|ref|XP_003546258.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max] gi|356555883|ref|XP_003546259.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 173/208 (83%), Gaps = 4/208 (1%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 72
           MT+S  D+SDN   ++Q+  P+ Q  S   A G+SH  I T NVQYAT  Q+G GHA+ P
Sbjct: 1   MTTSTRDISDNEADEQQQSEPQMQHLS---ANGISHAGIGTQNVQYATPPQLGTGHAVVP 57

Query: 73  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 132
             YPYPDPYYRSIFAPYDAQ YPPQPYGG PMVHLQLMGIQQAGVPLPTD VEEPVFVNA
Sbjct: 58  PTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNA 117

Query: 133 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 192
           KQYHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGGRFLNSKK+ENQQ 
Sbjct: 118 KQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQD 177

Query: 193 GMASDDKSQSNLNLNSDKNEIASSDRQS 220
            +AS D+SQSN+NLNSDKNE+A SDR S
Sbjct: 178 EVASTDESQSNINLNSDKNELAPSDRTS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490734|ref|XP_004158691.1| PREDICTED: nuclear transcription factor Y subunit A-7-like, partial [Cucumis sativus]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/202 (77%), Positives = 173/202 (85%), Gaps = 3/202 (1%)

Query: 16  SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAY 75
           +S  D SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P AY
Sbjct: 2   ASETDCSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPPAY 58

Query: 76  PYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQY 135
           PYPDPYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQY
Sbjct: 59  PYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQY 118

Query: 136 HGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMA 195
           HGILRRRQSRAKAESENK LKSRKPYLHESRHLHALRRARGCGGRFL S KNEN Q  +A
Sbjct: 119 HGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVA 178

Query: 196 SDDKSQSNLNLNSDKNEIASSD 217
           S DKSQ N+NLNSD++++ASS+
Sbjct: 179 SGDKSQPNINLNSDRSDLASSE 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056517|ref|XP_002298891.1| predicted protein [Populus trichocarpa] gi|222846149|gb|EEE83696.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 5/196 (2%)

Query: 6   RFYMRDGL----MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYAT 61
           RF   D +    MTSS+HD+SDNS+ADEQ+   E Q+QSS+PAM  +HP  +TPNVQYAT
Sbjct: 2   RFEFGDSVCITAMTSSLHDLSDNSEADEQQNESEPQIQSSSPAMAQAHPGFSTPNVQYAT 61

Query: 62  HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPT 121
            Q+GAGHAMAPA YPYPDPYYRSIFAPYD QPYPPQPYG QPMVHLQLMGIQQAGVPLP+
Sbjct: 62  PQLGAGHAMAPATYPYPDPYYRSIFAPYDPQPYPPQPYGAQPMVHLQLMGIQQAGVPLPS 121

Query: 122 DAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 181
           DAVEEPVFVNAKQYHGILRRRQSRAKAESE+K +KSRKPYLHESRH HAL+RARGCGGRF
Sbjct: 122 DAVEEPVFVNAKQYHGILRRRQSRAKAESESKAIKSRKPYLHESRHQHALKRARGCGGRF 181

Query: 182 LNSKKNENQQ-KGMAS 196
           LNSKK ENQ+  G+AS
Sbjct: 182 LNSKKQENQEHNGVAS 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638418|gb|ACU19519.1| unknown [Glycine max]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/208 (70%), Positives = 167/208 (80%), Gaps = 6/208 (2%)

Query: 16  SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNV--QYAT-HQVGAGHAMAP 72
           +S HD++DN D  +Q+   ES +Q  +   G+S P I+T NV  QYA   Q+G GHAM P
Sbjct: 2   TSAHDLTDNEDDGQQQS--ESPMQPPS-VNGISDPGISTQNVNVQYAAPGQLGTGHAMVP 58

Query: 73  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 132
             YPYPDPYYRSIFAPYD QPYPPQ Y GQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA
Sbjct: 59  HVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 118

Query: 133 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 192
           KQYHGILRRRQ RAKAESENK++++RKPYLHESRH HAL R RGCGGRFLNSKK +NQ  
Sbjct: 119 KQYHGILRRRQYRAKAESENKIIRNRKPYLHESRHKHALTRPRGCGGRFLNSKKAKNQND 178

Query: 193 GMASDDKSQSNLNLNSDKNEIASSDRQS 220
            +AS DKSQSN+N+N +KN+  SSDR S
Sbjct: 179 DVASADKSQSNININFNKNDQTSSDRAS 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533053|ref|XP_003535083.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 180/221 (81%), Gaps = 5/221 (2%)

Query: 1   MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYA 60
           ++     ++   +MTS+ HD+SDN   D+Q+   ESQ++  + A G+S+  I T NVQYA
Sbjct: 3   VDWDTVLHVNQEIMTST-HDLSDNEADDQQQS--ESQMEPLS-ANGISYAGIATQNVQYA 58

Query: 61  T-HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPL 119
           T  Q+G GHA+ P  YPYPDPYYRSIFAPYDAQ YPPQPYGG PMVHLQLMGIQQAGVPL
Sbjct: 59  TPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPL 118

Query: 120 PTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGG 179
           PTD VEEPVFVNAKQYHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGG
Sbjct: 119 PTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGG 178

Query: 180 RFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 220
           RFLNSKK+ENQQ  +AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 179 RFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533051|ref|XP_003535082.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 173/206 (83%), Gaps = 4/206 (1%)

Query: 16  SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYAT-HQVGAGHAMAPAA 74
           +S HD+SDN   D+Q+   ESQ++  + A G+S+  I T NVQYAT  Q+G GHA+ P  
Sbjct: 2   TSTHDLSDNEADDQQQS--ESQMEPLS-ANGISYAGIATQNVQYATPSQLGTGHAVVPPT 58

Query: 75  YPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQ 134
           YPYPDPYYRSIFAPYDAQ YPPQPYGG PMVHLQLMGIQQAGVPLPTD VEEPVFVNAKQ
Sbjct: 59  YPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQ 118

Query: 135 YHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGM 194
           YHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGGRFLNSKK+ENQQ  +
Sbjct: 119 YHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEV 178

Query: 195 ASDDKSQSNLNLNSDKNEIASSDRQS 220
           AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 179 ASTDESQSTINLNSDKNELAPSDRTS 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.509	0.565	0.612	6.7e-43
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.790	0.915	0.513	4.6e-41
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.463	0.331	0.567	1.3e-27
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.336	0.225	0.706	3.6e-25
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.477	0.346	0.535	3.6e-25
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.409	0.292	0.582	4.6e-25
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.440	0.284	0.545	2e-24
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.445	0.364	0.495	4.3e-23
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.481	0.389	0.509	1e-22
SGD|S000003206	265	HAP2 "Subunit of the Hap2p/3p/	0.386	0.320	0.528	9.7e-22

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 71/116 (61%), Positives = 95/116 (81%)

Query:   105 VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 164
             V LQLMG+QQ GVPL  DAVEEPVFVNAKQYHGILRRRQSRAK E+ N+ +K++KPY+HE
Sbjct:    77 VQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHE 136

Query:   165 SRHLHALRRARGCGGRFLNSKK----NENQQKGMASDDKSQSNLNLNSDKNEIASS 216
             SRHLHA+RR RGCGGRFLN+KK    ++ +++  + ++ S+++ +L S+K  +A+S
Sbjct:   137 SRHLHAIRRPRGCGGRFLNAKKENGDHKEEEEATSDENTSEASSSLRSEKLAMATS 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 96/187 (51%), Positives = 121/187 (64%)

Query:    14 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXX 73
             MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T  V Y+    G  +     
Sbjct:     1 MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLV-YS--DPGTTNSMAPG 56

Query:    74 XXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 133
                      RSIF                  VHLQLMG+QQ GVPLP+DAVEEPVFVNAK
Sbjct:    57 QYPYPDPYYRSIFAPPPQPYTG---------VHLQLMGVQQQGVPLPSDAVEEPVFVNAK 107

Query:   134 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 193
             QYHGILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA+RR RGCGGRFLN+KK +   + 
Sbjct:   108 QYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHED 167

Query:   194 MASDDKS 200
              + ++KS
Sbjct:   168 SSHEEKS 174

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/104 (56%), Positives = 77/104 (74%)

Query:   106 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 164
             HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHE
Sbjct:   157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHE 216

Query:   165 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQS-NLNLN 207
             SRHLHAL+RARG GGRFLN+KK +     + S   +   N +++
Sbjct:   217 SRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMS 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query:   113 QQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHAL 171
             Q   VPLP D +E EPVFVNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL
Sbjct:   158 QMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHAL 217

Query:   172 RRARGCGGRFLNSKK 186
             +R RG GGRFLN+KK
Sbjct:   218 KRPRGSGGRFLNTKK 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/112 (53%), Positives = 77/112 (68%)

Query:   111 GIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHA 170
             G+  + +PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA
Sbjct:   151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHA 210

Query:   171 LRRARGCGGRFLNSKKNENQQKGMASDDKS-----QSNLNLNSDKNEIASSD 217
             +RR RG GGRF  +KK   +     +++KS     QS  + NSD+ E  + D
Sbjct:   211 MRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 53/91 (58%), Positives = 70/91 (76%)

Query:   106 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 164
             H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++K RKPYLHE
Sbjct:   150 HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHE 209

Query:   165 SRHLHALRRARGCGGRFLNSKKNENQQKGMA 195
             SRHLHAL+R RG GGRFLN+KK++     ++
Sbjct:   210 SRHLHALKRVRGSGGRFLNTKKHQESNSSLS 240

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/99 (54%), Positives = 74/99 (74%)

Query:   108 QLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK-PYLHES 165
             Q++ +    VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RK PYLHES
Sbjct:   160 QMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHES 219

Query:   166 RHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNL 204
             RH+HAL+R RG GGRFLN+KK   + +  A+ ++ Q  L
Sbjct:   220 RHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKL 258

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 52/105 (49%), Positives = 74/105 (70%)

Query:   117 VPLPTDAVEE-PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRAR 175
             +PL  +  E+  ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR R
Sbjct:   124 IPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPR 180

Query:   176 GCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 220
             G GGRFLN+K  +  ++   S+  SQS+  +   +NE  +S R++
Sbjct:   181 GSGGRFLNTKTADAAKQSKPSN--SQSS-EVFHPENETINSSREA 222

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/108 (50%), Positives = 71/108 (65%)

Query:   110 MGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLH 169
             +G+ +    LP D  +EPV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH H
Sbjct:   156 LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKH 215

Query:   170 ALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSD 217
             A+RRAR  GGRF  +KK+E +    A     +     NS  +E   +D
Sbjct:   216 AMRRARASGGRF--AKKSEVEAGEDAGGRDRERGSATNSSGSEQVETD 261

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

SGD|S000003206 HAP2 "Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 222 (83.2 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
 Identities = 46/87 (52%), Positives = 59/87 (67%)

Query:   119 LPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCG 178
             L T   E+P +VNAKQY+ IL+RR +RAK E + ++ + RKPYLHESRH HA+RR RG G
Sbjct:   152 LGTAIAEQPFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEG 211

Query:   179 GRFLNSK--KNENQQKGMASDDKSQSN 203
             GRFL +   K    +K  ASDD   S+
Sbjct:   212 GRFLTAAEIKAMKSKKSGASDDPDDSH 238

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0000436 "carbon catabolite activation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043457 "regulation of cellular respiration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84JP1	NFYA7_ARATH	No assigned EC number	0.5862	0.8454	0.9789	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02360004 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	1e-33
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	6e-33
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	3e-08

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  114 bits (288), Expect = 1e-33
 Identities = 44/57 (77%), Positives = 52/57 (91%)

Query: 125 EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 181
           +EP++VNAKQYH ILRRRQ+RAK E+ENK++KSRKPYLHESRH HA+RR RG GGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  112 bits (283), Expect = 6e-33
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 123 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFL 182
           A EEPV+VNAKQYH ILRRRQ+RAK E++ K+ K RKPYLHESRHLHA+RR RG GGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 183 N 183
           N
Sbjct: 61  N 61

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 125 EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS 184
            +P +VNAKQ + I +R   R   +    V   R  YLHESRH HA+ R R   GRFL +
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTA 215

Query: 185 KKNENQQKGMASDD 198
            + +       + D
Sbjct: 216 SEIDPLNLTGNTQD 229

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.82

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=5e-44  Score=320.67  Aligned_cols=118  Identities=50%  Similarity=0.823  Sum_probs=101.8

Q ss_pred             cCcccccc-cCCCCCCCcccccccCCCCCCCCCCCCCCc--cchhhhhcccc-CCCCCCCCCCC-CceeechhhhHHHHH
Q 027709           66 AGHAMAPA-AYPYPDPYYRSIFAPYDAQPYPPQPYGGQP--MVHLQLMGIQQ-AGVPLPTDAVE-EPVFVNAKQYHGILR  140 (220)
Q Consensus        66 ~g~s~a~~-~yPY~Dpyygg~~aaYg~q~~~~~~y~~q~--m~~~q~~G~~~-~r~plp~~~~e-ePvyVNaKQY~rIlR  140 (220)
                      ..|..+++ .+||.+|||+|+++.++  .     |++++  .+++|+.||.+ .++|||.++.| |||||||||||+|||
T Consensus       126 ~~~~~~~~s~~~~~~p~~~g~~~~~~--~-----y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~Ilr  198 (307)
T KOG1561|consen  126 SMSPANNTSGNPITSPHYRGVLDMSG--A-----YSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILR  198 (307)
T ss_pred             ccccccccccCCCCCCcccceecccc--c-----ccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHH
Confidence            34544544 47899999999999543  2     33333  35778999988 99999999877 999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcCCCcccchhhHHHhhccCCCCCcccccccchhh
Q 027709          141 RRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQ  190 (220)
Q Consensus       141 RRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~RG~gGRFL~~k~~~~~  190 (220)
                      ||++|||||+++||+|.||||||||||+|||||+||+||||||+||.+.+
T Consensus       199 RRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~  248 (307)
T KOG1561|consen  199 RRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDD  248 (307)
T ss_pred             HHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhh
Confidence            99999999999999999999999999999999999999999999996654

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=1.7e-38  Score=231.21  Aligned_cols=62  Identities=76%  Similarity=1.183  Sum_probs=60.1

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHhhhhhhhcCCCcccchhhHHHhhccCCCCCccccc
Q 027709          123 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS  184 (220)
Q Consensus       123 ~~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~RG~gGRFL~~  184 (220)
                      ++|+|||||||||++|||||++|||+|+++||++.||||||||||+|||+|+||+||||||+
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            36899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=5.5e-36  Score=215.77  Aligned_cols=57  Identities=75%  Similarity=1.184  Sum_probs=56.2

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHhhhhh-hhcCCCcccchhhHHHhhccCCCCCcc
Q 027709          125 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF  181 (220)
Q Consensus       125 eePvyVNaKQY~rIlRRRq~RaklE~~~kl-~k~rkpYLHESRH~HAm~R~RG~gGRF  181 (220)
                      |+|||||||||++|||||++|||||+++|+ ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.82  E-value=4.5e-21  Score=168.38  Aligned_cols=66  Identities=39%  Similarity=0.508  Sum_probs=60.4

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHhhhhhhhcCCCcccchhhHHHhhccCCCCCcccccccchhhh
Q 027709          124 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQ  191 (220)
Q Consensus       124 ~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~RG~gGRFL~~k~~~~~~  191 (220)
                      .++|.|||+|||++|++||-+|++||..  |.-.|..|||||||+|||+|+|+++||||++.+.+.-+
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln  222 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLN  222 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhh
Confidence            4789999999999999999999999985  55677779999999999999999999999999988664

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		5e-18
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		9e-15

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 124 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLN 183
           +EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG GGRF +
Sbjct: 1   MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS 60
Query: 184 SKKNEN 189
            K+ ++
Sbjct: 61  PKEKDS 66

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 124 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFL 182
           +E P++VNAKQ+H IL+RR +R K E + ++  K RKPYLHESRH HA+RR RG GGRFL
Sbjct: 1   MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60
Query: 183 NS 184
            +
Sbjct: 61  TA 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=1.4e-38  Score=231.89  Aligned_cols=62  Identities=60%  Similarity=1.007  Sum_probs=58.6

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHhhhhhh-hcCCCcccchhhHHHhhccCCCCCccccccc
Q 027709          125 EEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK  186 (220)
Q Consensus       125 eePvyVNaKQY~rIlRRRq~RaklE~~~kl~-k~rkpYLHESRH~HAm~R~RG~gGRFL~~k~  186 (220)
                      |+|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            7999999999999999999999999999985 8899999999999999999999999999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00