Citrus Sinensis ID: 027719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MSNCSSSLVEERWIKEPCKSSAGISWKRSCFSLESLYHHQAKQDPSLYIFVAVFLAFASFFLHRVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPDFTSSIGNPVDSSPWSSQDFEQQMGQQPASELFKDILPTDLPKIPKKQKRKKKSSNNSPKSSSSSSRSSRAAKTKATYSEMEKSNIQM
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccEEEEEccccccccccHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHccccccccccccEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccEccccccccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msncssslveerwikepckssagiswkrsCFSLESLyhhqakqdpsLYIFVAVFLAFASFFLHRVVIRTPRMATKMKGIYKSFKYISQIFVVKeremeigyptdvkhvahigwdgqsgsapswmnefkaapdftssignpvdsspwssqdfeqqmgqqpaselfkdilptdlpkipkkqkrkkkssnnspkssssssrssraakTKATYSEMEKSNIQM
Flexible Loop (DISEMBL)
MSNCSSSLVEERWikepckssagisWKRSCFSLESLYHHQAKQDPSLYIFVAVFLAFASFFLHRVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPDFTSSIGNPVDSSPWSSQDFEQQMGQQPASELFKDILPTdlpkipkkqkrkkkssnnspkssssssrssraaktkatysemeksniqm
Low Complexity Region (SEG)
MSNCSSSLVEERWIKEPCKSSAGISWKRSCFSLESLYHHQAKQDPSLYIfvavflafasfflHRVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPDFTSSIGNPVDSSPWSSQDFEQQMGQQPASELFKDILPTDLpkipkkqkrkkkssnnspkssssssrssraaktkaTYSEMEKSNIQM
Disordered region (IsUnstruct)
***********RWIKEPCKSSAGISWKRSCFSLESLYHHQAKQDPSLYIFVAVFLAFASFFLHRVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDG********************************************************************************************************
Disordered Region (DISOPRED)
******S***ERWIKEPCKSSAGISWKRSCFSLESLYHHQAKQDPSLYIFVAVFLAFASFFLHRVVI*********KGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWM***********************************************************************************************
Disordered Region (DISEMBL)
**********ERWIKEPCKSSAGISWKRSCFSLESLYHHQAKQDPSLYIFVAVFLAFASFFLHRVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPDFTSSIGNPV*****************PASELFKDILPTDLPKI********************************************
Disordered Region (DISPRO)
*********E**WIKEPCKSSAGISWKRSCFSLESLYHHQAKQDPSLYIFVAVFLAFASFFLHRVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGS****************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNCSSSLVEERWIKEPCKSSAGISWKRSCFSLESLYHHQAKQDPSLYIFVAVFLAFASFFLHRVVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAPDFTSSIGNPVDSSPWSSQDFEQQMGQQPASELFKDILPTDLPKIPKKQKRKKKSSNNSPKSSSSSSRSSRAAKTKATYSEMEKSNIQM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
225444367	160	PREDICTED: uncharacterized protein LOC10	0.675	0.925	0.693	1e-42
224078691	157	predicted protein [Populus trichocarpa]	0.474	0.662	0.718	2e-39
356536041	186	PREDICTED: uncharacterized protein LOC10	0.657	0.774	0.594	2e-39
255554969	161	conserved hypothetical protein [Ricinus	0.675	0.919	0.596	4e-33
449454718	159	PREDICTED: uncharacterized protein LOC10	0.520	0.716	0.590	4e-33
242078389	161	hypothetical protein SORBIDRAFT_07g00515	0.529	0.720	0.547	2e-24
222619616	1010	hypothetical protein OsJ_04251 [Oryza sa	0.762	0.165	0.435	2e-23
218189457	721	hypothetical protein OsI_04615 [Oryza sa	0.762	0.231	0.435	2e-23
49389252	148	hypothetical protein [Oryza sativa Japon	0.484	0.716	0.512	2e-22
222629602	165	hypothetical protein OsJ_16255 [Oryza sa	0.369	0.490	0.635	2e-22

>gi|225444367|ref|XP_002266933.1| PREDICTED: uncharacterized protein LOC100258839 [Vitis vinifera] gi|302144074|emb|CBI23179.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 121/160 (75%), Gaps = 12/160 (7%)

Query: 72  MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAP 131
           MATKMKGIYK FKYISQIFVVKEREMEIGYPTDVKHVAHIGWDG SGSAPSWMNE+K+  
Sbjct: 1   MATKMKGIYKGFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGPSGSAPSWMNEYKSTH 60

Query: 132 DFTSS----------IGNPVDSSPWSSQDFEQQMGQQPASELFKDILPTDLPKIPKKQKR 181
           DF+SS            N V  S WSSQDFEQ MGQ P SE+FKD  PTD+P IPKK KR
Sbjct: 61  DFSSSSLGSFIEPRDTNNIVARSTWSSQDFEQSMGQHPVSEMFKDCPPTDVPNIPKKHKR 120

Query: 182 KKKSSNNSPKSSSSSSRSSRAA-KTKATYSEME-KSNIQM 219
           KK  S +SPKSSSSS   S  A K+KATY E+E  SN+Q+
Sbjct: 121 KKTKSTSSPKSSSSSVSRSSRALKSKATYMELETTSNLQL 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078691|ref|XP_002305604.1| predicted protein [Populus trichocarpa] gi|222848568|gb|EEE86115.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 88/110 (80%), Gaps = 6/110 (5%)

Query: 72  MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAP 131
           MATK+KGIYK FKYISQIFVVKEREMEIGYPTDVKHVAHIGWDG SGSAPSWMNEFK  P
Sbjct: 1   MATKIKGIYKGFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGHSGSAPSWMNEFKTPP 60

Query: 132 DF-TSSIGNPVDS-----SPWSSQDFEQQMGQQPASELFKDILPTDLPKI 175
           DF T+++ NP DS     SPWSSQDF+  +G Q    +F DI P+DLP +
Sbjct: 61  DFSTTTVANPRDSSSVILSPWSSQDFDHSLGHQTMPNVFNDIPPSDLPNV 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536041|ref|XP_003536549.1| PREDICTED: uncharacterized protein LOC100788423 [Glycine max]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/153 (59%), Positives = 111/153 (72%), Gaps = 9/153 (5%)

Query: 72  MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAP 131
           MAT +KGIYKSFKYI+QIFVVKEREMEIGYPTDVKHVAHIGWDG SG+ PSWMN+FK AP
Sbjct: 1   MATTLKGIYKSFKYITQIFVVKEREMEIGYPTDVKHVAHIGWDGPSGTGPSWMNDFKTAP 60

Query: 132 DFTSSIGNPVD---------SSPWSSQDFEQQMGQQPASELFKDILPTDLPKIPKKQKRK 182
           DF++S+GN  +         ++ WSSQDFE   G QP S ++K I    +   PKK K+K
Sbjct: 61  DFSTSLGNLGELSDPNAMAVTTSWSSQDFEVSTGSQPTSNIYKGIPSAGVSHAPKKSKKK 120

Query: 183 KKSSNNSPKSSSSSSRSSRAAKTKATYSEMEKS 215
           K  S +  +  S+SSR SRA K+KATYS+ E +
Sbjct: 121 KTKSASPSELVSASSRHSRATKSKATYSDREAT 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554969|ref|XP_002518522.1| conserved hypothetical protein [Ricinus communis] gi|223542367|gb|EEF43909.1| conserved hypothetical protein [Ricinus communis]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 117/161 (72%), Gaps = 13/161 (8%)

Query: 72  MATKMKGIYK-SFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAA 130
           MATK+KGIYK SFK+ISQIFVVKEREMEIGYPTDVKHVAHIGWDG SGSAPSWMN+FK  
Sbjct: 1   MATKIKGIYKGSFKFISQIFVVKEREMEIGYPTDVKHVAHIGWDGPSGSAPSWMNDFKTP 60

Query: 131 PDFTS-SIGNPVDS------SPWSSQDFEQQMGQQPAS-ELFKDILPTDLPKIPKKQKRK 182
           PDF+S ++ N  DS      SPWSSQDF+Q +G QP S + F +I+P+  P     +K K
Sbjct: 61  PDFSSTTLANTRDSDSIANFSPWSSQDFDQSIGSQPMSTKSFSNIVPSSDPPSSIPKKSK 120

Query: 183 KKSSNNSPKSSSSSSRSSR---AAKTKATYSEME-KSNIQM 219
           +K  ++S  +  SSS S     A K+KATY E+E  SN+Q+
Sbjct: 121 RKKKSSSSPTFLSSSSSRSSLAAMKSKATYRELESTSNLQV 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454718|ref|XP_004145101.1| PREDICTED: uncharacterized protein LOC101211354 [Cucumis sativus] gi|449472647|ref|XP_004153657.1| PREDICTED: uncharacterized protein LOC101222050 [Cucumis sativus] gi|449526766|ref|XP_004170384.1| PREDICTED: uncharacterized LOC101222050 [Cucumis sativus]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 92/127 (72%), Gaps = 13/127 (10%)

Query: 72  MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAP 131
           M+ K+KGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDG SG+APSWMNEFK AP
Sbjct: 1   MSNKLKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGPSGTAPSWMNEFKTAP 60

Query: 132 DFTSS-----IGNPVDSS--------PWSSQDFEQQMGQQPASELFKDILPTDLPKIPKK 178
           +  S+     I +  DSS         WSS DF+Q M +Q  S+ F ++  T++P +P K
Sbjct: 61  EHFSAASFGDISDRRDSSSTAVTAPTTWSSLDFDQAMLRQQTSDFFGELPRTEIPNLPTK 120

Query: 179 QKRKKKS 185
            K+K ++
Sbjct: 121 PKKKTRN 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242078389|ref|XP_002443963.1| hypothetical protein SORBIDRAFT_07g005150 [Sorghum bicolor] gi|241940313|gb|EES13458.1| hypothetical protein SORBIDRAFT_07g005150 [Sorghum bicolor]

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 84/126 (66%), Gaps = 10/126 (7%)

Query: 72  MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSA--PSWMNEFKA 129
           MA KMKG++K  K ISQIFVVKE +MEIGYPTDVKHVAHIGWD  +GSA  PSWMN+ K 
Sbjct: 1   MAYKMKGVFKGLKVISQIFVVKEHQMEIGYPTDVKHVAHIGWDSPTGSAASPSWMNDMKG 60

Query: 130 APDFTS-SIGNPVDSSPW-SSQDFEQQMGQQP-----ASELFKDILPTDLPKIPKKQKRK 182
           +PD +S S G P   + W SSQDFE+     P      S + +     D+PK P+K +RK
Sbjct: 61  SPDCSSLSNGGPSARTSWASSQDFEEPRDISPFGIFSESSVQETTQYPDIPKPPRKSRRK 120

Query: 183 KKSSNN 188
           K S N+
Sbjct: 121 K-SKND 125

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619616|gb|EEE55748.1| hypothetical protein OsJ_04251 [Oryza sativa Japonica Group]

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 105/186 (56%), Gaps = 19/186 (10%)

Query: 51   VAVFLAFASFFLHR-----VVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDV 105
            +A FL FA  + HR        +   MA KMKG++K  K ISQIFVVKE +MEIGYPTDV
Sbjct: 820  LACFLYFAKMYEHRKKWDSGCEQHLPMAYKMKGVFKGLKVISQIFVVKEHQMEIGYPTDV 879

Query: 106  KHVAHIGWDGQSGSA--PSWMNEFKAAPDFTSSIGN--PVDSSPWSSQ----DFEQQMGQ 157
            KHV HIGWD  +GSA  PSWMN+ K +PD+ SS+ N  P   + W+SQ    DF+     
Sbjct: 880  KHVTHIGWDSPTGSAASPSWMNDMKGSPDY-SSLNNFGPSTGTSWTSQVCSTDFDHPQDI 938

Query: 158  QPASELFKDI-----LPTDLPKIPKKQKRKKKSSNNSPKSSSSSSRSSRAAKTKATYSEM 212
             P     ++       P      P ++ R+KKS NNSP +SS SSRS       +T   +
Sbjct: 939  SPFGLYVENAGKEANPPHPDIPKPPRKSRRKKSKNNSPTASSRSSRSRSKRSFSSTADTV 998

Query: 213  EKSNIQ 218
              ++IQ
Sbjct: 999  VDNSIQ 1004

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189457|gb|EEC71884.1| hypothetical protein OsI_04615 [Oryza sativa Indica Group]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 105/186 (56%), Gaps = 19/186 (10%)

Query: 51  VAVFLAFASFFLHR-----VVIRTPRMATKMKGIYKSFKYISQIFVVKEREMEIGYPTDV 105
           +A FL FA  + HR        +   MA KMKG++K  K ISQIFVVKE +MEIGYPTDV
Sbjct: 531 LACFLYFAKMYEHRKKWDSGCEQHLPMAYKMKGVFKGLKVISQIFVVKEHQMEIGYPTDV 590

Query: 106 KHVAHIGWDGQSGSA--PSWMNEFKAAPDFTSSIGN--PVDSSPWSSQ----DFEQQMGQ 157
           KHV HIGWD  +GSA  PSWMN+ K +PD+ SS+ N  P   + W+SQ    DF+     
Sbjct: 591 KHVTHIGWDSPTGSAASPSWMNDMKGSPDY-SSLNNFGPSTGTSWTSQVCSTDFDHPQDI 649

Query: 158 QPASELFKDI-----LPTDLPKIPKKQKRKKKSSNNSPKSSSSSSRSSRAAKTKATYSEM 212
            P     ++       P      P ++ R+KKS NNSP +SS SSRS       +T   +
Sbjct: 650 SPFGLYVENAGKEANPPHPDIPKPPRKSRRKKSKNNSPTASSRSSRSRSKRSFSSTADTV 709

Query: 213 EKSNIQ 218
             ++IQ
Sbjct: 710 VDNSIQ 715

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49389252|dbj|BAD25214.1| hypothetical protein [Oryza sativa Japonica Group]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 77/125 (61%), Gaps = 19/125 (15%)

Query: 72  MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAP 131
           MA KMKGI+K  K ISQ+FV KE EMEIGYPTDVKHVAHIG  G S ++PSWMNEF    
Sbjct: 1   MAIKMKGIFKGLKIISQMFVHKEHEMEIGYPTDVKHVAHIGL-GTSDTSPSWMNEFTGTE 59

Query: 132 DFTS---SIGNPVDSSPWSSQDFEQQMGQQPASELFKDILPT----------DLPKIPKK 178
           D ++   S   P   + W+S DFE     QP S L  +ILP           D+P+ P+K
Sbjct: 60  DLSTGSLSTTAPSRQTSWASLDFE-----QPRSMLPIEILPEKSGQEAPSCPDIPRGPRK 114

Query: 179 QKRKK 183
            +RKK
Sbjct: 115 VRRKK 119

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629602|gb|EEE61734.1| hypothetical protein OsJ_16255 [Oryza sativa Japonica Group]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 66/85 (77%), Gaps = 4/85 (4%)

Query: 72  MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSA-PSWMNEFKAA 130
           MA KMKGI+K  K ISQIFVVKE EM+IG PTDVKHVAHIGWDG +G+A PSWMN+ +A+
Sbjct: 1   MAYKMKGIFKGLKVISQIFVVKEHEMQIGSPTDVKHVAHIGWDGLTGNASPSWMNDIRAS 60

Query: 131 PDFTSSIGN--PVDSSPWSSQDFEQ 153
            +   S+GN  P   + W+SQDF+Q
Sbjct: 61  SELL-SLGNFAPSAGTSWASQDFDQ 84

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2135373	156	RIC10 "AT4G04900" [Arabidopsis	0.447	0.628	0.555	2.9e-23
TAIR|locus:4010713898	156	AT4G21745 "AT4G21745" [Arabido	0.433	0.608	0.509	3.1e-19
TAIR|locus:4010713574	128	AT1G61795 "AT1G61795" [Arabido	0.356	0.609	0.546	8.3e-19
TAIR|locus:1009023333	216	RIC7 "AT4G28556" [Arabidopsis	0.328	0.333	0.571	5.8e-18
TAIR|locus:2051033	224	RIC1 "AT2G33460" [Arabidopsis	0.378	0.370	0.488	6.7e-17
TAIR|locus:2054820	212	RIC6 "ROP-interactive CRIB mot	0.328	0.339	0.546	4.7e-16
TAIR|locus:2090880	193	RIC5 "AT3G23380" [Arabidopsis	0.406	0.461	0.439	4.7e-16
TAIR|locus:2018369	220	RIC3 "ROP-interactive CRIB mot	0.328	0.327	0.472	4.9e-14
TAIR|locus:1009023072	177	AT1G03982 "AT1G03982" [Arabido	0.214	0.265	0.6	1.2e-10
TAIR|locus:2171332	153	RIC4 "ROP-interactive CRIB mot	0.360	0.516	0.333	3.3e-08

TAIR|locus:2135373 RIC10 "AT4G04900" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 60/108 (55%), Positives = 72/108 (66%)

Query:    72 MATKMKGIYKSFKYISQIFVV-KER-EMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKA 129
             M+ KMKGIYK FK ISQIF V KER E+EIG+PTDVKHVAHIGW+G SGSAP WM+EFK 
Sbjct:     1 MSMKMKGIYKGFKCISQIFAVEKERDEIEIGFPTDVKHVAHIGWEGSSGSAPGWMSEFKV 60

Query:   130 APDFTS----SIGNPVDSSPW----SSQDFEQQMGQQPASELFKDILP 169
               +  S    S  N   S+ +    SS DF+Q   Q+  S+  +DI P
Sbjct:    61 GAELLSPRPSSFSNARPSTSFFTSSSSTDFDQGSSQRGISDTLRDIPP 108

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IMP

TAIR|locus:4010713898 AT4G21745 "AT4G21745" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 53/104 (50%), Positives = 67/104 (64%)

Query:    72 MATKMKGIYKSFKYISQIFVVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAAP 131
             MA KMKGIYKSFK I  +FV KER++EIG+PT+VKHVAHIGW G SGS P WM++FKA  
Sbjct:     1 MAMKMKGIYKSFKSI--MFVGKERDLEIGHPTEVKHVAHIGW-GSSGSDPGWMSDFKAGA 57

Query:   132 DF----TSSIGNPVDSSPW--SSQDFEQQMGQQPASELFKDILP 169
             +F    TSS  +   S  +  +S   E    Q   S+  +D+ P
Sbjct:    58 EFLSPRTSSFSHTRHSDSFFTTSDSTEFDQDQLNISDRIRDVPP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713574 AT1G61795 "AT1G61795" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 47/86 (54%), Positives = 60/86 (69%)

Query:    72 MATKMKGIY-KSFKYISQIF-VVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKA 129
             MAT+ KG+Y KSFK  S IF V +E EMEIGYPTDV+HV+HIGWD  S SAPSW++EFK 
Sbjct:     1 MATRFKGLYNKSFKCFSDIFDVEEEEEMEIGYPTDVRHVSHIGWDSSSSSAPSWLHEFKT 60

Query:   130 APDFTSSIGNPVDSSPWSSQDFEQQM 155
             +    +++  P  +S W  QD +  M
Sbjct:    61 S----NNVLEP--NSSWPFQDLKSAM 80

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023333 RIC7 "AT4G28556" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 44/77 (57%), Positives = 54/77 (70%)

Query:    73 ATKMKGIYKSFKYISQIFVV---KEREMEIGYPTDVKHVAHIGWDGQS--GSAPSWMNEF 127
             +TKMK + K  +YISQ+F +   KE EM+IG PTDVKHVAHIGWDG S   +APSWMN+F
Sbjct:     7 STKMKSLLKGLRYISQVFAIEGEKEEEMQIGNPTDVKHVAHIGWDGPSDNATAPSWMNDF 66

Query:   128 KAAPDFTSSIGNPVDSS 144
             K++P   S  G   D S
Sbjct:    67 KSSPVMESIQGLGEDDS 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

TAIR|locus:2051033 RIC1 "AT2G33460" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 41/84 (48%), Positives = 57/84 (67%)

Query:    72 MATKMKGIYKSFKYISQIF-VVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAA 130
             MAT MKG+ K  +YI+QIF   KE+EM+IG+PTDVKHVAHIG DG + + PSWMN+FK  
Sbjct:     1 MATTMKGLLKGLRYITQIFDEEKEQEMQIGFPTDVKHVAHIGSDGPTNTTPSWMNDFKTQ 60

Query:   131 PDFTSSIGNPVDSSPWSSQDFEQQ 154
                   + +  +S+ ++ Q   Q+
Sbjct:    61 EHEKGQVVSRGNSNKYNPQGTNQR 84

GO:0005515 "protein binding" evidence=IPI

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0010215 "cellulose microfibril organization" evidence=IMP

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2054820 RIC6 "ROP-interactive CRIB motif-containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 41/75 (54%), Positives = 51/75 (68%)

Query:    73 ATKMKGIYKSFKYISQIFVV-KEREMEIGYPTDVKHVAHIGWDGQSGSA--PSWMNEFKA 129
             ++KMK + K  +YISQ+F   KE E++IG PTDVKHVAHIGWDG S +A  PSWM EF +
Sbjct:     7 SSKMKSLLKGLRYISQVFESEKEEEIQIGNPTDVKHVAHIGWDGPSANATAPSWMTEFNS 66

Query:   130 APDFTSSIGNPVDSS 144
                F S+ G   D S
Sbjct:    67 GGGFESAEGVGEDDS 81

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2090880 RIC5 "AT3G23380" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query:    72 MATKMKGIYKSFKYISQIFV-VKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAA 130
             M + MKG+ K  +YI++IF   KE EM+IG PTDVKHVAHIGW+G S + PSWM++FK  
Sbjct:     1 MTSPMKGLLKGLRYIARIFEDEKEPEMQIGIPTDVKHVAHIGWEGPSATTPSWMHDFKPT 60

Query:   131 PDFTSSIGNPVDSSPWSSQDFEQQMGQQPAS 161
                 +      +  P SS + + + G++  S
Sbjct:    61 DQTKTETKGTSNKKPGSSGE-KHRKGRRKTS 90

GO:0005515 "protein binding" evidence=IPI

GO:0009860 "pollen tube growth" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

TAIR|locus:2018369 RIC3 "ROP-interactive CRIB motif-containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 35/74 (47%), Positives = 52/74 (70%)

Query:    72 MATKMKGIYKSFKYISQIF-VVKEREMEIGYPTDVKHVAHIGWDGQSGSAPSWMNEFKAA 130
             MAT +KG+ K  +YI+QIF   K+++M+IG+PTDVKHVAHIG DG + + PSWM +FK  
Sbjct:     1 MAT-VKGLLKGLRYITQIFDEEKDKDMQIGFPTDVKHVAHIGSDGPATNVPSWMGDFKPQ 59

Query:   131 PDFTSSIGNPVDSS 144
              +    + +  D++
Sbjct:    60 ENENGQVVSRADAN 73

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0030834 "regulation of actin filament depolymerization" evidence=IMP

GO:0050848 "regulation of calcium-mediated signaling" evidence=IMP

GO:0050850 "positive regulation of calcium-mediated signaling" evidence=IMP

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

TAIR|locus:1009023072 AT1G03982 "AT1G03982" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/50 (60%), Positives = 36/50 (72%)

Query:    93 KEREMEIGYPTDVKHVAHIGWDGQS--GSAPSWMNEFKAAPDFTSS-IGN 139
             KE EM+IG PTDVKHVAHIGWDG S   + PSWM +FK    ++ + IGN
Sbjct:    11 KEAEMQIGTPTDVKHVAHIGWDGGSVNHNPPSWMKDFKVLGGYSPALIGN 60

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171332 RIC4 "ROP-interactive CRIB motif-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 31/93 (33%), Positives = 49/93 (52%)

Query:    65 VVIRTPRMATKMKGIYKSFKYISQIFVVKERE--------MEIGYPTDVKHVAHIGWDG- 115
             + +  P ++  +  I+KSFK ISQ+F  K+ E        MEIG PT+VKHV+HIGW+  
Sbjct:    57 LAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWESG 116

Query:   116 ---QSGSAPSWMNEFKAAPDFTSSIGNPVDSSP 145
                 +G    W  E    P+  ++  +  + +P
Sbjct:   117 LTAATGPGKGW--EDLIPPELLAAAASKKEINP 147

GO:0009507 "chloroplast" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010215 "cellulose microfibril organization" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006907001 SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (160 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
pfam00786	59	pfam00786, PBD, P21-Rho-binding domain	6e-09
cd00132	42	cd00132, CRIB, PAK (p21 activated kinase) Binding	1e-07
smart00285	36	smart00285, PBD, P21-Rho-binding domain	1e-06

>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain

 Score = 50.1 bits (120), Expect = 6e-09
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 98  EIGYPTDVKHVAHIGWDGQS----GSAPSWMNEFKAAP 131
           EI  PT+ KHV H+G+DGQ+    G  P W     ++ 
Sbjct: 1   EISTPTNFKHVVHVGFDGQTGFFTGLPPEWEKLLPSSG 38

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 59

>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 97  MEIGYPTDVKHVAHIGWDG----QSGSAPSWMNEFKAA 130
           MEI  PTD KH++H+GWDG     +   P   + F+ A
Sbjct: 1   MEISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTA 38

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules. Length = 42

>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 99  IGYPTDVKHVAHIGWDGQSGS----APSWMNEFK 128
           I  PT+ KH+AH+G+DGQ+G        W +  K
Sbjct: 1   ISTPTNFKHIAHVGFDGQTGGFTGLPTEWKSLLK 34

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
cd00132	42	CRIB PAK (p21 activated kinase) Binding Domain (PB	99.12
PF00786	59	PBD: P21-Rho-binding domain; InterPro: IPR000095 T	99.01
smart00285	36	PBD P21-Rho-binding domain. Small domains that bin	98.78
cd01093	46	CRIB_PAK_like PAK (p21 activated kinase) Binding D	98.72
KOG0578	550	consensus p21-activated serine/threonine protein k	92.8
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	84.16

>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=99.12  E-value=2.3e-11  Score=80.71  Aligned_cols=34  Identities=50%  Similarity=1.006  Sum_probs=28.6

Q ss_pred             eeeccCCccceeeeeccCCC--CC-C-CchhHhhhhcC
Q 027719           97 MEIGYPTDVKHVAHIGWDGQ--SG-S-APSWMNEFKAA  130 (219)
Q Consensus        97 MeIG~PTDVKHVAHIGWDg~--s~-n-~PsWm~dfks~  130 (219)
                      |+||.||||+||+|+|||+.  .. + +|.|+.+|+.+
T Consensus         1 ~~IS~Ptnf~H~~HvG~d~~g~~~~~~p~~w~~l~~~~   38 (42)
T cd00132           1 MEISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTA   38 (42)
T ss_pred             CcccCCCCcCcccccCCCCCCccccCCCHHHHHHHHHc
Confidence            78999999999999999974  22 3 56999999874

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.

>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown

Probab=99.01  E-value=7.5e-11  Score=82.16  Aligned_cols=33  Identities=45%  Similarity=0.994  Sum_probs=25.6

Q ss_pred             eeccCCccceeeeeccCCCCC----CCchhHhhhhcC
Q 027719           98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFKAA  130 (219)
Q Consensus        98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfks~  130 (219)
                      +||.|||||||+|||||+.++    .+|+|++.|+..
T Consensus         1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~~~l~~~   37 (59)
T PF00786_consen    1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWEKLLKSS   37 (59)
T ss_dssp             TB---EEEEEEEEEEEETTTTEEES--HHHHHHHHSC
T ss_pred             CCCCCCCCcceeeeccCCCccccccCCHHHHhhcccc
Confidence            699999999999999999775    399999999976

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....

>smart00285 PBD P21-Rho-binding domain

Probab=98.78  E-value=3.5e-09  Score=68.58  Aligned_cols=31  Identities=48%  Similarity=0.947  Sum_probs=26.2

Q ss_pred             eccCCccceeeeeccCCCC----CCCchhHhhhhc
Q 027719           99 IGYPTDVKHVAHIGWDGQS----GSAPSWMNEFKA  129 (219)
Q Consensus        99 IG~PTDVKHVAHIGWDg~s----~n~PsWm~dfks  129 (219)
                      |+.||||+|++|+|||+..    +-+|.|...++.
T Consensus         1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~~~l~~   35 (36)
T smart00285        1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWESLLKT   35 (36)
T ss_pred             CCCCCCCcEEEEeeECCCCCccCCCCHHHHHHhcc
Confidence            8999999999999999832    239999998764

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).

>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=98.72  E-value=6.4e-09  Score=70.14  Aligned_cols=33  Identities=39%  Similarity=0.758  Sum_probs=28.6

Q ss_pred             eeccCCccceeeeeccCCCCC----CCchhHhhhhcC
Q 027719           98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFKAA  130 (219)
Q Consensus        98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfks~  130 (219)
                      +||.||||+|+.|||||..++    -+|.|.+.|+.+
T Consensus         2 ~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW~~ll~~s   38 (46)
T cd01093           2 EISSPTNFKHRVHVGFDPQTGEFTGLPEEWQRLLKSS   38 (46)
T ss_pred             ccCCCCCceeeeEeeECCCCCcccCCCHHHHHHHHHc
Confidence            699999999999999998543    389999999873

This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.80  E-value=0.19  Score=49.53  Aligned_cols=37  Identities=24%  Similarity=0.575  Sum_probs=31.8

Q ss_pred             ceeeccCCccceeeeeccCCCCCC----CchhHhhhhcCCC
Q 027719           96 EMEIGYPTDVKHVAHIGWDGQSGS----APSWMNEFKAAPD  132 (219)
Q Consensus        96 EMeIG~PTDVKHVAHIGWDg~s~n----~PsWm~dfks~~~  132 (219)
                      --+|+.|++++|.-|.|.|.-.++    +..|-.+++..+.
T Consensus        25 ~s~iS~P~nf~h~vHvGfd~~tg~ftGlP~~W~~Ll~~s~i   65 (550)
T KOG0578|consen   25 KSEISSPSNFEHRVHVGFDPVTGEFTGLPKQWQRLLQSSEI   65 (550)
T ss_pred             CCccCCCCCccceeecccCCCcccccCCcHHHHHHhcchhh
Confidence            589999999999999999987664    8899998887544

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=84.16  E-value=0.46  Score=47.00  Aligned_cols=22  Identities=45%  Similarity=1.022  Sum_probs=19.9

Q ss_pred             eeeccCCccceeeeeccCCCCC
Q 027719           97 MEIGYPTDVKHVAHIGWDGQSG  118 (219)
Q Consensus        97 MeIG~PTDVKHVAHIGWDg~s~  118 (219)
                      -.||.||.++|++|+|||..++
T Consensus       234 ~disaPtnf~h~~hVgwd~~~g  255 (569)
T KOG3671|consen  234 ADISAPTNFPHIPHVGWDEQVG  255 (569)
T ss_pred             ccCCCCCCCccccccCCCcCCC
Confidence            5799999999999999998665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	4e-05
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	7e-04

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens} Length = 59

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 93  KEREMEIGYPTDVKHVAHIGWDGQSGSA-----PSWMNEFKAA 130
           K  + +IG P+  KHV+H+GWD Q+G       P   + F  A
Sbjct: 3   KISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRA 45

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B Length = 80

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 94  EREMEIGYPTDVKHVAHIGWDGQSGSA----PSWMNEFKAA 130
           +   EI  P+D +H  H+G+D  +G        W    + +
Sbjct: 1   KERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTS 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	99.2
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	99.04
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	98.91
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	98.77
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	98.73
2lnh_A	65	N-WAsp, neural wiskott-aldrich syndrome protein; p	97.97
1ej5_A	107	WAsp, wiskott-aldrich syndrome protein; alpha heli	97.43
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	96.22

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}

Probab=99.20  E-value=5.6e-12  Score=87.83  Aligned_cols=39  Identities=41%  Similarity=0.742  Sum_probs=33.1

Q ss_pred             cccceeeccCCccceeeeeccCCCCC-----CCchhHhhhhcCC
Q 027719           93 KEREMEIGYPTDVKHVAHIGWDGQSG-----SAPSWMNEFKAAP  131 (219)
Q Consensus        93 KE~EMeIG~PTDVKHVAHIGWDg~s~-----n~PsWm~dfks~~  131 (219)
                      |-..|+||.||||+||+|||||..++     .+|.|+.+|+.++
T Consensus         3 k~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~~g~pp~W~~ll~~sG   46 (59)
T 1cee_B            3 KISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAG   46 (59)
T ss_dssp             CCCTTTSCCCCCCEEEEEECCCTTTCCCCSSCCHHHHHHHTTTT
T ss_pred             CCCCCcccCCCCCCCcceeccCCCCCcccCCCCHHHHHHHHHcC
Confidence            34578999999999999999998654     3999999998744

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}

Probab=99.04  E-value=4.5e-11  Score=76.60  Aligned_cols=31  Identities=32%  Similarity=0.780  Sum_probs=19.4

Q ss_pred             eeccCCccceeeeeccCCCCC----CCchhHhhhh
Q 027719           98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFK  128 (219)
Q Consensus        98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfk  128 (219)
                      +||.||||+||+|||||..++    -+|.|++.|+
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll~   35 (36)
T 2qme_I            1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ   35 (36)
T ss_dssp             CBCCCEEEEEEEEECCBTTTTBCC-----------
T ss_pred             CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHHh
Confidence            699999999999999998766    2899999875

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B

Probab=98.91  E-value=3e-10  Score=83.51  Aligned_cols=37  Identities=27%  Similarity=0.646  Sum_probs=26.2

Q ss_pred             cceeeccCCccceeeeeccCCCCC----CCchhHhhhhcCC
Q 027719           95 REMEIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFKAAP  131 (219)
Q Consensus        95 ~EMeIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfks~~  131 (219)
                      .+|+||.||||+||+|||||..++    -+|.|..+|+.++
T Consensus         2 ~~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~~sG   42 (80)
T 1f3m_A            2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSN   42 (80)
T ss_dssp             -------CCSSEEEEEEEEETTTTEEESCCHHHHHHHHTSC
T ss_pred             CCCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHHHcC
Confidence            468999999999999999998776    3999999998543

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}

Probab=98.77  E-value=1.4e-09  Score=69.18  Aligned_cols=31  Identities=32%  Similarity=0.698  Sum_probs=27.2

Q ss_pred             eeccCCccceeeeeccCCCCC----CCchhHhhhh
Q 027719           98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFK  128 (219)
Q Consensus        98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfk  128 (219)
                      +||.||||+||+|+|||..++    -+|.|.+.|+
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~ll~   35 (35)
T 2odb_B            1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILD   35 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHHHC
T ss_pred             CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHHhC
Confidence            699999999999999998776    3899998763

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}

Probab=98.73  E-value=2.1e-09  Score=68.38  Aligned_cols=30  Identities=27%  Similarity=0.578  Sum_probs=26.3

Q ss_pred             eeccCCccceeeeeccCCCCC----CCchhHhhh
Q 027719           98 EIGYPTDVKHVAHIGWDGQSG----SAPSWMNEF  127 (219)
Q Consensus        98 eIG~PTDVKHVAHIGWDg~s~----n~PsWm~df  127 (219)
                      +||.||||+|++|+|||..++    -+|.|.+.|
T Consensus         1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll   34 (35)
T 2ov2_I            1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI   34 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred             CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence            699999999999999998765    389998876

>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}

Probab=97.97  E-value=1.2e-06  Score=62.56  Aligned_cols=29  Identities=31%  Similarity=0.767  Sum_probs=25.4

Q ss_pred             CccceeeeeccCCCCC-----CCchhHhhhhcCC
Q 027719          103 TDVKHVAHIGWDGQSG-----SAPSWMNEFKAAP  131 (219)
Q Consensus       103 TDVKHVAHIGWDg~s~-----n~PsWm~dfks~~  131 (219)
                      ||++||+|+|||..++     -+|.|...|+.++
T Consensus         2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~ll~~sG   35 (65)
T 2lnh_A            2 SNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCG   35 (65)
T ss_dssp             CCCSSCCSCCEETTTEECGGGCCTTHHHHHHHHT
T ss_pred             CCCEeeeeeeeCCCCCcCCcCCCHHHHHHHHHcC
Confidence            8999999999998876     3999999998754

>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A

Probab=97.43  E-value=4e-05  Score=59.22  Aligned_cols=29  Identities=41%  Similarity=0.774  Sum_probs=24.1

Q ss_pred             CccceeeeeccCCCCC-----CCchhHhhhhcCC
Q 027719          103 TDVKHVAHIGWDGQSG-----SAPSWMNEFKAAP  131 (219)
Q Consensus       103 TDVKHVAHIGWDg~s~-----n~PsWm~dfks~~  131 (219)
                      ||++||+|+|||..++     .+|.|...|+.++
T Consensus         1 tnF~Hv~HVG~D~~tGF~~~glppeWk~LL~~aG   34 (107)
T 1ej5_A            1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAG   34 (107)
T ss_dssp             CCCCCCCCCCCBTTTBCCTTTCCHHHHHHHHHTT
T ss_pred             CCCCcceecccCCCCCcCCCCCCHHHHHHHHHcC
Confidence            7999999999997544     4899999998543

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=96.22  E-value=0.00076  Score=60.12  Aligned_cols=36  Identities=22%  Similarity=0.547  Sum_probs=0.0

Q ss_pred             cceeeccCCccceeeeeccCCCCC----CCchhHhhhhcC
Q 027719           95 REMEIGYPTDVKHVAHIGWDGQSG----SAPSWMNEFKAA  130 (219)
Q Consensus        95 ~EMeIG~PTDVKHVAHIGWDg~s~----n~PsWm~dfks~  130 (219)
                      +..||+.||||+|+.|+|.|..+|    -++.|-..++..
T Consensus         4 ~~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll~~~   43 (423)
T 4fie_A            4 KRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEES   43 (423)
T ss_dssp             ----------------------------------------
T ss_pred             CCCcccCCCCCCceeecCccCCCCCcccCCHHHHHHHHHh
Confidence            347899999999999999997665    388999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1ej5a_	107	Wiscott-Aldrich syndrome protein, WASP, C-terminal	97.47

>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
superfamily: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
family: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
domain: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=1.5e-05  Score=60.38  Aligned_cols=29  Identities=41%  Similarity=0.774  Sum_probs=25.2

Q ss_pred             CccceeeeeccCCCCC-----CCchhHhhhhcCC
Q 027719          103 TDVKHVAHIGWDGQSG-----SAPSWMNEFKAAP  131 (219)
Q Consensus       103 TDVKHVAHIGWDg~s~-----n~PsWm~dfks~~  131 (219)
                      |+++||+|+|||..++     -+|.|...|+.++
T Consensus         1 snF~Hv~HVG~D~~tGf~~~glp~eW~~lL~~sG   34 (107)
T d1ej5a_           1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAG   34 (107)
T ss_dssp             CCCCCCCCCCCBTTTBCCTTTCCHHHHHHHHHTT
T ss_pred             CCCeeeeeeeecCCCCccccCCCHHHHHHHHHcC
Confidence            7899999999999876     2999999998754