Citrus Sinensis ID: 027773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV
Secondary Structure (PSIPRED)
cEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mvmtlikgpilelfwtkgaenhghgssgttthnsIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGivmkdrgpvfvaAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVwgkskdhkspspstdehlppaeqtnntgsngkenfghevtkidv
Flexible Loop (DISEMBL)
MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSpspstdehlppaeqtnntgsngkenfghevtkidv
Low Complexity Region (SEG)
MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLgriigaiiiiggLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV
Disordered region (IsUnstruct)
***TLIKGPILELFWTKGAE**********THNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG******************************************
Disordered Region (DISOPRED)
MVMTLIKGPILELF********************IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG***************************************I**
Disordered Region (DISEMBL)
MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK*****************AEQTNNTGSNGKENFGHEVTKIDV
Disordered Region (DISPRO)
MVMTLIKGPILELFWT***************HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS**********************************V*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9ZUS1	380	WAT1-related protein At2g	yes	no	0.972	0.560	0.613	6e-77
F4IQX1	336	WAT1-related protein At2g	no	no	0.922	0.601	0.609	3e-70
O80638	374	WAT1-related protein At2g	no	no	0.885	0.518	0.579	5e-61
Q9SUF1	384	WAT1-related protein At4g	no	no	0.831	0.473	0.497	2e-49
Q501F8	373	WAT1-related protein At4g	no	no	0.821	0.482	0.537	2e-49
Q9FNA5	377	WAT1-related protein At5g	no	no	0.826	0.480	0.497	2e-47
Q9LPF1	370	WAT1-related protein At1g	no	no	0.954	0.564	0.470	3e-47
F4HZQ7	389	WAT1-related protein At1g	no	no	0.785	0.442	0.491	5e-43
Q9FL41	402	WAT1-related protein At5g	no	no	0.945	0.514	0.421	7e-43
F4IJ08	394	WAT1-related protein At2g	no	no	0.904	0.502	0.364	2e-35

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  286 bits (733), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 168/220 (76%), Gaps = 7/220 (3%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA+++T GCFS++ F+ILQAITL+
Sbjct: 153 MIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVLVTIGCFSYACFMILQAITLR 210

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WDTKL+ + YSGI+CS L YY+
Sbjct: 211 TYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYV 270

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
            G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYLGR++GA++I  GLYLV+WGK K
Sbjct: 271 GGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGK 330

Query: 181 DHKSPS--PSTDEHLPPAEQTNNTGSNGKENFGHEVTKID 218
           D+K  S     DE   P  + +    NGK+N  HEV  I 
Sbjct: 331 DYKYNSTLQLDDESAQPKLELSG---NGKDNVDHEVITIS 367

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQX1|WTR12_ARATH WAT1-related protein At2g37450 OS=Arabidopsis thaliana GN=At2g37450 PE=2 SV=1

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 156/210 (74%), Gaps = 8/210 (3%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           MVMTL+KGP L+LFWTKG       + GT  H+SIKGA+++T GCFS++ F+ILQAITLK
Sbjct: 126 MVMTLVKGPALDLFWTKGPS--AQNTVGTDIHSSIKGAVLVTIGCFSYACFMILQAITLK 183

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSL  WIC  GT+EG + AL+ME+G  S+WAI WDTKL+   YSGI+CS L YYI
Sbjct: 184 TYPAELSLATWICLIGTIEGVVVALVMEKGNPSVWAIGWDTKLLTITYSGIVCSALGYYI 243

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
            G+VMK RGPVFV AF PLCM++VAIMS+II  EQMYLGR +GA +I  GLYLV+WGK+K
Sbjct: 244 GGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIWGKAK 303

Query: 181 DHKSPS-PSTDEHLPPAEQTNNTGSNGKEN 209
           D++ PS P  D+ L  A     T S  KE 
Sbjct: 304 DYEYPSTPQIDDDLAQA-----TTSKQKEQ 328

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  234 bits (596), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 146/195 (74%), Gaps = 1/195 (0%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MT++KGP++ L W    + H   S+     +  KGA +I  GC  W+ FI LQAITLK
Sbjct: 146 MLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQAITLK 205

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
           +YP ELSLTA+ICF G++E T+ AL +ERG  S WAIH D+KL+A+VY G+ICSG+ YY+
Sbjct: 206 SYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLDSKLLAAVYGGVICSGIGYYV 265

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QG++MK RGPVFV AF+PL MVIVAI+ +IILAE M+LGRI+GAI+I+ GLY V+WGKSK
Sbjct: 266 QGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSK 325

Query: 181 DHKSPSPST-DEHLP 194
           D  S S S  D+ LP
Sbjct: 326 DEPSSSFSDMDKELP 340

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 134/185 (72%), Gaps = 3/185 (1%)

Query: 1   MVMTLIKGPILELFWTKGA--ENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAIT 58
           +VMTL KGP++ L W+     + +GH ++    +N + G L+I  GC +WS F +LQ+IT
Sbjct: 151 LVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLGCVAWSGFYVLQSIT 210

Query: 59  LKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 118
           +K YPA+LSL+A IC  G V+    AL++ER   S WA+ WD +L A +Y+GI+ SG+TY
Sbjct: 211 IKTYPADLSLSALICLAGAVQSFAVALVVER-HPSGWAVGWDARLFAPLYTGIVSSGITY 269

Query: 119 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178
           Y+QG+VMK RGPVFV AF+PLCM++VA++++ IL EQ++ G +IG  +I  GLY+VVWGK
Sbjct: 270 YVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAAGLYMVVWGK 329

Query: 179 SKDHK 183
            KD++
Sbjct: 330 GKDYE 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/186 (53%), Positives = 130/186 (69%), Gaps = 6/186 (3%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGT----TTHNSIKGALMITAGCFSWSFFIILQA 56
           MVMTL KGP +ELF T  +  HG GSSGT    T  N + G L +     +W+ F ILQ+
Sbjct: 149 MVMTLYKGPAIELFKTAHSSLHG-GSSGTSSETTDQNWVTGTLAVMGSITTWAGFFILQS 207

Query: 57  ITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 116
            TLK YPAELSL  WIC  GTV  T+A+LIM R   S W +  D+  +A+VYSG++CSG+
Sbjct: 208 FTLKKYPAELSLVMWICAMGTVLNTIASLIMVR-DVSAWKVGMDSGTLAAVYSGVVCSGM 266

Query: 117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176
            YYIQ IV+++RGPVF  +FSP+CM+I A +  ++LAE+++LG IIGAI I+ GLY VVW
Sbjct: 267 AYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVW 326

Query: 177 GKSKDH 182
           GK+KD 
Sbjct: 327 GKAKDE 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 129/185 (69%), Gaps = 4/185 (2%)

Query: 1   MVMTLIKGPILELFWT---KGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAI 57
           M+MT +KG ++EL WT   +G   H H        +  +G++M+ A CFSWS +IILQA 
Sbjct: 146 MLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIARGSIMLVASCFSWSCYIILQAK 205

Query: 58  TLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 117
            L  Y AELSLTA +C  G +E T+  LI ER   S+W I+ D  L+AS+Y G++ SGL 
Sbjct: 206 ILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSVWKINPDVTLLASIYGGLV-SGLA 264

Query: 118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177
           YY+ G   K+RGPVFV+AF+PL MV+VAI+ST +  E++Y+GR+IG+++I+ G+YLV+WG
Sbjct: 265 YYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWG 324

Query: 178 KSKDH 182
           KSKD 
Sbjct: 325 KSKDK 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  188 bits (477), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 138/217 (63%), Gaps = 8/217 (3%)

Query: 1   MVMTLIKGPILELFWTKGAEN--HGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAIT 58
           M+MTL KGP +E+   K A N  HG  SS  T  + + G + I     +W+ F ILQ+ T
Sbjct: 149 MIMTLYKGPAIEI--VKAAHNSFHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYT 206

Query: 59  LKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 118
           LK YPAELSL   IC  GT+   +A+LIM R   S W I  D+  +A+VYSG++CSG+ Y
Sbjct: 207 LKVYPAELSLVTLICGIGTILNAIASLIMVR-DPSAWKIGMDSGTLAAVYSGVVCSGIAY 265

Query: 119 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178
           YIQ IV+K RGPVF  +FSP+CM+I A +  ++LAE+++LG IIGA+ I+ GLY VVWGK
Sbjct: 266 YIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGK 325

Query: 179 SKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVT 215
           SKD  +P    DE +    Q     +  K+  GH+V+
Sbjct: 326 SKDEVNP---LDEKIVAKSQELPITNVVKQTNGHDVS 359

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 112/173 (64%), Gaps = 1/173 (0%)

Query: 35  IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASI 94
           I G LM+    F W+ F ILQ+ TLK YPAELSLT  IC  GT+EGT  +L+  R   S 
Sbjct: 192 IPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVR-DLSA 250

Query: 95  WAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAE 154
           W I +D+ L A+ YSG+ICSG+ YY+QG+VM++RGPVFVA F+PLC+VI A +  ++L+E
Sbjct: 251 WKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAALGVVVLSE 310

Query: 155 QMYLGRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGK 207
            ++LG +IG + II GLY VVWGK KD +      D    P +        GK
Sbjct: 311 SIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDDEDCKGLPIKSPVKPVDTGK 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 140/216 (64%), Gaps = 9/216 (4%)

Query: 1   MVMTLIKGPILELFWTK--GAENHGHGSSGTTTHNS-----IKGALMITAGCFSWSFFII 53
           M+MT+ KGPI+ELFWTK    ++  H ++ ++ ++S     +KG++++     +W+   +
Sbjct: 156 MLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLAWASLFV 215

Query: 54  LQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 112
           LQA  LK Y   +LSLT  ICF GT++      +ME    S W I WD  L+A+ YSGI+
Sbjct: 216 LQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNP-SAWRIGWDMNLLAAAYSGIV 274

Query: 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLY 172
            S ++YY+QGIVMK RGPVF  AFSPL MVIVA+M + +LAE+++LG +IGA++I+ GLY
Sbjct: 275 ASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLY 334

Query: 173 LVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKE 208
            V+WGK K+++       +    ++ T +  +NG +
Sbjct: 335 AVLWGKQKENQVTICELAKIDSNSKVTEDVEANGSK 370

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 125/206 (60%), Gaps = 8/206 (3%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           ++M   KGP +  F      +H   +S   T + +K A+ +     SW+ F +LQA TLK
Sbjct: 149 ILMIFYKGPFINFF-----RSHLTAASSPPTADYLKAAVFLLLASLSWASFFVLQAATLK 203

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            Y A LS++  +CF GT++    A +ME   +++  I +D  L+AS Y+GI+ S + YY+
Sbjct: 204 KYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSAL-NIGFDMNLLASAYAGIMSSSIAYYV 262

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QG++M+ +GPVFV AF+PL +VIV+IMS  +L + +YLG +IG ++++ G+Y V+WGK  
Sbjct: 263 QGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLGGVIGVVVLMVGVYAVLWGKHV 322

Query: 181 DHKSPSPSTDEHLPPAEQTNNTGSNG 206
           D        ++++   +    +G+NG
Sbjct: 323 DDDGEETRHEDNVVAVKCC--SGNNG 346

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
359481510	396	PREDICTED: auxin-induced protein 5NG4-li	1.0	0.553	0.666	4e-86
297741549	383	unnamed protein product [Vitis vinifera]	0.954	0.545	0.684	8e-85
255587617	220	conserved hypothetical protein [Ricinus	0.968	0.963	0.660	2e-83
224087387	348	predicted protein [Populus trichocarpa]	0.913	0.574	0.71	1e-80
15224291	380	nodulin MtN21 /EamA-like transporter-lik	0.972	0.560	0.613	3e-75
21553757	362	nodulin-like protein [Arabidopsis thalia	0.981	0.593	0.610	8e-75
356570708	383	PREDICTED: auxin-induced protein 5NG4-li	0.945	0.540	0.639	3e-73
388498302	379	unknown [Medicago truncatula]	0.968	0.559	0.627	3e-73
357510463	379	Auxin-induced protein 5NG4 [Medicago tru	0.968	0.559	0.623	1e-72
297827251	339	predicted protein [Arabidopsis lyrata su	0.958	0.619	0.602	1e-72

>gi|359481510|ref|XP_002274909.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 146/219 (66%), Positives = 178/219 (81%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MTL+KGP++EL WTKG  N G    GT  H+SIKG+LMITAGCFSW+ FIILQAITLK
Sbjct: 157 MLMTLVKGPVIELIWTKGRNNQGVKGGGTNIHDSIKGSLMITAGCFSWACFIILQAITLK 216

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSLTAWIC  GT +GT+ AL+MERGK S+W+IHWDTK +A++YSGI+CSGL YYI
Sbjct: 217 TYPAELSLTAWICLLGTAQGTIVALVMERGKTSVWSIHWDTKFLAALYSGIVCSGLAYYI 276

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QG+VMKDRGPVFV AF+PL M+IVA+MS+ ILAEQMYLGR+IGAI+I+ GLY VVWGKSK
Sbjct: 277 QGVVMKDRGPVFVTAFNPLSMIIVAVMSSFILAEQMYLGRVIGAIVIVAGLYFVVWGKSK 336

Query: 181 DHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV 219
           ++KS SPSTD  +   +Q  +  S+  EN   EV  ++V
Sbjct: 337 EYKSGSPSTDGQMVQDKQMTDASSDSNENSTPEVITLNV 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741549|emb|CBI32681.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 173/209 (82%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MTL+KGP++EL WTKG  N G    GT  H+SIKG+LMITAGCFSW+ FIILQAITLK
Sbjct: 163 MLMTLVKGPVIELIWTKGRNNQGVKGGGTNIHDSIKGSLMITAGCFSWACFIILQAITLK 222

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSLTAWIC  GT +GT+ AL+MERGK S+W+IHWDTK +A++YSGI+CSGL YYI
Sbjct: 223 TYPAELSLTAWICLLGTAQGTIVALVMERGKTSVWSIHWDTKFLAALYSGIVCSGLAYYI 282

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QG+VMKDRGPVFV AF+PL M+IVA+MS+ ILAEQMYLGR+IGAI+I+ GLY VVWGKSK
Sbjct: 283 QGVVMKDRGPVFVTAFNPLSMIIVAVMSSFILAEQMYLGRVIGAIVIVAGLYFVVWGKSK 342

Query: 181 DHKSPSPSTDEHLPPAEQTNNTGSNGKEN 209
           ++KS SPSTD  +   +Q  +  S+  EN
Sbjct: 343 EYKSGSPSTDGQMVQDKQMTDASSDSNEN 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587617|ref|XP_002534331.1| conserved hypothetical protein [Ricinus communis] gi|223525477|gb|EEF28049.1| conserved hypothetical protein [Ricinus communis]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 140/212 (66%), Positives = 174/212 (82%)

Query: 5   LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPA 64
           ++KG  + LF TKG  +H  G+S    H+SIKGALMIT GCFSW+ F+ILQAITLK YPA
Sbjct: 1   MVKGAPVNLFGTKGNSHHEQGTSAINLHDSIKGALMITVGCFSWACFMILQAITLKTYPA 60

Query: 65  ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIV 124
           ELSLTAWIC  GT+EG++ A++MERG  S+WA+HWDTKL+A+VYSG++CSG  YYIQG++
Sbjct: 61  ELSLTAWICLLGTIEGSIVAMVMERGNNSVWALHWDTKLIAAVYSGVVCSGFAYYIQGVI 120

Query: 125 MKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKS 184
           MKDRGPVFV AF PLCMVIVA+MS+IILAEQM+LGR+IGA II+GGLYLV+WGKSKDHKS
Sbjct: 121 MKDRGPVFVTAFGPLCMVIVAVMSSIILAEQMFLGRVIGAAIIVGGLYLVIWGKSKDHKS 180

Query: 185 PSPSTDEHLPPAEQTNNTGSNGKENFGHEVTK 216
           P P+ D+ + P +QT N  S+ KEN   E ++
Sbjct: 181 PPPTVDDQIIPTKQTTNERSHEKENSDQEASQ 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087387|ref|XP_002308146.1| predicted protein [Populus trichocarpa] gi|222854122|gb|EEE91669.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/200 (71%), Positives = 166/200 (83%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MTL+KGP++E F  KG   H +G+ G   H+SIKGALMIT GCFSW+ F+ILQAITLK
Sbjct: 147 MLMTLMKGPLIEFFRIKGNAYHENGTGGIDLHSSIKGALMITVGCFSWACFMILQAITLK 206

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
           +YPAELSLTAWIC  GT+EG + AL+ E GK S+WAI+WD KL+A+VYSGI CSGL YYI
Sbjct: 207 SYPAELSLTAWICLLGTIEGAVVALVAENGKPSVWAINWDMKLLAAVYSGIFCSGLAYYI 266

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QGIVMKDRGPVFV AFSPLCMVIVA+MS+II AEQMYLGRI+GAIII+ GLYLVVWGKSK
Sbjct: 267 QGIVMKDRGPVFVTAFSPLCMVIVAVMSSIIWAEQMYLGRILGAIIIVAGLYLVVWGKSK 326

Query: 181 DHKSPSPSTDEHLPPAEQTN 200
           D+K+ SP  DE   P +QT 
Sbjct: 327 DYKTSSPPADEQTIPVKQTT 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224291|ref|NP_181282.1| nodulin MtN21 /EamA-like transporter-like protein [Arabidopsis thaliana] gi|4056506|gb|AAC98072.1| nodulin-like protein [Arabidopsis thaliana] gi|14334858|gb|AAK59607.1| putative nodulin protein [Arabidopsis thaliana] gi|14994253|gb|AAK73261.1| nodulin-like protein [Arabidopsis thaliana] gi|17104641|gb|AAL34209.1| putative nodulin protein [Arabidopsis thaliana] gi|330254309|gb|AEC09403.1| nodulin MtN21 /EamA-like transporter-like protein [Arabidopsis thaliana]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 168/220 (76%), Gaps = 7/220 (3%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA+++T GCFS++ F+ILQAITL+
Sbjct: 153 MIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVLVTIGCFSYACFMILQAITLR 210

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WDTKL+ + YSGI+CS L YY+
Sbjct: 211 TYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYV 270

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
            G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYLGR++GA++I  GLYLV+WGK K
Sbjct: 271 GGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGK 330

Query: 181 DHKSPS--PSTDEHLPPAEQTNNTGSNGKENFGHEVTKID 218
           D+K  S     DE   P  + +    NGK+N  HEV  I 
Sbjct: 331 DYKYNSTLQLDDESAQPKLELSG---NGKDNVDHEVITIS 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553757|gb|AAM62850.1| nodulin-like protein [Arabidopsis thaliana]

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 167/218 (76%), Gaps = 3/218 (1%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA+++T GCFS++ F+ILQAITL+
Sbjct: 135 MIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVLVTIGCFSYACFMILQAITLR 192

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WDTKL+ + YSGI+CS L YY+
Sbjct: 193 TYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYV 252

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
            G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYLGR++GA++I  GLYLV+WGK K
Sbjct: 253 GGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGK 312

Query: 181 DHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKID 218
           D+K  S    +      +   +G NGK+N  HEV  I 
Sbjct: 313 DYKYNSTLQLDDKSAQPKLELSG-NGKDNVDHEVITIS 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570708|ref|XP_003553527.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 164/208 (78%), Gaps = 1/208 (0%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           MVMTLIKGP+L+LF T  +  H   + G    ++IKG++MIT GCFS + F+ILQAIT++
Sbjct: 152 MVMTLIKGPVLDLFGTHTSNTHNQQNGGVNLQHAIKGSVMITIGCFSCACFMILQAITIE 211

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
           AYPAELSLTAWIC  GTVEG + AL+MER   S W++ WDTKL+A+VYSGI+CSG+ YYI
Sbjct: 212 AYPAELSLTAWICLLGTVEGGVVALVMERKNLSAWSLQWDTKLLAAVYSGIVCSGMAYYI 271

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QG VMKDRGPVFV  F+PLCMVIVAIM +  LAE MYLGR +GAI+II GLYLVVWGKS+
Sbjct: 272 QGAVMKDRGPVFVTTFNPLCMVIVAIMGSFFLAEIMYLGRAVGAIVIILGLYLVVWGKSQ 331

Query: 181 DHKSPSPSTDEHLPPAEQTNNTGSNGKE 208
           D++S SP T EH+  ++QT    +NGKE
Sbjct: 332 DYESSSPITKEHILASKQTVEE-NNGKE 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498302|gb|AFK37217.1| unknown [Medicago truncatula]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/215 (62%), Positives = 167/215 (77%), Gaps = 3/215 (1%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           MVMTLIKGPIL LF    +      + G    +++KG++MIT GCFS + F ILQA+TL+
Sbjct: 152 MVMTLIKGPILNLFGIHESSAQIQHNGGVNLQHAVKGSIMITIGCFSCACFTILQAVTLE 211

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
           AYPAELSLTAWIC  GTVEG + ALIMERG+ S+W++ WDTKL+A+VYSGI+CSG+ YYI
Sbjct: 212 AYPAELSLTAWICLLGTVEGGIVALIMERGEPSVWSLSWDTKLLAAVYSGIVCSGMAYYI 271

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QG+VM+ RGPVFV  F+PLCMVIVAIMS  ILAE++YLGR+IGA++II GLYLVVWGKSK
Sbjct: 272 QGVVMRYRGPVFVTTFNPLCMVIVAIMSPFILAEKIYLGRVIGAVVIILGLYLVVWGKSK 331

Query: 181 DHKSPSPSTDEHLPPAEQTNNTGSNGKENF-GHEV 214
           D+  PSP   + + PA+QT    +N KE F  HEV
Sbjct: 332 DYDRPSPIIKDEILPAKQT--IENNDKEKFHSHEV 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510463|ref|XP_003625520.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355500535|gb|AES81738.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/215 (62%), Positives = 166/215 (77%), Gaps = 3/215 (1%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           MVMTLIKGPIL LF    +      + G    +++KG++MIT GCFS + F ILQA+TL+
Sbjct: 152 MVMTLIKGPILNLFGIHESSAQIQHNGGVNLQHAVKGSIMITIGCFSCACFTILQAVTLE 211

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSLTAWIC  GTVEG + ALIMERG+ S+W++ WDTKL+A+VYSGI+CSG+ YYI
Sbjct: 212 TYPAELSLTAWICLLGTVEGGIVALIMERGEPSVWSLSWDTKLLAAVYSGIVCSGMAYYI 271

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           QG+VM+ RGPVFV  F+PLCMVIVAIMS  ILAE++YLGR+IGA++II GLYLVVWGKSK
Sbjct: 272 QGVVMRYRGPVFVTTFNPLCMVIVAIMSPFILAEKIYLGRVIGAVVIILGLYLVVWGKSK 331

Query: 181 DHKSPSPSTDEHLPPAEQTNNTGSNGKENF-GHEV 214
           D+  PSP   + + PA+QT    +N KE F  HEV
Sbjct: 332 DYDRPSPIIKDEILPAKQT--IENNDKEKFHSHEV 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827251|ref|XP_002881508.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327347|gb|EFH57767.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/219 (60%), Positives = 165/219 (75%), Gaps = 9/219 (4%)

Query: 1   MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
           M+MTL+KGP+++LFWTKG     H ++GT  H++IKGA+++T GCFS++ F+ILQAITL+
Sbjct: 114 MIMTLVKGPVVDLFWTKGVS--AHNTAGTDIHSAIKGAVLVTIGCFSYACFMILQAITLR 171

Query: 61  AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
            YPAELSLTAWIC  GT+EGT  AL+ME+G    WAI WDTKL+ + YSGI+CS L YY+
Sbjct: 172 TYPAELSLTAWICLMGTIEGTAVALVMEKGNPGAWAIGWDTKLLTATYSGIVCSALAYYV 231

Query: 121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
            G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYLGR++GA++I  GLYLV+WGK K
Sbjct: 232 GGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGK 291

Query: 181 DHKSPS--PSTDEHLPPAEQTNNTGSNGKENFGHEVTKI 217
           D+K  S     DE   P  +       GK+N  HEV  I
Sbjct: 292 DYKYNSTLQLNDESAQPKLEL-----IGKDNVDHEVITI 325

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.968	0.557	0.589	1.1e-66
TAIR|locus:2049837	336	UMAMIT13 "Usually multiple aci	0.885	0.577	0.598	1e-61
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.885	0.518	0.538	5.6e-52
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.831	0.473	0.464	1.5e-44
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.817	0.479	0.497	6.4e-44
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.954	0.564	0.442	4e-42
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.881	0.496	0.441	5.9e-41
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.821	0.477	0.467	9.6e-41
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.831	0.452	0.429	4.8e-39
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.904	0.502	0.344	6.9e-31

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 129/219 (58%), Positives = 158/219 (72%)

Query:     1 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
             M+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA+++T GCFS++ F+ILQAITL+
Sbjct:   153 MIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVLVTIGCFSYACFMILQAITLR 210

Query:    61 AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
              YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WDTKL+ + YSGI+CS L YY+
Sbjct:   211 TYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYV 270

Query:   121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVWGKSK 180
              G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYL            LYLV+WGK K
Sbjct:   271 GGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGK 330

Query:   181 DHK--SPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKI 217
             D+K  S     DE   P  + +    NGK+N  HEV  I
Sbjct:   331 DYKYNSTLQLDDESAQPKLELSG---NGKDNVDHEVITI 366

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2049837 UMAMIT13 "Usually multiple acids move in and out Transporters 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 118/197 (59%), Positives = 144/197 (73%)

Query:     1 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
             MVMTL+KGP L+LFWTKG       + GT  H+SIKGA+++T GCFS++ F+ILQAITLK
Sbjct:   126 MVMTLVKGPALDLFWTKGPS--AQNTVGTDIHSSIKGAVLVTIGCFSYACFMILQAITLK 183

Query:    61 AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
              YPAELSL  WIC  GT+EG + AL+ME+G  S+WAI WDTKL+   YSGI+CS L YYI
Sbjct:   184 TYPAELSLATWICLIGTIEGVVVALVMEKGNPSVWAIGWDTKLLTITYSGIVCSALGYYI 243

Query:   121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVWGKSK 180
              G+VMK RGPVFV AF PLCM++VAIMS+II  EQMYL            LYLV+WGK+K
Sbjct:   244 GGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIWGKAK 303

Query:   181 DHKSPS-PSTDEHLPPA 196
             D++ PS P  D+ L  A
Sbjct:   304 DYEYPSTPQIDDDLAQA 320

GO:0016020 "membrane" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 105/195 (53%), Positives = 135/195 (69%)

Query:     1 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
             M+MT++KGP++ L W    + H   S+     +  KGA +I  GC  W+ FI LQAITLK
Sbjct:   146 MLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQAITLK 205

Query:    61 AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
             +YP ELSLTA+ICF G++E T+ AL +ERG  S WAIH D+KL+A+VY G+ICSG+ YY+
Sbjct:   206 SYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLDSKLLAAVYGGVICSGIGYYV 265

Query:   121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVWGKSK 180
             QG++MK RGPVFV AF+PL MVIVAI+ +IILAE M+L            LY V+WGKSK
Sbjct:   266 QGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSK 325

Query:   181 DHKSPSPST-DEHLP 194
             D  S S S  D+ LP
Sbjct:   326 DEPSSSFSDMDKELP 340

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 86/185 (46%), Positives = 127/185 (68%)

Query:     1 MVMTLIKGPILELFWTKGA--ENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAIT 58
             +VMTL KGP++ L W+     + +GH ++    +N + G L+I  GC +WS F +LQ+IT
Sbjct:   151 LVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLGCVAWSGFYVLQSIT 210

Query:    59 LKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 118
             +K YPA+LSL+A IC  G V+    AL++ER  +  WA+ WD +L A +Y+GI+ SG+TY
Sbjct:   211 IKTYPADLSLSALICLAGAVQSFAVALVVERHPSG-WAVGWDARLFAPLYTGIVSSGITY 269

Query:   119 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVWGK 178
             Y+QG+VMK RGPVFV AF+PLCM++VA++++ IL EQ++             LY+VVWGK
Sbjct:   270 YVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAAGLYMVVWGK 329

Query:   179 SKDHK 183
              KD++
Sbjct:   330 GKDYE 334

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 92/185 (49%), Positives = 121/185 (65%)

Query:     1 MVMTLIKGPILELFWTKGAENHGHGSSGT----TTHNSIKGALMITAGCFSWSFFIILQA 56
             MVMTL KGP +ELF T  +  HG GSSGT    T  N + G L +     +W+ F ILQ+
Sbjct:   149 MVMTLYKGPAIELFKTAHSSLHG-GSSGTSSETTDQNWVTGTLAVMGSITTWAGFFILQS 207

Query:    57 ITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 116
              TLK YPAELSL  WIC  GTV  T+A+LIM R   S W +  D+  +A+VYSG++CSG+
Sbjct:   208 FTLKKYPAELSLVMWICAMGTVLNTIASLIMVRD-VSAWKVGMDSGTLAAVYSGVVCSGM 266

Query:   117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVW 176
              YYIQ IV+++RGPVF  +FSP+CM+I A +  ++LAE+++L            LY VVW
Sbjct:   267 AYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVW 326

Query:   177 GKSKD 181
             GK+KD
Sbjct:   327 GKAKD 331

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 96/217 (44%), Positives = 130/217 (59%)

Query:     1 MVMTLIKGPILELFWTKGAENHGHG-SSGTTT-HNSIKGALMITAGCFSWSFFIILQAIT 58
             M+MTL KGP +E+   K A N  HG SS T T  + + G + I     +W+ F ILQ+ T
Sbjct:   149 MIMTLYKGPAIEI--VKAAHNSFHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYT 206

Query:    59 LKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 118
             LK YPAELSL   IC  GT+   +A+LIM R   S W I  D+  +A+VYSG++CSG+ Y
Sbjct:   207 LKVYPAELSLVTLICGIGTILNAIASLIMVRDP-SAWKIGMDSGTLAAVYSGVVCSGIAY 265

Query:   119 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVWGK 178
             YIQ IV+K RGPVF  +FSP+CM+I A +  ++LAE+++L            LY VVWGK
Sbjct:   266 YIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGK 325

Query:   179 SKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVT 215
             SKD  +P    DE +    Q     +  K+  GH+V+
Sbjct:   326 SKDEVNP---LDEKIVAKSQELPITNVVKQTNGHDVS 359

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 90/204 (44%), Positives = 121/204 (59%)

Query:     1 MVMTLIKGPILELFWTKGAENHG-------HGSSGTTTHNS--IKGALMITAGCFSWSFF 51
             ++MTL KGPI++     G    G       HG +G    +   I G LM+    F W+ F
Sbjct:   149 LLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDKHWIPGTLMLLGRTFGWAGF 208

Query:    52 IILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI 111
              ILQ+ TLK YPAELSLT  IC  GT+EGT  +L+  R   S W I +D+ L A+ YSG+
Sbjct:   209 FILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRD-LSAWKIGFDSNLFAAAYSGV 267

Query:   112 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXL 171
             ICSG+ YY+QG+VM++RGPVFVA F+PLC+VI A +  ++L+E ++L            L
Sbjct:   268 ICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAALGVVVLSESIHLGSVIGTLFIIVGL 327

Query:   172 YLVVWGKSKDHKSPSPSTD-EHLP 194
             Y VVWGK KD +      D + LP
Sbjct:   328 YTVVWGKGKDKRMTDDDEDCKGLP 351

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 86/184 (46%), Positives = 118/184 (64%)

Query:     1 MVMTLIKGPILELFWT---KGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAI 57
             M+MT +KG ++EL WT   +G   H H        +  +G++M+ A CFSWS +IILQA 
Sbjct:   146 MLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIARGSIMLVASCFSWSCYIILQAK 205

Query:    58 TLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 117
              L  Y AELSLTA +C  G +E T+  LI ER   S+W I+ D  L+AS+Y G++ SGL 
Sbjct:   206 ILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSVWKINPDVTLLASIYGGLV-SGLA 264

Query:   118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVWG 177
             YY+ G   K+RGPVFV+AF+PL MV+VAI+ST +  E++Y+            +YLV+WG
Sbjct:   265 YYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIYLVLWG 324

Query:   178 KSKD 181
             KSKD
Sbjct:   325 KSKD 328

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 82/191 (42%), Positives = 121/191 (63%)

Query:     1 MVMTLIKGPILELFWTK--GAENHGHGSSGTTTHNS-----IKGALMITAGCFSWSFFII 53
             M+MT+ KGPI+ELFWTK    ++  H ++ ++ ++S     +KG++++     +W+   +
Sbjct:   156 MLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLAWASLFV 215

Query:    54 LQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 112
             LQA  LK Y   +LSLT  ICF GT++      +ME    S W I WD  L+A+ YSGI+
Sbjct:   216 LQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNP-SAWRIGWDMNLLAAAYSGIV 274

Query:   113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLY 172
              S ++YY+QGIVMK RGPVF  AFSPL MVIVA+M + +LAE+++L            LY
Sbjct:   275 ASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLY 334

Query:   173 LVVWGKSKDHK 183
              V+WGK K+++
Sbjct:   335 AVLWGKQKENQ 345

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 71/206 (34%), Positives = 116/206 (56%)

Query:     1 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK 60
             ++M   KGP +  F      +H   +S   T + +K A+ +     SW+ F +LQA TLK
Sbjct:   149 ILMIFYKGPFINFF-----RSHLTAASSPPTADYLKAAVFLLLASLSWASFFVLQAATLK 203

Query:    61 AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYI 120
              Y A LS++  +CF GT++    A +ME   +++  I +D  L+AS Y+GI+ S + YY+
Sbjct:   204 KYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSAL-NIGFDMNLLASAYAGIMSSSIAYYV 262

Query:   121 QGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVWGKSK 180
             QG++M+ +GPVFV AF+PL +VIV+IMS  +L + +YL            +Y V+WGK  
Sbjct:   263 QGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLGGVIGVVVLMVGVYAVLWGKHV 322

Query:   181 DHKSPSPSTDEHLPPAEQTNNTGSNG 206
             D        ++++   +  +  G+NG
Sbjct:   323 DDDGEETRHEDNVVAVKCCS--GNNG 346

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	6e-23
pfam00892	126	pfam00892, EamA, EamA-like transporter family	3e-09
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-06
PRK11453	299	PRK11453, PRK11453, O-acetylserine/cysteine export	2e-05
TIGR03340	281	TIGR03340, phn_DUF6, phosphonate utilization assoc	6e-05

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 94.3 bits (234), Expect = 6e-23
 Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 4/150 (2%)

Query: 35  IKGALMITAGCF-SWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKAS 93
           I GAL+   G F S SF  ILQA  +  YPA  +++       ++  ++  L++E+   S
Sbjct: 189 IGGALLTIQGIFVSVSF--ILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246

Query: 94  IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILA 153
           +W IH+D  L+  V   II S + Y I    ++ +GP+++A F PL ++I  +M  I L 
Sbjct: 247 VWIIHFDITLITIVTMAIITS-VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 305

Query: 154 EQMYLGRIIGAIIIIGGLYLVVWGKSKDHK 183
           + +YLG +IG I+I  G Y V+WGK+ + K
Sbjct: 306 DSLYLGCLIGGILITLGFYAVMWGKANEEK 335

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 25/131 (19%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 46  FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVA 105
            SW+ + +     L+     L+ TA+      +   +  L + R   ++ ++     ++A
Sbjct: 1   LSWALYFVFSKKLLERISP-LTFTAYRFLIAGI-LLILLLFLLRKPFALLSLKA---ILA 55

Query: 106 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAI 165
            +Y G+  + L Y +    +K       +  + L  V   I+S ++L E++ L +++G +
Sbjct: 56  LLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIV 115

Query: 166 IIIGGLYLVVW 176
           +I+ G+ L++ 
Sbjct: 116 LILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 25  GSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAA 84
              G     S+ G L+  A    W+ +  L     +  P      A +         L  
Sbjct: 143 LGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLGPV---TLALLLQLLLALLLLLL 199

Query: 85  LIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIV 144
             +    A I +  W    +  +Y G+  +GL Y +    ++  G   VA  S L  V  
Sbjct: 200 FFLSGFGAPILSRAW----LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFA 255

Query: 145 AIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180
           A++  ++L E +   +++GA +++ G+ L      +
Sbjct: 256 ALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRARR 291

Length = 292

>gnl|CDD|183142 PRK11453, PRK11453, O-acetylserine/cysteine export protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 38/151 (25%), Positives = 77/151 (50%), Gaps = 6/151 (3%)

Query: 32  HNSIKGALMITAGCFSWSFFIIL--QAITLKAYPAELSLTAWICFFGTVEGTLAALIMER 89
           H ++ G ++  A  FSW+   I   + ++    PA +SL  W      +   +A+LI++ 
Sbjct: 139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILD- 197

Query: 90  GKASIWA--IHWD-TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAI 146
           G A++    +  D T +++ +Y   + + + Y I G ++       VA  S L  V+   
Sbjct: 198 GSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLA 257

Query: 147 MSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177
            + ++L E++   + +GA++I+ GLY+ V+G
Sbjct: 258 SAALLLDERLTGLQFLGAVLIMAGLYINVFG 288

Length = 299

>gnl|CDD|234171 TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 82  LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCM 141
              L ++R   S++         A++  G +  G  Y +    M       V A     +
Sbjct: 191 FLLLYLKRHGRSMFPYARQILPSATL--GGLMIGGAYALVLWAMTRLPVATVVALRNTSI 248

Query: 142 VIVAIMSTIILAEQMYLGRIIGAIIIIGGL 171
           V   ++    L E+ YL R++G  II+ GL
Sbjct: 249 VFAVVLGIWFLNERWYLTRLMGVCIIVAGL 278

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira. Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PLN00411	358	nodulin MtN21 family protein; Provisional	99.88
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.79
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.77
COG2510	140	Predicted membrane protein [Function unknown]	99.76
PRK11272	292	putative DMT superfamily transporter inner membran	99.72
PRK11689	295	aromatic amino acid exporter; Provisional	99.72
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.68
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.66
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.65
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.61
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.58
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.58
PRK15430	296	putative chloramphenical resistance permease RarD;	99.49
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.47
PRK15430	296	putative chloramphenical resistance permease RarD;	99.44
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.41
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.41
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.36
KOG2765	416	consensus Predicted membrane protein [Function unk	99.3
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.29
PLN00411	358	nodulin MtN21 family protein; Provisional	99.29
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.2
PRK11272	292	putative DMT superfamily transporter inner membran	99.19
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.18
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.18
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.15
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.14
KOG1580	337	consensus UDP-galactose transporter related protei	99.13
PRK11689	295	aromatic amino acid exporter; Provisional	99.13
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.12
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.12
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.97
COG2962	293	RarD Predicted permeases [General function predict	98.94
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.94
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.85
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.83
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.73
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.73
COG2962	293	RarD Predicted permeases [General function predict	98.69
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.67
KOG1581	327	consensus UDP-galactose transporter related protei	98.66
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.66
KOG2766	336	consensus Predicted membrane protein [Function unk	98.63
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.46
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.35
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.33
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.25
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.24
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.24
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.23
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.22
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.19
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	98.16
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.15
KOG1582	367	consensus UDP-galactose transporter related protei	98.15
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.11
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.05
PRK11431	105	multidrug efflux system protein; Provisional	97.97
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.96
PRK13499	345	rhamnose-proton symporter; Provisional	97.95
COG2076	106	EmrE Membrane transporters of cations and cationic	97.94
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.92
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.92
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.86
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.86
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.85
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.69
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.61
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.52
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.14
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.05
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.91
KOG3912	372	consensus Predicted integral membrane protein [Gen	96.81
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.81
PRK13499	345	rhamnose-proton symporter; Provisional	96.72
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.52
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.7
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.61
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.55
KOG2765	416	consensus Predicted membrane protein [Function unk	95.01
KOG1443	349	consensus Predicted integral membrane protein [Fun	94.61
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.4
KOG1580	337	consensus UDP-galactose transporter related protei	94.22
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	93.52
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	92.92
KOG3912	372	consensus Predicted integral membrane protein [Gen	92.88
PRK02237	109	hypothetical protein; Provisional	92.71
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	92.47
KOG1581	327	consensus UDP-galactose transporter related protei	92.45
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	91.94
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	91.93
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	91.51
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.26
KOG4831	125	consensus Unnamed protein [Function unknown]	90.0
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	89.87
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	89.58
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	85.91
COG1742	109	Uncharacterized conserved protein [Function unknow	85.19
KOG2766	336	consensus Predicted membrane protein [Function unk	85.15
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	84.84

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.88  E-value=1.9e-21  Score=167.04  Aligned_cols=150  Identities=31%  Similarity=0.647  Sum_probs=123.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  112 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  112 (219)
                      +...|++++++++++|++|.+++|+..+++|+....+++++..+++...+.++..++.+...|....+.....+++.+++
T Consensus       186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~  265 (358)
T PLN00411        186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII  265 (358)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH
Confidence            44679999999999999999999999999975667788888888888777776655422333332222344557777765


Q ss_pred             hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCCC
Q 027773          113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHK  183 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~~  183 (219)
                       +.++|.+|++++++.||++++++.+++|+++++++++++||++++.+++|+++|+.|+++..+.+++|.+
T Consensus       266 -t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~  335 (358)
T PLN00411        266 -TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK  335 (358)
T ss_pred             -HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence             6789999999999999999999999999999999999999999999999999999999999987665544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.79  E-value=3.8e-18  Score=143.33  Aligned_cols=140  Identities=13%  Similarity=0.152  Sum_probs=115.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC  113 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  113 (219)
                      ...|++++++++++|+.|.+..|+..++.+ +... .+...++++.+.+.....+.  ...+   +...|..+++.|+++
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~--~~~~---~~~~~~~~l~lgv~~  218 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG--EALW---HWSILPLGLAVAILS  218 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC--cccC---CHHHHHHHHHHHHHH
Confidence            467999999999999999999999987774 5554 45666666666665543221  1111   113465678999999


Q ss_pred             hHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773          114 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       114 ~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~  180 (219)
                      +.++|.+|+++++++++++++++.+++|+++++++++++||++++.+++|+++|++|++...+.+++
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999998776544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.77  E-value=1.8e-17  Score=139.56  Aligned_cols=145  Identities=22%  Similarity=0.344  Sum_probs=115.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCc--cceeeccchhHHHHHhHH
Q 027773           35 IKGALMITAGCFSWSFFIILQAITLKAYPA--ELSLTAWICFFGTVEGTLAALIMERGKA--SIWAIHWDTKLVASVYSG  110 (219)
Q Consensus        35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g  110 (219)
                      ..|++++++++++|+.|.++.|+..++.++  ......+.+.++.+......+..++...  ..+...+...|..+++.+
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            579999999999999999999998765532  2344556666666555544444433111  111112235788999999


Q ss_pred             HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      +++++++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|++++++|+++..+.++
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            999999999999999999999999999999999999999999999999999999999999999876554

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.76  E-value=2.8e-17  Score=118.07  Aligned_cols=136  Identities=16%  Similarity=0.151  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773           37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  116 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i  116 (219)
                      -.++++++++++++..++.|...++. ||...++.+.++..++++.+.+..+.  +....-.+++.|..+++.|+ ++++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~--~~~~~~~~~k~~lflilSGl-a~gl   79 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN--WQAGGEIGPKSWLFLILSGL-AGGL   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc--eecccccCcceehhhhHHHH-HHHH
Confidence            46899999999999999999999988 58888999999888888777664432  21111124477888888985 8899


Q ss_pred             HHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       117 ~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      ++.+|++|++...++++.++..+.|+++++++++++||+++..+++|+++|++|++++.+
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999999988754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.72  E-value=1.2e-16  Score=134.19  Aligned_cols=141  Identities=16%  Similarity=0.157  Sum_probs=118.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC  113 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  113 (219)
                      ...|++++++++++|+.|.+..||..++.  +...+.+++..+++.+.++....+. +..  ..++...|..+++.++++
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~i~~l~i~~  222 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGE-RLT--ALPTLSGFLALGYLAVFG  222 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCC-ccc--ccCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999875433  4556778888888887777654332 211  112335788899999999


Q ss_pred             hHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          114 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       114 ~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      +++++.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++..++++
T Consensus       223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999876544

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.72  E-value=7.5e-17  Score=135.62  Aligned_cols=137  Identities=10%  Similarity=0.149  Sum_probs=106.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC  113 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  113 (219)
                      ...|++++++++++|+.|.++.||..++. ++....   ...+.+.+.+.... ++ .. ... .+...|..+++.+ ++
T Consensus       154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~-~~-~~-~~~-~~~~~~~~l~~~~-~~  224 (295)
T PRK11689        154 NPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFL-SP-QP-AMV-FSLPAIIKLLLAA-AA  224 (295)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHH-hc-Cc-ccc-CCHHHHHHHHHHH-HH
Confidence            35699999999999999999999997766 455432   23333444333332 22 11 111 1224677777777 47


Q ss_pred             hHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          114 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       114 ~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      ++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus       225 t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        225 MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            899999999999999999999999999999999999999999999999999999999988876443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.68  E-value=1.2e-15  Score=125.61  Aligned_cols=135  Identities=19%  Similarity=0.269  Sum_probs=114.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHH
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI  111 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  111 (219)
                      ....|++++++++++|+.+.+..|+..++.+ ++.....+++.++.+++.+..+..++ .. .+   +...|..+++.++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~---~~~~~~~~~~~~~  199 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP-NP-QA---LSLQWGALLYLGL  199 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC-CC-Cc---chHHHHHHHHHHH
Confidence            4578999999999999999999999987763 23455557788888888877764333 11 11   2256777899999


Q ss_pred             hhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhh
Q 027773          112 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLY  172 (219)
Q Consensus       112 ~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~  172 (219)
                      +++.++|.+|++++++.++++++.+.+++|++++++++++++|++++.+++|+++++.|++
T Consensus       200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999864

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.66  E-value=8.6e-16  Score=129.51  Aligned_cols=145  Identities=14%  Similarity=0.141  Sum_probs=110.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHh--hCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cee-----eccchhHH
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKAS--IWA-----IHWDTKLV  104 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~-----~~~~~~~~  104 (219)
                      ...|++++++++++|++|.+..||..+  +. ++...+.+++..+++.+.++....++.+..  .+.     ......+.
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT  221 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence            467999999999999999999999987  66 589999999999999999888765531110  010     00001121


Q ss_pred             HHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          105 ASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       105 ~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      ..++.+..+....+.++++++++.+|++++++.+++|+++++++++++||++++.+++|+++++.|++++.+.|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~  296 (302)
T TIGR00817       222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA  296 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            122222222233334666899999999999999999999999999999999999999999999999999987554

specificities overlap.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.65  E-value=1e-15  Score=111.72  Aligned_cols=125  Identities=26%  Similarity=0.413  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHH
Q 027773           46 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVM  125 (219)
Q Consensus        46 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al  125 (219)
                      ++||.+.+..|+..++. ++...+++++..+.+ +++...+... ..  +...+...+..+++.+++++.+++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGR-KP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcc-cc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence            47999999999999998 599999999999998 6666655444 21  2222335677788899988999999999999


Q ss_pred             hhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          126 KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       126 ~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      ++.+++.++++.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.61  E-value=5.5e-14  Score=119.21  Aligned_cols=152  Identities=16%  Similarity=0.238  Sum_probs=124.7

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHH
Q 027773           27 SGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVAS  106 (219)
Q Consensus        27 ~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l  106 (219)
                      ++.++.+...|+++++++++++|+++++.++..++.+ ......+.-+++.++..+...+.++...+.....  .....+
T Consensus       159 ~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~~~~  235 (334)
T PF06027_consen  159 DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQVIGL  235 (334)
T ss_pred             cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhhHHH
Confidence            3345677899999999999999999999999999985 7888888888999999888877776333332222  233333


Q ss_pred             HhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773          107 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  181 (219)
Q Consensus       107 ~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~  181 (219)
                      +....++...-|.+....++..+|+...+-..+..+++++++++++|+++++..++|.++|+.|.+++...++++
T Consensus       236 ~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  236 LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            444445667778888999999999999999999999999999999999999999999999999999998766543

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.58  E-value=3.4e-14  Score=113.51  Aligned_cols=144  Identities=13%  Similarity=0.077  Sum_probs=121.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773           30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS  109 (219)
Q Consensus        30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (219)
                      ....+..|..+++.++.||++|.+..+|..+..+ .-.-+...+.+++++.+|+...-.+     ..+.++.-...-+..
T Consensus       142 ~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-----~~l~~p~ll~laLgv  215 (292)
T COG5006         142 VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-----PALFSPSLLPLALGV  215 (292)
T ss_pred             cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-----hhhcChHHHHHHHHH
Confidence            3456789999999999999999999999987664 6677888999999999998863222     112222445566788


Q ss_pred             HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      +++++.+.|++...++++++....+.+..++|.++.+.++++++|.+++.||+|++.|+.+..-..+.-+
T Consensus       216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~  285 (292)
T COG5006         216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR  285 (292)
T ss_pred             HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999988886665443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.58  E-value=3.1e-14  Score=118.95  Aligned_cols=134  Identities=17%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCCchH----HHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHH
Q 027773           35 IKGALMITAGCFSWSFFIILQAITLKAYPAEL----SLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSG  110 (219)
Q Consensus        35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  110 (219)
                      ..|..++++++++|++|.+..|+..++.+ +.    ..+.+.+...++...+.....+. .  .+. ..+..++.+++.+
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~  217 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHG-R--SMF-PYARQILPSATLG  217 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhc-c--chh-hhHHHHHHHHHHH
Confidence            46888999999999999998887654442 22    12223333222222222111111 1  111 1123456677888


Q ss_pred             HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhh
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYL  173 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l  173 (219)
                      .+.+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++
T Consensus       218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            889999999999999999999999999999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.49  E-value=2.5e-13  Score=114.28  Aligned_cols=132  Identities=11%  Similarity=0.099  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchh-HHHHHhHHHhhhHH
Q 027773           39 LMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTK-LVASVYSGIICSGL  116 (219)
Q Consensus        39 ~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~i  116 (219)
                      +++++++++|+.|.+..|+..++.. +....+.+.+..+.....+.   ... ....+. ..+.. +..++..|+ .+.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~g~-~t~i  225 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADS-STSHMG-QNPMSLNLLLIAAGI-VTTV  225 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccC-Cccccc-CCcHHHHHHHHHHHH-HHHH
Confidence            4688899999999998888753221 22333344444443332211   111 111111 11122 333334444 6789


Q ss_pred             HHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       117 ~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +|.+|++++++.++++++++.+++|+++++++++++||++++.+++|+++|++|+.+...
T Consensus       226 ~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        226 PLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888777654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.47  E-value=6.8e-13  Score=114.18  Aligned_cols=143  Identities=18%  Similarity=0.189  Sum_probs=111.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCC------chHHHHHHHHHHHHHHHHHHHHHHhcCC-cccee----eccchh
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLKAYP------AELSLTAWICFFGTVEGTLAALIMERGK-ASIWA----IHWDTK  102 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~----~~~~~~  102 (219)
                      ...|++++++++++|+.+.++.|+..++..      ++.....+...+++++++++..+.+... ...+.    ......
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            467999999999999999999999987541      3555666668899999988877555311 11110    000112


Q ss_pred             HHHHHhHHHhhhHHHHHHHHH----HHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          103 LVASVYSGIICSGLTYYIQGI----VMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       103 ~~~l~~~g~~~~~i~~~l~~~----al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      +..+++ .++.+++++++|+.    ++++++|...+..+++.|+++++++++++||++++.+++|+++++.|++++.+.
T Consensus       272 ~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        272 KGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            233344 45667999999984    999999999999999999999999999999999999999999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.44  E-value=2.1e-12  Score=108.64  Aligned_cols=140  Identities=13%  Similarity=0.146  Sum_probs=111.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcccee--eccchhHHHHHhH
Q 027773           32 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA--IHWDTKLVASVYS  109 (219)
Q Consensus        32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~  109 (219)
                      .+...|.+++++++++|+...+..|.. .+. ++....++|+.++.+++.++.... + +.....  ..+...+ .....
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~   78 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSIC-R-QWSYLKTLIQTPQKI-FMLAV   78 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHH-c-cHHHHHHHHcCHHHH-HHHHH
Confidence            355689999999999999999999765 566 589999999999988776665432 2 111100  0011223 23345


Q ss_pred             HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +.+..++.+.++++++++.+++.++++.++.|++++++++++++|+++..+++|+++.++|+.+...
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            6667788899999999999999999999999999999999999999999999999999999988763

>TIGR00688 rarD rarD protein

Probab=99.41  E-value=3.6e-12  Score=104.94  Aligned_cols=138  Identities=11%  Similarity=0.159  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCC--ccceeec-cchhHHHHHhHHHh
Q 027773           36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGK--ASIWAIH-WDTKLVASVYSGII  112 (219)
Q Consensus        36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~~g~~  112 (219)
                      +|.+++++++++|+...++.|. ..+. ++....++|++++++++.++.....+..  ...++.. ....+..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            4899999999999999999997 4566 5999999999999888766554332200  0111111 11223345555554


Q ss_pred             hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                       ..+.+.++++++++++++.++.+.++.|+++++++++++||+++..+++|+++.++|+.+...
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence             678899999999999999999999999999999999999999999999999999999987653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.41  E-value=9.6e-12  Score=103.14  Aligned_cols=136  Identities=19%  Similarity=0.289  Sum_probs=107.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHH-HHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTA-WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  112 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  112 (219)
                      ...|++++++++++|+.+.+..|+.. +. ++..... +...  ............. .  .. ......+..+.+.|++
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~g~~  223 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSG-F--GA-PILSRAWLLLLYLGVF  223 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhcc-c--cc-cCCHHHHHHHHHHHHH
Confidence            57899999999999999999999887 54 3555555 3333  2222222221111 1  11 1122568888999999


Q ss_pred             hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      ++++++.+|++++++.++..++++.+++|++++++++++++|+++..+++|+++++.|+.+...+
T Consensus       224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         224 STGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999998865

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.36  E-value=2.3e-11  Score=101.57  Aligned_cols=134  Identities=13%  Similarity=0.111  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHH
Q 027773           38 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT  117 (219)
Q Consensus        38 ~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~  117 (219)
                      .++.++++++|+...+..|+..++.+ +.  ..+++..+++.++++......  ...|+.+. ..++..+..+.+.....
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~   76 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLA--QVGWSRLP-ATFWLLLAISAVANMVY   76 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcc--cCCCCCcc-hhhHHHHHHHHHHHHHH
Confidence            46889999999999999998877653 43  465666666666665543211  12233222 33444444555577888


Q ss_pred             HHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       118 ~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      +.++++++++.+++.++++.++.|+++++++++++||+++..+++|+++++.|+++....
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999987653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.30  E-value=5.6e-11  Score=100.07  Aligned_cols=154  Identities=14%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC---chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhH
Q 027773           27 SGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKL  103 (219)
Q Consensus        27 ~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (219)
                      ++....+..+|+++++++++.||+|.++.||...+..   |-..+-.+.-++..++++|..++......+.+.+|.....
T Consensus       238 ~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~  317 (416)
T KOG2765|consen  238 SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQF  317 (416)
T ss_pred             ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCcee
Confidence            4445566789999999999999999999999877763   2223333344455566665555544433456667776777


Q ss_pred             HHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773          104 VASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       104 ~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~  180 (219)
                      ..+++.++++++++-++|.+|+--.++..+++-+.++.+.+++...++=+.++++..++|.+.|+.|.++++.....
T Consensus       318 ~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  318 SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999875543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.29  E-value=8.2e-11  Score=89.20  Aligned_cols=139  Identities=18%  Similarity=0.208  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhC------CchHHHHHHHHHHHHHHHHHHHHHHhcCCccce--eec------cchh
Q 027773           37 GALMITAGCFSWSFFIILQAITLKAY------PAELSLTAWICFFGTVEGTLAALIMERGKASIW--AIH------WDTK  102 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~------~~~~  102 (219)
                      |.++++++.++.+++.++.|+..++.      .++..+..+....+.+++++..++.|.......  ...      .+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67899999999999999999988872      288999999999999999999988776221111  000      1134


Q ss_pred             HHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          103 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       103 ~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +..++..|+++ ..-....++.+++.+|...+....+..+..+++++++++|++++.+++|+++.+.|.+++.+
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            55555565544 56677778999999999999999999999999999999999999999999999999988753

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.29  E-value=7.7e-11  Score=101.61  Aligned_cols=141  Identities=12%  Similarity=0.080  Sum_probs=116.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhh
Q 027773           35 IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS  114 (219)
Q Consensus        35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  114 (219)
                      ..-.+.+++.-++++.+.++.|...+..-++....++|+.+++++++++.+..++ .. .++......|..+...|+++ 
T Consensus        12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~-~~-~~~~~~~~~~~~l~l~g~~g-   88 (358)
T PLN00411         12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNR-SR-SLPPLSVSILSKIGLLGFLG-   88 (358)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHH-hc-ccCcchHHHHHHHHHHHHHH-
Confidence            4467788999999999999999999886689999999999999999888765443 11 11111114566777788776 


Q ss_pred             HHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHH------hCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          115 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII------LAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~ll------l~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      .+.+.++++++++++++.++++.++.|++++++++++      ++|+++..+++|+++.++|+++....+
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            5667789999999999999999999999999999999      699999999999999999999877544

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.20  E-value=8.3e-10  Score=93.27  Aligned_cols=145  Identities=15%  Similarity=0.194  Sum_probs=117.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHH--HhcCCcccee--eccchhHHHHHh
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALI--MERGKASIWA--IHWDTKLVASVY  108 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~~  108 (219)
                      ...|+++++++.++-+...+.+++..++++ ++...+++...++.+..++..+.  .+. ..+.+.  ...+..+..++.
T Consensus       152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~-~~~~~~f~~~~p~~~~~l~~  230 (303)
T PF08449_consen  152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGE-FRSAIRFISAHPSVLLYLLL  230 (303)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhH-hhHHHHHHHHhHHHHHHHHH
Confidence            345999999999999999999999998765 67789999999999988877776  222 111111  122233444444


Q ss_pred             HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773          109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~  180 (219)
                      . .+...++..+.++..++.++...+....+.-+++++++++++++++++.+|+|+++++.|..+....+++
T Consensus       231 ~-s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k  301 (303)
T PF08449_consen  231 F-SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK  301 (303)
T ss_pred             H-HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence            4 4466888888889999999999999999999999999999999999999999999999999999876654

; GO: 0055085 transmembrane transport

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.19  E-value=6e-10  Score=93.60  Aligned_cols=131  Identities=9%  Similarity=0.054  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHH
Q 027773           38 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT  117 (219)
Q Consensus        38 ~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~  117 (219)
                      .+..++..+.|+...+..|...++. +|...+++|+..++++++++... .+ .  ..  +...++......|.+.....
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~-~~-~--~~--~~~~~~~~~~~~g~~~~~~~   82 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLL-RG-H--PL--PTLRQWLNAALIGLLLLAVG   82 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHH-hC-C--CC--CcHHHHHHHHHHHHHHHHHH
Confidence            5567888999999999999888877 59999999999999988776543 22 1  11  12245666777887776777


Q ss_pred             HHHHHHHH-hhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          118 YYIQGIVM-KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       118 ~~l~~~al-~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +.+++++. ++.+++.++.+.++.|+++.+++++ +||+++..+++|+++.++|+++...
T Consensus        83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            88889998 9999999999999999999999985 7999999999999999999998764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.18  E-value=6.4e-10  Score=82.19  Aligned_cols=121  Identities=17%  Similarity=0.123  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773           36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG  115 (219)
Q Consensus        36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  115 (219)
                      .|.++.+.+.++-+...++.|+.+++.+ ....... .    . ......   .            .....++.|+++.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~-~~~~~~---~------------~p~~~i~lgl~~~~   59 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----I-AALLAF---G------------LALRAVLLGLAGYA   59 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----H-HHHHHH---h------------ccHHHHHHHHHHHH
Confidence            4788999999999999999999988874 3321111 0    0 100000   0            01123678888999


Q ss_pred             HHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHH--HhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          116 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI--ILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       116 i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~l--ll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      +++.+|.+++++.+++.+.++....+++..+.++.  ++||++++.+++|+++|++|+++..+.+
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999888888885  7999999999999999999999987543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.18  E-value=2.3e-11  Score=98.20  Aligned_cols=165  Identities=10%  Similarity=0.051  Sum_probs=127.3

Q ss_pred             CCccccccCcCcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 027773            8 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM   87 (219)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   87 (219)
                      |.++..--.-++-++..+.+++..+.+..|...++.+++.-+.-+++.|+..|+.. ....+.+..+++.+..++.....
T Consensus       163 GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~i  241 (346)
T KOG4510|consen  163 GVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASI  241 (346)
T ss_pred             eEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhc
Confidence            55555544455555555555555677788999999999999999999999988773 55555566666666665444322


Q ss_pred             hcCCccceeecc-chhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHH
Q 027773           88 ERGKASIWAIHW-DTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAII  166 (219)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~l  166 (219)
                           ..+++|. ..+|+.++.+|+++ .+++.+.+.++|+-.|..+++..+++.+++.++.+++++|.|+++.|.|+++
T Consensus       242 -----g~~~lP~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~  315 (346)
T KOG4510|consen  242 -----GAVQLPHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVM  315 (346)
T ss_pred             -----cceecCccccceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceee
Confidence                 1344432 36788888899855 8899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhccCC
Q 027773          167 IIGGLYLVVWGKS  179 (219)
Q Consensus       167 i~~gv~l~~~~~~  179 (219)
                      ++...+.+..+|.
T Consensus       316 vvsS~v~~a~~kw  328 (346)
T KOG4510|consen  316 VVSSTVWVALKKW  328 (346)
T ss_pred             eehhHHHHHHHHH
Confidence            9988887766554

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.15  E-value=2.6e-10  Score=82.48  Aligned_cols=108  Identities=19%  Similarity=0.314  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHH
Q 027773           70 AWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST  149 (219)
Q Consensus        70 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~  149 (219)
                      .++..++.+++..+.....+ ..+.++......+..++..|++....++.++++++++.++ .++++..+.|+++.++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGR-LRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence            35666666766666654322 1111221112445556667777777899999999999995 888999999999999999


Q ss_pred             HHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          150 IILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       150 lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      ++++|+++..+++|++++++|+.+..+.+.
T Consensus        80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   80 LFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999987554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.14  E-value=7.5e-10  Score=91.03  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhh
Q 027773           48 WSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKD  127 (219)
Q Consensus        48 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~  127 (219)
                      |+...+..|...+...++....+++++.+.+.+.+....    .      +....+..++..|.++..+.+.++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~----~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~   70 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR----R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKR   70 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh----c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566777788877665568888999998888877665431    1      122456667778888889999999999999


Q ss_pred             cCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          128 RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       128 ~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      .+++.++++..++|+++.+++++++||++++.+++|+++.++|+.+...
T Consensus        71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            9999999999999999999999999999999999999999999988764

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.13  E-value=2.7e-09  Score=84.99  Aligned_cols=149  Identities=11%  Similarity=0.100  Sum_probs=122.9

Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcc--ceeeccch
Q 027773           25 GSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKAS--IWAIHWDT  101 (219)
Q Consensus        25 ~~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~  101 (219)
                      ..++-.......|.++.+++...-++....+.|..+.+. +...++++..+++.+.+..-.++.+. -++  .+....+.
T Consensus       161 Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE-lweF~yF~~RhP~  239 (337)
T KOG1580|consen  161 KVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE-LWEFFYFVQRHPY  239 (337)
T ss_pred             ccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh-HHHHHHHHHhccH
Confidence            455666677789999999999999999998988877654 56788999999999888766554433 221  12223346


Q ss_pred             hHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          102 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       102 ~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      .|+.+...++ ++++++++.+.-+...+|-.-+.+....-.|+++.++++++.+++..||+|.++++.|+.+=.
T Consensus       240 ~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  240 VFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            7888888877 779999999999999999999999999999999999999999999999999999999988744

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.13  E-value=1.1e-09  Score=92.04  Aligned_cols=132  Identities=13%  Similarity=0.041  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhh
Q 027773           35 IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS  114 (219)
Q Consensus        35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  114 (219)
                      ..+.+++++++++|+...+..|...+..+ |....++|+.++++++.++.   .. +  ..+  . ..+..++ .+.+..
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~-~--~~~--~-~~~~~~~-~~~l~~   71 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF-P--RLR--Q-FPKRYLL-AGGLLF   71 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc-c--ccc--c-ccHHHHH-HHhHHH
Confidence            34678899999999999999999998885 99999999999988876542   11 1  111  0 1122222 333344


Q ss_pred             HHHHHHHHHHHh----hcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          115 GLTYYIQGIVMK----DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       115 ~i~~~l~~~al~----~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      .+.+.+++.+++    ..++..++.+.++.|+++.++++++++|++++.+++|+++.++|+++....
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            455555666665    457778889999999999999999999999999999999999999887753

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.12  E-value=1.5e-09  Score=91.57  Aligned_cols=126  Identities=10%  Similarity=0.098  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHH
Q 027773           38 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT  117 (219)
Q Consensus        38 ~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~  117 (219)
                      .+++++++++|+...+..|...++. +|....++|+.++++.++++.   .. +..        .+..++..|++.....
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~---~~-~~~--------~~~~~~~~g~~~~~~~   72 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFV---AR-PKV--------PLNLLLGYGLTISFGQ   72 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHh---cC-CCC--------chHHHHHHHHHHHHHH
Confidence            4678999999999999999988888 599999999998876654432   11 111        1222334455444455


Q ss_pred             HHHHHHHHhh-cCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          118 YYIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       118 ~~l~~~al~~-~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +.+++.++++ .+++.++.+.++.|+++.++++++++|+++..+++|+++.++|+++...
T Consensus        73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            5677788887 6888999999999999999999999999999999999999999998874

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.12  E-value=9.1e-10  Score=92.49  Aligned_cols=132  Identities=16%  Similarity=0.203  Sum_probs=100.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH---HHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICF---FGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS  109 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (219)
                      +...|.+++++++++++.|.+..|+.  ++ ++...++.++.   ++++...+   ...+ . ..+  .. ...+..+..
T Consensus       149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~---~~~~-~-~~~--~~-~~~~~~~~~  217 (290)
T TIGR00776       149 NFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNL---GHIL-A-KPL--KK-YAILLNILP  217 (290)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHH---HHhc-c-cch--HH-HHHHHHHHH
Confidence            34679999999999999999999876  35 57777555554   23332221   1111 0 111  11 233334448


Q ss_pred             HHhhhHHHHHHHHHHHh-hcCceeeeeccchHHHHHHHHHHHHhCCcCchHHH----HHHHHHHHhhhhhhc
Q 027773          110 GIICSGLTYYIQGIVMK-DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVVW  176 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~-~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~----lG~~li~~gv~l~~~  176 (219)
                      |++ .++++.+|..+.+ +.+++.++.+.+.+|+.++++++++++|+.++.++    +|+++++.|+.+...
T Consensus       218 Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       218 GLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            887 6999999999999 99999999999999999999999999999999999    999999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.97  E-value=1.9e-08  Score=84.87  Aligned_cols=121  Identities=14%  Similarity=0.152  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhcC
Q 027773           50 FFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRG  129 (219)
Q Consensus        50 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~  129 (219)
                      .+++++|...+..+.|...+.+++.++.+...+. +....  ....+.+. .+|..++..|++. ...+.+.++++++++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~-~~~~~~~~~g~~~-~~~~~~~~~~l~~~s   90 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGL--PKRLKISS-ALLKLLLPVAIVH-TIGHVTSNVSLSKVA   90 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCC--CCCCCCCH-HHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence            3456789999886679999999999887776544 11111  11112222 5677788888874 777899999999999


Q ss_pred             ceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          130 PVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       130 a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      ++.++++..+.|++++++++++++|+++..+++|++++++|+.+..
T Consensus        91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999998754

specificities overlap.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.94  E-value=1.3e-08  Score=83.47  Aligned_cols=144  Identities=10%  Similarity=0.183  Sum_probs=117.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcccee-eccchhHHHHHhHH
Q 027773           32 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA-IHWDTKLVASVYSG  110 (219)
Q Consensus        32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g  110 (219)
                      ++...|+++++.+-+.|+......|-+ ++.| +..+...|.+.+..++..+.....+ ....++ ...+..+..++..+
T Consensus         3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~~~~~p~~~~~~~l~a   79 (293)
T COG2962           3 KDSRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQ-WRELKQLLKQPKTLLMLALTA   79 (293)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCcHHHHHHHHHH
Confidence            344679999999999999988877655 6664 8899999999999998877765543 222222 23345677777776


Q ss_pred             HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      ++. ..-+.+|.||...-.+..+|+-.+++|++.+++|.+++||+++..|++.+++..+|+..-.+...
T Consensus        80 ~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          80 LLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             HHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            644 77799999999999999999999999999999999999999999999999999999988776543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.94  E-value=3.8e-08  Score=84.79  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeec-cchhHHHHHhHHHhhhHHHHHHHHHH
Q 027773           46 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIH-WDTKLVASVYSGIICSGLTYYIQGIV  124 (219)
Q Consensus        46 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~g~~~~~i~~~l~~~a  124 (219)
                      .+-..+.+..|...+..|-|+.++.+|++++.++..++. .... . ..++.. ....+..++..|++... .+...+.+
T Consensus        59 ~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~-~~~~-~-~~~~~~~~~~~~~~llp~gl~~~~-~~~~~~~s  134 (350)
T PTZ00343         59 ALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYW-ATGF-R-KIPRIKSLKLFLKNFLPQGLCHLF-VHFGAVIS  134 (350)
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHH-HhCC-C-CCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            333456778899999884499999999999987765442 2211 1 111221 22356777888886644 46667799


Q ss_pred             HhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          125 MKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       125 l~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +++.+++.+.++..++|++++++++++++|+++..++++++++++|+++...
T Consensus       135 l~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        135 MGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            9999999999999999999999999999999999999999999999998764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.85  E-value=2.7e-08  Score=71.69  Aligned_cols=67  Identities=19%  Similarity=0.295  Sum_probs=61.9

Q ss_pred             HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      .++++.++++.++.+++++++.+.+-++.++.++++.+++++++||++++.+++|++++++|+.+..
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3346678899999999999999999999999999999999999999999999999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.83  E-value=1.5e-07  Score=77.86  Aligned_cols=143  Identities=13%  Similarity=0.226  Sum_probs=107.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  112 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  112 (219)
                      ....+..+.+..++.|+......|.......+.......+...+.+...+... . . .....+..  ..+......+.+
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~--~~~~~~~~~~~~   78 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-L-E-PRGLRPAL--RPWLLLLLLALL   78 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-h-h-cccccccc--cchHHHHHHHHH
Confidence            34678888999999999999988888776223555555577777666322221 1 1 11111111  224455667777


Q ss_pred             hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHH-HHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773          113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST-IILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~-lll~E~~~~~~~lG~~li~~gv~l~~~~~~~  180 (219)
                      .....+.+++.++++.++..++++.++.|+++.++++ ++++|++++.++.|..+.+.|+++..+....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            8899999999999999999999999999999999997 6779999999999999999999999875543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.73  E-value=2e-07  Score=78.37  Aligned_cols=132  Identities=19%  Similarity=0.175  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773           37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  116 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i  116 (219)
                      |.+++++++++|+...+..|+.. ..+ +....  +..++.++...+..+... +.  ..  ....+..-+..|+ .-.+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~~--~~--~~~~~~~g~l~G~-~w~i   71 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-PE--FW--ALSIFLVGLLSGA-FWAL   71 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-Cc--cc--ccHHHHHHHHHHH-HHHh
Confidence            67899999999999999888775 332 33333  455566655554443332 11  11  1122222222333 3577


Q ss_pred             HHHHHHHHHhhcCceeeeeccc-hHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHhhhhhhccC
Q 027773          117 TYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       117 ~~~l~~~al~~~~a~~~s~~~~-l~Pv~~~l~~~lll~E~~~~~~----~lG~~li~~gv~l~~~~~  178 (219)
                      ++.+|+.++++.+.+.+.++.+ ++++++.+++.+++||+.+..+    ++|.++++.|+++....+
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            8899999999999999999999 9999999999999999999999    999999999999886543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.73  E-value=2.9e-08  Score=83.68  Aligned_cols=153  Identities=14%  Similarity=0.146  Sum_probs=115.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh--CC-chHHHHHHHHHHHHHHHH-HHHHHHhcCCccc-eee-ccchh
Q 027773           29 TTTHNSIKGALMITAGCFSWSFFIILQAITLKA--YP-AELSLTAWICFFGTVEGT-LAALIMERGKASI-WAI-HWDTK  102 (219)
Q Consensus        29 ~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~--~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~-~~~-~~~~~  102 (219)
                      .+.+-+..|.++++++.+..+...++.|+..++  .. +++....++..++.+.++ |.....++ .... +.. +++..
T Consensus       156 ~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~-~~~~~~~~~~~~~~  234 (316)
T KOG1441|consen  156 TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEG-NKFVGFLTAPWFVT  234 (316)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcc-cceeeeeccccchh
Confidence            344566889999999999999999999999852  22 788999999999999998 76665555 2220 011 11112


Q ss_pred             HHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773          103 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH  182 (219)
Q Consensus       103 ~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~  182 (219)
                      ...+++..+ +...-...-++.+.+++|...++.+.+.-++.++.+++++++++++.+.+|+++.++|++++.+.|.+++
T Consensus       235 ~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~  313 (316)
T KOG1441|consen  235 FLILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK  313 (316)
T ss_pred             hHHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            222222222 3233345556889999999999999999999999999999999999999999999999999998776654


Q ss_pred             C
Q 027773          183 K  183 (219)
Q Consensus       183 ~  183 (219)
                      +
T Consensus       314 ~  314 (316)
T KOG1441|consen  314 K  314 (316)
T ss_pred             c
Confidence            3

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.69  E-value=3.4e-07  Score=75.30  Aligned_cols=134  Identities=10%  Similarity=0.098  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHH
Q 027773           40 MITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYY  119 (219)
Q Consensus        40 ~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~  119 (219)
                      .++.-++.|+.|..+-|+. + . ++.+-....++.-....+.+.+..++ ..+.........+..++..|. .|.+...
T Consensus       152 val~la~sf~~Ygl~RK~~-~-v-~a~~g~~lE~l~l~p~al~yl~~l~~-~~~~~~~~~~~~~~LLv~aG~-vTavpL~  226 (293)
T COG2962         152 VALALALSFGLYGLLRKKL-K-V-DALTGLTLETLLLLPVALIYLLFLAD-SGQFLQQNANSLWLLLVLAGL-VTAVPLL  226 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhc-C-C-chHHhHHHHHHHHhHHHHHHHHHHhc-CchhhhcCCchHHHHHHHhhH-HHHHHHH
Confidence            4566678899988855544 2 2 45666666666666666555554444 221011122245666777776 6799999


Q ss_pred             HHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          120 IQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       120 l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      +|..+-++++-+..+.+.|.+|..-.+++++++||+++..+++..++|-+|+.++....
T Consensus       227 lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         227 LFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987643

>TIGR00688 rarD rarD protein

Probab=98.67  E-value=2.1e-07  Score=76.53  Aligned_cols=107  Identities=9%  Similarity=0.001  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHH
Q 027773           39 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY  118 (219)
Q Consensus        39 ~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~  118 (219)
                      +++++++++|+.|.+..|+..++.  ........ +.......+... ..+ .......+....|..+++.|++ +.++|
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~g~~-t~i~~  222 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKALKNTD--LAGFCLET-LSLMPVAIYYLL-QTD-FATVQQTNPFPIWLLLVLAGLI-TGTPL  222 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHHH-HHHHHHHHHHHH-Hhc-cCcccccCchhHHHHHHHHHHH-HHHHH
Confidence            467889999999999988875432  22222111 111111111111 111 1111111122367788888875 89999


Q ss_pred             HHHHHHHhhcCceeeeeccchHHHHHHHHHHHH
Q 027773          119 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII  151 (219)
Q Consensus       119 ~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~ll  151 (219)
                      .+|++++++.++++++++.|++|++++++++++
T Consensus       223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.66  E-value=1.6e-07  Score=77.56  Aligned_cols=153  Identities=16%  Similarity=0.220  Sum_probs=121.6

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceee--ccchh
Q 027773           26 SSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAI--HWDTK  102 (219)
Q Consensus        26 ~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~  102 (219)
                      .+.++..+..+|..++...-++=+..+..++++.+++. +++.++.+..+++++..... ++..+.......+  ..+..
T Consensus       162 ~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~  240 (327)
T KOG1581|consen  162 SSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDV  240 (327)
T ss_pred             ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhH
Confidence            34455577789999999999999999999999998754 78899999999998888766 3333311111111  12234


Q ss_pred             HHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773          103 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       103 ~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~  180 (219)
                      ++-++.... +..+++.+.++-+++.|+-..+.++.+.-.++++++.+.++.++++.||+|..+++.|+.+-...+++
T Consensus       241 ~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  241 AFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            555555555 55899999999999999999999999999999999999999999999999999999999987655444

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.66  E-value=8e-07  Score=74.72  Aligned_cols=130  Identities=13%  Similarity=0.037  Sum_probs=100.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHH
Q 027773           32 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI  111 (219)
Q Consensus        32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  111 (219)
                      -+...|..++++++++|+....+.|...++. ++....++|+.+++++++++... ..     ...+. .++...+..|+
T Consensus         8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~-~~-----~~~~~-~~~~~~~~~g~   79 (293)
T PRK10532          8 LPVWLPILLLLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKP-WR-----LRFAK-EQRLPLLFYGV   79 (293)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhH-Hh-----ccCCH-HHHHHHHHHHH
Confidence            3446799999999999999999999999888 49999999999999888765421 11     11111 45555666776


Q ss_pred             hhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          112 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       112 ~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      + .+..+.++++++++++++.++.+.++.|+++.+++    +|++.  +..++.+.++|+++...
T Consensus        80 ~-~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         80 S-LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             H-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeee
Confidence            4 47778889999999999999999999999998877    35554  45566777888887653

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.63  E-value=1.6e-07  Score=75.85  Aligned_cols=146  Identities=15%  Similarity=0.253  Sum_probs=113.7

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHH
Q 027773           26 SSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVA  105 (219)
Q Consensus        26 ~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (219)
                      .+..++.+...|+.+.++++-++|..++....+.|+. +...++....++|+++..+- +++++.+  ...+.++.....
T Consensus       156 gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~--~~tl~w~~~i~~  231 (336)
T KOG2766|consen  156 GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHH--VSTLHWDSAIFL  231 (336)
T ss_pred             ccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-Hhhhccc--eeeEeehHHHHH
Confidence            4666777888999999999999999999999999998 58889999999999999877 4555412  222222223332


Q ss_pred             HHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          106 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       106 l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      ++. ..++...-|.+.-..++.-+++...+-..+.-.|++++  ..||-..+|...+..+.+..|.+++..++
T Consensus       232 yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re  301 (336)
T KOG2766|consen  232 YLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE  301 (336)
T ss_pred             HHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence            222 34455555666677788899999999999999999988  78888899999999999999999985443

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.46  E-value=5.4e-06  Score=70.72  Aligned_cols=138  Identities=16%  Similarity=0.090  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773           36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG  115 (219)
Q Consensus        36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  115 (219)
                      .|.+++++-+..-.....+..+ .-..  |...+++....-.+...+... ..+ ....+.......|+..+..+++- .
T Consensus        17 lgQ~lsl~~~~t~~~s~~l~~~-~~~~--P~~Qs~~~Y~~l~~vy~~~~~-~r~-~~~~~~~~~~~~~w~y~lla~~D-v   90 (334)
T PF06027_consen   17 LGQVLSLCITGTGTFSSLLANK-GVNI--PTFQSFFNYVLLALVYTPILL-YRR-GFKKWLKVLKRPWWKYFLLALLD-V   90 (334)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhc-CccC--cHHHHHHHHHHHHHHHhhhhh-hcc-ccccchhhcchhHHHHHHHHHHH-H
Confidence            4555555555554444444433 1222  444444444333333333222 222 11222211124566666677654 7


Q ss_pred             HHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          116 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       116 i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      .+.++...|+++++.+-+.++.....++++++++++++++.++.+++|++++++|+.++.....
T Consensus        91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            8899999999999999999999999999999999999999999999999999999998876543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.35  E-value=9.8e-06  Score=58.98  Aligned_cols=69  Identities=17%  Similarity=0.363  Sum_probs=58.4

Q ss_pred             HHhhhHHHHHHHHHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          110 GIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      .++..+++++++..++++++.+.+=.+ .-+.-+.+.+++++++||++++.+++|+++|++|++......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            344558889999999999998765444 568888899999999999999999999999999999886533

>TIGR00803 nst UDP-galactose transporter

Probab=98.33  E-value=2.9e-06  Score=68.38  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=88.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHH-HHHHHHHHHHHHHHHHHHHhcCCc-ccee--eccchhHHHHHh
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSL-TAWICFFGTVEGTLAALIMERGKA-SIWA--IHWDTKLVASVY  108 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-~~~~--~~~~~~~~~l~~  108 (219)
                      +...|..+.+.++++-+...+.+++..|+....... .....+.+.+... ......+... ..+.  ...+...+    
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----  156 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTF-SVLLWSDGTLISNFGFFIGYPTAVW----  156 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHH-HHHhhcccchhhccCcccCCchHHH----
Confidence            556788888888888888888888876654311111 1111222222211 1111111010 1111  01111222    


Q ss_pred             HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773          109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV  174 (219)
Q Consensus       109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~  174 (219)
                      .-++...++..+..+.+++.++...+....++++++.++++++++|+++..+++|+.+++.|++++
T Consensus       157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            222344667778889999999999999999999999999999999999999999999999998753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.25  E-value=6.1e-05  Score=61.76  Aligned_cols=174  Identities=13%  Similarity=0.061  Sum_probs=112.4

Q ss_pred             EeeeeeCCccccccCcCcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHH
Q 027773            2 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEG   80 (219)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~   80 (219)
                      |-||++++-++.-.+.+.    +.+..++-..+..|+.+...+.+.-|...+.+++.-+++. ++-..+++....+....
T Consensus       134 IcTl~s~~d~~~~~~~l~----~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~F  209 (330)
T KOG1583|consen  134 ICTLFSSKDGRSKLSGLD----SGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLF  209 (330)
T ss_pred             eEEeecCcchhhhhcccc----cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchH
Confidence            446666665553121221    2233445566678999999999999999998888888765 55677888887776655


Q ss_pred             HHHHH-HHhc----CCcccee-----eccchhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHH
Q 027773           81 TLAAL-IMER----GKASIWA-----IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI  150 (219)
Q Consensus        81 ~~~~~-~~~~----~~~~~~~-----~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~l  150 (219)
                      +++.- +...    ...+...     ..-|..|+.++.- ++....+----+.--.+.++-.+++...+.-.+..+++++
T Consensus       210 lf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n-~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Sii  288 (330)
T KOG1583|consen  210 LFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFN-VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSII  288 (330)
T ss_pred             HHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHH-HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheee
Confidence            44331 0000    0001111     1122445554433 2233333333334445677788999999999999999999


Q ss_pred             HhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773          151 ILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       151 ll~E~~~~~~~lG~~li~~gv~l~~~~~~~  180 (219)
                      .++.+++++-|+|+.+++.|.++.....++
T Consensus       289 yF~Npft~~h~lGa~lVF~Gt~~fa~~~~~  318 (330)
T KOG1583|consen  289 YFENPFTPWHWLGAALVFFGTLLFANVWNH  318 (330)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999987654433

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=1.5e-05  Score=66.43  Aligned_cols=154  Identities=11%  Similarity=0.106  Sum_probs=120.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcccee---eccchhH
Q 027773           28 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWA---IHWDTKL  103 (219)
Q Consensus        28 ~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~  103 (219)
                      .++..-+..|..+++..+++-+.+.+..|+..+... +.+.++.+..+.+...+....++++..+.....   ...+..+
T Consensus       149 ~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~  228 (314)
T KOG1444|consen  149 FTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVL  228 (314)
T ss_pred             cccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHH
Confidence            344445556999999999999999999999877643 567888999999988888888766642200111   1223457


Q ss_pred             HHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773          104 VASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH  182 (219)
Q Consensus       104 ~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~  182 (219)
                      ..+.+.++++.++.|+. .++.+..+++..++.....-..+.+...++.+++.++..++|..+-++|-.++...+.+++
T Consensus       229 ~~~~lScv~gf~isy~s-~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k  306 (314)
T KOG1444|consen  229 VVMLLSCVMGFGISYTS-FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK  306 (314)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence            77888888887776665 6899999999999999888888888888889999999999999999999999887665443

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.24  E-value=1.8e-06  Score=68.49  Aligned_cols=149  Identities=13%  Similarity=0.151  Sum_probs=117.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccc-hhHHHHHhHH
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD-TKLVASVYSG  110 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g  110 (219)
                      ....|.+++...++.-+.+.+..|+..+-.+ .....++|..+.+..++..+.++++++.........+ -...++...|
T Consensus       152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg  231 (309)
T COG5070         152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG  231 (309)
T ss_pred             ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence            3456999999999999999999988876543 4678899999999999999998887644332222111 2355677788


Q ss_pred             HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH  182 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~  182 (219)
                      +.+.+++| +-.|.++-++.+..+++..++-.-..+.|.++++|+.+...+....+......++...+.+.+
T Consensus       232 l~svgiSy-~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~  302 (309)
T COG5070         232 LCSVGISY-CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ  302 (309)
T ss_pred             HHHhhhhh-ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            86655554 557999999999999999999999999999999999999999999998877777766554433

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.23  E-value=4.1e-05  Score=64.66  Aligned_cols=126  Identities=14%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhhCC-c--hHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHh
Q 027773           50 FFIILQAITLKAYP-A--ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMK  126 (219)
Q Consensus        50 ~~~i~~k~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~  126 (219)
                      .+.+.+++..++.. .  +..+++.++....+...+....... + ....    ..+...+..++ ...++..+-+.+++
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-~-~~~~----~~~~~~~~~~~-~~~~~~~~~~~al~   86 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-P-KSRK----IPLKKYAILSF-LFFLASVLSNAALK   86 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-c-CCCc----ChHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            34566777766543 3  6688888888888777665543321 1 1111    22333344444 55777888999999


Q ss_pred             hcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773          127 DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH  182 (219)
Q Consensus       127 ~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~  182 (219)
                      +++.....++....|+.+++++++++|++.+..++++++++.+|+.+....+.+.+
T Consensus        87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen   87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            99999999999999999999999999999999999999999999999887654433

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.22  E-value=9.8e-07  Score=71.79  Aligned_cols=137  Identities=12%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  112 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  112 (219)
                      ....|.++.-++ ..+....++.++.....  |.....-++++-.+...+..+...     ++.+.....-.++++-|+.
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~-----~~v~gp~g~R~~LiLRg~m  106 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYM-----QPVIGPEGKRKWLILRGFM  106 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEe-----eeeecCCCcEEEEEeehhh
Confidence            345688888888 66666677777676654  555555555444444433332211     1111111111223445553


Q ss_pred             hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      + ..+..+.+|++++++-+.+.++..+.|+++++++|++++|+.+....+|..+-+.|+++..+..
T Consensus       107 G-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  107 G-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             h-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            3 5667888999999999999999999999999999999999999999999999999999988643

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.00012  Score=62.06  Aligned_cols=150  Identities=17%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHH-HHHHHHHHHHHHHHhcCCcccee-eccchhHHH
Q 027773           28 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWIC-FFGTVEGTLAALIMERGKASIWA-IHWDTKLVA  105 (219)
Q Consensus        28 ~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~  105 (219)
                      .....+...|....+.+++.-+...+...+.+|+...+..+.-.++ +.|.++.+...+..+. ....|. +.  ..|-.
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~-~~i~~~gff--~G~s~  251 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG-EAINEYGFF--YGYSS  251 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCcc--ccccH
Confidence            4556777899999999999999999999999987653333333333 4455544444333222 211111 11  12222


Q ss_pred             HHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773          106 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       106 l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~  180 (219)
                      ..+.-++..+++=.+...-+++.+--.=.....+..+++.+.++.+++-+++....+|+.+|+.++.++...+.+
T Consensus       252 ~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  252 IVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR  326 (345)
T ss_pred             HHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence            233333344444455556677777766666777899999999999999999999999999999999999844433

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=98.16  E-value=8.2e-05  Score=55.66  Aligned_cols=132  Identities=15%  Similarity=0.095  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773           37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  116 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i  116 (219)
                      ..++++.+.++.++...++.++.++..+++..+++.+..+.+.+.++.++.++ .  .+....+..|+.++ .|+ ...+
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~-~--~~~~~~~~p~w~~l-GG~-lG~~   76 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR-P--SLASLSSVPWWAYL-GGL-LGVF   76 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc-c--ccchhccCChHHhc-cHH-HHHH
Confidence            46788999999999999999998887568999999999999999888776655 2  22211113344333 555 4466


Q ss_pred             HHHHHHHHHhhcCceeeeeccch-HHHHHHHHHHH----HhCCcCchHHHHHHHHHHHhhhh
Q 027773          117 TYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI----ILAEQMYLGRIIGAIIIIGGLYL  173 (219)
Q Consensus       117 ~~~l~~~al~~~~a~~~s~~~~l-~Pv~~~l~~~l----ll~E~~~~~~~lG~~li~~gv~l  173 (219)
                      .-.+..+.+++++++....+... |-+.+++++.+    .-++++++.+.+|++++++|+++
T Consensus        77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            67777899999999877766555 55556666765    24788999999999999999864

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.15  E-value=1.4e-05  Score=67.41  Aligned_cols=122  Identities=20%  Similarity=0.195  Sum_probs=91.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHH
Q 027773           31 THNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSG  110 (219)
Q Consensus        31 ~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  110 (219)
                      +.++..|.++++.++++.+...+++|+...+.+ .-..-.-.   .     ....           ..++.+|     .|
T Consensus         2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~~~~---~-----~~~~-----------l~~~~W~-----~G   56 (300)
T PF05653_consen    2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLRAGS---G-----GRSY-----------LRRPLWW-----IG   56 (300)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccccc---h-----hhHH-----------HhhHHHH-----HH
Confidence            356788999999999999999999999877664 21100000   0     0010           0010122     34


Q ss_pred             HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      ++..+++..+.+.|+...|++.++++..+.-++..+++..+++|+++...++|+++++.|..+....
T Consensus        57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            4444666778888999999999999999999999999999999999999999999999999876543

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.15  E-value=1.2e-05  Score=65.76  Aligned_cols=148  Identities=13%  Similarity=0.191  Sum_probs=114.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceee--ccchhHHHHH
Q 027773           31 THNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAI--HWDTKLVASV  107 (219)
Q Consensus        31 ~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~  107 (219)
                      .+-+..|.++.-++-++=|.--.++.+.++..| +...+.++...+|.+.++......+. ....|+.  ..+..-...+
T Consensus       185 PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge-~f~a~~fcaehp~~tyGy~  263 (367)
T KOG1582|consen  185 PNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE-LFSAWTFCAEHPVRTYGYA  263 (367)
T ss_pred             CCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc-chhhhHHHHhCcHhHHHHH
Confidence            344467999999999999998888999999877 45677788888888888777665544 4444442  1112122233


Q ss_pred             hHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      +.-.+.+.++...-..-++..|+..++.+....-..++++++++|..+++....-|..+++.|+++....++
T Consensus       264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            333346677777777778889999999999999999999999999999999999999999999999887663

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.11  E-value=6.1e-05  Score=54.05  Aligned_cols=68  Identities=19%  Similarity=0.364  Sum_probs=57.0

Q ss_pred             HhhhHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      +++.+++++++..++++++.+.+ +...-+.-+.+++++++++||++++.+++|++++++|++..+...
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44557888899999999988665 444567888889999999999999999999999999999986543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.05  E-value=9.1e-05  Score=52.99  Aligned_cols=65  Identities=9%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             HhhhHHHHHHHHHHHhhcCcee-eeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          111 IICSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~-~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      +++.++++++...++|++|.+. .+...-+.-+.+++.+++++||++++.+++|+.+++.|+...+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3355788999999999999854 4666778888889999999999999999999999999998764

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.97  E-value=0.00012  Score=52.12  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             HhhhHHHHHHHHHHHhhcCcee-eeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          111 IICSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~-~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +++.++++++...++|+++.+. .+...-+..+.+.+.+++++||++++.+++|+.+++.|++..+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            4455788999999999999854 56677788889999999999999999999999999999998754

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.96  E-value=0.00048  Score=57.37  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=104.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCC----chHHHHHHHHHHHHHHHHHHHHHHhcCCcc----ceeeccch---
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYP----AELSLTAWICFFGTVEGTLAALIMERGKAS----IWAIHWDT---  101 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~---  101 (219)
                      -...|..+.+++.++-++-..+.+..+++.|    +|.+..+.....-.+.+++..+.+|+....    .|...++.   
T Consensus       161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~  240 (349)
T KOG1443|consen  161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLIL  240 (349)
T ss_pred             eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHH
Confidence            4467999999999998888888888887765    678888888888888888888888873221    12222221   


Q ss_pred             -hHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773          102 -KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV  174 (219)
Q Consensus       102 -~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~  174 (219)
                       ....+...|..+.+..+ .-+.-+.+++.-..+...-..-+-+.+++..+.+|+++...|+|..++..|+...
T Consensus       241 rv~g~i~l~g~laF~l~~-sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  241 RVIGLISLGGLLAFLLEF-SEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence             12223333333322222 2345678889999999999999999999999999999999999999999999987

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.95  E-value=7.9e-05  Score=63.78  Aligned_cols=138  Identities=15%  Similarity=0.167  Sum_probs=92.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH-----HHhcCCccceeeccchhHHHHH
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAAL-----IMERGKASIWAIHWDTKLVASV  107 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~  107 (219)
                      +...|.++.+++++||+.+++-+|+ .++.+  +... |-  ++.++.+++..     +..+.-.+..+..+...+..-+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            4578999999999999999998887 45552  3322 33  22223322222     1111011112212223454445


Q ss_pred             hHHHhhhHHHHHHHHHHHhhcCceeeeecc-chHHHHHHHHHHHHhCCcC---c----hHHHHHHHHHHHhhhhhhcc
Q 027773          108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQM---Y----LGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~-~l~Pv~~~l~~~lll~E~~---~----~~~~lG~~li~~gv~l~~~~  177 (219)
                      +.|+ .=.+++..+..+++++|.+...++. -++-+.+.+++.++++|..   +    ..-.+|++++++|+++..+.
T Consensus        78 l~G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         78 LFGA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            5555 4488899999999999999888765 4778889999999999765   2    34688999999999998873

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.94  E-value=3.7e-05  Score=54.32  Aligned_cols=65  Identities=20%  Similarity=0.400  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHHhhcCce-eeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          113 CSGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~-~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      +..++|.+...++++++.. -.+...-.-.+.+++.++++|||++++.+++|..++++|++..+..
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            4578899999999999984 4577788888889999999999999999999999999999987754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.92  E-value=0.00017  Score=59.60  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=64.5

Q ss_pred             hhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeecc-chHHHHHHHHHHHHhCCcCchHHH----HHHHHHHHhhhhhh
Q 027773          101 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVV  175 (219)
Q Consensus       101 ~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~-~l~Pv~~~l~~~lll~E~~~~~~~----lG~~li~~gv~l~~  175 (219)
                      ..++.-+..|+ .=.+++..++.++++++.+++.++. -++-+.+.++++++|||.-+..++    ++.+++++|+++..
T Consensus        43 ~~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   43 TSFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            34555555665 4588999999999999999999998 567777899999999999886654    47788889999988


Q ss_pred             ccCCCCC
Q 027773          176 WGKSKDH  182 (219)
Q Consensus       176 ~~~~~~~  182 (219)
                      +++++++
T Consensus       122 ~~~~~~~  128 (269)
T PF06800_consen  122 YQDKKSD  128 (269)
T ss_pred             ccccccc
Confidence            7665544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=0.00038  Score=52.40  Aligned_cols=140  Identities=13%  Similarity=0.062  Sum_probs=97.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773           34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC  113 (219)
Q Consensus        34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  113 (219)
                      ..+..++++++.++-.....++.|+.+...+|+...+..+.+|++.+..+.++.++  ...+....+..||. ..-|+++
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~--~~~~a~~~~~pwW~-~~GG~lG   79 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG--HPGLAAVASAPWWA-WIGGLLG   79 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhccCCchHH-HHccchh
Confidence            35677889999999999999999998887679999999999999999988887544  22222222223433 2344332


Q ss_pred             hHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          114 SGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIIL----AEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       114 ~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll----~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                       .+--+.-.....+++++.. .....-|.+.+++++.+=+    ..++++.+++|++++++|+++..++
T Consensus        80 -a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          80 -AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             -hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence             3334444566788887554 4455566677777776544    3678999999999999996665543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.86  E-value=0.00036  Score=57.70  Aligned_cols=132  Identities=19%  Similarity=0.245  Sum_probs=91.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH-HHHHHHHhcCCccceeeccchhHHHHHh
Q 027773           30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG-TLAALIMERGKASIWAIHWDTKLVASVY  108 (219)
Q Consensus        30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (219)
                      +..+...|.++.+++.+.|..|.++.|..  +. +++....-+. +|.++. .++..+... .  .+   ....|.. +.
T Consensus       132 ~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~-~~~~~~lPqa-iGm~i~a~i~~~~~~~-~--~~---~k~~~~n-il  200 (269)
T PF06800_consen  132 SKSNMKKGILALLISTIGYWIYSVIPKAF--HV-SGWSAFLPQA-IGMLIGAFIFNLFSKK-P--FF---EKKSWKN-IL  200 (269)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhc--CC-ChhHhHHHHH-HHHHHHHHHHhhcccc-c--cc---ccchHHh-hH
Confidence            35666789999999999999999986653  33 4666555554 333333 332222111 1  11   1122333 33


Q ss_pred             HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchH----HHHHHHHHHHhhhh
Q 027773          109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG----RIIGAIIIIGGLYL  173 (219)
Q Consensus       109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~----~~lG~~li~~gv~l  173 (219)
                      .|+ .-.++..+|..+.++.+.+..-.+..+.++++.+.++++|||+-+..    .++|.++++.|..+
T Consensus       201 ~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  201 TGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            444 44777888999999999999999999999999999999999998766    45678888777654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=1e-05  Score=66.22  Aligned_cols=152  Identities=11%  Similarity=0.032  Sum_probs=114.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcccee---eccchhHHHHH
Q 027773           32 HNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWA---IHWDTKLVASV  107 (219)
Q Consensus        32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~  107 (219)
                      .-...|.++.+.+.++-|+..+..|+...... .-+.++++..+.+.++.++...+.+. -...+.   .+....|..+.
T Consensus       181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge-~~~v~~~~~l~a~~Fw~~mt  259 (347)
T KOG1442|consen  181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE-FQAVVGFPHLPAIKFWILMT  259 (347)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch-HHHHcCcccchHHHHHHHHH
Confidence            34467999999999999999999987755443 34577888888888888877764332 222222   22225577777


Q ss_pred             hHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 027773          108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSP  185 (219)
Q Consensus       108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~~~~  185 (219)
                      ..|+++..++|.. .+=++-.+|..-..-....-..=.+++..+++|..+..-|-+-.+++.|-..+.+.|.++.+++
T Consensus       260 LsglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  260 LSGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             HHHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            8888776666554 3456778888888888888888899999999999999999999999999999998777665443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.85  E-value=0.00023  Score=58.31  Aligned_cols=135  Identities=18%  Similarity=0.205  Sum_probs=93.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773           31 THNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS  109 (219)
Q Consensus        31 ~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (219)
                      ..+...|.++.++++++-++..+..++.+|+.+ +.+..+......|.++.++.....++.......+.  ..|-...+.
T Consensus       109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f--~G~~~~~~~  186 (244)
T PF04142_consen  109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFF--HGYSWWVWI  186 (244)
T ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCch--hhcchHHHH
Confidence            455678999999999999999999999999874 33344444455555555554433222111111111  111112233


Q ss_pred             HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHH
Q 027773          110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII  167 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li  167 (219)
                      .++...++=.+....+|+.+...=.....+..+.+.++++++++.+++....+|+.++
T Consensus       187 ~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  187 VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            3444455556667788999998888999999999999999999999999999998763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.69  E-value=0.00029  Score=49.02  Aligned_cols=57  Identities=21%  Similarity=0.429  Sum_probs=35.5

Q ss_pred             HhhhHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHH
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII  167 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li  167 (219)
                      +.+.+++++++.+++++++.+.+ +...-+..+.+.+.+++++||++++.+++|+.+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33568889999999999999887 5556689999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.61  E-value=0.00065  Score=48.80  Aligned_cols=110  Identities=9%  Similarity=0.042  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHH
Q 027773           42 TAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQ  121 (219)
Q Consensus        42 l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~  121 (219)
                      ++-+++|++.+.+.||..+..+ +..-.. +..-....     ++.      +|        -++  ..+.....+-.+|
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~-~~~~~~-~~~~~~~~-----Ll~------n~--------~y~--ipf~lNq~GSv~f   58 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLE-KVKASL-QLLQEIKF-----LLL------NP--------KYI--IPFLLNQSGSVLF   58 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcC-CccchH-HHHHHHHH-----HHH------hH--------HHH--HHHHHHHHHHHHH
Confidence            3457899999999999988764 222221 21111111     111      11        111  1233335567788


Q ss_pred             HHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773          122 GIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV  174 (219)
Q Consensus       122 ~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~  174 (219)
                      ++.+.+.+-+.+.++ +.+.-+++++.++++.+|..+...++|++++++|+.+.
T Consensus        59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            899999999999999 59999999999988888888999999999999998764

Many members are annotated as potential transmembrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.52  E-value=0.00041  Score=56.89  Aligned_cols=79  Identities=13%  Similarity=0.236  Sum_probs=66.4

Q ss_pred             hHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773          102 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  181 (219)
Q Consensus       102 ~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~  181 (219)
                      +.+.+..-++ .-.+...+.+.++++++|+...++..+..+++++++++++|++++..||++..+.++|+.+........
T Consensus        16 ~~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   16 DTLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            3444444444 346667888899999999999999999999999999999999999999999999999999987655443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.14  E-value=0.00022  Score=57.68  Aligned_cols=134  Identities=13%  Similarity=0.120  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773           36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG  115 (219)
Q Consensus        36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  115 (219)
                      .+.+.+++=++.|+.......+...   +|...+.-+. ++++...+..+++.. +...+     ..+..-+..|. .=.
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT-~GALifaiiv~~~~~-p~~T~-----~~~iv~~isG~-~Ws   70 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTT-LGALIFAIIVFLFVS-PELTL-----TIFIVGFISGA-FWS   70 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeecCC---ChhHhhhhcc-HHHHHHHHHHheeec-Cccch-----hhHHHHHHhhh-Hhh
Confidence            3568899999999997775544422   3444444333 344444333332322 11111     23333333444 336


Q ss_pred             HHHHHHHHHHhhcCceeeeeccc-hHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHhhhhhhccCCC
Q 027773          116 LTYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWGKSK  180 (219)
Q Consensus       116 i~~~l~~~al~~~~a~~~s~~~~-l~Pv~~~l~~~lll~E~~~~~~----~lG~~li~~gv~l~~~~~~~  180 (219)
                      +++..++.+++.++.+++.++.. ++-+-+.+++++.|+|..++.+    .++.++++.|+++..++++.
T Consensus        71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~  140 (288)
T COG4975          71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN  140 (288)
T ss_pred             hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence            77899999999999999999865 6777888999999999999876    45667788999988775543

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.05  E-value=0.001  Score=54.64  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccc-----hhHHHHHhHHH
Q 027773           37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD-----TKLVASVYSGI  111 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~g~  111 (219)
                      |.+.+++|+++++...+=.|+.- .. |++.+-.+++....+..++..++.+.+....|.+...     .....+..+-.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~g-Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~   78 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-TG-DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT   78 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-CC-CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence            56789999999999999777653 22 5666666666555555544444322211111111000     00001111111


Q ss_pred             hhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHH-HhCCcC-----chHHHHHHHHHHHhhhhhhccCCCCC
Q 027773          112 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI-ILAEQM-----YLGRIIGAIIIIGGLYLVVWGKSKDH  182 (219)
Q Consensus       112 ~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~l-ll~E~~-----~~~~~lG~~li~~gv~l~~~~~~~~~  182 (219)
                      ++.++++.+|.               ..+-+.+-..+-+ +||++.     .+..++|++++++|..+...-|.+++
T Consensus        79 iGLglg~liW~---------------s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~  140 (254)
T PF07857_consen   79 IGLGLGMLIWG---------------SVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK  140 (254)
T ss_pred             hhhHHHHHHHH---------------HHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence            23344444443               1233333333322 444432     46689999999999988877665553

The region concerned is approximately 280 residues long.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.00049  Score=57.64  Aligned_cols=128  Identities=16%  Similarity=0.202  Sum_probs=97.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773           30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS  109 (219)
Q Consensus        30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (219)
                      ...++..|.++++.+.+..+...++.|+..++.. .   ...|              ...   ......  ..  .+.|.
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r--------------a~~---gg~~yl--~~--~~Ww~   69 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR--------------AGE---GGYGYL--KE--PLWWA   69 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc--------------ccC---CCcchh--hh--HHHHH
Confidence            3466778999999999999999998888766642 1   0000              000   011111  11  22356


Q ss_pred             HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773          110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH  182 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~  182 (219)
                      |.+..++|-.+.+.|....+++.++++..+..++.++++..+++|++++...+|++++++|-.+.....++++
T Consensus        70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~  142 (335)
T KOG2922|consen   70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ  142 (335)
T ss_pred             HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence            7777788889999999999999999999999999999999999999999999999999999988776554443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=96.81  E-value=0.0079  Score=49.80  Aligned_cols=149  Identities=19%  Similarity=0.171  Sum_probs=101.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ceeec-c--chh
Q 027773           28 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKAS-IWAIH-W--DTK  102 (219)
Q Consensus        28 ~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~-~--~~~  102 (219)
                      -.+.++...|+++.+.+-+.-|+..+.-.|..++.+ +|.....|.-++|.+++..++..+.-.+.. .+... .  -.+
T Consensus       168 ~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD  247 (372)
T KOG3912|consen  168 YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED  247 (372)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh
Confidence            334567788999999999999999998888877755 789999999999977766655443210100 00000 0  011


Q ss_pred             HHH---------HHhHHHhhhHHHHHHHH----HHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Q 027773          103 LVA---------SVYSGIICSGLTYYIQG----IVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIG  169 (219)
Q Consensus       103 ~~~---------l~~~g~~~~~i~~~l~~----~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~  169 (219)
                      |..         .++..+.+..++..+++    +--+..++++=.++..+...+-=+++..+..|.++..|++|.++.+.
T Consensus       248 ~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~  327 (372)
T KOG3912|consen  248 WGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIM  327 (372)
T ss_pred             HHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            111         11222223333333332    23356777888888888888888888889999999999999999999


Q ss_pred             hhhhhhc
Q 027773          170 GLYLVVW  176 (219)
Q Consensus       170 gv~l~~~  176 (219)
                      |+++++.
T Consensus       328 Gi~lY~~  334 (372)
T KOG3912|consen  328 GIILYNQ  334 (372)
T ss_pred             HHHHHHH
Confidence            9999874

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.81  E-value=0.00071  Score=57.32  Aligned_cols=119  Identities=15%  Similarity=0.190  Sum_probs=82.6

Q ss_pred             HHHHHHHHHh--hCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhc
Q 027773           51 FIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDR  128 (219)
Q Consensus        51 ~~i~~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~  128 (219)
                      .++..|..++  ..+-|...+..+...+.+..+..-.+-.. +  ....++...|..++..|++ ..++..+-+.++++.
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~-~--~~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v  107 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLV-P--PSKISSKLPLRTLLPLGLV-FCISHVLGNVSLSYV  107 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCC-C--CCccccccchHHHHHHHHH-HHHHHHhcchhhhcc
Confidence            4446788888  55566777777666666666554432211 1  1122232456677777774 488889999999999


Q ss_pred             CceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhh
Q 027773          129 GPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYL  173 (219)
Q Consensus       129 ~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l  173 (219)
                      +++.+-+.-.++|++++++++++.+|+.+...++-...++.|+.+
T Consensus       108 ~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~i  152 (316)
T KOG1441|consen  108 PVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAI  152 (316)
T ss_pred             chhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEE
Confidence            999999999999999999999999999887644333333333333

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.72  E-value=0.13  Score=44.36  Aligned_cols=145  Identities=13%  Similarity=0.096  Sum_probs=83.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHH-------HHHHHHH-hhCCchHHHHHHHHH---HHHHHHH-HHHHHHh-cC-Cc---
Q 027773           30 TTHNSIKGALMITAGCFSWSFFI-------ILQAITL-KAYPAELSLTAWICF---FGTVEGT-LAALIME-RG-KA---   92 (219)
Q Consensus        30 ~~~~~~~G~~~~l~sa~~~a~~~-------i~~k~~~-~~~~~~~~~~~~~~~---~~~v~~~-~~~~~~~-~~-~~---   92 (219)
                      ++.+...|.+.++++.+.++.|.       ...+... ... ++.....-+..   ++.++.- ++..+.. +. ..   
T Consensus       168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~  246 (345)
T PRK13499        168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK  246 (345)
T ss_pred             cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence            35677899999999999999999       4333221 122 33333333332   3333222 1111111 10 11   


Q ss_pred             cceeecc---chhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeee---cc-chHHHHHHHHHHHHhCCcCc------hH
Q 027773           93 SIWAIHW---DTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAA---FS-PLCMVIVAIMSTIILAEQMY------LG  159 (219)
Q Consensus        93 ~~~~~~~---~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~---~~-~l~Pv~~~l~~~lll~E~~~------~~  159 (219)
                      .....+.   ..+...-+..|+ .=.+++.+|..+-++.+......   +. .+..+++.++++ ++||.=+      ..
T Consensus       247 ~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~  324 (345)
T PRK13499        247 ADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRV  324 (345)
T ss_pred             hhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhH
Confidence            0111110   012211123333 33566778888888887665544   44 778899999998 5999977      56


Q ss_pred             HHHHHHHHHHhhhhhhcc
Q 027773          160 RIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       160 ~~lG~~li~~gv~l~~~~  177 (219)
                      -++|.++++.|..+....
T Consensus       325 l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        325 LSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            799999999998887654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.52  E-value=0.16  Score=41.61  Aligned_cols=103  Identities=12%  Similarity=-0.041  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773           37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  116 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i  116 (219)
                      -+++++.+.++.-...-+.|.+.... .+...+.++..++++++..+.-.+.+    ++.   ..+|..++..|+ +.+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~v-G~~g~t~lRl~~aaLIll~l~RPwr~----r~~---~~~~~~~~~yGv-sLg~   83 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLV-GAAGVTALRLAIAALILLALFRPWRR----RLS---KPQRLALLAYGV-SLGG   83 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHcccc-ChhhHHHHHHHHHHHHHHHHhhHHHh----ccC---hhhhHHHHHHHH-HHHH
Confidence            47788888888888888888888887 48889999999999988765432222    221   156777888887 5566


Q ss_pred             HHHHHHHHHhhcCceeeeeccchHHHHHHHHH
Q 027773          117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMS  148 (219)
Q Consensus       117 ~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~  148 (219)
                      -.+++|.++++++-..+-.+.++.|+...+++
T Consensus        84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            67888899999999999999999998876553

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.70  E-value=0.93  Score=38.86  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=56.1

Q ss_pred             HHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       118 ~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      ..+++.++.+++|+.......+....++++..++++++++..||...++...|+.++...
T Consensus       106 Nnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~  165 (345)
T KOG2234|consen  106 NNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP  165 (345)
T ss_pred             hhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            347789999999999999999999999999999999999999999999999999999843

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.61  E-value=0.1  Score=41.19  Aligned_cols=146  Identities=10%  Similarity=0.055  Sum_probs=92.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC--chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773           32 HNSIKGALMITAGCFSWSFFIILQAITLKAYP--AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS  109 (219)
Q Consensus        32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (219)
                      .+...|+.+++++++.-++|-+.-|+......  +.--++.-.-+...++....+++..-...++|+-....-|..+...
T Consensus       131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~  210 (290)
T KOG4314|consen  131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGA  210 (290)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhH
Confidence            45578999999999999999999999987654  2111111111122222222221111002233431111235555544


Q ss_pred             HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      +.+. ....++.+.++..+.|-..+.-..+..+.-.....++-+-..+.....|..++..|.++....+
T Consensus       211 A~L~-lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  211 AGLS-LAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             HHHH-HHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            4433 2224455678888888888888888888888889877777788889999999999999887543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.55  E-value=0.0097  Score=46.84  Aligned_cols=61  Identities=21%  Similarity=0.378  Sum_probs=57.4

Q ss_pred             HHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       118 ~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      .++|..++++++|+.++.+...+-.+..+++|+.+|+++...+++.+++.+.|+.+..+..
T Consensus        67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D  127 (290)
T KOG4314|consen   67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD  127 (290)
T ss_pred             CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence            7889999999999999999999999999999999999999999999999999998877544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.01  E-value=0.032  Score=47.94  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773          115 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  181 (219)
Q Consensus       115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~  181 (219)
                      .++.+.++.|+.+.+++-.+++..+.-.|+..++.++.+|++++.+.++..+-+.|++++...+.+.
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            4567888999999999999999999999999999999999999999999999999999998765443

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=94.61  E-value=0.44  Score=40.15  Aligned_cols=125  Identities=11%  Similarity=0.132  Sum_probs=85.1

Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhcCcee
Q 027773           54 LQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKAS-IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVF  132 (219)
Q Consensus        54 ~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~  132 (219)
                      ..+...+..+=|+-.+..++.+-..+....-...+...+. .-...+....-.+.-.|+ ++++--.+-+|++++.+.+.
T Consensus        34 ~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSl  112 (349)
T KOG1443|consen   34 YFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSL  112 (349)
T ss_pred             HhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeee
Confidence            3444445554566667777766555554444333331111 111111111222234444 66777888899999999999


Q ss_pred             eeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          133 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       133 ~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      .++.-...++|..+++.++-=|+++|.-..-..+|..|+++..++..
T Consensus       113 YTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT  159 (349)
T KOG1443|consen  113 YTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST  159 (349)
T ss_pred             eeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence            99999999999999999999999999999999999999998876543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.40  E-value=0.77  Score=38.81  Aligned_cols=133  Identities=13%  Similarity=0.136  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCC--chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHH--HHhHHHh
Q 027773           37 GALMITAGCFSWSFFIILQAITLKAYP--AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVA--SVYSGII  112 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~  112 (219)
                      ....++.-+++-.+-.+..|.....++  ..+....+|.+...+.....-.. .-...+..+....+.|+-  +++.+- 
T Consensus        13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~-   90 (314)
T KOG1444|consen   13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGM-   90 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHH-
Confidence            344445555555556777788888776  33444558888777776655432 110112222211122221  222221 


Q ss_pred             hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                           .+.-..++++++.....++-...|+++++...+++|-+++...+.....+.+|......
T Consensus        91 -----i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~  149 (314)
T KOG1444|consen   91 -----LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF  149 (314)
T ss_pred             -----HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence                 22234788999999999999999999999999999999999999999999988877654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.22  E-value=0.092  Score=42.59  Aligned_cols=135  Identities=13%  Similarity=0.085  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-CC----------chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHh
Q 027773           40 MITAGCFSWSFFIILQAITLKA-YP----------AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVY  108 (219)
Q Consensus        40 ~~l~sa~~~a~~~i~~k~~~~~-~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (219)
                      ++.+--+|+=.|-+.+.|..|. +.          -.+.+.+.+|....+..=++..+...   ..  ......|.+.. 
T Consensus        17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~---~~--~D~t~~~~YaA-   90 (337)
T KOG1580|consen   17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK---TE--IDNTPTKMYAA-   90 (337)
T ss_pred             EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc---cc--ccCCcchHHHH-
Confidence            3444446777778888877653 32          12355666666666665443332221   11  11112343322 


Q ss_pred             HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773          109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  181 (219)
Q Consensus       109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~  181 (219)
                      ..+ +-.+++.--+.|+++.+=-..-+--...|+-.+++++++.+..-+|.++..+.+|+.|+.+..+.+++.
T Consensus        91 cs~-sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv  162 (337)
T KOG1580|consen   91 CSA-SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV  162 (337)
T ss_pred             HHH-HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence            222 445566667889999887777778889999999999999999999999999999999999998765443

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=93.52  E-value=0.39  Score=41.08  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=79.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH-hcCCcc-ceeeccchhHHHHHhHH
Q 027773           33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM-ERGKAS-IWAIHWDTKLVASVYSG  110 (219)
Q Consensus        33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~g  110 (219)
                      +-..|+++..+++++-+.+++-.||. |+..  ........-+-+-+..|..... .-++.. .....+...++...+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            45689999999999999999977776 4442  2222211111111112222111 110111 11111112344444455


Q ss_pred             HhhhHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHhC-------CcCchHHHHHHHHHHHhhhhhhccC
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILA-------EQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll~-------E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      ++= +++-..|-.++|+++.+.. +...-+.-+++.++--++.+       .+-....++|++++++|+.+.-+.-
T Consensus        81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG  155 (344)
T PF06379_consen   81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG  155 (344)
T ss_pred             HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence            533 6667888899999998653 33334445555555444433       2334567999999999999987643

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=92.92  E-value=5.6  Score=36.41  Aligned_cols=41  Identities=5%  Similarity=-0.075  Sum_probs=18.3

Q ss_pred             eccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          135 AFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       135 ~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      ......|+-+.++|.+.-.-.+.....+++++.+++..+..
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666667554332333333333333334444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=92.88  E-value=1.4  Score=36.90  Aligned_cols=65  Identities=14%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      +-..+-.+++.++..++++-.-++--...+|+.+++.-+++.+++..+|+|+..+.+|+.++...
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            55667788889999999999999999999999999999999999999999999999999988654

>PRK02237 hypothetical protein; Provisional

Probab=92.71  E-value=0.61  Score=33.05  Aligned_cols=45  Identities=16%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          134 AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       134 s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      +.+.-...+.++++.+.+-|++|+...++|++++++|+.+..+..
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            344445567778899999999999999999999999998876544

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=92.47  E-value=0.082  Score=44.31  Aligned_cols=133  Identities=9%  Similarity=0.013  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCc----cceee------ccchhHHHHHhHH
Q 027773           41 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKA----SIWAI------HWDTKLVASVYSG  110 (219)
Q Consensus        41 ~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~------~~~~~~~~l~~~g  110 (219)
                      |+++.+||+.+...+|-.-|+.. ....+.|=+.++.++..++.-++.+...    +...+      .....+. ..+.|
T Consensus         1 M~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~-~A~aG   78 (336)
T PF07168_consen    1 MVITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVL-FAMAG   78 (336)
T ss_pred             CeeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHH-HHHHh
Confidence            46788999999999998877653 2233455555555554443333322011    11111      1111222 23344


Q ss_pred             HhhhHHHHHHHHHHHhhcCceeeeeccc-hHHHHHHHHHHHHhCCcCc--hHHHHHHHHHHHhhhhhhc
Q 027773          111 IICSGLTYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMY--LGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~-l~Pv~~~l~~~lll~E~~~--~~~~lG~~li~~gv~l~~~  176 (219)
                      -+..-++..+..+++...|.+.+-++.. +.-++++++-|++ ..+.+  ..-+.|++++++++++...
T Consensus        79 GvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~  146 (336)
T PF07168_consen   79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAA  146 (336)
T ss_pred             hHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHH
Confidence            4455677888888888888877766553 2333344555433 44444  2456688888777776543

Transport is dependent on glucose and a proton gradient [].

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.45  E-value=2.7  Score=35.51  Aligned_cols=138  Identities=12%  Similarity=0.014  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-C-------CchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHh
Q 027773           37 GALMITAGCFSWSFFIILQAITLKA-Y-------PAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVY  108 (219)
Q Consensus        37 G~~~~l~sa~~~a~~~i~~k~~~~~-~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (219)
                      ..+++.+=-..+-.+-+++++++++ +       .++.-+.+.+-+++.++...+.-.  . . ..  .....-|+...+
T Consensus        15 L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~--~-k-~~--~~~~apl~~y~~   88 (327)
T KOG1581|consen   15 LVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKW--W-K-KE--LSGVAPLYKYSL   88 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhc--c-c-cc--CCCCCchhHHhH
Confidence            3333333334444566677666543 2       245566777777777666433321  1 1 11  111123555555


Q ss_pred             HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773          109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  181 (219)
Q Consensus       109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~  181 (219)
                      .++ ...++-.+.+.|+++++=-...+--....+-.++++.++.+.+.++..++-+.+|-.|+-+....+...
T Consensus        89 is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   89 ISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             HHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            555 567778888999999998888888888888899999999999999999999999999999988765544

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.94  E-value=0.37  Score=40.02  Aligned_cols=112  Identities=18%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeecc---c--hhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccc
Q 027773           64 AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHW---D--TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSP  138 (219)
Q Consensus        64 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~  138 (219)
                      .|.-++.++|++...+...+...... .+..+..+.   +  ...-.+-++.  .......+.++++++.+++..-.--.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k-~~~~ftfp~~~ldl~t~r~vlplsv--Vfi~mI~fnnlcL~yVgVaFYyvgRs  136 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVK-YPGLFTFPSLQLDLATARQVLPLSV--VFILMISFNNLCLKYVGVAFYYVGRS  136 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhh-ccceeccCcccccHHHHHhhcchhh--eeeeehhccceehhhcceEEEEeccc
Confidence            57888999998887776666544322 111111111   0  0111111111  11333456688999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          139 LCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       139 l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      +..+|++++.++++|++-+.....++.+|+.|..+-...+
T Consensus       137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE  176 (347)
T KOG1442|consen  137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE  176 (347)
T ss_pred             hhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence            9999999999999999999999999999999988776544

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=91.93  E-value=0.023  Score=46.25  Aligned_cols=135  Identities=19%  Similarity=0.226  Sum_probs=88.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773           30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS  109 (219)
Q Consensus        30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (219)
                      +.++...|....+.+.+.|-.|.++.+...  . +.++...-+. +|.+...+   .+.. ........ ...|. -+..
T Consensus       146 ~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLPqA-iGMv~~al---i~~~-~~~~~~~~-K~t~~-nii~  215 (288)
T COG4975         146 NPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILPQA-IGMVIGAL---ILGF-FKMEKRFN-KYTWL-NIIP  215 (288)
T ss_pred             ChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhHHH-HHHHHHHH---HHhh-cccccchH-HHHHH-HHhh
Confidence            345567899999999999999988665543  2 3343333222 33333222   2221 11111111 12333 3345


Q ss_pred             HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHhhhhhh
Q 027773          110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVV  175 (219)
Q Consensus       110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~----~lG~~li~~gv~l~~  175 (219)
                      |+ .-+++..++..+.++.+.+..=.+..+..+++.+-+++++||+-+..+    ++|.++++.|..+.-
T Consensus       216 G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg  284 (288)
T COG4975         216 GL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG  284 (288)
T ss_pred             HH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence            55 337778899999999999999999999999999999999999999776    567777777766554

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=91.51  E-value=1.4  Score=37.24  Aligned_cols=67  Identities=19%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             hhHHH-HHHHHHHHhhcCceeeeeccchHHHHH-HHHHHHHhCCcCc--hH----HHHHHHHHHHhhhhhhccCC
Q 027773          113 CSGLT-YYIQGIVMKDRGPVFVAAFSPLCMVIV-AIMSTIILAEQMY--LG----RIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       113 ~~~i~-~~l~~~al~~~~a~~~s~~~~l~Pv~~-~l~~~lll~E~~~--~~----~~lG~~li~~gv~l~~~~~~  179 (219)
                      .+.+. ..+.++|+++.+++.+.++.+..-... ++-+.++++|.-+  ..    ...|+.+++.|+++....|.
T Consensus       221 ~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  221 VTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            34444 455589999999999998887765554 5556667787643  32    46778888899998875443

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.26  E-value=1.1  Score=31.64  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             eccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          135 AFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       135 ~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      ...-...+.++++++.+-|++|+...++|+.++++|+.+..+..
T Consensus        62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            33445567788899999999999999999999999999887644

; GO: 0016020 membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=90.00  E-value=0.74  Score=32.53  Aligned_cols=59  Identities=14%  Similarity=0.194  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhhcCceeeeecc-chHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          117 TYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       117 ~~~l~~~al~~~~a~~~s~~~-~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      +-.+|++-+++.+-+.+.++. .+.-+++.+.+..+-.|...-..++|..++++|+.+.+
T Consensus        65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            356777888999988887764 56788899999887777788889999999999998764

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=89.87  E-value=0.47  Score=33.42  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=27.6

Q ss_pred             HHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773          144 VAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  175 (219)
Q Consensus       144 ~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~  175 (219)
                      -++++.+++||++++....|.++++.++++..
T Consensus        76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             eHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            35678889999999999999999999887654

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.58  E-value=1  Score=31.35  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773          143 IVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  176 (219)
Q Consensus       143 ~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~  176 (219)
                      +-+.++.+.++|++.+..+.|..++..|+++..+
T Consensus        82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            3356799999999999999999999999988764

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=85.91  E-value=0.22  Score=41.37  Aligned_cols=67  Identities=6%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhcCceeeeeccchHHH----HHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773          115 GLTYYIQGIVMKDRGPVFVAAFSPLCMV----IVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  181 (219)
Q Consensus       115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv----~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~  181 (219)
                      +++.++|.+.+++.+|+.-+++.+.--.    +-.++++++-...++...-+=-.+.+.++++..+.+...
T Consensus       119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~  189 (381)
T PF05297_consen  119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHDQR  189 (381)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4556677788999999887766544322    223334444445555554444456667777766655443

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=85.19  E-value=3.5  Score=29.04  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=36.6

Q ss_pred             eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          134 AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       134 s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      +...-...+.++++.++.=|.+|+...++|+++.++|+.+.....
T Consensus        62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p  106 (109)
T COG1742          62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP  106 (109)
T ss_pred             HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence            444555667788888888899999999999999999988776643

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=85.15  E-value=0.14  Score=42.00  Aligned_cols=131  Identities=14%  Similarity=0.060  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-CCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhh
Q 027773           36 KGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS  114 (219)
Q Consensus        36 ~G~~~~l~sa~~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  114 (219)
                      +|.++-++....-    .....+.++ .+.|...++.....-++.-.++.++...    ...    .-|...+..+++- 
T Consensus        22 LGQiLSL~~t~~a----~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~----~~~----~~~~hYilla~~D-   88 (336)
T KOG2766|consen   22 LGQILSLLITSTA----FTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK----YIK----AKWRHYILLAFVD-   88 (336)
T ss_pred             HHHHHHHHHHcch----hhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH----HHH----HHHHHhhheeEEe-
Confidence            4555555443322    222333344 2234555555554444555554443211    111    2355555565533 


Q ss_pred             HHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773          115 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  179 (219)
Q Consensus       115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~  179 (219)
                      +=+.++...|.|+.+.+.+.++..-..+...+++|++++-+-.+.++.|+++++.|+.++....-
T Consensus        89 VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV  153 (336)
T KOG2766|consen   89 VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV  153 (336)
T ss_pred             ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence            55566667899999999999999999999999999999999999999999999999998876543

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=84.84  E-value=25  Score=30.38  Aligned_cols=22  Identities=14%  Similarity=-0.106  Sum_probs=9.5

Q ss_pred             HHHHHhHHHhhhHHHHHHHHHH
Q 027773          103 LVASVYSGIICSGLTYYIQGIV  124 (219)
Q Consensus       103 ~~~l~~~g~~~~~i~~~l~~~a  124 (219)
                      ++.+...+.+...+++.+....
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~   83 (385)
T PF03547_consen   62 LWFIPVFAFIIFILGLLLGFLL   83 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3333434444445554444333

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.27
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.97

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.27  E-value=3.4e-12  Score=94.20  Aligned_cols=71  Identities=18%  Similarity=0.326  Sum_probs=55.0

Q ss_pred             hHHHhhhHHHHHHHHHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773          108 YSGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  178 (219)
Q Consensus       108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~  178 (219)
                      ..++++++++|++|.+++++++++++.++ ..+.|+++++++++++||++++.+++|+++|++|+++..+.+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            46677889999999999999999999998 899999999999999999999999999999999999987644

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.97  E-value=7.1e-09  Score=73.60  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=64.5

Q ss_pred             hHHHhhhHHHHHHHHHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773          108 YSGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  177 (219)
Q Consensus       108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~  177 (219)
                      ..++++.++++.++.+++++++.+.+.++ ..+.|+++++++++++||++++.+++|+++|++|+++....
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35566778999999999999999999888 89999999999999999999999999999999999998754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00