Citrus Sinensis ID: 027739

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDYPTKMTE
ccccccccccccccEEEEcccccccccccccHHHHHHHHccccEEEccccccccccccHHHHHHHccccccccHHHHHHHHHHHcEEEEEcccccccccccHHHHHccccccHHHcccccccccccccEEEEEEccccHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEEccEEEEEEEccccccccccccccccHHHHHHHHHcccccccc
cHHHccccccccccEEccEcccccccEccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHcEcccccHHHHHHHHHHHcEEEEEHHHHcHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEEEccccEEEEccccEEEEEcccEEEEEEEccHHHcccccccHHHHHHHHHHHHHcccccccc
MIKYATKveglgdavdivgtggdgantvnISTGASILAAACGAKvakqgsrssssacgsaDVLEALGVvidldpegvrrcvdeagigfmmstkyhpamkfvrpvrkklkVKTVFNIlgpmlnpacvpFAVVGVYNENLVLKMANALQRFGLKRALVVHsegldemsplgpgliLDVTQEKierfsfdpckdlvTDLFYFLFINSFLIVSildyptkmte
mikyatkveglgdaVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGvvidldpegVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEgldemsplgPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDYPTKMTE
MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQgsrssssacgsaDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDYPTKMTE
*****TKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKV************GSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDY******
******KVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDYPT****
MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAA*****************GSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDYPTKMTE
*****TKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDYP*****
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MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDLFYFLFINSFLIVSILDYPTKMTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query219 2.2.26 [Sep-21-2011]
Q02166444 Anthranilate phosphoribos yes no 0.858 0.423 0.829 2e-86
Q822W6343 Anthranilate phosphoribos yes no 0.849 0.542 0.524 1e-47
B9LEV9339 Anthranilate phosphoribos yes no 0.835 0.539 0.538 2e-47
A9WCH7339 Anthranilate phosphoribos yes no 0.835 0.539 0.538 2e-47
B8G5C5340 Anthranilate phosphoribos yes no 0.803 0.517 0.548 2e-47
Q254S7343 Anthranilate phosphoribos yes no 0.849 0.542 0.502 9e-47
B9M5M2350 Anthranilate phosphoribos yes no 0.794 0.497 0.508 1e-45
Q123F3347 Anthranilate phosphoribos yes no 0.853 0.538 0.489 3e-45
B3E5V8349 Anthranilate phosphoribos yes no 0.794 0.498 0.514 4e-45
A1W2Z7344 Anthranilate phosphoribos yes no 0.840 0.534 0.513 7e-45
>sp|Q02166|TRPD_ARATH Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  318 bits (815), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/188 (82%), Positives = 172/188 (91%)

Query: 1   MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSA 60
           M+K+A KVEGL DAVDIVGTGGDGANTVNISTG+SILAAACGAKVAKQG+RSSSSACGSA
Sbjct: 166 MMKHARKVEGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSA 225

Query: 61  DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPM 120
           DVLEALGVV+DL PEG++RCV+E GIGFMMS  YHPAMK V PVRKKLK+KTVFNILGPM
Sbjct: 226 DVLEALGVVLDLGPEGIKRCVEEGGIGFMMSPMYHPAMKIVGPVRKKLKIKTVFNILGPM 285

Query: 121 LNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEK 180
           LNPA V +AVVGVY+++LV+KMA ALQRFG+KRALVVHS GLDEMSPLG GL+ DVT EK
Sbjct: 286 LNPARVSYAVVGVYHKDLVVKMAKALQRFGMKRALVVHSCGLDEMSPLGGGLVYDVTPEK 345

Query: 181 IERFSFDP 188
           IE FSFDP
Sbjct: 346 IEEFSFDP 353

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 8
>sp|Q822W6|TRPD_CHLCV Anthranilate phosphoribosyltransferase OS=Chlamydophila caviae (strain GPIC) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|B9LEV9|TRPD_CHLSY Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|A9WCH7|TRPD_CHLAA Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|B8G5C5|TRPD_CHLAD Anthranilate phosphoribosyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|Q254S7|TRPD_CHLFF Anthranilate phosphoribosyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|B9M5M2|TRPD_GEOSF Anthranilate phosphoribosyltransferase OS=Geobacter sp. (strain FRC-32) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|Q123F3|TRPD_POLSJ Anthranilate phosphoribosyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|B3E5V8|TRPD_GEOLS Anthranilate phosphoribosyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=trpD PE=3 SV=1 Back     alignment and function description
>sp|A1W2Z7|TRPD_ACISJ Anthranilate phosphoribosyltransferase OS=Acidovorax sp. (strain JS42) GN=trpD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
255540627 425 anthranilate phosphoribosyltransferase, 0.858 0.442 0.882 3e-90
224119386 334 predicted protein [Populus trichocarpa] 0.858 0.562 0.851 9e-89
225456993 394 PREDICTED: anthranilate phosphoribosyltr 0.858 0.477 0.861 4e-88
325516268 365 anthranilate phosphoribosyltransferase [ 0.858 0.515 0.851 9e-88
449469549 412 PREDICTED: anthranilate phosphoribosyltr 0.858 0.456 0.856 1e-86
297807819 444 hypothetical protein ARALYDRAFT_909800 [ 0.858 0.423 0.835 2e-85
15238711 444 anthranilate phosphoribosyltransferase [ 0.858 0.423 0.829 9e-85
1389768 441 phosphoribosylanthranilate transferase [ 0.858 0.426 0.824 4e-84
356508683 399 PREDICTED: anthranilate phosphoribosyltr 0.867 0.476 0.831 4e-81
388503966 402 unknown [Lotus japonicus] 0.858 0.467 0.845 9e-80
>gi|255540627|ref|XP_002511378.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis] gi|223550493|gb|EEF51980.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 166/188 (88%), Positives = 175/188 (93%)

Query: 1   MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSA 60
           MIK+A KVEGL DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQG+RSSSSACGSA
Sbjct: 145 MIKHARKVEGLVDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGNRSSSSACGSA 204

Query: 61  DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPM 120
           DVLEALGVVIDLDPEGV RCV+EAGIGFMMS KYHPAMK V  VRKKLKVKTVFNILGPM
Sbjct: 205 DVLEALGVVIDLDPEGVSRCVNEAGIGFMMSPKYHPAMKIVSAVRKKLKVKTVFNILGPM 264

Query: 121 LNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEK 180
           LNPA VPF VVGVY E+LV KMA ALQRFG+KRALVVHSEGLDEMSPLGPG++LD+T EK
Sbjct: 265 LNPARVPFGVVGVYKEDLVYKMAKALQRFGMKRALVVHSEGLDEMSPLGPGIVLDITPEK 324

Query: 181 IERFSFDP 188
           IE+FSFDP
Sbjct: 325 IEKFSFDP 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224119386|ref|XP_002318059.1| predicted protein [Populus trichocarpa] gi|222858732|gb|EEE96279.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225456993|ref|XP_002282228.1| PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Vitis vinifera] gi|297733759|emb|CBI15006.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|325516268|gb|ADZ24712.1| anthranilate phosphoribosyltransferase [Solanum pennellii] Back     alignment and taxonomy information
>gi|449469549|ref|XP_004152482.1| PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297807819|ref|XP_002871793.1| hypothetical protein ARALYDRAFT_909800 [Arabidopsis lyrata subsp. lyrata] gi|297317630|gb|EFH48052.1| hypothetical protein ARALYDRAFT_909800 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238711|ref|NP_197300.1| anthranilate phosphoribosyltransferase [Arabidopsis thaliana] gi|401213|sp|Q02166.1|TRPD_ARATH RecName: Full=Anthranilate phosphoribosyltransferase, chloroplastic; Flags: Precursor gi|166792|gb|AAA32835.1| phosphoribosylanthranilate transferase [Arabidopsis thaliana] gi|9757891|dbj|BAB08398.1| anthranilate phosphoribosyltransferase, chloroplast precursor [Arabidopsis thaliana] gi|15450852|gb|AAK96697.1| anthranilate phosphoribosyltransferase, chloroplast precursor [Arabidopsis thaliana] gi|20259900|gb|AAM13297.1| anthranilate phosphoribosyltransferase, chloroplast precursor [Arabidopsis thaliana] gi|332005110|gb|AED92493.1| anthranilate phosphoribosyltransferase [Arabidopsis thaliana] gi|445600|prf||1909347A phosphoribosylanthranilate transferase Back     alignment and taxonomy information
>gi|1389768|gb|AAB02913.1| phosphoribosylanthranilate transferase [Arabidopsis thaliana] gi|28394222|gb|AAO42464.1| phosphorybosyl anthranilate transferase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356508683|ref|XP_003523084.1| PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|388503966|gb|AFK40049.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
TAIR|locus:2161528444 TRP1 "tryptophan biosynthesis 0.858 0.423 0.771 2.5e-72
TIGR_CMR|CHY_1585340 CHY_1585 "anthranilate phospho 0.821 0.529 0.472 9.9e-39
UNIPROTKB|P00904531 trpD "anthranilate synthase co 0.771 0.318 0.431 6.3e-37
TIGR_CMR|DET_1483341 DET_1483 "anthranilate phospho 0.821 0.527 0.441 2.1e-36
TIGR_CMR|CPS_3524365 CPS_3524 "anthranilate phospho 0.767 0.460 0.455 5.7e-36
UNIPROTKB|Q9KST4332 trpD "Anthranilate phosphoribo 0.803 0.530 0.397 3.1e-35
TIGR_CMR|VC_1172332 VC_1172 "anthranilate phosphor 0.803 0.530 0.397 3.1e-35
TIGR_CMR|SO_3021347 SO_3021 "anthranilate phosphor 0.794 0.501 0.408 2e-33
TIGR_CMR|GSU_2381350 GSU_2381 "anthranilate phospho 0.799 0.5 0.420 2.5e-33
UNIPROTKB|P66992370 trpD "Anthranilate phosphoribo 0.789 0.467 0.424 6.9e-31
TAIR|locus:2161528 TRP1 "tryptophan biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 145/188 (77%), Positives = 160/188 (85%)

Query:     1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXX 60
             M+K+A KVEGL DAVDIVGTGGDGANTVNISTG+SILAAACGAKVAKQ            
Sbjct:   166 MMKHARKVEGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSA 225

Query:    61 DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPM 120
             DVLEALGVV+DL PEG++RCV+E GIGFMMS  YHPAMK V PVRKKLK+KTVFNILGPM
Sbjct:   226 DVLEALGVVLDLGPEGIKRCVEEGGIGFMMSPMYHPAMKIVGPVRKKLKIKTVFNILGPM 285

Query:   121 LNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEK 180
             LNPA V +AVVGVY+++LV+KMA ALQRFG+KRALVVHS GLDEMSPLG GL+ DVT EK
Sbjct:   286 LNPARVSYAVVGVYHKDLVVKMAKALQRFGMKRALVVHSCGLDEMSPLGGGLVYDVTPEK 345

Query:   181 IERFSFDP 188
             IE FSFDP
Sbjct:   346 IEEFSFDP 353
GO:0000162 "tryptophan biosynthetic process" evidence=IEA;ISS;IMP
GO:0004048 "anthranilate phosphoribosyltransferase activity" evidence=IEA;ISS;TAS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0009536 "plastid" evidence=IDA
TIGR_CMR|CHY_1585 CHY_1585 "anthranilate phosphoribosyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P00904 trpD "anthranilate synthase component II" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1483 DET_1483 "anthranilate phosphoribosyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3524 CPS_3524 "anthranilate phosphoribosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KST4 trpD "Anthranilate phosphoribosyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1172 VC_1172 "anthranilate phosphoribosyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3021 SO_3021 "anthranilate phosphoribosyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2381 GSU_2381 "anthranilate phosphoribosyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P66992 trpD "Anthranilate phosphoribosyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q02166TRPD_ARATH2, ., 4, ., 2, ., 1, 80.82970.85840.4234yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.766
4th Layer2.4.2.180.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XII.1858.1
anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa)
(Populus trichocarpa)
Predicted Functional Partners:
ASB2
anthranilate synthase, beta subunit, ASB2 (EC-4.1.3.27) (240 aa)
•••• •• 0.999
ASB1
anthranilate synthase, beta subunit, ASB1 (EC-4.1.3.27) (276 aa)
•••  •• 0.998
ASA1
anthranilate synthase, alpha subunit 1 (EC-4.1.3.27) (532 aa)
• •• •• 0.998
ASA2
anthranilate synthase, alpha subunit 2 (EC-4.1.3.27) (530 aa)
• •• •• 0.998
eugene3.00080632
phosphoribosylanthranilate isomerase (EC-5.3.1.24) (254 aa)
• •• •• 0.997
fgenesh4_pm.C_scaffold_1312000001
annotation not avaliable (195 aa)
•••• •• 0.997
gw1.10136.5.1
annotation not avaliable (270 aa)
• •• •• 0.987
estExt_fgenesh4_pm.C_LG_XIV0483
indole-3-glycerol-phosphate synthase (EC-4.1.1.48) (259 aa)
• •• •• 0.986
estExt_Genewise1_v1.C_LG_XII0225
phosphoribosylanthranilate isomerase (EC-5.3.1.24) (206 aa)
• •• •• 0.985
fgenesh4_pg.C_scaffold_1312000004
Predicted protein (245 aa)
• •• •• 0.985

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
PLN02641343 PLN02641, PLN02641, anthranilate phosphoribosyltra 1e-133
PRK00188339 PRK00188, trpD, anthranilate phosphoribosyltransfe 1e-102
TIGR01245330 TIGR01245, trpD, anthranilate phosphoribosyltransf 5e-96
pfam00591254 pfam00591, Glycos_transf_3, Glycosyl transferase f 9e-84
COG0547338 COG0547, TrpD, Anthranilate phosphoribosyltransfer 6e-78
PRK14607534 PRK14607, PRK14607, bifunctional glutamine amidotr 1e-69
PRK09522531 PRK09522, PRK09522, bifunctional glutamine amidotr 2e-54
COG0213 435 COG0213, DeoA, Thymidine phosphorylase [Nucleotide 4e-06
PRK04350 490 PRK04350, PRK04350, thymidine phosphorylase; Provi 3e-04
PRK09071323 PRK09071, PRK09071, hypothetical protein; Validate 3e-04
TIGR03327 500 TIGR03327, AMP_phos, AMP phosphorylase 0.003
TIGR02645 493 TIGR02645, ARCH_P_rylase, putative thymidine phosp 0.003
>gnl|CDD|215345 PLN02641, PLN02641, anthranilate phosphoribosyltransferase Back     alignment and domain information 
 Score =  376 bits (968), Expect = e-133
 Identities = 161/188 (85%), Positives = 172/188 (91%)

Query: 1   MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSA 60
           MIK A KV+GL DAVDIVGTGGDGANTVNISTG+SILAAACGAKVAKQG+RSSSSACGSA
Sbjct: 62  MIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSA 121

Query: 61  DVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPM 120
           DVLEALGV IDL PEGV+RCV+E GIGFMM+ KYHPAMK V PVRKKLKVKTVFNILGPM
Sbjct: 122 DVLEALGVAIDLGPEGVKRCVEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPM 181

Query: 121 LNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEK 180
           LNPA VP AVVGVY+E+LV KMA ALQRFG+KRALVVHSEGLDEMSPLGPG +L+VT EK
Sbjct: 182 LNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSEGLDEMSPLGPGDVLEVTPEK 241

Query: 181 IERFSFDP 188
           IE FSFDP
Sbjct: 242 IEEFSFDP 249

Length = 343
>gnl|CDD|234682 PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233329 TIGR01245, trpD, anthranilate phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|216013 pfam00591, Glycos_transf_3, Glycosyl transferase family, a/b domain Back     alignment and domain information
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|223291 COG0213, DeoA, Thymidine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235289 PRK04350, PRK04350, thymidine phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|181637 PRK09071, PRK09071, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|132370 TIGR03327, AMP_phos, AMP phosphorylase Back     alignment and domain information
>gnl|CDD|233962 TIGR02645, ARCH_P_rylase, putative thymidine phosphorylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 219
COG0547338 TrpD Anthranilate phosphoribosyltransferase [Amino 100.0
PLN02641343 anthranilate phosphoribosyltransferase 100.0
PRK07394342 hypothetical protein; Provisional 100.0
PRK08136317 glycosyl transferase family protein; Provisional 100.0
PF00591252 Glycos_transf_3: Glycosyl transferase family, a/b 100.0
PRK09522531 bifunctional glutamine amidotransferase/anthranila 100.0
TIGR01245330 trpD anthranilate phosphoribosyltransferase. In ma 100.0
PRK00188339 trpD anthranilate phosphoribosyltransferase; Provi 100.0
PRK14607534 bifunctional glutamine amidotransferase/anthranila 100.0
PRK09071323 hypothetical protein; Validated 100.0
KOG1438373 consensus Anthranilate phosphoribosyltransferase [ 100.0
PRK06078 434 pyrimidine-nucleoside phosphorylase; Reviewed 100.0
TIGR02644 405 Y_phosphoryl pyrimidine-nucleoside phosphorylase. 99.96
PRK04350 490 thymidine phosphorylase; Provisional 99.96
PRK05820 440 deoA thymidine phosphorylase; Reviewed 99.9
TIGR02645 493 ARCH_P_rylase putative thymidine phosphorylase. Me 99.89
TIGR02643 437 T_phosphoryl thymidine phosphorylase. Thymidine ph 99.88
TIGR03327 500 AMP_phos AMP phosphorylase. This enzyme family is 99.85
COG0213 435 DeoA Thymidine phosphorylase [Nucleotide transport 97.55
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-65  Score=460.42  Aligned_cols=195  Identities=53%  Similarity=0.856  Sum_probs=186.4

Q ss_pred             CccccccccCCC-CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 027739            1 MIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR   79 (219)
Q Consensus         1 ~~~~~~~~~~~~-~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~   79 (219)
                      |++++.+++.+. ..+|+|||||||++||||||++|||+|++|+||+|||||++|||+||+|+||+|||+++.+++++++
T Consensus        63 m~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~  142 (338)
T COG0547          63 MREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAAR  142 (338)
T ss_pred             HHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHH
Confidence            677777777654 3389999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEe
Q 027739           80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS  159 (219)
Q Consensus        80 ~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~G  159 (219)
                      +|++.||+|||+|.|||+|+++.++|++||+||+||++|||+||+++++||+|||||+|.++++++++.+|.+|++||||
T Consensus       143 ~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G  222 (338)
T COG0547         143 ALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHG  222 (338)
T ss_pred             HHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -CCccccCCCCceEEEEEeCCcEEEEEeccCcchhhhH
Q 027739          160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPCKDLVTDL  196 (219)
Q Consensus       160 -eG~dEls~~~~t~i~~v~~g~i~~~~l~P~d~~~~~~  196 (219)
                       ||+||++|+++|.|+++++|++++|+++|+ +||.+.
T Consensus       223 ~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe-~~Gl~~  259 (338)
T COG0547         223 LEGLDEVTPTGTTLVAELKDGEIREYTLTPE-DFGLER  259 (338)
T ss_pred             CCCcccccCCCCceEEEEcCCceEEEEeCHH-hcCCCC
Confidence             899999999999999999999999999996 676554

>PLN02641 anthranilate phosphoribosyltransferase Back     alignment and domain information
>PRK07394 hypothetical protein; Provisional Back     alignment and domain information
>PRK08136 glycosyl transferase family protein; Provisional Back     alignment and domain information
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2 Back     alignment and domain information
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR01245 trpD anthranilate phosphoribosyltransferase Back     alignment and domain information
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09071 hypothetical protein; Validated Back     alignment and domain information
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase Back     alignment and domain information
>PRK04350 thymidine phosphorylase; Provisional Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase Back     alignment and domain information
>TIGR02643 T_phosphoryl thymidine phosphorylase Back     alignment and domain information
>TIGR03327 AMP_phos AMP phosphorylase Back     alignment and domain information
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1kgz_A345 Crystal Structure Analysis Of The Anthranilate Phos 8e-38
4hkm_A346 Crystal Structure Of An Anthranilate Phosphoribosyl 1e-29
1vqu_A374 Crystal Structure Of Anthranilate Phosphoribosyltra 1e-29
1v8g_A329 Crystal Structure Of Anthranilate Phosphoribosyltra 4e-29
2bpq_A373 Anthranilate Phosphoribosyltransferase (Trpd) From 2e-27
3qr9_A377 Anthranilate Phosphoribosyltransferase (trpd) From 2e-27
1o17_A345 Anthranilate Phosphoribosyl-Transferase (Trpd) Leng 5e-27
1zvw_A378 The Crystal Structure Of Trpd (Rv2192c) From Mycoba 7e-27
3gbr_A345 Anthranilate Phosphoribosyl-Transferase (Trpd) Doub 3e-21
>pdb|1KGZ|A Chain A, Crystal Structure Analysis Of The Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (current Name, Pectobacterium Carotovorum) Length = 345 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 112/177 (63%), Gaps = 1/177 (0%)
Query: 13  DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXX-DVLEALGVVID 71
           D  DIVGTGGDG N++NIST ++ +AA+CGAKVAK              D+L+A G+ +D
Sbjct: 85  DFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLD 144
Query: 72  LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVV 131
           +  E  R+ +D+  + F+ + +YH   +   PVR++LK +T+FN+LGP++NPA  P A++
Sbjct: 145 MSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALI 204
Query: 132 GVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDP 188
           GVY+  LVL +A AL+  G K A VVH  G+DE++   P  + ++   +IE +   P
Sbjct: 205 GVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSP 261
>pdb|4HKM|A Chain A, Crystal Structure Of An Anthranilate Phosphoribosyltransferase (Target Id Nysgrc-016600) From Xanthomonas Campestris Length = 346 Back     alignment and structure
>pdb|1VQU|A Chain A, Crystal Structure Of Anthranilate Phosphoribosyltransferase 2 (17130499) From Nostoc Sp. At 1.85 A Resolution Length = 374 Back     alignment and structure
>pdb|1V8G|A Chain A, Crystal Structure Of Anthranilate Phosphoribosyltransferase (Trpd) From Thermus Thermophilus Hb8 Length = 329 Back     alignment and structure
>pdb|2BPQ|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From Mycobacterium Tuberculosis (Apo Structure) Length = 373 Back     alignment and structure
>pdb|3QR9|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From Mycobacterium Tuberculosis (apo Structure) Length = 377 Back     alignment and structure
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Length = 345 Back     alignment and structure
>pdb|1ZVW|A Chain A, The Crystal Structure Of Trpd (Rv2192c) From Mycobacterium Tuberculosis In Complex With Prpp And Magnesium Length = 378 Back     alignment and structure
>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double Mutant D83g F149s From S. Solfataricus Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1khd_A345 Anthranilate phosphoribosyltransferase; type 3 PRT 1e-100
3qr9_A377 Anthranilate phosphoribosyltransferase; anthranili 6e-99
1o17_A345 Anthranilate PRT, anthranilate phosphoribosyltrans 1e-98
1vqu_A374 Anthranilate phosphoribosyltransferase 2; 17130499 5e-96
2elc_A329 Trp D, anthranilate phosphoribosyltransferase; str 2e-94
1uou_A 474 Thymidine phosphorylase; transferase, glycosyltran 4e-06
2dsj_A 423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 4e-06
1brw_A 433 PYNP, protein (pyrimidine nucleoside phosphorylase 5e-06
2tpt_A 440 Thymidine phosphorylase; transferase, salvage path 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3h5q_A 436 PYNP, pyrimidine-nucleoside phosphorylase; structu 1e-05
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Length = 345 Back     alignment and structure
 Score =  293 bits (753), Expect = e-100
 Identities = 79/190 (41%), Positives = 121/190 (63%), Gaps = 2/190 (1%)

Query: 1   MIKYATKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS-SSSACG 58
           ++  A        D  DIVGTGGDG N++NIST ++ +AA+CGAKVAK G+RS      G
Sbjct: 72  LLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAG 131

Query: 59  SADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILG 118
           S D+L+A G+ +D+  E  R+ +D+  + F+ + +YH   +   PVR++LK +T+FN+LG
Sbjct: 132 SCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLG 191

Query: 119 PMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQ 178
           P++NPA  P A++GVY+  LVL +A AL+  G K A VVH  G+DE++   P  + ++  
Sbjct: 192 PLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNN 251

Query: 179 EKIERFSFDP 188
            +IE +   P
Sbjct: 252 GEIESYQLSP 261
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, magnesium binding, phosphoribosyl pyrophosphate transferase; 1.87A {Mycobacterium tuberculosis} PDB: 1zvw_A* 2bpq_A Length = 377 Back     alignment and structure
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A* Length = 345 Back     alignment and structure
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP} Length = 374 Back     alignment and structure
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A Length = 329 Back     alignment and structure
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A Length = 474 Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Length = 423 Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Length = 433 Back     alignment and structure
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Length = 440 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} Length = 436 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
1khd_A345 Anthranilate phosphoribosyltransferase; type 3 PRT 100.0
1vqu_A374 Anthranilate phosphoribosyltransferase 2; 17130499 100.0
1o17_A345 Anthranilate PRT, anthranilate phosphoribosyltrans 100.0
2elc_A329 Trp D, anthranilate phosphoribosyltransferase; str 100.0
4hkm_A346 Anthranilate phosphoribosyltransferase; structural 100.0
3r88_A377 Anthranilate phosphoribosyltransferase; anthranili 100.0
2dsj_A 423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 100.0
3h5q_A 436 PYNP, pyrimidine-nucleoside phosphorylase; structu 100.0
1brw_A 433 PYNP, protein (pyrimidine nucleoside phosphorylase 100.0
1uou_A 474 Thymidine phosphorylase; transferase, glycosyltran 100.0
2tpt_A 440 Thymidine phosphorylase; transferase, salvage path 100.0
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Back     alignment and structure
Probab=100.00  E-value=1.5e-59  Score=427.10  Aligned_cols=190  Identities=42%  Similarity=0.751  Sum_probs=175.6

Q ss_pred             CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCC-cccHHHHHHHcCCCCCCCHHHHH
Q 027739            1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS-ACGSADVLEALGVVIDLDPEGVR   78 (219)
Q Consensus         1 ~~~~~~~~~~~-~~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ss-k~Gs~dvLeaLGi~~~~~~~~a~   78 (219)
                      |++++.+++.+ ++.+|+|||||||.+||||||++|+++|++|+||+|||||+++| |+||+|+||+||++++.++++++
T Consensus        72 m~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VakHGnr~~ss~~~GsaDvLeaLGv~~~~~~~~~~  151 (345)
T 1khd_A           72 LLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLDMSAEDSR  151 (345)
T ss_dssp             HHHTSCCCCCCSSCCEEEEECCCCSSCBCCCHHHHHHHHHHHTCCEEEEECC---------CHHHHHTTCCTTCCHHHHH
T ss_pred             HHHhCCcCCCCCCCeeeecCCCCCCCCccchHHHHHHHHHhCCCcEEEeCCCCCCCCcccHHHHHHhCCCCCCCCHHHHH
Confidence            57788877653 35899999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEE
Q 027739           79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH  158 (219)
Q Consensus        79 ~~L~~~gi~fl~a~~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~  158 (219)
                      ++|++.||+|+++|.|||+|+++.++|++||+||+||++|||+||++++++|+|||||+|.+.++++++.+|.++++|||
T Consensus       152 ~~l~~~gi~fl~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~  231 (345)
T 1khd_A          152 QALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVH  231 (345)
T ss_dssp             HHHHHHSEEEEEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHCCEEEEehhhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCccccCCCCceEEEEEeCCcEEEEEeccCc
Q 027739          159 SEGLDEMSPLGPGLILDVTQEKIERFSFDPCK  190 (219)
Q Consensus       159 GeG~dEls~~~~t~i~~v~~g~i~~~~l~P~d  190 (219)
                      |||+||+|++++|+++++++|++++|+|+|+|
T Consensus       232 GdG~dEis~~~~t~v~~~~~g~i~~~~i~p~~  263 (345)
T 1khd_A          232 GGGMDEVAIHTPTQVAELNNGEIESYQLSPQD  263 (345)
T ss_dssp             ETTBSSCCSSSCEEEEEEETTEEEEEEECGGG
T ss_pred             CCCcceecCCCceEEEEEeCCEEEEEEECHHH
Confidence            99999999999999999999999999999974
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP} Back     alignment and structure
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A* Back     alignment and structure
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A Back     alignment and structure
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV} Back     alignment and structure
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Back     alignment and structure
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A Back     alignment and structure
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 219
d1o17a2273 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltra 4e-53
d1khda2264 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltra 6e-40
d2elca2264 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltra 3e-37
d1uoua2273 c.27.1.1 (A:101-373) Thymidine phosphorylase {Huma 1e-35
d1brwa2260 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphor 4e-34
d2tpta2265 c.27.1.1 (A:71-335) Thymidine phosphorylase {Esche 4e-33
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 273 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  169 bits (430), Expect = 4e-53
 Identities = 69/178 (38%), Positives = 109/178 (61%), Gaps = 2/178 (1%)

Query: 13  DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL 72
           +A+D  GTGGDG  TVN+ST ++IL +     VAK G+R+ S   GSADVLEALG  I +
Sbjct: 3   NAIDTAGTGGDGLGTVNVSTASAILLSLVN-PVAKHGNRAVSGKSGSADVLEALGYNIIV 61

Query: 73  DPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132
            PE  +  V++    F+ +  YHPAMK V  VRK L ++T+FNILGP+ NPA   + ++G
Sbjct: 62  PPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMG 121

Query: 133 VYNENLVLKMANALQRFGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPC 189
           V++++ +  ++ +       + ++V+ E  +DE+SP+G   +  V++  IE    +  
Sbjct: 122 VFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVT 179
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Length = 264 Back     information, alignment and structure
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Length = 264 Back     information, alignment and structure
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 260 Back     information, alignment and structure
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
d1o17a2273 Anthranilate phosphoribosyltransferase (TrpD) {Arc 100.0
d1khda2264 Anthranilate phosphoribosyltransferase (TrpD) {Pec 100.0
d2elca2264 Anthranilate phosphoribosyltransferase (TrpD) {The 100.0
d1uoua2273 Thymidine phosphorylase {Human (Homo sapiens) [Tax 100.0
d1brwa2260 Pyrimidine nucleoside phosphorylase {Bacillus stea 100.0
d2tpta2265 Thymidine phosphorylase {Escherichia coli [TaxId: 100.0
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1e-65  Score=452.46  Aligned_cols=177  Identities=39%  Similarity=0.664  Sum_probs=170.6

Q ss_pred             CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecc
Q 027739           13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMST   92 (219)
Q Consensus        13 ~~~Di~GtggDg~~t~NiSt~aA~vlAa~Gv~V~kHG~~~~ssk~Gs~dvLeaLGi~~~~~~~~a~~~L~~~gi~fl~a~   92 (219)
                      +.+|+|||||||++|||+||++||++|++| ||+|||||++|||+||+|+||+|||+++.++++++++|++.||+|+|+|
T Consensus         3 ~~~D~~GTGgDg~~t~NiSt~~a~v~a~~g-~VaKHGnr~~ssk~GSaDvLe~LGi~~~~~~~~~~~~l~~~g~~FlfAp   81 (273)
T d1o17a2           3 NAIDTAGTGGDGLGTVNVSTASAILLSLVN-PVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQ   81 (273)
T ss_dssp             TCEECCC----CCCBCCHHHHHHHHHTTTS-CEEEEECCCSSSSCSHHHHHHHHTBCCCCCHHHHHHHHHHHSEEEEEHH
T ss_pred             CccccCcCCCCCCCCcchhHHHHHHHhcCC-cEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHHHHHcCceEeecc
Confidence            579999999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             cccHHhhhhHHHHhhcCCCchhHhHhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEEe-CCccccCCCCce
Q 027739           93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPG  171 (219)
Q Consensus        93 ~~~P~l~~l~~lR~~Lg~RT~fNtl~pLlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lG~~~alvv~G-eG~dEls~~~~t  171 (219)
                      .|||+|+++.++|++||+||+||++|||+||+++++||+|||||+|.++|+++++++|.++++|||| ||+||+|++++|
T Consensus        82 ~~hPamk~v~~vRk~Lg~rTiFN~lgPL~NPa~~~~qliGv~~~~~~~~~a~~l~~lg~~~a~vv~G~dG~DEis~~g~t  161 (273)
T d1o17a2          82 YYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNT  161 (273)
T ss_dssp             HHCGGGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTBSSCCSSSEE
T ss_pred             ccChHHHHHHHHHHHcCCCchhhhhhhccCCcCcceeeeccccHHHHHHHHHHHHhhcccceEEecCCccccchhccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             EEEEEeCCcEEEEEeccCc
Q 027739          172 LILDVTQEKIERFSFDPCK  190 (219)
Q Consensus       172 ~i~~v~~g~i~~~~l~P~d  190 (219)
                      ++|++++|++++++|+|+|
T Consensus       162 ~v~~~~~g~i~~~~i~P~d  180 (273)
T d1o17a2         162 FMKIVSKRGIEEVKLNVTD  180 (273)
T ss_dssp             EEEEEETTEEEEEEEEGGG
T ss_pred             eeeecccccceeeeeehhh
Confidence            9999999999999999985
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure