Citrus Sinensis ID: 027713

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MEVSLLSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESGQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHcccccEEEEEccHHHHHHHcccccccccccccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEccEEccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccccccccccccccccccccccEHHHHcccHHHHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHccccEEEEEHHHHHHHHHHHcccccHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEcccEccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mevsllslsssqnltlkpstnplfhfhpskrskpppthIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLfvhteeipaaikPYRNFQkekkleendfagavfegkfyapgdfkalesMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESGQ
Flexible Loop (DISEMBL)
MEVSLLSLSssqnltlkpsTNPLFHfhpskrskppptHIRAAIsrtkkeetvdTVKTHLENCHLIAAIKYKGFTVKQFQDLrrslpentklivaknTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESGQ
Low Complexity Region (SEG)
MEVsllslsssqnltlKPSTNPLFHFHPSKRSKPPPTHIRAAISRtkkeetvdtvktHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESGQ
Disordered region (IsUnstruct)
***************************************************VDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYA*********
Disordered Region (DISOPRED)
***************LKPSTNP************************KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKA***********
Disordered Region (DISEMBL)
MEVSLLSLSSSQNLTLKPSTNPLFHFHPS*********IRAAISR*********VKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESGQ
Disordered Region (DISPRO)
*********SSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVSLLSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESGQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9FY50	220	50S ribosomal protein L10	yes	no	0.822	0.822	0.795	6e-85
O80362	227	50S ribosomal protein L10	N/A	no	0.945	0.916	0.700	1e-82
Q7V383	175	50S ribosomal protein L10	yes	no	0.75	0.942	0.329	3e-21
A2BUH9	175	50S ribosomal protein L10	yes	no	0.75	0.942	0.335	4e-21
A2BNZ7	175	50S ribosomal protein L10	yes	no	0.75	0.942	0.317	5e-20
A3PAS0	175	50S ribosomal protein L10	yes	no	0.75	0.942	0.317	6e-20
A8G2K9	175	50S ribosomal protein L10	yes	no	0.75	0.942	0.317	6e-20
Q119S8	190	50S ribosomal protein L10	yes	no	0.690	0.8	0.350	1e-19
Q31CX9	175	50S ribosomal protein L10	yes	no	0.740	0.931	0.315	1e-19
A5GWK0	174	50S ribosomal protein L10	yes	no	0.681	0.862	0.316	9e-19

>sp|Q9FY50|RK10_ARATH 50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1

 Score =  313 bits (802), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 144/181 (79%), Positives = 164/181 (90%)

Query: 39  IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
           IR+A+SR KKEETV+ VK+HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct: 39  IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGK 158
           V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEGK
Sbjct: 99  VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGK 158

Query: 159 FYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDES 218
           FYAP +FK LE+MPTRAE+YAK+LGALQ  AI LV TLQAPAR+++MVL AY KKLEDES
Sbjct: 159 FYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDES 218

Query: 219 G 219
            
Sbjct: 219 N 219

This protein binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|O80362|RK10_TOBAC 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1

 Score =  305 bits (782), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 176/214 (82%), Gaps = 6/214 (2%)

Query: 6   LSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLI 65
            SL S  N +L   T+P  HF P  ++      IR+AISRTKKEETV+TVK  LE+C+L+
Sbjct: 18  FSLKSHFNNSLTLPTHP--HFKPKSKN----LTIRSAISRTKKEETVETVKQQLEDCYLL 71

Query: 66  AAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVH 125
           A I YKG TVKQFQ+LR  LP+ TKL+VAKNTLV KAIEGT+WEALKPCM GMNAWLFVH
Sbjct: 72  AGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMKGMNAWLFVH 131

Query: 126 TEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGAL 185
           +EEIPAA+KPYR FQKEKKLEENDF GAVFEGKFY P +FKALE++PTRAEIYA+LLG+L
Sbjct: 132 SEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAEIYAQLLGSL 191

Query: 186 QGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESG 219
           +G A  +VGT+QAPAR+L+MVLKAY KKLE+E G
Sbjct: 192 KGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

This protein binds directly to 23S ribosomal RNA.

Nicotiana tabacum (taxid: 4097)

>sp|Q7V383|RL10_PROMP 50S ribosomal protein L10 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplJ PE=3 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L++  +   + YKG T+K+  DLR  L  N  +  V KN+L+ KAI+G 
Sbjct: 8   KQKIVTEIKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTNNGICKVTKNSLMRKAIDGN 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF 165
           + W  L+  ++G NA++ +  E++  A+K  ++FQKE K  E    GA+FEG+  +  + 
Sbjct: 68  SNWTDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKETKKSET--KGALFEGRLLSESEI 124

Query: 166 KALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           K + S+P+R  + AK+ GAL G A  +  ++      +   LK +++K E
Sbjct: 125 KEIASLPSREVLMAKIAGALNGVATKIAISINEVPSGIARSLKQHSEKSE 174

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

>sp|A2BUH9|RL10_PROM5 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplJ PE=3 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L++  +   + YKG T+K+  DLR  L  N  +  V KN+L+ KAI+G 
Sbjct: 8   KQKIVTELKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTNKGICKVTKNSLMRKAIDGN 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF 165
           + W  L+  ++G NA++ +  E++  A+K  ++FQKE K  E    GA+FEG+  +  + 
Sbjct: 68  SNWTDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKETKKSET--KGALFEGRLLSQSEI 124

Query: 166 KALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           K + S+P+R  + AK+ GAL G A  +  ++      L   LK +++K E
Sbjct: 125 KEIASLPSREVLMAKIAGALNGVATKIAISINEVPSGLARSLKQHSEKSE 174

Prochlorococcus marinus (strain MIT 9515) (taxid: 167542)

>sp|A2BNZ7|RL10_PROMS 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain AS9601) GN=rplJ PE=3 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 97/170 (57%), Gaps = 5/170 (2%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L++  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQKIVTEIKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF 165
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + 
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEGRLLSDSEI 124

Query: 166 KALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           K + S+P++  + AK+ GAL G A  +  ++      L   LK +++K E
Sbjct: 125 KEIASLPSKEVLMAKIAGALNGVATKIAISINEVPSGLARSLKQHSEKSE 174

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

>sp|A3PAS0|RL10_PROM0 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplJ PE=3 SV=1

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 5/170 (2%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQQIVTEIKSLLNDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF 165
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + 
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEGRLLSDSEI 124

Query: 166 KALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           K + S+P++  + AK+ GAL G A  +  ++      L   LK +++K E
Sbjct: 125 KEIASLPSKEVLMAKIAGALNGVATKIAISINEVPSGLARSLKQHSEKSE 174

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

>sp|A8G2K9|RL10_PROM2 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplJ PE=3 SV=1

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 5/170 (2%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQQIVTEIKSLLNDSEMAVVLDYKGLTIKEMSDLRSRLRTTNGICRVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF 165
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + 
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEGRLLSDSEI 124

Query: 166 KALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           K + S+P++  + AK+ GAL G A  +  ++      L   LK +++K E
Sbjct: 125 KEIASLPSKEVLMAKIAGALNGVATKIAISINEVPSGLARSLKQHSEKSE 174

Prochlorococcus marinus (strain MIT 9215) (taxid: 93060)

>sp|Q119S8|RL10_TRIEI 50S ribosomal protein L10 OS=Trichodesmium erythraeum (strain IMS101) GN=rplJ PE=3 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 5/157 (3%)

Query: 44  SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKA 102
           S+ +KEE +  +K +L    L   I Y+G +V +  DLRR L P  +   +AKNTL+  A
Sbjct: 4   SKKQKEEMLAGIKQNLSESQLALVINYQGLSVAEITDLRRRLIPTGSICSIAKNTLMGIA 63

Query: 103 I-EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYA 161
           + E + W+ ++  ++G NA+LF+  + I  AIK Y++FQK  K  + +F G V EG+   
Sbjct: 64  VKEDSNWQPMEDLLAGSNAFLFLKND-IGGAIKAYQDFQKATK--KTEFKGGVMEGRLLD 120

Query: 162 PGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQA 198
               KA+  +P++ E+ A++ GA+   A  L  +L A
Sbjct: 121 KDQVKAIADLPSKEELLAQVAGAINNIATKLAISLDA 157

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|Q31CX9|RL10_PROM9 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplJ PE=3 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQQIVTEIKSLLNDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF 165
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG+  +  + 
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEGRLLSNSEI 124

Query: 166 KALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKK 213
           K + S+P++  + AK+ GAL G A  +  ++      L   LK +++K
Sbjct: 125 KEIASLPSKEVLMAKIAGALNGVATKIAISINEVPSGLARSLKQHSEK 172

Prochlorococcus marinus (strain MIT 9312) (taxid: 74546)

>sp|A5GWK0|RL10_SYNR3 50S ribosomal protein L10 OS=Synechococcus sp. (strain RCC307) GN=rplJ PE=3 SV=1

 Score = 93.6 bits (231), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 5/155 (3%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ 107
           K++ V+ +K  L    +   + YKG ++K+  DLR  L  N    V KNTL+ +AI+G  
Sbjct: 8   KQQIVEELKQLLGEAEMALVLDYKGLSIKEMSDLRGRLAANGICKVTKNTLMRRAIDGND 67

Query: 108 -WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFK 166
            W  L P ++G NA++ V   ++  A+K  ++FQK+ K  +++  G +FEG+  +  D K
Sbjct: 68  TWSDLDPLLTGTNAFVLVKG-DVGGAVKAVQSFQKDSK--KSELKGGLFEGRLLSQNDIK 124

Query: 167 ALESMPTRAEIYAKLLGALQGSAIGL-VGTLQAPA 200
           A+  +P++  + A++ G++   A  L VG  + P+
Sbjct: 125 AIGDLPSKEGLMAQIAGSINAVATKLAVGVNEVPS 159

Synechococcus sp. (strain RCC307) (taxid: 316278)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
255555289	232	50S ribosomal protein L10, putative [Ric	0.977	0.926	0.719	2e-86
224112933	227	predicted protein [Populus trichocarpa]	0.831	0.806	0.826	1e-85
224098099	182	predicted protein [Populus trichocarpa]	0.822	0.994	0.824	3e-85
225448737	226	PREDICTED: 50S ribosomal protein L10, ch	0.931	0.907	0.752	4e-85
15240644	220	Ribosomal protein L10 family protein [Ar	0.822	0.822	0.795	3e-83
297807377	220	ribosomal protein L10 family protein [Ar	0.822	0.822	0.790	4e-83
75223179	227	RecName: Full=50S ribosomal protein L10,	0.945	0.916	0.700	7e-81
449451707	235	PREDICTED: 50S ribosomal protein L10, ch	0.918	0.859	0.725	8e-81
449507576	235	PREDICTED: 50S ribosomal protein L10, ch	0.918	0.859	0.725	9e-81
357480187	234	50S ribosomal protein L10 [Medicago trun	0.963	0.905	0.674	4e-80

>gi|255555289|ref|XP_002518681.1| 50S ribosomal protein L10, putative [Ricinus communis] gi|223542062|gb|EEF43606.1| 50S ribosomal protein L10, putative [Ricinus communis]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 164/228 (71%), Positives = 184/228 (80%), Gaps = 13/228 (5%)

Query: 1   MEVSLLSLSSS-----QNLT-LKPSTNPLFHFHPSKRSKPP----PTHIRAAISRTKKEE 50
           ME +LLS  SS     Q LT  +   NP   F  SK  + P    P  I +AISRTKKEE
Sbjct: 1   METTLLSFPSSKTSPCQTLTQFRSFRNP---FPLSKSFRKPTSYKPISINSAISRTKKEE 57

Query: 51  TVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEA 110
           TV+TVKT LENC+L+AAIKY GFTVKQFQDLRR+LPE+T+LIVAKNTLV+KAIEGT WEA
Sbjct: 58  TVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRALPESTRLIVAKNTLVFKAIEGTPWEA 117

Query: 111 LKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALES 170
           LKPCM GMNAWLFVH+EEIP A+KPYR FQK+KKLE NDF GAVFEGKFY P DFK LE+
Sbjct: 118 LKPCMKGMNAWLFVHSEEIPEALKPYRTFQKDKKLESNDFTGAVFEGKFYGPDDFKQLET 177

Query: 171 MPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDES 218
           MP+RAEIYAK+LGALQ  +IGLV TLQAPARD++MVLKAY KKLEDES
Sbjct: 178 MPSRAEIYAKILGALQSPSIGLVSTLQAPARDVIMVLKAYVKKLEDES 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112933|ref|XP_002316337.1| predicted protein [Populus trichocarpa] gi|222865377|gb|EEF02508.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 36  PTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAK 95
           P  I++AISRTKKEETV+ VKT LENC+L+AAIKY GFTVKQFQD RRSLPE++KLIVAK
Sbjct: 43  PITIKSAISRTKKEETVEIVKTQLENCYLLAAIKYTGFTVKQFQDFRRSLPESSKLIVAK 102

Query: 96  NTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVF 155
           NTLVYKAIEGT WEALKPCM+GMNAWLFVHTEEIP A+KPYR+FQKEKKL ENDF GAVF
Sbjct: 103 NTLVYKAIEGTPWEALKPCMTGMNAWLFVHTEEIPEALKPYRDFQKEKKL-ENDFTGAVF 161

Query: 156 EGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           EGKFY P DFK LE+MP+RAEIYAK+LGALQG AIGLVGTLQAPARD++MVLKAY +KLE
Sbjct: 162 EGKFYGPDDFKQLETMPSRAEIYAKILGALQGPAIGLVGTLQAPARDVVMVLKAYVQKLE 221

Query: 216 DESG 219
           +ESG
Sbjct: 222 EESG 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098099|ref|XP_002311119.1| predicted protein [Populus trichocarpa] gi|222850939|gb|EEE88486.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 170/182 (93%), Gaps = 1/182 (0%)

Query: 36  PTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAK 95
           P +I++AISRTKKEETV+TVKT LENC+L+AAIKY GFTVKQFQDLRRSLPE++K+IVAK
Sbjct: 2   PINIKSAISRTKKEETVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRSLPESSKIIVAK 61

Query: 96  NTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVF 155
           NTLVYKAIE T WEALKPCM+GMNAWLFVH+EEIP A+KPYR+FQKEKKL ENDF GAVF
Sbjct: 62  NTLVYKAIENTPWEALKPCMTGMNAWLFVHSEEIPEALKPYRDFQKEKKL-ENDFTGAVF 120

Query: 156 EGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           EGKFY PGDFK LE+MP+RAEIYAK+LGALQG AIGLVGTLQAPARD++MVLKAY +KLE
Sbjct: 121 EGKFYGPGDFKQLETMPSRAEIYAKILGALQGPAIGLVGTLQAPARDVVMVLKAYVQKLE 180

Query: 216 DE 217
           +E
Sbjct: 181 EE 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448737|ref|XP_002281167.1| PREDICTED: 50S ribosomal protein L10, chloroplastic [Vitis vinifera]

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 161/214 (75%), Positives = 175/214 (81%), Gaps = 9/214 (4%)

Query: 6   LSLSSSQNLTLK--PSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCH 63
           L+L+ S+ LTL    S NP        R     T IR+AISRTKKEETV TVK  LENCH
Sbjct: 19  LTLTQSKTLTLTYPKSLNPY-------RRTSYSTTIRSAISRTKKEETVQTVKEQLENCH 71

Query: 64  LIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLF 123
           L+AAIKY GFTV+QFQ+LRRSLPE +KLIVAKNTLVYKAIEGT W AL+PCM GMN +LF
Sbjct: 72  LLAAIKYNGFTVQQFQELRRSLPEKSKLIVAKNTLVYKAIEGTSWAALEPCMKGMNVFLF 131

Query: 124 VHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLG 183
           VH+EEIPAAIKPYR+FQKEKKLE NDF GAVFEGKFY P DFKALESMPTRAEIYAKLLG
Sbjct: 132 VHSEEIPAAIKPYRDFQKEKKLEGNDFTGAVFEGKFYGPDDFKALESMPTRAEIYAKLLG 191

Query: 184 ALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDE 217
           ALQ  A  LVGTLQAPARDL+MVLKAY KKLE+E
Sbjct: 192 ALQSPASALVGTLQAPARDLVMVLKAYVKKLEEE 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240644|ref|NP_196855.1| Ribosomal protein L10 family protein [Arabidopsis thaliana] gi|75263201|sp|Q9FY50.1|RK10_ARATH RecName: Full=50S ribosomal protein L10, chloroplastic; AltName: Full=CL10; Flags: Precursor gi|9955543|emb|CAC05428.1| ribosomal protein L10-like [Arabidopsis thaliana] gi|21555764|gb|AAM63929.1| ribosomal protein L10-like [Arabidopsis thaliana] gi|208879528|gb|ACI31309.1| At5g13510 [Arabidopsis thaliana] gi|332004523|gb|AED91906.1| Ribosomal protein L10 family protein [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 144/181 (79%), Positives = 164/181 (90%)

Query: 39  IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
           IR+A+SR KKEETV+ VK+HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct: 39  IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGK 158
           V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEGK
Sbjct: 99  VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGK 158

Query: 159 FYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDES 218
           FYAP +FK LE+MPTRAE+YAK+LGALQ  AI LV TLQAPAR+++MVL AY KKLEDES
Sbjct: 159 FYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDES 218

Query: 219 G 219
            
Sbjct: 219 N 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807377|ref|XP_002871572.1| ribosomal protein L10 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317409|gb|EFH47831.1| ribosomal protein L10 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/181 (79%), Positives = 165/181 (91%)

Query: 39  IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
           IR+A+SR KKEETV+ VK+HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct: 39  IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGK 158
           V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+A+KPYR+FQKE+KLE+NDFAGAVFEGK
Sbjct: 99  VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSALKPYRSFQKERKLEDNDFAGAVFEGK 158

Query: 159 FYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDES 218
           FYAP +FK LE+MPTRAE+YAK+LGALQ  AI LV TLQAPAR+++MVL AY KKLEDES
Sbjct: 159 FYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDES 218

Query: 219 G 219
            
Sbjct: 219 N 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75223179|sp|O80362.1|RK10_TOBAC RecName: Full=50S ribosomal protein L10, chloroplastic; AltName: Full=CL10; Flags: Precursor gi|3298441|dbj|BAA31511.1| chloroplast ribosomal protein L10 [Nicotiana tabacum]

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 176/214 (82%), Gaps = 6/214 (2%)

Query: 6   LSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLI 65
            SL S  N +L   T+P  HF P  ++      IR+AISRTKKEETV+TVK  LE+C+L+
Sbjct: 18  FSLKSHFNNSLTLPTHP--HFKPKSKN----LTIRSAISRTKKEETVETVKQQLEDCYLL 71

Query: 66  AAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVH 125
           A I YKG TVKQFQ+LR  LP+ TKL+VAKNTLV KAIEGT+WEALKPCM GMNAWLFVH
Sbjct: 72  AGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMKGMNAWLFVH 131

Query: 126 TEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGAL 185
           +EEIPAA+KPYR FQKEKKLEENDF GAVFEGKFY P +FKALE++PTRAEIYA+LLG+L
Sbjct: 132 SEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAEIYAQLLGSL 191

Query: 186 QGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESG 219
           +G A  +VGT+QAPAR+L+MVLKAY KKLE+E G
Sbjct: 192 KGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451707|ref|XP_004143603.1| PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 151/208 (72%), Positives = 170/208 (81%), Gaps = 6/208 (2%)

Query: 12  QNLTLKPSTNPLFHFHPSKRSKPPPTHIR-----AAISRTKKEETVDTVKTHLENCHLIA 66
           Q LTL   TNPL  F   + S     H R     AAISRTKKEETV+TVK  LE+C+L+A
Sbjct: 20  QILTLNRPTNPL-SFSLPRHSTNQTRHYRGLKVSAAISRTKKEETVETVKQQLEDCYLLA 78

Query: 67  AIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
            IKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT WEALKPCM GMN WLFVH+
Sbjct: 79  GIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHS 138

Query: 127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQ 186
           EEIPAAIKPYR+FQKEKKLE+NDF GAVFEGK+Y P +FKALE+MP+RAE+YAK+LG LQ
Sbjct: 139 EEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPSRAEVYAKMLGLLQ 198

Query: 187 GSAIGLVGTLQAPARDLLMVLKAYAKKL 214
             A  LVGT+QAPAR+LLMVLKAY +KL
Sbjct: 199 APASSLVGTIQAPARELLMVLKAYVQKL 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507576|ref|XP_004163071.1| PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 151/208 (72%), Positives = 170/208 (81%), Gaps = 6/208 (2%)

Query: 12  QNLTLKPSTNPLFHFHPSKRSKPPPTHIR-----AAISRTKKEETVDTVKTHLENCHLIA 66
           Q LTL   TNPL  F   + S     H R     AAISRTKKEETV+TVK  LE+C+L+A
Sbjct: 20  QILTLNRPTNPL-SFSLPRHSTNQTRHYRGLKVAAAISRTKKEETVETVKQQLEDCYLLA 78

Query: 67  AIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
            IKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT WEALKPCM GMN WLFVH+
Sbjct: 79  GIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHS 138

Query: 127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQ 186
           EEIPAAIKPYR+FQKEKKLE+NDF GAVFEGK+Y P +FKALE+MP+RAE+YAK+LG LQ
Sbjct: 139 EEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPSRAEVYAKMLGLLQ 198

Query: 187 GSAIGLVGTLQAPARDLLMVLKAYAKKL 214
             A  LVGT+QAPAR+LLMVLKAY +KL
Sbjct: 199 APASSLVGTIQAPARELLMVLKAYVQKL 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480187|ref|XP_003610379.1| 50S ribosomal protein L10 [Medicago truncatula] gi|217071998|gb|ACJ84359.1| unknown [Medicago truncatula] gi|355511434|gb|AES92576.1| 50S ribosomal protein L10 [Medicago truncatula] gi|388522083|gb|AFK49103.1| unknown [Medicago truncatula]

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 176/218 (80%), Gaps = 6/218 (2%)

Query: 6   LSLSSSQNLTLKPSTNPLFHFHPSKRSKPPP---TH---IRAAISRTKKEETVDTVKTHL 59
            SL S++  + +  T P+  F+P    K  P   TH   I AAISRTKKEETV+TVK  L
Sbjct: 10  FSLPSTKTQSFQILTRPINPFNPPTSYKHRPISKTHRLSINAAISRTKKEETVETVKEQL 69

Query: 60  ENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMN 119
           ENC+L+A I YKGFTVKQFQ+LR++LPE TKL+VAKNTLVYKA+EGTQWE LKPCM+GMN
Sbjct: 70  ENCYLLAGINYKGFTVKQFQELRKTLPETTKLVVAKNTLVYKALEGTQWETLKPCMTGMN 129

Query: 120 AWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYA 179
            WLFVHTEEIP+AIKPYR+FQKEKKLEENDF GAVFEGKFY P +FK LE++PTR EIYA
Sbjct: 130 VWLFVHTEEIPSAIKPYRDFQKEKKLEENDFTGAVFEGKFYGPDEFKKLETLPTRGEIYA 189

Query: 180 KLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDE 217
            LLG+L+  +  LV T+QAPAR+L+MVLKA+ KKLE++
Sbjct: 190 NLLGSLKSPSSALVTTIQAPARELIMVLKAHIKKLEEQ 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2185051	220	EMB3136 "AT5G13510" [Arabidops	0.818	0.818	0.755	9.9e-71
TAIR|locus:2092527	171	AT3G12370 "AT3G12370" [Arabido	0.645	0.830	0.631	2.3e-46
TIGR_CMR|SPO_3510	172	SPO_3510 "ribosomal protein L1	0.690	0.883	0.292	3.1e-12
UNIPROTKB|P66044	178	rplJ "50S ribosomal protein L1	0.645	0.797	0.317	6.4e-12
TIGR_CMR|BA_0099	166	BA_0099 "ribosomal protein L10	0.618	0.819	0.298	7.4e-11
TIGR_CMR|CHY_2321	176	CHY_2321 "ribosomal protein L1	0.668	0.835	0.304	9.4e-11
TIGR_CMR|CBU_0228	174	CBU_0228 "ribosomal protein L1	0.636	0.804	0.305	4.1e-10
UNIPROTKB|P0A7J3	165	rplJ "50S ribosomal subunit pr	0.577	0.769	0.325	6.6e-10
TIGR_CMR|SO_0222	166	SO_0222 "ribosomal protein L10	0.577	0.765	0.340	8.4e-10
UNIPROTKB|Q9KV32	162	rplJ "50S ribosomal protein L1	0.563	0.765	0.340	4.7e-09

TAIR|locus:2185051 EMB3136 "AT5G13510" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 136/180 (75%), Positives = 154/180 (85%)

Query:    39 IRAAISRXXXXXXXXXXXXHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
             IR+A+SR            HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct:    39 IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query:    99 VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGK 158
             V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEGK
Sbjct:    99 VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGK 158

Query:   159 FYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDES 218
             FYAP +FK LE+MPTRAE+YAK+LGALQ  AI LV TLQAPAR+++MVL AY KKLEDES
Sbjct:   159 FYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDES 218

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2092527 AT3G12370 "AT3G12370" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 91/144 (63%), Positives = 113/144 (78%)

Query:    58 HLENCHLIAAIKYKGFTVKQFQDLRRSLPENT--KLIVAKNTLVYKAIEGTQWEALKPCM 115
             +LENCH I  I Y G +VKQ Q+LR  L ENT  KL+VAKNTLVYKA+EGT+WE+LKPCM
Sbjct:    17 NLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKPCM 76

Query:   116 SGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRA 175
              GMNAWLFV +E+IPAA+K + NFQKEKKL +N+  GAVFE K YAP D+K +E+MP+RA
Sbjct:    77 KGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPSRA 136

Query:   176 EIYAKLLGALQGSAIGLVGTLQAP 199
             ++Y  +LG+L   A+ LV  LQAP
Sbjct:   137 DVYGMMLGSLHWPALDLVNALQAP 160

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|SPO_3510 SPO_3510 "ribosomal protein L10" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 46/157 (29%), Positives = 77/157 (49%)

Query:    60 ENCHLIAAIKYKGFTVKQFQDLR-RSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGM 118
             E+  ++    Y G TV + QDLR R+      + VAKN L   A+EG    ++   ++GM
Sbjct:    18 ESSGVVVVAHYAGLTVAEMQDLRARAREAGGSVRVAKNRLAKIALEGKPCASMADLLTGM 77

Query:   119 NAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIY 178
                +  ++E+  AA K    F K+ K  E    GA+ E      G  +A+  MP+R E+ 
Sbjct:    78 T--VLTYSEDPVAAAKVAEGFAKDNKKFEI-LGGAMGENALDRAG-VEAVSKMPSREELI 133

Query:   179 AKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
             A+++  +   A  + G + APA ++  +L    +K E
Sbjct:   134 AQIVSCIGAPASNIAGAIGAPASNIAGILSTIIEKAE 170

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P66044 rplJ "50S ribosomal protein L10" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 46/145 (31%), Positives = 66/145 (45%)

Query:    69 KYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEE 128
             +Y+G TV    +LRRSL  +    VAKNTL+ +A      E L     G  A  FV  E 
Sbjct:    27 EYRGLTVANLAELRRSLTGSATYAVAKNTLIKRAASEAGIEGLDELFVGPTAIAFVTGEP 86

Query:   129 IPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGS 188
             + AA K  + F KE K       G   +G      + + +  + +R  + AKL GA++G+
Sbjct:    87 VDAA-KAIKTFAKEHKALV--IKGGYMDGHPLTVAEVERIADLESREVLLAKLAGAMKGN 143

Query:   189 AIGLVGTLQAPARDLLMVLKAYAKK 213
                  G   APA  L  +  A  +K
Sbjct:   144 LAKAAGLFNAPASQLARLAAALQEK 168

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|BA_0099 BA_0099 "ribosomal protein L10" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 45/151 (29%), Positives = 74/151 (49%)

Query:    68 IKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
             + Y+G TV +  +LR+ L E   +  V KN+L  +A E  +   L   ++G NA  F + 
Sbjct:    28 VDYRGLTVSEATELRKQLREAGVEFKVYKNSLTRRAAESAEMAELNEFLTGPNAIAFSN- 86

Query:   127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQ 186
             E++ A  K   +F K+   E  +    V EGK     + KA+ ++P+R  + + LL  LQ
Sbjct:    87 EDVVAPAKVLNDFAKDH--EALEIKAGVIEGKLVTLDEVKAIATLPSREGLLSMLLSVLQ 144

Query:   187 GSAIGLVGTLQAPARDLLMVLKAYAKKLEDE 217
                        AP R+L +  KA A + E++
Sbjct:   145 -----------APIRNLALATKAVADQKEEQ 164

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_2321 CHY_2321 "ribosomal protein L10" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 46/151 (30%), Positives = 66/151 (43%)

Query:    68 IKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
             + Y+G TV +  +LRR L E   ++ V KNTL  +A        L P + G  A L V  
Sbjct:    28 VDYRGLTVAEMTELRRKLKEKGAEIKVVKNTLAKRAAHNLGITGLDPYLEGPTA-LAVAK 86

Query:   127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQ 186
             E+  +A K   +F K+    E      + E         KA+  +P R  + AKLLG +Q
Sbjct:    87 EDPASAAKVLFDFAKDHPNLE--IKVGILENIVLEKDQVKAIADLPPRNVLLAKLLGGMQ 144

Query:   187 GSAIGLVGTLQAPARDLLMVLKAYAKKLEDE 217
                 G  G L    R  +  L+A  K+   E
Sbjct:   145 APLYGFAGALAGMLRKFVYALEAIRKQKAGE 175

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0228 CBU_0228 "ribosomal protein L10" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 44/144 (30%), Positives = 65/144 (45%)

Query:    67 AIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVH 125
             A  Y+G TV +  DLR+S  E    + V +NTL  +A + T +  L+  ++G    LF  
Sbjct:    27 AADYRGLTVSEMSDLRKSAREARVHMRVYRNTLARRAFKETTYACLEEVLTGPIV-LFFS 85

Query:   126 TEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGAL 185
              EE  AA +    F KE   E  +  G    G+       KA+  +P+R E  ++L   L
Sbjct:    86 QEEPGAAARLIEKFIKEH--ERLEVKGLALGGELLPAEKLKAVARLPSREEALSQLAAVL 143

Query:   186 QGSAIGLVGTLQAPARDLLMVLKA 209
                   LV TL  P   +  V+ A
Sbjct:   144 LAPVTKLVRTLNEPIAQVARVMAA 167

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|P0A7J3 rplJ "50S ribosomal subunit protein L10" [Escherichia coli K-12 (taxid:83333)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 44/135 (32%), Positives = 69/135 (51%)

Query:    71 KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
             +G TV +  +LR++  E    + V +NTL+ +A+EGT +E LK    G    L  ++ E 
Sbjct:    31 RGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT--LIAYSMEH 88

Query:   130 P-AAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGS 188
             P AA + ++ F K     E     A FEG+         L ++PT  E  A+L+  ++ +
Sbjct:    89 PGAAARLFKEFAKANAKFE--VKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEA 146

Query:   189 AIG-LVGTLQAPARD 202
             + G LV TL A  RD
Sbjct:   147 SAGKLVRTLAA-VRD 160

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|SO_0222 SO_0222 "ribosomal protein L10" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 46/135 (34%), Positives = 66/135 (48%)

Query:    71 KGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
             +G TV     LR+   E    + V +NTL  +A+EGT +E L    +G    L   + E 
Sbjct:    31 RGVTVGAMTGLRKKAREAGVYVRVVRNTLARRAVEGTAFECLAETFTGPT--LIAFSNEH 88

Query:   130 P-AAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGS 188
             P AA +  ++F KE+   E    GA FEG F    D   L  +PT  E  A+L+  ++ +
Sbjct:    89 PGAAARLLKDFAKEQANFE--VKGAAFEGNFIPAADIDRLAKLPTYEEALAQLMMTMKEA 146

Query:   189 AIG-LVGTLQAPARD 202
             + G  V TL A  RD
Sbjct:   147 SAGKFVRTLAA-LRD 160

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|Q9KV32 rplJ "50S ribosomal protein L10" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 46/135 (34%), Positives = 68/135 (50%)

Query:    71 KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
             +G  V    +LR+   E    L V +NTL  +A+EGT +E LK    G    L   + E 
Sbjct:    31 RGVQVAAMTNLRKQAREAGVYLKVVRNTLARRAVEGTAYECLKDVFVGPT--LIGFSNEH 88

Query:   130 P-AAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGS 188
             P AA + +++F KE K  E     A FEG    P   + L ++PT  E  A+L+  ++ +
Sbjct:    89 PGAAARLFKDFAKENKAFE--IKAAAFEGVLTDP---EVLATLPTYDEAIARLMMCMKEA 143

Query:   189 AIG-LVGTLQAPARD 202
             + G LV T+ A  RD
Sbjct:   144 SAGKLVRTIAA-VRD 157

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FY50	RK10_ARATH	No assigned EC number	0.7955	0.8227	0.8227	yes	no
O80362	RK10_TOBAC	No assigned EC number	0.7009	0.9454	0.9162	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.2488.1	hypothetical protein (184 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_I2532	SubName- Full=Putative uncharacterized protein; (187 aa)	•			•	•		•		0.882
	gw1.3183.1.1	Ribosomal protein L1 (149 aa)	•			•	•		•		0.871
	eugene3.29520003	annotation not avaliable (742 aa)	•			•			•		0.870
	eugene3.00141000	hypothetical protein (227 aa)	•			•	•		•		0.869
	gw1.VII.3733.1	hypothetical protein (147 aa)	•			•	•		•		0.866
	grail3.3183000301	Predicted protein (109 aa)	•			•			•		0.865
	grail3.3183000201	Predicted protein (143 aa)	•			•	•		•		0.856
	gw1.86.69.1	hypothetical protein (141 aa)	•			•	•		•		0.837
	estExt_fgenesh4_pm.C_LG_IX0496	hypothetical protein (329 aa)	•			•	•		•		0.836
	gw1.16155.2.1	Predicted protein (206 aa)	•			•	•		•		0.836

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
cd05797	157	cd05797, Ribosomal_L10, Ribosomal protein L10 fami	1e-45
PRK00099	172	PRK00099, rplJ, 50S ribosomal protein L10; Reviewe	1e-42
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	7e-38
COG0244	175	COG0244, RplJ, Ribosomal protein L10 [Translation,	1e-27
pfam00466	100	pfam00466, Ribosomal_L10, Ribosomal protein L10	4e-20
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	2e-08
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	1e-06
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	6e-04

>gnl|CDD|240223 cd05797, Ribosomal_L10, Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

 Score =  148 bits (376), Expect = 1e-45
 Identities = 68/160 (42%), Positives = 87/160 (54%), Gaps = 6/160 (3%)

Query: 44  SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKA 102
           +R KKEE V  +K  L+    +    Y+G TV Q  +LR+ L E   KL V KNTL  +A
Sbjct: 1   NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRA 60

Query: 103 IEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKE-KKLEENDFAGAVFEGKFYA 161
           +EGT +E L   + G  A  F   E+  AA K  ++F KE KKLE     G V EGK   
Sbjct: 61  LEGTGFEDLDDLLKGPTAIAFS-EEDPVAAAKVLKDFAKENKKLE---IKGGVVEGKVLD 116

Query: 162 PGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPAR 201
             + KAL  +P+R E+ A+LLG LQ  A  LV  L APA 
Sbjct: 117 AEEVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPAS 156

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These bacteria and eukaryotic sequences have no additional C-terminal domain, present in other eukaryotic and archaeal orthologs. Length = 157

>gnl|CDD|234632 PRK00099, rplJ, 50S ribosomal protein L10; Reviewed

 Score =  141 bits (358), Expect = 1e-42
 Identities = 67/172 (38%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAI 103
           R +K+E V  +   L+         Y+G TV Q  +LR+ L E   +  V KNTL  +A+
Sbjct: 3   REEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRAL 62

Query: 104 EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPG 163
           EGT +E L   + G  A  F   E+  AA K  ++F K+ K  E    G   EGK     
Sbjct: 63  EGTGFEGLDDLLKGPTAIAFS-YEDPVAAAKVLKDFAKDNKKLE--IKGGAIEGKVLDAE 119

Query: 164 DFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
           + KAL  +P+R E+ AKLLG LQ  A  L G L AP   L  VLKA A+K E
Sbjct: 120 EVKALAKLPSREELLAKLLGVLQAPATKLAGVLNAPPSKLARVLKALAEKKE 171

Length = 172

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score =  128 bits (325), Expect = 7e-38
 Identities = 58/157 (36%), Positives = 80/157 (50%), Gaps = 6/157 (3%)

Query: 47  KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEG 105
           KKEE V+ +K  L+    +  + Y+G TV Q  +LR+ L E   KL V KNTL+ +A++G
Sbjct: 2   KKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKG 61

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFA-GAVFEGKFYAPGD 164
           T +E LKP + G  A  F   E+     K  ++F KE K     FA G V  GK   P  
Sbjct: 62  TGFEELKPLLKGPTALAFT-NEDPVEVAKVLKDFAKENK---KLFAKGGVVAGKVLDPAG 117

Query: 165 FKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPAR 201
             AL  +P+R E+ A L+G L+     L   L A   
Sbjct: 118 VTALAKLPSREELLAMLIGLLKAPIAKLARLLNALGI 154

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|223322 COG0244, RplJ, Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

 Score =  103 bits (258), Expect = 1e-27
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 41  AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLV 99
            A++R  K+E V  +K  ++    +  + Y+G TV Q  +LR+ L E   KL V KNTL+
Sbjct: 1   MALAREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLL 60

Query: 100 YKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKE--KKLEENDFAGAVFEG 157
            +A+E    E L   + G  A  F   E+  AA K  ++F KE   K       G V EG
Sbjct: 61  RRALEEAGLEGLDDLLKGPTAIAFS-NEDPVAAAKLLKDFAKEAGDKAP---IKGGVPEG 116

Query: 158 KFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKK 213
           K     +  AL  +P++ E+   LLG LQ  A  L+  L+A    + + L A  +K
Sbjct: 117 KVLGAAEVIALAKLPSKEELVVMLLGVLQAPATKLLRALKAVPDKVGLKLLAAYEK 172

Length = 175

>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10

 Score = 81.4 bits (202), Expect = 4e-20
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENT-KLIVAKNTLVYKAI 103
           R KKEE V  +K  L+    +  + Y+G TV Q  +LR+ L E   +L V KNTL+ +A+
Sbjct: 3   REKKEEIVAELKELLKEYKSVVVVDYRGLTVAQLTELRKKLREAGAELKVGKNTLMRRAL 62

Query: 104 EGT-QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQK 141
           EGT + EAL   + G  A +F + E+  A  K  + F K
Sbjct: 63  EGTGEEEALSELLKGPTALIFTN-EDPVAVAKVLKKFAK 100

Length = 100

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 15/107 (14%)

Query: 47  KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG- 105
            K+E V+ +   L++   +  +       KQ Q +RRSL    ++++ KNTL+ +A+   
Sbjct: 2   WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNL 61

Query: 106 ----TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEEN 148
                + E L P + G     F+ T   P  I+        K LEEN
Sbjct: 62  GDENPELEKLLPYLKGNVG--FIFTNGDPFEIR--------KILEEN 98

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)

Query: 47  KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT 106
           KKEE V+ +K  +++  ++  +  +G   +Q Q++RR L    +L V+KNTL+ +A+E  
Sbjct: 8   KKEE-VEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEA 66

Query: 107 QW---EALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEEN 148
                E L+  + G  A +F  T   P  +         K LE++
Sbjct: 67  GEEDLEKLEDYLEGQVALIF--TNMNPFKLY--------KLLEKS 101

Length = 330

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 76  KQFQDLRRSLPENTKLIVAKNTLVYKAI-----EGTQWEALKPCMSGMNAWLFVHTEEIP 130
           KQ QD+RRSL    +L++ KNTL+ KA+     E  + E L P + G     FV T++  
Sbjct: 38  KQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVG--FVFTKDDL 95

Query: 131 AAIKP 135
             +KP
Sbjct: 96  FEVKP 100

Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	100.0
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	100.0
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	100.0
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	100.0
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.9
KOG4241	245	consensus Mitochondrial ribosomal protein L10 [Tra	99.84
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	99.83
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	99.83
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	99.81
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	99.79
PTZ00240	323	60S ribosomal protein P0; Provisional	99.64
KOG0815	245	consensus 60S acidic ribosomal protein P0 [Transla	99.11
KOG0816	223	consensus Protein involved in mRNA turnover [RNA p	99.06

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=100.00  E-value=6.1e-45  Score=300.61  Aligned_cols=170  Identities=39%  Similarity=0.578  Sum_probs=163.8

Q ss_pred             cChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCceEE
Q 027713           43 ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAW  121 (220)
Q Consensus        43 ~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~tal  121 (220)
                      |+|++|.++|+++++.|++|++++++||+|++++++++||++||++ ++++|+|||||++|+++++++++.++|+|++|+
T Consensus         1 m~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~~~~l~~~l~G~~al   80 (172)
T PRK00099          1 MNREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTGFEGLDDLLKGPTAI   80 (172)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhhhhCcCCeEE
Confidence            6789999999999999999999999999999999999999999985 899999999999999999999999999999999


Q ss_pred             EEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 027713          122 LFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPAR  201 (220)
Q Consensus       122 vfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~~~~  201 (220)
                      +|++ +||.+++|++.+|.|+++  ++.++||++||+++|.+++++||+|||+|+++++|+|+|++|+++++++|+++++
T Consensus        81 ~fs~-~d~~~~~k~l~~f~K~~~--~~~l~gg~~eg~~l~~~~i~~la~LPs~~el~a~l~~~l~~p~~~l~~~L~~~~~  157 (172)
T PRK00099         81 AFSY-EDPVAAAKVLKDFAKDNK--KLEIKGGAIEGKVLDAEEVKALAKLPSREELLAKLLGVLQAPATKLAGVLNAPPS  157 (172)
T ss_pred             EEeC-CChHHHHHHHHHHHhhCc--CceEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            9997 577789999999999985  5899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 027713          202 DLLMVLKAYAKKLE  215 (220)
Q Consensus       202 ~L~~~L~~~~~k~e  215 (220)
                      +|+++|+++.++++
T Consensus       158 ~l~~~L~~~~~~~~  171 (172)
T PRK00099        158 KLARVLKALAEKKE  171 (172)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999999874

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=100.00  E-value=5.6e-41  Score=272.88  Aligned_cols=155  Identities=42%  Similarity=0.616  Sum_probs=148.3

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCceEEE
Q 027713           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWL  122 (220)
Q Consensus        44 ~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~talv  122 (220)
                      .|++|.+++++++++|+++++++++||+|++++++++||++||+. ++++|+||||+++|+++++++++.++|+|++|++
T Consensus         1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~~~~l~~~l~G~~al~   80 (157)
T cd05797           1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTGFEDLDDLLKGPTAIA   80 (157)
T ss_pred             ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhHhhCcCCEEEE
Confidence            378999999999999999999999999999999999999999976 8999999999999999999999999999999999


Q ss_pred             EeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 027713          123 FVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPAR  201 (220)
Q Consensus       123 fs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~~~~  201 (220)
                      |++ +||.+++|++.+|.|+++  ++.++||++||+++|.+++++||+|||+|++++||+|+|++|+++++++|+++++
T Consensus        81 f~~-~d~~~~~k~l~~f~k~~~--~~~~~gg~~eg~~l~~~~v~~la~LPs~e~l~a~l~~~l~~p~~~l~~~L~~~~~  156 (157)
T cd05797          81 FSE-EDPVAAAKVLKDFAKENK--KLEIKGGVVEGKVLDAEEVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPAS  156 (157)
T ss_pred             EeC-CChHHHHHHHHHHHHhCC--CcEEEEEEECCEecCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            997 578789999999999985  6899999999999999999999999999999999999999999999999998865

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-38  Score=264.45  Aligned_cols=172  Identities=33%  Similarity=0.456  Sum_probs=164.3

Q ss_pred             hccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCce
Q 027713           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMN  119 (220)
Q Consensus        41 ~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~t  119 (220)
                      |++.+++|.++|+++++.|++|++++|+||+|+++.++++||++||+. ++++|+||||+++|+++++++.+.++|+||+
T Consensus         1 ~~~~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~   80 (175)
T COG0244           1 MALAREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAGLEGLDDLLKGPT   80 (175)
T ss_pred             CCccHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcchhhHHHhccCCe
Confidence            678889999999999999999999999999999999999999999975 9999999999999999999999999999999


Q ss_pred             EEEEeecCChhHHhHHHHHHHhhc-CcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027713          120 AWLFVHTEEIPAAIKPYRNFQKEK-KLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQA  198 (220)
Q Consensus       120 alvfs~~~~~~~~aK~l~~f~K~~-~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~  198 (220)
                      |++|++ +||.+++|++.+|+|.+ .  .+.++||++||..++..+++++++||++++++++++|.+++|.+++++.|++
T Consensus        81 ai~fs~-~dp~~~~K~~~~f~k~~~~--~~~~~~~~~eg~~l~~~~v~~~aklp~~~el~~~l~g~~~ap~~~~~~~L~a  157 (175)
T COG0244          81 AIAFSN-EDPVAAAKLLKDFAKEAGD--KAPIKGGVPEGKVLGAAEVIALAKLPSKEELVVMLLGVLQAPATKLLRALKA  157 (175)
T ss_pred             EEEEec-CCHHHHHHHHHHHhhhhcc--cceEEEEEecCcccCHHHHHHHhcCCcHHHHHHHHHHhhHhhHHHHHHHHhc
Confidence            999997 47889999999999995 4  6899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhh
Q 027713          199 PARDLLMVLKAYAKKLE  215 (220)
Q Consensus       199 ~~~~L~~~L~~~~~k~e  215 (220)
                      .+..+.+.+.++.+++.
T Consensus       158 ~~~~~~~~~~a~~~~g~  174 (175)
T COG0244         158 VPDKVGLKLLAAYEKGV  174 (175)
T ss_pred             cHHHHhhHHHHhhccCC
Confidence            99999999999887653

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=100.00  E-value=7.3e-34  Score=229.50  Aligned_cols=153  Identities=37%  Similarity=0.558  Sum_probs=145.1

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCceEEEEe
Q 027713           46 TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFV  124 (220)
Q Consensus        46 ~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~talvfs  124 (220)
                      ++|.+++++++++|++|+.++++||+|+++++++++|++|++. ++++|+|||||++|+++++++.+.++|+|+++++|+
T Consensus         1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~~~~~~~~l~G~~~~~f~   80 (155)
T cd00379           1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTGFEELKPLLKGPTALAFT   80 (155)
T ss_pred             CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCCccchhhhCcCCEEEEEe
Confidence            4799999999999999999999999999999999999999977 999999999999999999999999999999999999


Q ss_pred             ecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 027713          125 HTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPAR  201 (220)
Q Consensus       125 ~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~~~~  201 (220)
                      + +|+.+++|++.+|.+.++  ++.++||++||++++++++..++++|+++++++++++++++|+.++++.|+++..
T Consensus        81 ~-~~~~~~~k~~~~~~k~~~--~~~~k~g~~~~~v~~~~~~~~l~~lp~~~~~~~~~v~~l~~~~~~l~~~L~~~~~  154 (155)
T cd00379          81 N-EDPVEVAKVLKDFAKENK--KLFAKGGVVAGKVLDPAGVTALAKLPSREELLAMLIGLLKAPIAKLARLLNALGI  154 (155)
T ss_pred             C-CChHHHHHHHHHHHHhCC--CceEEEEEEcCEecCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            7 577789999999999875  5899999999999999999999999999999999999999999999998887653

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.90  E-value=4.9e-24  Score=160.75  Aligned_cols=98  Identities=35%  Similarity=0.576  Sum_probs=92.9

Q ss_pred             cChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcc-cccccccCceE
Q 027713           43 ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWE-ALKPCMSGMNA  120 (220)
Q Consensus        43 ~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~-~L~~~l~G~ta  120 (220)
                      |+|++|.++++++.+.|++++.+++++|+|++++++++||++|+++ ++++|+||+|+++|+++++++ .+.++|.|++|
T Consensus         1 m~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~~~~~l~~~l~G~~~   80 (100)
T PF00466_consen    1 MTKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTGFEEALSPLLKGPTA   80 (100)
T ss_dssp             -SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHHTSSSSSCCTSSSEE
T ss_pred             CcHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCccccCccccccCCEE
Confidence            6889999999999999999999999999999999999999999987 999999999999999999998 89999999999


Q ss_pred             EEEeecCChhHHhHHHHHHHh
Q 027713          121 WLFVHTEEIPAAIKPYRNFQK  141 (220)
Q Consensus       121 lvfs~~~~~~~~aK~l~~f~K  141 (220)
                      ++|++ +|+.+++|++.+|+|
T Consensus        81 ~if~~-~d~~~~~k~l~~~~K  100 (100)
T PF00466_consen   81 LIFSN-EDPFEIAKILKKFAK  100 (100)
T ss_dssp             EEEES-SSHHHHHHHHHHSTT
T ss_pred             EEEEC-CCHHHHHHHHHHhcC
Confidence            99995 678889999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1.1e-20  Score=157.90  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCceEEEEeecCC
Q 027713           50 ETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEE  128 (220)
Q Consensus        50 ~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~talvfs~~~~  128 (220)
                      -+..|+..+++++.+++++++..+++.++.-.|.+||++ +.|+.+.|.+++.++++|.|+.|.++|.|+.+++|++  |
T Consensus        77 ~~~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~y~~l~plfvgnh~ill~~--d  154 (245)
T KOG4241|consen   77 SNLREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTPYSSLNPLFVGNHAILLAK--D  154 (245)
T ss_pred             HHHHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCchhhhhhheeccceEEEcC--C
Confidence            456678889999999999999999999999999999876 9999999999999999999999999999999999986  3


Q ss_pred             hhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 027713          129 IPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLK  208 (220)
Q Consensus       129 ~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~~~~~L~~~L~  208 (220)
                      ++.+ |.+....++-  +.+.+.||+++..+++..++.+||+|||++.++|+++.++....+++...++..++++..+|+
T Consensus       155 ~~ki-k~~lri~r~v--P~~~llgG~I~dtvlsRnqlv~yaklpsL~~vqa~lvQ~l~qq~~~l~~ql~~~qr~~~svld  231 (245)
T KOG4241|consen  155 ISKI-KSILRITRKV--PLVMLLGGRIVDTVLSRNQLVEYAKLPSLEDVQAHLVQLLGQQVAQLTIQLDTVQRHLPSVLD  231 (245)
T ss_pred             hHHH-HHHHHHHhhc--chheecccchHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhHHHHHHHHHHHHhccchHhh
Confidence            4333 4444443443  468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 027713          209 AYAKKL  214 (220)
Q Consensus       209 ~~~~k~  214 (220)
                      ++.+-.
T Consensus       232 ~h~k~~  237 (245)
T KOG4241|consen  232 SHIKTN  237 (245)
T ss_pred             ccCCCC
Confidence            998754

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=99.83  E-value=1.4e-20  Score=155.97  Aligned_cols=94  Identities=23%  Similarity=0.342  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC-----cccccccccCceE
Q 027713           46 TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-----WEALKPCMSGMNA  120 (220)
Q Consensus        46 ~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~-----~~~L~~~l~G~ta  120 (220)
                      +||.++|+++++.+++|+.+++++|+|++++++++||++||+.++++|+|||||++|+++++     ++.|.++|+|++|
T Consensus         1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~   80 (175)
T cd05795           1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVG   80 (175)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEE
Confidence            58999999999999999999999999999999999999999889999999999999999986     6788999999999


Q ss_pred             EEEeecCChhHHhHHHHHHH
Q 027713          121 WLFVHTEEIPAAIKPYRNFQ  140 (220)
Q Consensus       121 lvfs~~~~~~~~aK~l~~f~  140 (220)
                      ++|++ +|+.+++|++.+|.
T Consensus        81 liFt~-~dp~~v~k~l~~~~   99 (175)
T cd05795          81 FIFTN-GDPFEIRKILEENK   99 (175)
T ss_pred             EEEEC-CCHHHHHHHHHHcC
Confidence            99997 67888999999873

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=99.83  E-value=3.2e-20  Score=152.33  Aligned_cols=93  Identities=16%  Similarity=0.347  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC-------cccccccccCc
Q 027713           46 TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-------WEALKPCMSGM  118 (220)
Q Consensus        46 ~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~-------~~~L~~~l~G~  118 (220)
                      +||.++++++++.|++|+.+++++|+|++++++++||++||+. +++|+|||||++|+++++       ++.|.++|+|+
T Consensus         1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~   79 (163)
T cd05796           1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ   79 (163)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence            5899999999999999999999999999999999999999988 999999999999999875       67899999999


Q ss_pred             eEEEEeecCChhHHhHHHHHHH
Q 027713          119 NAWLFVHTEEIPAAIKPYRNFQ  140 (220)
Q Consensus       119 talvfs~~~~~~~~aK~l~~f~  140 (220)
                      +|++|++ +|+.+++|++.+|.
T Consensus        80 ~~lift~-~dp~~v~k~l~~~~  100 (163)
T cd05796          80 VGLLFTN-EPPEEVIEYFDSYS  100 (163)
T ss_pred             EEEEEEC-CCHHHHHHHHHHcC
Confidence            9999997 67888999999883

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=99.81  E-value=9.3e-20  Score=164.66  Aligned_cols=96  Identities=25%  Similarity=0.369  Sum_probs=91.4

Q ss_pred             cChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC---cccccccccCce
Q 027713           43 ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ---WEALKPCMSGMN  119 (220)
Q Consensus        43 ~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~---~~~L~~~l~G~t  119 (220)
                      ..++||.++|++++++|++|+.++|+||+|++++++++||++||+.++++|+|||||++||++++   ++.|.++|+|++
T Consensus         3 ~~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~   82 (330)
T PRK04019          3 HVPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQV   82 (330)
T ss_pred             chHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCE
Confidence            45799999999999999999999999999999999999999999889999999999999999998   899999999999


Q ss_pred             EEEEeecCChhHHhHHHHHH
Q 027713          120 AWLFVHTEEIPAAIKPYRNF  139 (220)
Q Consensus       120 alvfs~~~~~~~~aK~l~~f  139 (220)
                      +++|++ +||..++|++.+|
T Consensus        83 alift~-~dp~~v~k~l~~~  101 (330)
T PRK04019         83 ALIFTN-MNPFKLYKLLEKS  101 (330)
T ss_pred             EEEEEC-CCHHHHHHHHHHc
Confidence            999997 6788899999987

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=99.79  E-value=3.1e-19  Score=159.90  Aligned_cols=98  Identities=26%  Similarity=0.373  Sum_probs=91.0

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcC-----CcccccccccCc
Q 027713           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALKPCMSGM  118 (220)
Q Consensus        44 ~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t-----~~~~L~~~l~G~  118 (220)
                      .|++|.+++++|++.|++|+.++|++|+|++++|+++||++||+++.++|+|||||++||+++     +++.|.++|+|+
T Consensus         6 ~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~   85 (310)
T PTZ00135          6 KKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGN   85 (310)
T ss_pred             hHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCC
Confidence            368999999999999999999999999999999999999999988899999999999999987     478899999999


Q ss_pred             eEEEEeecCChhHHhHHHHHHHhh
Q 027713          119 NAWLFVHTEEIPAAIKPYRNFQKE  142 (220)
Q Consensus       119 talvfs~~~~~~~~aK~l~~f~K~  142 (220)
                      ++++||+ +|+.+++|++.+|.+.
T Consensus        86 ~gliFTn-~dp~ev~k~l~~~k~~  108 (310)
T PTZ00135         86 VGFVFTK-DDLFEVKPVILENKVP  108 (310)
T ss_pred             EEEEEEC-CCHHHHHHHHHHcCCc
Confidence            9999997 5687899999998553

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=99.64  E-value=1.1e-15  Score=137.43  Aligned_cols=96  Identities=21%  Similarity=0.284  Sum_probs=86.5

Q ss_pred             cChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC-------cccc----
Q 027713           43 ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-------WEAL----  111 (220)
Q Consensus        43 ~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~-------~~~L----  111 (220)
                      ..++||.+++++|++++++|+.++||+++|++++|++++|+.||+.+++.|+|||||++||++++       ++.+    
T Consensus         3 ~~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~   82 (323)
T PTZ00240          3 SITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQ   82 (323)
T ss_pred             chhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhh
Confidence            34688999999999999999999999999999999999999999989999999999999999864       3455    


Q ss_pred             ---cccccCceEEEEeecCChhHHhHHHHHH
Q 027713          112 ---KPCMSGMNAWLFVHTEEIPAAIKPYRNF  139 (220)
Q Consensus       112 ---~~~l~G~talvfs~~~~~~~~aK~l~~f  139 (220)
                         .++++|+++++||+ +++..+.++|.++
T Consensus        83 ~~~~~~l~GnvgliFTn-~~p~ev~~~l~~~  112 (323)
T PTZ00240         83 CEEKNLLSGNTGLIFTN-NEVQEITSVLDSH  112 (323)
T ss_pred             ccccccccCCEEEEEeC-CCHHHHHHHHHHc
Confidence               48999999999998 6787888888766

>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=3.7e-10  Score=95.69  Aligned_cols=96  Identities=21%  Similarity=0.309  Sum_probs=84.2

Q ss_pred             ccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC-----ccccccccc
Q 027713           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-----WEALKPCMS  116 (220)
Q Consensus        42 a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~-----~~~L~~~l~  116 (220)
                      +...++|..+..++.++|+++..++++.-+++...|++++|+.||..+.+.+.|||++|+|+++.+     ++.+.+++.
T Consensus         4 ~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~~~~llp~~~   83 (245)
T KOG0815|consen    4 ADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPALEKLLPVVK   83 (245)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHHHHhhcccee
Confidence            445789999999999999999999999999999999999999999999999999999999999863     578999999


Q ss_pred             CceEEEEeecCChhHHhHHHHH
Q 027713          117 GMNAWLFVHTEEIPAAIKPYRN  138 (220)
Q Consensus       117 G~talvfs~~~~~~~~aK~l~~  138 (220)
                      |+++++|++++ ..++-+.+.+
T Consensus        84 g~vgfvftk~~-L~ei~~~i~~  104 (245)
T KOG0815|consen   84 GNVGFVFTKGD-LKEIRKEIIE  104 (245)
T ss_pred             eceeEEEEecc-HHHHHHHHHh
Confidence            99999999844 4444444433

>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]

Probab=99.06  E-value=1.1e-09  Score=91.66  Aligned_cols=116  Identities=15%  Similarity=0.271  Sum_probs=93.6

Q ss_pred             ccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC-------ccccccc
Q 027713           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-------WEALKPC  114 (220)
Q Consensus        42 a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~-------~~~L~~~  114 (220)
                      ...+++|..+++++++.+++|++++|++..||...-+.++|.+|+ +..+.++||++|..|+..+.       +..+..+
T Consensus        17 KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~~~~dE~~~~l~klskl   95 (223)
T KOG0816|consen   17 KKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGRSREDEYKENLYKLSKL   95 (223)
T ss_pred             hhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcCCchhhHHHHHHHhhhh
Confidence            345789999999999999999999999999999999999999999 78999999999999999874       4567889


Q ss_pred             ccCceEEEEeecCChhHHhHHHHH-----HHhhcC--cCCcceeeeeeCCee
Q 027713          115 MSGMNAWLFVHTEEIPAAIKPYRN-----FQKEKK--LEENDFAGAVFEGKF  159 (220)
Q Consensus       115 l~G~talvfs~~~~~~~~aK~l~~-----f~K~~~--~~~l~l~gg~veg~~  159 (220)
                      ++|.++++|++ .+..++.-.+..     |++.+.  ...+.|-.|.++..-
T Consensus        96 l~G~~GLlFTd-~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~  146 (223)
T KOG0816|consen   96 LKGSVGLLFTD-MSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFA  146 (223)
T ss_pred             ccCceEEEecC-CCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcc
Confidence            99999999996 445555555543     444441  234556666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
1zaw_A	180	Ribosomal Protein L10-L12(Ntd) Complex, Space Group		4e-14
1zav_A	180	Ribosomal Protein L10-L12(Ntd) Complex, Space Group		6e-14
2j03_J	173	Structure Of The Thermus Thermophilus 70s Ribosome		1e-11
3j0t_J	164	Structural Characterization Of Mrna-Trna Translocat		1e-07
3sgf_H	165	Crystal Structure Of Release Factor Rf3 Trapped In		1e-07

>pdb|1ZAW|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P212121, Form A Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Query: 62  CHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNTLVYKAIEGTQWEALKPCMSG 117
             LI    + GFTV    +LR  L E      +  V KNTL+  A++  ++E  +  + G
Sbjct: 22  TSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81
Query: 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEI 177
             A L+V   +   A+K   NF K+KK + +   G   EGK +   + + +  +P++ E+
Sbjct: 82  PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEEL 141
Query: 178 YAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKK 213
           YA L+G ++    GLV  L    R+L+ VL A  +K
Sbjct: 142 YAXLVGRVKAPITGLVFALSGILRNLVYVLNAIKEK 177

>pdb|1ZAV|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P21 Length = 180

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Query: 62  CHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNTLVYKAIEGTQWEALKPCMSG 117
             LI    + GFTV    +LR  L E      +  V KNTL+  A++  ++E  +  + G
Sbjct: 22  TSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81
Query: 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEI 177
             A L+V   +   A+K   NF K+KK + +   G   EGK +   + + +  +P++ E+
Sbjct: 82  PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEEL 141
Query: 178 YAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKK 213
           YA L+G ++    GLV  L    R+L+ VL A  +K
Sbjct: 142 YAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEK 177

>pdb|3J0T|J Chain J, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class2 Of The Six Classes) Length = 164

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 71  KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
           +G TV +  +LR++  E    + V +NTL+ +A+EGT +E LK    G    L  ++ E 
Sbjct: 30  RGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT--LIAYSMEH 87
Query: 130 P-AAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGS 188
           P AA + ++ F K     + +   A FEG+         L ++PT  E  A+L+  ++ +
Sbjct: 88  PGAAARLFKEFAKANA--KFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEA 145
Query: 189 AIG-LVGTLQAPARD 202
           + G LV TL A  RD
Sbjct: 146 SAGKLVRTL-AAVRD 159

>pdb|3SGF|H Chain H, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 165

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 71  KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
           +G TV +  +LR++  E    + V +NTL+ +A+EGT +E LK    G    L  ++ E 
Sbjct: 31  RGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT--LIAYSMEH 88
Query: 130 P-AAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGS 188
           P AA + ++ F K     + +   A FEG+         L ++PT  E  A+L+  ++ +
Sbjct: 89  PGAAARLFKEFAKANA--KFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEA 146
Query: 189 AIG-LVGTLQAPARD 202
           + G LV TL A  RD
Sbjct: 147 SAGKLVRTL-AAVRD 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
1zav_A	180	50S ribosomal protein L10; ribosome structure and	1e-40
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	9e-35
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	7e-31
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	3e-12
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	1e-10
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	2e-09
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	4e-08
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	2e-06
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A Length = 180

 Score =  135 bits (343), Expect = 1e-40
 Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 4/179 (2%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNT 97
            ++R +KE  V  +    +   LI    + GFTV    +LR  L E      +  V KNT
Sbjct: 2   MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNT 61

Query: 98  LVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           L+  A++  ++E  +  + G  A L+V   +   A+K   NF K+KK + +   G   EG
Sbjct: 62  LLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEG 121

Query: 158 KFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLED 216
           K +   + + +  +P++ E+YA L+G ++    GLV  L    R+L+ VL A  +K  +
Sbjct: 122 KKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE 180

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J* Length = 165

 Score =  110 bits (277), Expect = 7e-31
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVY 100
           A++   K+  V  V    +          +G TV +  +LR++  E    + V +NTL+ 
Sbjct: 2   ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLR 61

Query: 101 KAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKE-KKLEENDFAGAVFEGKF 159
           +A+EGT +E LK    G     +       AA + ++ F K   K E      A FEG+ 
Sbjct: 62  RAVEGTPFECLKDAFVGPTLIAYSMEHPGAAA-RLFKEFAKANAKFE---VKAAAFEGEL 117

Query: 160 YAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLE 215
                   L ++PT  E  A+L+  ++          +A A  L+  L A     E
Sbjct: 118 IPASQIDRLATLPTYEEAIARLMATMK----------EASAGKLVRTLAAVRDAKE 163

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii} Length = 213

 Score = 62.4 bits (151), Expect = 3e-12
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 12/138 (8%)

Query: 46  TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIE- 104
             K E V T+K  +++  ++A +        Q Q++R  + +  KL +++NTL+ +A++ 
Sbjct: 3   PWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKE 62

Query: 105 ------GTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGK 158
                   +   L   +    A L                  +E K       G +    
Sbjct: 63  AAEELNNPKLAELANYVERGAAILVTDMN-----PFKLYKLLEENKSPAPVRGGQIAPCD 117

Query: 159 FYAPGDFKALESMPTRAE 176
                    +   P   E
Sbjct: 118 IKVEKGSTGMPPGPFLGE 135

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ... Length = 348

 Score = 59.1 bits (142), Expect = 1e-10
 Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIE 104
              K+E VD +   +E+   +  +   G   +Q QD+RR L    +L V++NTL+ +A++
Sbjct: 13  PEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALD 72

Query: 105 GTQ--WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFA 151
                 E L   ++G    +    +   +  +     +    +   + A
Sbjct: 73  DVDDGLEDLNGYITGQVGLIG-TDDNPFSLFQELEASKTPAPIGAGEVA 120

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8 Length = 312

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYK 101
              R KK E    ++ +LE    +  +     + +Q  ++R+ L     +++ KNT+V +
Sbjct: 2   GGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRR 61

Query: 102 AIEGT-----QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFE 156
           AI G       +E L P + G   ++F  T E    I         +       A     
Sbjct: 62  AIRGFLSDLPDFEKLLPFVKGNVGFVF--TNEPLTEI--KNVIVSNR---VAAPA----R 110

Query: 157 GKFYAPGDF 165
               AP D 
Sbjct: 111 AGAVAPEDI 119

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} Length = 284

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 9/119 (7%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVY 100
           A     K++ V+ +   +++  +IA +            +RR +      L V++NTL+ 
Sbjct: 2   AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIE 61

Query: 101 KAIEGT-------QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAG 152
            AI+         + E L   +      L           K  +  ++    +      
Sbjct: 62  LAIKKAAKELGKPELEKLVEYIDRGAGILV-TNMNPFKLYKFLQQNRQPAPAKPGAVVP 119

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 317

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIE 104
            T K      +   L++      +       KQ Q +R SL     +++ KNT++ KAI 
Sbjct: 7   ATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIR 66

Query: 105 GTQ-----WEALKPCMSGMNAWLFVH 125
           G        E L P + G   ++F  
Sbjct: 67  GHLENNPALEKLLPHIRGNVGFVFTK 92

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 64/233 (27%)

Query: 1   MEVSLLSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHI-RAAISR---TKKEETVDTVK 56
           +E SL  L  ++    +   + L  F       PP  HI    +S       +  V  V 
Sbjct: 359 IESSLNVLEPAE---YRKMFDRLSVF-------PPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 57  THLENCHLIAAIKYKGFTVK---QFQDLRRSLPENTKL---IVAKNTLVYKAIEG-TQWE 109
             L    L+   + K  T+     + +L+  L     L   IV      Y   +     +
Sbjct: 409 NKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDH----YNIPKTFDSDD 463

Query: 110 ALKPCMSGMNAWLFVHTEEIPAAIKPY--RNFQKEKKLEENDFAGAVFEGKFYAPGDFKA 167
            + P +     + + H          +  +N +  +++         F   F    DF+ 
Sbjct: 464 LIPPYLDQ---YFYSHI--------GHHLKNIEHPERMTL-------FRMVFL---DFRF 502

Query: 168 LESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKKLEDESGQ 220
           LE          K+      +A    G++     + L  LK Y   + D   +
Sbjct: 503 LE---------QKIRHD--STAWNASGSIL----NTLQQLKFYKPYICDNDPK 540

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
1zav_A	180	50S ribosomal protein L10; ribosome structure and	100.0
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	100.0
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	100.0
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	99.87
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	99.85
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	99.84
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	99.84
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	99.8
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	99.79
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	99.78

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=100.00  E-value=1.3e-46  Score=311.87  Aligned_cols=174  Identities=30%  Similarity=0.491  Sum_probs=164.7

Q ss_pred             ccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC----CEEEEEchHHHHHHHhcCCcccccccccC
Q 027713           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG  117 (220)
Q Consensus        42 a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~----~~l~VvKNtL~k~Al~~t~~~~L~~~l~G  117 (220)
                      +|+|++|.++|++|++.|++|+.++++||+|++++++++||++||+.    ++++|+||||+++|+++++++++.++|+|
T Consensus         2 ~m~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G   81 (180)
T 1zav_A            2 MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCChhhHHHhCcC
Confidence            68899999999999999999999999999999999999999999864    89999999999999999999999999999


Q ss_pred             ceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 027713          118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQ  197 (220)
Q Consensus       118 ~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~  197 (220)
                      |++++|++++||.+++|++.+|+|+++.+++.|+||++||+++|.++|++||+|||+|+|+|+|+|+|++|+++++++|+
T Consensus        82 ~~a~~fs~~~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~l~~~l~  161 (180)
T 1zav_A           82 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALS  161 (180)
T ss_dssp             SEEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997356778999999999998212689999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhhh
Q 027713          198 APARDLLMVLKAYAKKLE  215 (220)
Q Consensus       198 ~~~~~L~~~L~~~~~k~e  215 (220)
                      +++++++++|+++++|+|
T Consensus       162 ~~~~~l~~~l~a~~~k~~  179 (180)
T 1zav_A          162 GILRNLVYVLNAIKEKKS  179 (180)
T ss_dssp             HHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999999876

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=100.00  E-value=2.4e-45  Score=300.46  Aligned_cols=163  Identities=26%  Similarity=0.401  Sum_probs=150.3

Q ss_pred             hccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCCcccccccccCce
Q 027713           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMN  119 (220)
Q Consensus        41 ~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~~~~L~~~l~G~t  119 (220)
                      |+|+|++|.++|++|++.|++|+.++++||+|++++|+++||++||+. ++++|+||||+++|+++++|+++.++|+|||
T Consensus         1 m~~~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~t   80 (165)
T 3sgf_H            1 MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT   80 (165)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCTTTCTTCSTTCCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCCcchhHHhCcCCE
Confidence            889999999999999999999999999999999999999999999985 9999999999999999999999999999999


Q ss_pred             EEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhch
Q 027713          120 AWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAP  199 (220)
Q Consensus       120 alvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~~~  199 (220)
                      +++|++ +||.+++|++.+|+|+++  ++.++||++||+++|.++|++||+|||+|+|+++|+|+|++|+++        
T Consensus        81 ai~fs~-~dp~~~aK~l~~f~K~~~--~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~--------  149 (165)
T 3sgf_H           81 LIAYSM-EHPGAAARLFKEFAKANA--KFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAG--------  149 (165)
T ss_dssp             CCCEEE-ECSSCSHHHHHHHHHHGG--GSSSCCTTCCCCTTTTCCCCCCCTTTTTTCTHHHHTTTTTTTSTT--------
T ss_pred             EEEEeC-CCHHHHHHHHHHHHHhCC--CcEEEEEEEcCEEeCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH--------
Confidence            999997 456678999999999985  689999999999999999999999999999999999999999871        


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 027713          200 ARDLLMVLKAYAKKLED  216 (220)
Q Consensus       200 ~~~L~~~L~~~~~k~e~  216 (220)
                        +|+++|+++++|+|+
T Consensus       150 --~l~~~l~a~~~~k~~  164 (165)
T 3sgf_H          150 --KLVRTLAAVRDAKEA  164 (165)
T ss_dssp             --TTTTTTTSGGGTCC-
T ss_pred             --HHHHHHHHHHHhhcc
Confidence              455556667777654

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=99.87  E-value=2.7e-23  Score=187.17  Aligned_cols=127  Identities=20%  Similarity=0.277  Sum_probs=28.9

Q ss_pred             chhhhccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcCC--ccccccc
Q 027713           37 THIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ--WEALKPC  114 (220)
Q Consensus        37 ~~~~~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t~--~~~L~~~  114 (220)
                      +++.|.+.+++|.++|++|++.|++|+.++++||+||+++++++||++||+.++++|+|||||++|+++++  ++.|.++
T Consensus         5 ~~~~~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~le~L~~~   84 (348)
T 1vq8_G            5 SERKTETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLEDLNGY   84 (348)
T ss_dssp             -------CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC-----------
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCcchHHHHHh
Confidence            56778999999999999999999999999999999999999999999999889999999999999999998  8999999


Q ss_pred             ccCceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHh
Q 027713          115 MSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKAL  168 (220)
Q Consensus       115 l~G~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~l  168 (220)
                      |+|+++++|++ +||.+++|++.+|.+..    +...|++.++.++-+.+...+
T Consensus        85 LkG~tal~Ft~-~Dp~~vaK~l~~f~~~~----pAr~GaiAp~dV~IpaG~t~~  133 (348)
T 1vq8_G           85 ITGQVGLIGTD-DNPFSLFQELEASKTPA----PIGAGEVAPNDIVIPEGDTGV  133 (348)
T ss_dssp             ------------------------------------------------------
T ss_pred             ccCCEEEEEeC-CCHHHHHHHHHHhcccc----hhhcCCcCCceEEeCCCCCCC
Confidence            99999999997 56778999999997543    578999999999988887554

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=99.85  E-value=2.7e-21  Score=172.05  Aligned_cols=115  Identities=23%  Similarity=0.345  Sum_probs=93.0

Q ss_pred             hccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhc-----CCcccccccc
Q 027713           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALKPCM  115 (220)
Q Consensus        41 ~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~-----t~~~~L~~~l  115 (220)
                      |+++|++|.++|++|++.|++|+.++|+||+|++++|+++||++||+.+.++|+|||||++|+++     ++++.|.++|
T Consensus         1 M~~~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L   80 (312)
T 3u5i_q            1 MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFV   80 (312)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGC
T ss_pred             CCCcHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhc
Confidence            78899999999999999999999999999999999999999999998889999999999999999     5899999999


Q ss_pred             cCceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeec
Q 027713          116 SGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFY  160 (220)
Q Consensus       116 ~G~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l  160 (220)
                      +|+++++|++ +||.+++|+|.+|....    ..-.|.+....++
T Consensus        81 ~G~~gl~Ft~-~dp~~v~k~l~~~k~~~----pAr~GaiAp~dV~  120 (312)
T 3u5i_q           81 KGNVGFVFTN-EPLTEIKNVIVSNRVAA----PARAGAVAPEDIW  120 (312)
T ss_dssp             CSSEEEEEES-SCHHHHHHHHHTSSCCC-----------------
T ss_pred             cCCEEEEEEC-CCHHHHHHHHHhccCcc----cccCCCcCCceEE
Confidence            9999999997 57888999998884321    2344444444443

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=99.84  E-value=4.7e-21  Score=162.28  Aligned_cols=95  Identities=20%  Similarity=0.241  Sum_probs=90.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcC-------CcccccccccC
Q 027713           45 RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-------QWEALKPCMSG  117 (220)
Q Consensus        45 r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t-------~~~~L~~~l~G  117 (220)
                      +++|.++|++|++.+++|+.++++||+|++++|+++||++||++++++|+|||||++|++++       +++.|.++|+|
T Consensus         2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G   81 (213)
T 3jsy_A            2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER   81 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred             chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence            48999999999999999999999999999999999999999988899999999999999998       89999999999


Q ss_pred             ceEEEEeecCChhHHhHHHHHHH
Q 027713          118 MNAWLFVHTEEIPAAIKPYRNFQ  140 (220)
Q Consensus       118 ~talvfs~~~~~~~~aK~l~~f~  140 (220)
                      +++++|++ +||.+++|+|.+|.
T Consensus        82 ~~~l~Ft~-~dp~~v~k~l~~~~  103 (213)
T 3jsy_A           82 GAAILVTD-MNPFKLYKLLEENK  103 (213)
T ss_dssp             SEEEEEES-SCHHHHHHHHHHSC
T ss_pred             CeEEEEeC-CCHHHHHHHHHHcC
Confidence            99999997 57888999999884

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=99.84  E-value=4.7e-22  Score=174.95  Aligned_cols=120  Identities=20%  Similarity=0.198  Sum_probs=92.3

Q ss_pred             ccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcCC-------cccccc
Q 027713           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQ-------WEALKP  113 (220)
Q Consensus        42 a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t~-------~~~L~~  113 (220)
                      ...+++|.++|++|++.|++|+.++++||+|++++|+++||++||+. ++++|+|||||++|+++++       +++|.+
T Consensus         2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~   81 (284)
T 3a1y_G            2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE   81 (284)
T ss_dssp             CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence            34679999999999999999999999999999999999999999976 8999999999999999976       899999


Q ss_pred             cccCceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHH
Q 027713          114 CMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFK  166 (220)
Q Consensus       114 ~l~G~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~  166 (220)
                      +|+|+++++|++ +||.+++|++.+|...    .+...|++.++.++-+.+-.
T Consensus        82 ~l~G~~al~Ft~-~dp~~vak~l~~f~~~----~~ar~Gaia~~dv~ip~g~~  129 (284)
T 3a1y_G           82 YIDRGAGILVTN-MNPFKLYKFLQQNRQP----APAKPGAVVPKDVVVPAGPT  129 (284)
T ss_dssp             CCCTTEEEEEES-SCHHHHHHHHHHCCCC------------------------
T ss_pred             hcCCCEEEEEEC-CCHHHHHHHHHHhcch----hhhhcCCccceeEEecCCCC
Confidence            999999999997 5788899999998533    46789999999988776663

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.80  E-value=1.7e-20  Score=168.70  Aligned_cols=99  Identities=20%  Similarity=0.217  Sum_probs=89.4

Q ss_pred             hccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCC-CEEEEEchHHHHHHHhcC-------Cccccc
Q 027713           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGT-------QWEALK  112 (220)
Q Consensus        41 ~a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~-~~l~VvKNtL~k~Al~~t-------~~~~L~  112 (220)
                      |...+++|.++|++|++.|++|+.++|+||+|++++|+++||++||+. ++++|+|||||++|++++       +++.|.
T Consensus         1 m~~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~   80 (339)
T 3j21_k            1 MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLI   80 (339)
T ss_dssp             -----CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHH
Confidence            567789999999999999999999999999999999999999999987 899999999999999987       689999


Q ss_pred             ccccCceEEEEeecCChhHHhHHHHHHH
Q 027713          113 PCMSGMNAWLFVHTEEIPAAIKPYRNFQ  140 (220)
Q Consensus       113 ~~l~G~talvfs~~~~~~~~aK~l~~f~  140 (220)
                      ++|+|+++++|++ +||.+++|+|.+|.
T Consensus        81 ~~L~G~~~l~Ft~-~dp~~v~k~l~~~~  107 (339)
T 3j21_k           81 NYIEGGAGILVTT-MNPFKLYKFLQQNR  107 (339)
T ss_dssp             CCCCTTEEEEEES-SCHHHHHHHHHHSC
T ss_pred             HHhcCCeEEEEEC-CCHHHHHHHHHHcC
Confidence            9999999999997 67888999999883

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.79  E-value=8e-21  Score=169.32  Aligned_cols=117  Identities=22%  Similarity=0.255  Sum_probs=0.0

Q ss_pred             ChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCCCCEEEEEchHHHHHHHhcC-----CcccccccccCc
Q 027713           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALKPCMSGM  118 (220)
Q Consensus        44 ~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~~~~l~VvKNtL~k~Al~~t-----~~~~L~~~l~G~  118 (220)
                      .+++|.++|++|++.|++|+.++|+||+||+++|+++||++||+.++++|+|||||++|++++     +++.|.++|+|+
T Consensus         6 ~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~   85 (317)
T 2zkr_g            6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGN   85 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhccCCC
Confidence            468999999999999999999999999999999999999999988999999999999999999     899999999999


Q ss_pred             eEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhH
Q 027713          119 NAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDF  165 (220)
Q Consensus       119 talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v  165 (220)
                      ++++|++ +|+.+++|++.+|+...    +...|.+.+..++=+.+-
T Consensus        86 ~al~Ft~-~Dp~~vaK~l~~f~~~~----pAr~GaiAp~dV~Ip~G~  127 (317)
T 2zkr_g           86 VGFVFTK-EDLTEIRDMLLANKVPA----AARAGAIAPCEVTVPAQN  127 (317)
T ss_dssp             -----------------------------------------------
T ss_pred             EEEEEEC-CCHHHHHHHHHHhCccc----hhccCCcCCceEEeCCCC
Confidence            9999997 56778999999986443    345666666655544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1zava1	177	d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermot	9e-36

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]} Length = 177

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

 Score =  122 bits (307), Expect = 9e-36
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 4/175 (2%)

Query: 43  ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNTL 98
           ++R +KE  V  +    +   LI    + GFTV    +LR  L E      +  V KNTL
Sbjct: 2   LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 61

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGK 158
           +  A++  ++E  +  + G  A L+V   +   A+K   NF K+KK + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 121

Query: 159 FYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQAPARDLLMVLKAYAKK 213
            +   + + +  +P++ E+YA L+G ++    GLV  L    R+L+ VL A  +K
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEK 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	100.0

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.1e-46  Score=304.17  Aligned_cols=173  Identities=30%  Similarity=0.493  Sum_probs=165.2

Q ss_pred             ccChhHHHHHHHHHHHHHhcCCeEEEEEeCCCChhhHHHHHHhcCC----CCEEEEEchHHHHHHHhcCCcccccccccC
Q 027713           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNTLVYKAIEGTQWEALKPCMSG  117 (220)
Q Consensus        42 a~~r~~K~~~v~~l~e~l~~s~~v~vv~y~gl~~~~~~~LR~~Lr~----~~~l~VvKNtL~k~Al~~t~~~~L~~~l~G  117 (220)
                      +|+|++|+++|+++.+.|++++.++++||+|++++++++||++||+    +++++|+||||+++|+++++++.+.++|.|
T Consensus         1 mm~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t~~~~l~~~l~g   80 (177)
T d1zava1           1 MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG   80 (177)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcCCcchhhHHHhh
Confidence            5899999999999999999999999999999999999999999985    489999999999999999999999999999


Q ss_pred             ceEEEEeecCChhHHhHHHHHHHhhcCcCCcceeeeeeCCeecCHhhHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 027713          118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGSAIGLVGTLQ  197 (220)
Q Consensus       118 ~talvfs~~~~~~~~aK~l~~f~K~~~~~~l~l~gg~veg~~l~~~~v~~lakLPs~e~l~aqlv~~L~~p~~~l~~~L~  197 (220)
                      +++++|+.++||.+++|++.+|+|+++.+.+.++||++||++++.+++++||+|||+|||+++|+|+|++|+++++++|+
T Consensus        81 ~~a~~~~~~~d~~~~aK~l~~f~k~~k~~~~~i~gg~~eg~~l~~~~i~~la~LPs~eel~a~l~~~L~ap~~~l~~~L~  160 (177)
T d1zava1          81 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALS  160 (177)
T ss_dssp             SEEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeecCCchhhhhHHHHHhhhccccccceeEEEecCcccCHHHHHHHhcCCCHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999986677888999999999998655689999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhh
Q 027713          198 APARDLLMVLKAYAKKL  214 (220)
Q Consensus       198 ~~~~~L~~~L~~~~~k~  214 (220)
                      +++++|+++|+++.+|+
T Consensus       161 ~~~~~l~~~L~a~~~kk  177 (177)
T d1zava1         161 GILRNLVYVLNAIKEKK  177 (177)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            99999999999999874