Citrus Sinensis ID: 027780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mftrlfgkpkqetnalTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQkatniddvdkTMDEINEQTENMKQIQEALStpigaaadfdeDELEAELEELEGAELEEqllqpattapaapvqvpagrqqarpvpqkqrTAEEDELAALQAEMAL
Flexible Loop (DISEMBL)
mftrlfgkpkqetnalttlDKLNETLEMLEKKEKvllkkasvevekakdyskaknkraaiqCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAstmkamqkatniddvdKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL
Low Complexity Region (SEG)
MFTRLFGKPKQETNALTTLDklnetlemlekkekvllkkasvevekAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGaaadfdedeleaeleelegaeleeqllqpattapaapvqvpaGRQQARPVPQKQRTaeedelaalqaemal
Disordered region (IsUnstruct)
*********************************************************AAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATT**************************************************************************************************************************
Disordered Region (DISOPRED)
MFTR********************************************************QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA**********NIDDVDKTMDEINEQTENMKQIQEAL**PIGAAADFDEDELEAELEE************************************************LQAEMAL
Disordered Region (DISEMBL)
MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASV***************AAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPAT****************************DELAALQAEMAL
Disordered Region (DISPRO)
*FT**FGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQP******************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTRLFGKPKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDxxxxxxxxxxxxxxxxxxxxxLSTPIGAAxxxxxxxxxxxxxxxxxxxxxxxxxQPATTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9SZE4	219	Vacuolar protein sorting-	yes	no	0.995	0.995	0.881	3e-89
O82197	213	Vacuolar protein sorting-	no	no	0.968	0.995	0.840	3e-88
Q9P7F7	222	Vacuolar-sorting protein	yes	no	0.986	0.972	0.343	2e-27
Q6BSH2	226	Vacuolar-sorting protein	yes	no	0.990	0.960	0.359	5e-21
Q86H98	215	Charged multivesicular bo	yes	no	0.662	0.674	0.365	1e-18
Q5XGW6	222	Charged multivesicular bo	N/A	no	0.936	0.923	0.403	2e-18
Q6GL11	222	Charged multivesicular bo	yes	no	0.936	0.923	0.403	4e-18
Q6IQ73	224	Charged multivesicular bo	yes	no	0.831	0.812	0.420	3e-17
Q5RBR3	219	Charged multivesicular bo	yes	no	0.844	0.844	0.34	1e-16
Q9NZZ3	219	Charged multivesicular bo	yes	no	0.844	0.844	0.34	1e-16

>sp|Q9SZE4|VP322_ARATH Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1

 Score =  327 bits (839), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/220 (88%), Positives = 202/220 (91%), Gaps = 2/220 (0%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           M  RLFGKPKQE NAL TLDKLNETLEMLEKKEKVLLKKA  EVEKAK+YS+AKNKRAAI
Sbjct: 1   MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNID
Sbjct: 61  QCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENMKQIQEAL+TP+GAAADFDEDEL AEL+ELE  ELE QLLQPATT
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATT 180

Query: 181 APAAP-VQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           AP  P V VPAGRQ ARPVPQK RTAEE+ELAALQAEMAL
Sbjct: 181 APPLPSVPVPAGRQPARPVPQK-RTAEEEELAALQAEMAL 219

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.
Arabidopsis thaliana (taxid: 3702)

>sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1

 Score =  324 bits (830), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/220 (84%), Positives = 194/220 (88%), Gaps = 8/220 (3%)

Query: 1   MF-TRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAA 59
           MF  RLFGKPKQET+ L TLDKLNETLEMLEKKE VLLKKA+ EVEKAK++S+AKNKRAA
Sbjct: 1   MFMNRLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAA 60

Query: 60  IQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNI 119
           IQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNI
Sbjct: 61  IQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNI 120

Query: 120 DDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPAT 179
           DDVDKTMDEINEQTENMKQIQEALS P G A DFDEDELEAEL+ELEGAELEEQLLQP  
Sbjct: 121 DDVDKTMDEINEQTENMKQIQEALSAPFG-ANDFDEDELEAELDELEGAELEEQLLQP-- 177

Query: 180 TAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
                P+ VP G + AR   QKQ TAEEDELAALQAEMAL
Sbjct: 178 ----VPIHVPQGNKPARAPAQKQPTAEEDELAALQAEMAL 213

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf7 PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 2   FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQ 61
           F R FG  + +     T+ +  E L + +KKE+VL ++ + + E A+  +   NKR A+ 
Sbjct: 4   FLRWFGGNRSKDTTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATT-NKRLALT 62

Query: 62  CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDD 121
            LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q+  + D 
Sbjct: 63  ALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADK 122

Query: 122 VDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLL---QPA 178
           VD+ MD+I +Q    ++I   +STP+G  A+ DEDEL  EL+EL+  EL+ ++L   +P 
Sbjct: 123 VDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQQMELDSKMLGAEKPP 182

Query: 179 TTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
              PA P  VP+  +    + + Q   EE+EL  LQAE +L
Sbjct: 183 VHTPAVPA-VPSQVKDLPSISKPQELDEEEELRKLQAEFSL 222

Required for the sorting and concentration of proteins resulting in the entry of these proteins into the invaginating vesicles of the multivesicular body (MVB).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNF7 PE=3 SV=2

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 1   MFTRLFGKPKQETNAL--TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRA 58
           M+  LFG  KQ+        + +L E ++ML KK   L  + + +   A+ Y    NK  
Sbjct: 1   MWNYLFGGNKQQKKEYPKKAIVELREHIQMLNKKRSHLESQIADQDALARKYITT-NKAL 59

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN 118
           A   LKRK+ YE  + ++ N    +  Q+  +EGA    ET+ A++ GA  MK +    +
Sbjct: 60  AKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYD 119

Query: 119 IDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPA 178
           +D V+ TMD+I EQ E   +I EA+S P+G     DEDEL+ EL  L+  E E +   PA
Sbjct: 120 VDKVENTMDDIREQVELADEISEAISRPVGTEF-VDEDELDEELAMLQEEEKEHKQQTPA 178

Query: 179 TTAPAAPVQVPAGRQQARPVPQKQRTA---EEDE----LAALQAEMAL 219
             AP A V  P       P   K + A   E+DE    L ALQAEM L
Sbjct: 179 QKAPVAKVSAPEEEMPDFPTVNKNKPAASTEDDEDEEALKALQAEMGL 226

Required for the sorting and concentration of proteins resulting in the entry of these proteins into the invaginating vesicles of the multivesicular body (MVB). Also required for the proteolytic cleavage of the transcription factor RIM101 in response to alkaline ambient pH.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q86H98|CHMP4_DICDI Charged multivesicular body protein 4 OS=Dictyostelium discoideum GN=chmp4 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 85/145 (58%)

Query: 4   RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCL 63
           +LFGKPK + +   T+ KL  TL+MLEK++  L  K   E EKAK     K KR A+ CL
Sbjct: 2   KLFGKPKPKQDTQETIGKLRLTLDMLEKRQTFLQDKLEKEQEKAKVLVSQKRKREALLCL 61

Query: 64  KRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVD 123
           K++  ++ ++ +L      ++ Q+  LE AK   E ++++R GA +++ +     ID VD
Sbjct: 62  KKRNNFQNEVTKLQGSYDTLNQQIFALENAKMNMEIMNSMRDGARSLRELHGHLTIDKVD 121

Query: 124 KTMDEINEQTENMKQIQEALSTPIG 148
             ++EI EQ E  ++I  A+S P+G
Sbjct: 122 DVIEEIQEQMEIHEEISNAISQPLG 146

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 8/213 (3%)

Query: 1   MFTRLFG---KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKR 57
           +  +LFG   K  +  +    + KL +T EML KK++ L KK   E+  AK +   KNKR
Sbjct: 3   LIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHG-TKNKR 61

Query: 58  AAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKAT 117
           AA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     
Sbjct: 62  AALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNM 121

Query: 118 NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLL-- 175
           +I+ VD+ M +I +Q E  ++I +A+S P+G   DFDEDEL AELEELE  EL++ LL  
Sbjct: 122 DIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEV 181

Query: 176 QPATTAPAAPVQVPAGRQQARPVPQKQRTAEED 208
           Q   T P     VPA    A+PV +KQ   ++D
Sbjct: 182 QGPETVPLP--NVPAASLPAKPVKKKQEEDDDD 212

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 8/213 (3%)

Query: 1   MFTRLFG---KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKR 57
           +  +LFG   K  +  +    + KL +T EML KK++ L KK   E+  AK +   KNKR
Sbjct: 3   LIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHG-TKNKR 61

Query: 58  AAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKAT 117
           AA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     
Sbjct: 62  AALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNM 121

Query: 118 NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLL-- 175
           +I+ VD+ M +I +Q E  ++I +A+S P+G   DFDEDEL AELEELE  EL++ LL  
Sbjct: 122 DIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDELMAELEELEQEELDKNLLEV 181

Query: 176 QPATTAPAAPVQVPAGRQQARPVPQKQRTAEED 208
           Q   T P     VPA    A+PV +KQ   ++D
Sbjct: 182 QGPETVPLP--NVPAAVLPAKPVKKKQEEDDDD 212

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 106/188 (56%), Gaps = 6/188 (3%)

Query: 19  LDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGN 78
           + KL ET EML KK+  L KK   E+  AK  +  KNKRAA+Q LKRK+ YE+Q+ Q+  
Sbjct: 24  IQKLRETEEMLAKKQDFLEKKIDAELLIAK-KNGTKNKRAALQALKRKKRYEKQLAQIDG 82

Query: 79  FQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ 138
               I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++
Sbjct: 83  TLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQE 142

Query: 139 IQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPV 198
           I +A+S P+G   +FDEDEL AELEELE  EL++ LLQ      + P  VP     + P+
Sbjct: 143 ISDAISRPVGFGEEFDEDELMAELEELEQEELDKDLLQ-----ISGPEDVPLPNVPSNPL 197

Query: 199 PQKQRTAE 206
           P+K   A+
Sbjct: 198 PKKTAVAQ 205

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 15/200 (7%)

Query: 2   FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN 55
             RLFGK      P   T+ + T+D   E+++    +    L K   +++K ++   AKN
Sbjct: 1   MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKN 59

Query: 56  --KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
             K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ G   MK  
Sbjct: 60  MVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKA 119

Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL--- 170
            K   ID ++   D++ +  E+  +IQEALS   G   + DED+LEAEL+ L G EL   
Sbjct: 120 YKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYG-TPELDEDDLEAELDAL-GDELLAD 177

Query: 171 -EEQLLQPATTAPAAPVQVP 189
            +   L  A +APA P  VP
Sbjct: 178 EDSSYLDEAASAPAIPEGVP 197

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Pongo abelii (taxid: 9601)

>sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 15/200 (7%)

Query: 2   FTRLFGK------PKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN 55
             RLFGK      P   T+ + T+D   E+++    +    L K   +++K ++   AKN
Sbjct: 1   MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKN 59

Query: 56  --KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
             K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ G   MK  
Sbjct: 60  MVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKA 119

Query: 114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL--- 170
            K   ID ++   D++ +  E+  +IQEALS   G   + DED+LEAEL+ L G EL   
Sbjct: 120 YKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYG-TPELDEDDLEAELDAL-GDELLAD 177

Query: 171 -EEQLLQPATTAPAAPVQVP 189
            +   L  A +APA P  VP
Sbjct: 178 EDSSYLDEAASAPAIPEGVP 197

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
449446558	218	PREDICTED: vacuolar protein sorting-asso	0.995	1.0	0.881	1e-96
388520377	218	unknown [Lotus japonicus]	0.995	1.0	0.913	2e-92
225429420	216	PREDICTED: vacuolar protein sorting-asso	0.986	1.0	0.904	2e-91
388501196	220	unknown [Medicago truncatula]	0.995	0.990	0.877	1e-88
255546239	218	Charged multivesicular body protein 4b,	0.995	1.0	0.922	2e-88
15233464	219	vacuolar protein sorting-associated prot	0.995	0.995	0.881	2e-87
116791024	217	unknown [Picea sitchensis] gi|224284921|	0.986	0.995	0.831	4e-87
21594892	218	copia-like retroelement pol polyprotein	0.990	0.995	0.881	7e-87
15224854	213	vacuolar protein sorting-associated prot	0.968	0.995	0.840	2e-86
356523801	218	PREDICTED: vacuolar protein sorting-asso	0.995	1.0	0.894	2e-85

>gi|449446558|ref|XP_004141038.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Cucumis sativus] gi|449487999|ref|XP_004157906.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2-like [Cucumis sativus]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/219 (88%), Positives = 204/219 (93%), Gaps = 1/219 (0%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           MF RLFGKPKQE NAL TL+KL+ETLEMLEKKE VL+KKA+ EVE+AK++++ KNKRAAI
Sbjct: 1   MFNRLFGKPKQEANALATLEKLSETLEMLEKKENVLVKKAAAEVERAKEFTRGKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNID
Sbjct: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENMKQIQEALS PIGAAADFDEDELEAELE+LE AELEEQLLQPA+T
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALSAPIGAAADFDEDELEAELEDLESAELEEQLLQPAST 180

Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           APAAPV VP GR  ARP PQK RTAEEDELAALQAEMAL
Sbjct: 181 APAAPVSVPGGRVPARPAPQK-RTAEEDELAALQAEMAL 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520377|gb|AFK48250.1| unknown [Lotus japonicus]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/219 (91%), Positives = 205/219 (93%), Gaps = 1/219 (0%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           MFTR+FGKPKQE NAL TLDKLNETL+MLEKKEKVL+KKAS EVEKAKD++KAKNKRAAI
Sbjct: 1   MFTRIFGKPKQEANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNID
Sbjct: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENMKQIQEALS PIGAAADFDEDELEAELEELEGAELEEQLLQPATT
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALSAPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180

Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           APAA V VPAGRQ  RPV  K  T EEDELAALQAEMAL
Sbjct: 181 APAASVHVPAGRQPTRPVSAKT-TPEEDELAALQAEMAL 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429420|ref|XP_002275998.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Vitis vinifera] gi|147832595|emb|CAN68229.1| hypothetical protein VITISV_026042 [Vitis vinifera] gi|296081601|emb|CBI20606.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/219 (90%), Positives = 208/219 (94%), Gaps = 3/219 (1%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           MFTRLFGKPKQE NALTTLDKLNETLEMLEKKE VLLKKA+ EVEKAK++++AKNKRAAI
Sbjct: 1   MFTRLFGKPKQEANALTTLDKLNETLEMLEKKEGVLLKKAAAEVEKAKEFTRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYEQQIEQLGNFQLRIHDQMI+LEGAKATTETVDALRTGAS MKAMQKATNID
Sbjct: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMILLEGAKATTETVDALRTGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENMKQIQEAL+TPIGAAADFDEDELEAELEELEGAELEEQLLQPATT
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALATPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180

Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           APAAP  +PAGR  ARP PQ+  TAE+DELAALQAEMAL
Sbjct: 181 APAAP--IPAGRVPARPAPQRN-TAEDDELAALQAEMAL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501196|gb|AFK38664.1| unknown [Medicago truncatula]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/221 (87%), Positives = 203/221 (91%), Gaps = 3/221 (1%)

Query: 1   MFTRLFGKPKQET--NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRA 58
           MFTR+FGKPKQ+T  NAL TLDKLNETLEMLEKKE VLLKKA+ EVEKAK+Y+K KNK+A
Sbjct: 1   MFTRVFGKPKQDTSSNALATLDKLNETLEMLEKKENVLLKKAAAEVEKAKEYTKRKNKKA 60

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN 118
           AIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA+TMKAMQKATN
Sbjct: 61  AIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAATMKAMQKATN 120

Query: 119 IDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPA 178
           IDDVDKTMDEINEQTENMKQIQEALS PIGAAADFDEDELEAELEELE AELEEQLLQP 
Sbjct: 121 IDDVDKTMDEINEQTENMKQIQEALSAPIGAAADFDEDELEAELEELESAELEEQLLQPT 180

Query: 179 TTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
            TAPA  +QVPAGRQ ARP P K  T EEDELAALQAEMAL
Sbjct: 181 FTAPAPSMQVPAGRQPARPAPAKP-TPEEDELAALQAEMAL 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546239|ref|XP_002514179.1| Charged multivesicular body protein 4b, putative [Ricinus communis] gi|223546635|gb|EEF48133.1| Charged multivesicular body protein 4b, putative [Ricinus communis]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 202/219 (92%), Positives = 208/219 (94%), Gaps = 1/219 (0%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           MF RLFGKPKQETNALTTLDKLNETLEMLEKKEKVL KKA  EVE+AK++++ KNKRAAI
Sbjct: 1   MFNRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLSKKAIAEVERAKEFTRTKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA+ MKAMQKATNID
Sbjct: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180

Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           APAAPVQVPAGRQ  RP  QKQ TAEEDELAALQAEMAL
Sbjct: 181 APAAPVQVPAGRQPNRPAAQKQ-TAEEDELAALQAEMAL 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233464|ref|NP_194645.1| vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] gi|145334175|ref|NP_001078468.1| vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] gi|75213588|sp|Q9SZE4.1|VP322_ARATH RecName: Full=Vacuolar protein sorting-associated protein 32 homolog 2; Short=AtVPS32-2; AltName: Full=Charged multivesicular body protein 4 homolog 2; AltName: Full=ESCRT-III complex subunit VPS32 homolog 2 gi|4972062|emb|CAB43930.1| putative protein [Arabidopsis thaliana] gi|7269814|emb|CAB79674.1| putative protein [Arabidopsis thaliana] gi|14596131|gb|AAK68793.1| putative protein [Arabidopsis thaliana] gi|18377478|gb|AAL66905.1| putative protein [Arabidopsis thaliana] gi|332660193|gb|AEE85593.1| vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] gi|332660195|gb|AEE85595.1| vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 194/220 (88%), Positives = 202/220 (91%), Gaps = 2/220 (0%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           M  RLFGKPKQE NAL TLDKLNETLEMLEKKEKVLLKKA  EVEKAK+YS+AKNKRAAI
Sbjct: 1   MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNID
Sbjct: 61  QCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENMKQIQEAL+TP+GAAADFDEDEL AEL+ELE  ELE QLLQPATT
Sbjct: 121 DVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATT 180

Query: 181 APAAP-VQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           AP  P V VPAGRQ ARPVPQK RTAEE+ELAALQAEMAL
Sbjct: 181 APPLPSVPVPAGRQPARPVPQK-RTAEEEELAALQAEMAL 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791024|gb|ABK25827.1| unknown [Picea sitchensis] gi|224284921|gb|ACN40190.1| unknown [Picea sitchensis] gi|224286294|gb|ACN40855.1| unknown [Picea sitchensis]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 182/219 (83%), Positives = 197/219 (89%), Gaps = 3/219 (1%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           MF+RLFG+PK+E N ++TLDKLNETLEMLEKKEKVL KK   EVEKA+D+++AKNK+AAI
Sbjct: 2   MFSRLFGRPKEEANPISTLDKLNETLEMLEKKEKVLQKKIQAEVEKARDFTRAKNKKAAI 61

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYE QIEQLGN+QLRIHDQMIMLEGAKATTETV ALRTGAS MKAMQKATNID
Sbjct: 62  QCLKRKRLYEVQIEQLGNYQLRIHDQMIMLEGAKATTETVAALRTGASAMKAMQKATNID 121

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENMKQIQEAL+TPIGAAADFDEDELEAELEELEGA+LEEQLLQPA T
Sbjct: 122 DVDKTMDEINEQTENMKQIQEALATPIGAAADFDEDELEAELEELEGADLEEQLLQPAVT 181

Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           APA     PA +Q ARP  Q+ R  EEDELAALQAEMAL
Sbjct: 182 APAVQY-TPASQQLARPTRQQAR--EEDELAALQAEMAL 217

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594892|gb|AAM66053.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 193/219 (88%), Positives = 201/219 (91%), Gaps = 2/219 (0%)

Query: 2   FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQ 61
             RLFGKPKQE NAL TLDKLNETLEMLEKKEKVLLKKA  EVEKAK+YS+AKNKRAAIQ
Sbjct: 1   MNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQ 60

Query: 62  CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDD 121
           CLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDD
Sbjct: 61  CLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDD 120

Query: 122 VDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTA 181
           VDKTMDEINEQTENMKQIQEAL+TP+GAAADFDEDEL AEL+ELE  ELE QLLQPATTA
Sbjct: 121 VDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATTA 180

Query: 182 PAAP-VQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           P  P V VPAGRQ ARPVPQK RTAEE+ELAALQAEMAL
Sbjct: 181 PPLPSVPVPAGRQPARPVPQK-RTAEEEELAALQAEMAL 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224854|ref|NP_179573.1| vacuolar protein sorting-associated protein 32-1 [Arabidopsis thaliana] gi|75100551|sp|O82197.1|VP321_ARATH RecName: Full=Vacuolar protein sorting-associated protein 32 homolog 1; Short=AtVPS32-1; AltName: Full=Charged multivesicular body protein 4 homolog 1; AltName: Full=ESCRT-III complex subunit VPS32 homolog 1 gi|3687235|gb|AAC62133.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana] gi|15028177|gb|AAK76585.1| putative copia retroelement pol polyprotein [Arabidopsis thaliana] gi|19310843|gb|AAL85152.1| putative copia retroelement pol polyprotein [Arabidopsis thaliana] gi|330251837|gb|AEC06931.1| vacuolar protein sorting-associated protein 32-1 [Arabidopsis thaliana]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/220 (84%), Positives = 194/220 (88%), Gaps = 8/220 (3%)

Query: 1   MF-TRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAA 59
           MF  RLFGKPKQET+ L TLDKLNETLEMLEKKE VLLKKA+ EVEKAK++S+AKNKRAA
Sbjct: 1   MFMNRLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAA 60

Query: 60  IQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNI 119
           IQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNI
Sbjct: 61  IQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNI 120

Query: 120 DDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPAT 179
           DDVDKTMDEINEQTENMKQIQEALS P G A DFDEDELEAEL+ELEGAELEEQLLQP  
Sbjct: 121 DDVDKTMDEINEQTENMKQIQEALSAPFG-ANDFDEDELEAELDELEGAELEEQLLQP-- 177

Query: 180 TAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
                P+ VP G + AR   QKQ TAEEDELAALQAEMAL
Sbjct: 178 ----VPIHVPQGNKPARAPAQKQPTAEEDELAALQAEMAL 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523801|ref|XP_003530523.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog 1-like [Glycine max]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/219 (89%), Positives = 206/219 (94%), Gaps = 1/219 (0%)

Query: 1   MFTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAI 60
           MFTR+FGKPKQE N LTTLDKLNETLEMLEKKEKVLLKKA+ EVEKAK++++AKNKRAAI
Sbjct: 1   MFTRIFGKPKQEANTLTTLDKLNETLEMLEKKEKVLLKKAAAEVEKAKEFTRAKNKRAAI 60

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
           QCLKRKRLYEQ +EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA+ M+AMQKATNID
Sbjct: 61  QCLKRKRLYEQHVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMRAMQKATNID 120

Query: 121 DVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180
           DVDKTMDEINEQTENM+QIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT
Sbjct: 121 DVDKTMDEINEQTENMRQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATT 180

Query: 181 APAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEMAL 219
           APAAPV VPAGRQ   PV  K  TAEEDELAALQAEMAL
Sbjct: 181 APAAPVHVPAGRQPTHPVSSK-LTAEEDELAALQAEMAL 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2119956	219	SNF7.1 [Arabidopsis thaliana (	0.675	0.675	0.743	1.6e-55
TAIR|locus:2051970	213	SNF7.2 [Arabidopsis thaliana (	0.675	0.694	0.744	1.9e-51
UNIPROTKB|Q14D22	265	CHMP4A "Charged multivesicular	0.461	0.381	0.382	2.2e-15
UNIPROTKB|Q9BY43	222	CHMP4A "Charged multivesicular	0.461	0.454	0.382	2.2e-15
WB|WBGene00016961	221	vps-32.1 [Caenorhabditis elega	0.433	0.429	0.378	1.2e-14
CGD|CAL0005125	226	SNF7 [Candida albicans (taxid:	0.465	0.451	0.382	4.9e-14
UNIPROTKB|Q5ABD0	226	SNF7 "Vacuolar-sorting protein	0.465	0.451	0.382	4.9e-14
ZFIN|ZDB-GENE-040426-906	220	zgc:56112 "zgc:56112" [Danio r	0.433	0.431	0.421	7.9e-14
POMBASE|SPAC1142.07c	222	vps32 "ESCRT III complex subun	0.429	0.423	0.351	1.3e-13
ZFIN|ZDB-GENE-040426-2812	224	chmp4b "chromatin modifying pr	0.433	0.424	0.410	1.3e-13

TAIR|locus:2119956 SNF7.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 110/148 (74%), Positives = 116/148 (78%)

Query:     1 MFTRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAI 60
             M  RLFGKPKQE NAL TLD                          AK+YS+AKNKRAAI
Sbjct:     1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAI 60

Query:    61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNID 120
             QCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNID
Sbjct:    61 QCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNID 120

Query:   121 DVDKTMDEINEQTENMKQIQEALSTPIG 148
             DVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:   121 DVDKTMDEINEQTENMKQIQEALATPMG 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2051970 SNF7.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 111/149 (74%), Positives = 116/149 (77%)

Query:     1 MF-TRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAA 59
             MF  RLFGKPKQET+ L TLD                          AK++S+AKNKRAA
Sbjct:     1 MFMNRLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAA 60

Query:    60 IQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNI 119
             IQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNI
Sbjct:    61 IQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNI 120

Query:   120 DDVDKTMDEINEQTENMKQIQEALSTPIG 148
             DDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:   121 DDVDKTMDEINEQTENMKQIQEALSAPFG 149

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q14D22 CHMP4A "Charged multivesicular body protein 4a" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 39/102 (38%), Positives = 57/102 (55%)

Query:    47 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTG 106
             AK Y   KNKRAA+Q L+RK+ +EQQ+ Q       +  Q   +E A    E +  +   
Sbjct:    94 AKKYG-TKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELA 152

Query:   107 ASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
             A +MK   +  +ID VD+ M +I EQ E  +QI +A+S P+G
Sbjct:   153 AQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 194

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9BY43 CHMP4A "Charged multivesicular body protein 4a" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 39/102 (38%), Positives = 57/102 (55%)

Query:    47 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTG 106
             AK Y   KNKRAA+Q L+RK+ +EQQ+ Q       +  Q   +E A    E +  +   
Sbjct:    51 AKKYG-TKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELA 109

Query:   107 ASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
             A +MK   +  +ID VD+ M +I EQ E  +QI +A+S P+G
Sbjct:   110 AQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 151

GO:0008289 "lipid binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

WB|WBGene00016961 vps-32.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 167 (63.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 36/95 (37%), Positives = 52/95 (54%)

Query:    54 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
             KNKR A+QCL RKR +E+Q+  +      I  Q   LE A    E ++ + T +  +KA 
Sbjct:    57 KNKRMALQCLNRKRNFEKQLAHIDGVLSTIGYQREALENASTNAEVLNVMGTASKALKAA 116

Query:   114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
                 +ID V   M++I EQ E   +I EA+S P+G
Sbjct:   117 HNNMDIDQVHDLMEDIAEQQEVANEIAEAISNPVG 151

GO:0015031 "protein transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

CGD|CAL0005125 SNF7 [Candida albicans (taxid:5476)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 39/102 (38%), Positives = 58/102 (56%)

Query:    47 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTG 106
             A+ Y  +K    A   LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ G
Sbjct:    49 ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQG 108

Query:   107 ASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
             A  MK +    ++D V+ TMDEI EQ E   +I EA+S P+G
Sbjct:   109 AKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150

GO:0003674 "molecular_function" evidence=ND

GO:0016485 "protein processing" evidence=IGI;IMP

GO:0006623 "protein targeting to vacuole" evidence=ISS;IMP

GO:0000815 "ESCRT III complex" evidence=ISS;IDA

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0036178 "filamentous growth of a population of unicellular organisms in response to neutral pH" evidence=IMP

GO:0007165 "signal transduction" evidence=IGI

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0036177 "filamentous growth of a population of unicellular organisms in response to pH" evidence=IMP

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0071285 "cellular response to lithium ion" evidence=IMP

GO:0071467 "cellular response to pH" evidence=IGI;IMP

GO:0035690 "cellular response to drug" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0070676 "intralumenal vesicle formation" evidence=IEA

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0071454 "cellular response to anoxia" evidence=IEA

UNIPROTKB|Q5ABD0 SNF7 "Vacuolar-sorting protein SNF7" [Candida albicans SC5314 (taxid:237561)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 39/102 (38%), Positives = 58/102 (56%)

Query:    47 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTG 106
             A+ Y  +K    A   LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ G
Sbjct:    49 ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQG 108

Query:   107 ASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
             A  MK +    ++D V+ TMDEI EQ E   +I EA+S P+G
Sbjct:   109 AKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150

GO:0000815 "ESCRT III complex" evidence=ISS;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0006623 "protein targeting to vacuole" evidence=ISS;IMP

GO:0007165 "signal transduction" evidence=IGI

GO:0009405 "pathogenesis" evidence=IMP

GO:0016485 "protein processing" evidence=IGI;IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0035690 "cellular response to drug" evidence=IMP

GO:0036177 "filamentous growth of a population of unicellular organisms in response to pH" evidence=IMP

GO:0036178 "filamentous growth of a population of unicellular organisms in response to neutral pH" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0071285 "cellular response to lithium ion" evidence=IMP

GO:0071467 "cellular response to pH" evidence=IGI;IMP

ZFIN|ZDB-GENE-040426-906 zgc:56112 "zgc:56112" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 40/95 (42%), Positives = 55/95 (57%)

Query:    54 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
             KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA 
Sbjct:    58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAA 117

Query:   114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
                 +ID VD+ M +I EQ E  ++I +A+S P+G
Sbjct:   118 HDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

POMBASE|SPAC1142.07c vps32 "ESCRT III complex subunit Vps32" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/94 (35%), Positives = 58/94 (61%)

Query:    55 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQ 114
             NKR A+  LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q
Sbjct:    56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQ 115

Query:   115 KATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
             +  + D VD+ MD+I +Q    ++I   +STP+G
Sbjct:   116 RGMDADKVDQIMDKIRDQQTISEEISTMISTPVG 149

GO:0000815 "ESCRT III complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0006900 "membrane budding" evidence=IC

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IMP

GO:0045324 "late endosome to vacuole transport" evidence=IMP

ZFIN|ZDB-GENE-040426-2812 chmp4b "chromatin modifying protein 4B" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/95 (41%), Positives = 54/95 (56%)

Query:    54 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAM 113
             KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK  
Sbjct:    58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTA 117

Query:   114 QKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 148
              +  +ID VD  M +I EQ E  ++I +A+S P+G
Sbjct:   118 HENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82197	VP321_ARATH	No assigned EC number	0.8409	0.9680	0.9953	no	no
Q6IQ73	CHM4C_DANRE	No assigned EC number	0.4202	0.8310	0.8125	yes	no
Q6GL11	CHM4B_XENTR	No assigned EC number	0.4037	0.9360	0.9234	yes	no
Q9D8B3	CHM4B_MOUSE	No assigned EC number	0.4010	0.8767	0.8571	yes	no
Q9P7F7	SNF7_SCHPO	No assigned EC number	0.3438	0.9863	0.9729	yes	no
Q6BSH2	SNF7_DEBHA	No assigned EC number	0.3596	0.9908	0.9601	yes	no
Q5RBR3	CHMP5_PONAB	No assigned EC number	0.34	0.8447	0.8447	yes	no
P0CR54	SNF7_CRYNJ	No assigned EC number	0.3242	0.9908	0.9863	yes	no
Q9SZE4	VP322_ARATH	No assigned EC number	0.8818	0.9954	0.9954	yes	no
Q9NZZ3	CHMP5_HUMAN	No assigned EC number	0.34	0.8447	0.8447	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
pfam03357	169	pfam03357, Snf7, Snf7	7e-38
PTZ00464	211	PTZ00464, PTZ00464, SNF-7-like protein; Provisiona	2e-16
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	3e-12

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  129 bits (326), Expect = 7e-38
 Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 4/165 (2%)

Query: 21  KLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQ 80
            L + +  L+KK++ L KK      + K  +K  NK AA+  LK+K+ YE+Q++QL    
Sbjct: 5   SLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDGQL 64

Query: 81  LRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQ 140
             +    + +E AK   E ++A++ GA  MKAM K  +ID +D  MDEI +Q E   +I 
Sbjct: 65  ANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEIS 124

Query: 141 EALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAP 185
           E LS  +  A + DE+EL+AEL+ L     +E   +     P+AP
Sbjct: 125 EMLSDTLDDADEEDEEELDAELDALL----DEIGDEELVELPSAP 165

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 4   RLFGKPKQE-----TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRA 58
           RLFGK  +       +A   +   +E ++    K    L K   ++++ +  +++++K+ 
Sbjct: 3   RLFGKKNKTPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQR 62

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN 118
           A+Q L++KR+Y+ Q + +   Q  +       E  K T   VDA++  A T+K   K  N
Sbjct: 63  AMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLN 122

Query: 119 IDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEE----QL 174
           +D V+   DE+ +  E+ ++IQE +        D DEDE+  EL+ L+    +E     L
Sbjct: 123 VDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEADASYL 182

Query: 175 LQPATTAPAAPVQVPAGRQQ 194
                        VP   +Q
Sbjct: 183 ADALAVPGTKLPDVPTDEKQ 202

Length = 211

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 62.8 bits (152), Expect = 3e-12
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 2/169 (1%)

Query: 8   KPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKR 67
           K K        + K  E ++ LEKK+  + KK      +AK   +      A   LKRK+
Sbjct: 18  KKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKK 77

Query: 68  LYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMD 127
           LYEQ+IE + N +L + D MI LE        V+AL   A+T K +    N   V+K +D
Sbjct: 78  LYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIID 137

Query: 128 EINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQ 176
            I E  +  ++I +ALS       + D+DE++ EL+ L+   +EE+LL+
Sbjct: 138 TIQENKDIQEEINQALS--FNLLNNVDDDEIDKELDLLKEQTMEEKLLK 184

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
KOG1656	221	consensus Protein involved in glucose derepression	100.0
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	100.0
PTZ00464	211	SNF-7-like protein; Provisional	100.0
KOG2910	209	consensus Uncharacterized conserved protein predic	100.0
KOG1655	218	consensus Protein involved in vacuolar protein sor	100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.96
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.94
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	99.89
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	99.85
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	99.8
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	99.23
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	98.29
KOG1655	218	consensus Protein involved in vacuolar protein sor	98.27
PRK10698	222	phage shock protein PspA; Provisional	98.14
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	98.04
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	98.02
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	97.8
KOG1656	221	consensus Protein involved in glucose derepression	97.74
PTZ00464	211	SNF-7-like protein; Provisional	97.69
COG5491	204	VPS24 Conserved protein implicated in secretion [C	97.12
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	97.03
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	95.59
COG5491	204	VPS24 Conserved protein implicated in secretion [C	94.34
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	94.33
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	93.8
KOG2911	439	consensus Uncharacterized conserved protein [Funct	93.39
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	90.26
PRK04778	569	septation ring formation regulator EzrA; Provision	90.18
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	86.98
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	86.69
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	82.92

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-53  Score=342.66  Aligned_cols=215  Identities=45%  Similarity=0.621  Sum_probs=195.4

Q ss_pred             CcccccCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 027780            1 MFTRLFGKPK--QETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEK-AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLG   77 (219)
Q Consensus         1 m~~~lFGk~~--~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~-ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~   77 (219)
                      ||+||||+++  .++++.++|.+||++++.|.|+.++|+++|..+... |++|. .+||+.|++||||||+||+||.++.
T Consensus         3 ~~~~~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~-tkNKR~AlqaLkrKK~~E~qL~qid   81 (221)
T KOG1656|consen    3 MFSRLFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYG-TKNKRMALQALKRKKRYEKQLAQID   81 (221)
T ss_pred             HHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            6999999874  457999999999999999999999999999999777 88874 6799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHH
Q 027780           78 NFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDE  157 (219)
Q Consensus        78 ~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedE  157 (219)
                      |.+.+|+.++..||+|.+|.+|+.+|+.|++|||.+|+.||||+|+++||+|.|+.+.++||+++||.|+|.+.++||||
T Consensus        82 G~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDE  161 (221)
T KOG1656|consen   82 GTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDE  161 (221)
T ss_pred             hHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877899999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCCchHHHHHHHHHHh
Q 027780          158 LEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQAEM  217 (219)
Q Consensus       158 Le~EL~~L~~e~lde~~~~~~~~~p~~~~~~p~~~~~~~~~~~~~~~~ee~el~~L~~~~  217 (219)
                      |.+||++|++++++.+++++.+ +|++.|+||+..+|+.|.+.+..+++|++|++|+++.
T Consensus       162 L~~ELdeLeqeeld~~ll~~~~-p~v~LP~vPs~~lPa~~~~~~~a~E~d~~l~~l~~w~  220 (221)
T KOG1656|consen  162 LMAELDELEQEELDKELLDIRA-PPVPLPDVPSIALPAKPASRPKAEEDDDDLKELASWA  220 (221)
T ss_pred             HHHHHHHHHHHHHHHHHhccCC-CCCCCCCCCccccCcccccCCCcchhhhHHHHHHHhc
Confidence            9999999999999999999874 4555678999899987543332345566699999875

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=100.00  E-value=3.5e-43  Score=288.91  Aligned_cols=173  Identities=34%  Similarity=0.438  Sum_probs=164.8

Q ss_pred             cccccCCCCCCc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 027780            2 FTRLFGKPKQET-----------NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYE   70 (219)
Q Consensus         2 ~~~lFGk~~~~~-----------~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e   70 (219)
                      |++||||+++.|           +|.++|.+||++++.|++|..+|+.+|+.+...||++++.|++++|+.||||||+||
T Consensus         1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E   80 (191)
T PTZ00446          1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYE   80 (191)
T ss_pred             CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            567999987666           699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 027780           71 QQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAA  150 (219)
Q Consensus        71 ~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~  150 (219)
                      +++++++++++||++++++||++++|.+||.||+.|+++||.+|+.|++|+|+++||+++|+++.++||+++|+++++  
T Consensus        81 ~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~--  158 (191)
T PTZ00446         81 QEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLL--  158 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998753  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhcC
Q 027780          151 ADFDEDELEAELEELEGAELEEQLLQ  176 (219)
Q Consensus       151 ~~~DedELe~EL~~L~~e~lde~~~~  176 (219)
                      +++||+||++||++|+++.+++.++.
T Consensus       159 ~~~DEdELe~ELe~Le~e~l~~~ll~  184 (191)
T PTZ00446        159 NNVDDDEIDKELDLLKEQTMEEKLLK  184 (191)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999998754

>PTZ00464 SNF-7-like protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=278.27  Aligned_cols=190  Identities=26%  Similarity=0.377  Sum_probs=163.1

Q ss_pred             cccccCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHHHHH
Q 027780            2 FTRLFGKPK--QETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAK-------NKRAAIQCLKRKRLYEQQ   72 (219)
Q Consensus         2 ~~~lFGk~~--~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~-------~k~~A~~~Lk~KK~~e~~   72 (219)
                      |+||||+++  |++++..+|.+|+.++..|++||..    |+.++..||++++.+       +|++|+.|||+||+||++
T Consensus         1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~kKi~~----ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~q   76 (211)
T PTZ00464          1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDARINK----IDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQ   76 (211)
T ss_pred             CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            689999865  4579999999999999999999854    677778888887543       489999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 027780           73 IEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAAD  152 (219)
Q Consensus        73 l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~  152 (219)
                      ++++.++++||+++.++|+++++|..||.||+.|+++||.+|+.|++|+|+++||+|+|+++.++||+++|+++++.+++
T Consensus        77 l~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~  156 (211)
T PTZ00464         77 QDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDD  156 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876568


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 027780          153 FDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVP  199 (219)
Q Consensus       153 ~DedELe~EL~~L~~e~lde~~~~~~~~~p~~~~~~p~~~~~~~~~~  199 (219)
                      +||+||++||++|+.+...+..++   .. ...|+||++.+|.+|..
T Consensus       157 ~DEdELe~ELe~Le~e~~~e~~~~---~l-~~~~~~p~~~~~~~~~~  199 (211)
T PTZ00464        157 IDEDEMLGELDALDFDMEKEADAS---YL-ADALAVPGTKLPDVPTD  199 (211)
T ss_pred             CCHHHHHHHHHHHHHHHhccccch---hh-hccccCCCCCCCCCCCc
Confidence            999999999999998643322111   11 11246777777776654

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=100.00  E-value=1.8e-33  Score=227.08  Aligned_cols=173  Identities=27%  Similarity=0.370  Sum_probs=163.6

Q ss_pred             cccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780            2 FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQL   81 (219)
Q Consensus         2 ~~~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~   81 (219)
                      ||.+|||+..-...+++|..|+.+.+.|-+.++.+++.|+.+...||++++.|+|++|+.+||+|+++|..|.+.++++.
T Consensus         1 MG~lfsK~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~   80 (209)
T KOG2910|consen    1 MGNLFSKKSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLI   80 (209)
T ss_pred             CCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999997666899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 027780           82 RIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAE  161 (219)
Q Consensus        82 ~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~E  161 (219)
                      ||++++..||.+...+.|+.+|+.||.++|++|..|++|+|+++|||.+|.+++++||+++|++.+.   ..|++++++|
T Consensus        81 nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls---~~dEddi~~E  157 (209)
T KOG2910|consen   81 NLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLS---AEDEDDILAE  157 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc---cccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999887   4689999999


Q ss_pred             HHHHHHHHHHH-hhcCC
Q 027780          162 LEELEGAELEE-QLLQP  177 (219)
Q Consensus       162 L~~L~~e~lde-~~~~~  177 (219)
                      |++|+.+...+ +++++
T Consensus       158 ldaLese~~~e~e~Pev  174 (209)
T KOG2910|consen  158 LDALESELEVEAELPEV  174 (209)
T ss_pred             HHHHHHHhhhhhhcCCC
Confidence            99999887664 44443

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-31  Score=214.25  Aligned_cols=167  Identities=28%  Similarity=0.405  Sum_probs=149.6

Q ss_pred             cccccCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----HHHHHHHHHHHHHHHHHH
Q 027780            2 FTRLFGKPKQ---ETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKN-----KRAAIQCLKRKRLYEQQI   73 (219)
Q Consensus         2 ~~~lFGk~~~---~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~-----k~~A~~~Lk~KK~~e~~l   73 (219)
                      |+|+||++++   +|+...+|..+..+-+.++++|..|..++-......++. +.|.     |.+|+..||+||+||+|.
T Consensus         1 MnRiFG~~k~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~   79 (218)
T KOG1655|consen    1 MNRIFGRGKPKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQK   79 (218)
T ss_pred             CcccccCCCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            7899997654   368899999999999999999998876665544444432 4443     789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 027780           74 EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADF  153 (219)
Q Consensus        74 ~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~  153 (219)
                      ++++++.+|+++..+++++.+.+..+|.||+.|++.||..++.++||+|+++.|+|.+.++.++||+++|++.++.+ ++
T Consensus        80 d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~p-ei  158 (218)
T KOG1655|consen   80 DSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTP-DI  158 (218)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-Cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999886 59


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027780          154 DEDELEAELEELEGAEL  170 (219)
Q Consensus       154 DedELe~EL~~L~~e~l  170 (219)
                      |+++|++||++|.++..
T Consensus       159 de~dL~aELdaL~~E~d  175 (218)
T KOG1655|consen  159 DEADLDAELDALGQELD  175 (218)
T ss_pred             CHHHHHHHHHHHHhHhh
Confidence            99999999999976643

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.96  E-value=9.3e-29  Score=199.91  Aligned_cols=156  Identities=37%  Similarity=0.478  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           17 TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKAT   96 (219)
Q Consensus        17 ~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n   96 (219)
                      ++|.+|+.+++.|++++..|+.+|..+..+||++++.|++..|+.|||++|.+++++.++++++.+|+++..+|+++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027780           97 TETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEE  172 (219)
Q Consensus        97 ~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde  172 (219)
                      ..|+.+|+.|+++|+.+++.+++++|+++|++|++.++.+++|+++|+++++...++|++||++||++|+.+...+
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~  156 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEE  156 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999875434688999999999998776544

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=2.8e-25  Score=199.13  Aligned_cols=157  Identities=23%  Similarity=0.372  Sum_probs=150.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEG   92 (219)
Q Consensus        13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~   92 (219)
                      ...+-+|..|+.++..|.++++.|+.+|+....+++.+++.|.|+.|+.+||+||++|+.++++...++||++++.+|.+
T Consensus       229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~  308 (439)
T KOG2911|consen  229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDN  308 (439)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 027780           93 AKATTETVDALRTGASTMKAMQKA-TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAE  169 (219)
Q Consensus        93 a~~n~~v~~amk~~~~alk~~~~~-~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~  169 (219)
                      |++|+.|+.||+.|+.|||.++.. ...|+|+++||++.+.++.++||+++|+.+...+.+++|++||.||+.|+.+.
T Consensus       309 s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~  386 (439)
T KOG2911|consen  309 SQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADE  386 (439)
T ss_pred             hcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhcc
Confidence            999999999999999999999994 58999999999999999999999999999876667899999999999998664

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4e-21  Score=156.04  Aligned_cols=186  Identities=23%  Similarity=0.307  Sum_probs=152.4

Q ss_pred             ccCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780            5 LFGKPKQE-TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRI   83 (219)
Q Consensus         5 lFGk~~~~-~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~l   83 (219)
                      +||+++++ +-.+..-.-|...++.|++....|+.+-......+|+..++|+-..++...|.-.+..+++.+++++..+|
T Consensus         3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqi   82 (224)
T KOG3230|consen    3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQI   82 (224)
T ss_pred             cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987654 45555666677777778888888876666677888999999986665555555555556677799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 027780           84 HDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELE  163 (219)
Q Consensus        84 e~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~  163 (219)
                      ..+...|++.+++..+..+|+.++++|..||++||+..+.++|.+|+.+.+.++...++|+..++.  .++++|-|+|.+
T Consensus        83 qaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDd--al~~~edEEEtd  160 (224)
T KOG3230|consen   83 QAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDD--ALGDDEDEEETD  160 (224)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccchhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988763  466677789999


Q ss_pred             HHHHHHHHHhhcCCC---CCCCCCCCCCCCCC
Q 027780          164 ELEGAELEEQLLQPA---TTAPAAPVQVPAGR  192 (219)
Q Consensus       164 ~L~~e~lde~~~~~~---~~~p~~~~~~p~~~  192 (219)
                      +|.+++|||.-.++.   ..+|+...++|.+.
T Consensus       161 ~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~  192 (224)
T KOG3230|consen  161 DLVNQVLDEIGVDLASQLSSLPSAAGSLPIAK  192 (224)
T ss_pred             HHHHHHHHHHcccHHHHhccCcccccccchhh
Confidence            999999999655554   35666656666543

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5e-19  Score=144.99  Aligned_cols=214  Identities=19%  Similarity=0.239  Sum_probs=162.7

Q ss_pred             cccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780            2 FTRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQL   81 (219)
Q Consensus         2 ~~~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~   81 (219)
                      |+++||+ +|+...++|-.++|....+|++++.+|++.-..-...+|++.+.|+++.|+.+.|.--...+...+++.+..
T Consensus         4 ~~~~~~p-dPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKA   82 (227)
T KOG3229|consen    4 FGKTPGP-DPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKA   82 (227)
T ss_pred             cccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4444443 445688899999999999999999998766656666678888888888888887777777788888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 027780           82 RIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAE  161 (219)
Q Consensus        82 ~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~E  161 (219)
                      +|.++.+++..+-....+++.|..++++|+.+|.-+.++.+..+|.+|..++.++.-|.+++...+.+  ..|.+|+++|
T Consensus        83 qlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~es--v~d~eemeEe  160 (227)
T KOG3229|consen   83 QLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMES--VEDSEEMEEE  160 (227)
T ss_pred             HHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998765  3455556666


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCCCCC--CCcCCCchHHHHHHHHHHhc
Q 027780          162 LEELEGAELEEQLLQPATTAPAAPVQ----VPAGRQQARPV--PQKQRTAEEDELAALQAEMA  218 (219)
Q Consensus       162 L~~L~~e~lde~~~~~~~~~p~~~~~----~p~~~~~~~~~--~~~~~~~ee~el~~L~~~~~  218 (219)
                      .++-.+.+|-+.-....+.+|.++..    +|....++...  .....++++++|.+++.+||
T Consensus       161 ~deEVdkIL~~it~~~~~~~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa  223 (227)
T KOG3229|consen  161 ADEEVDKILTEITGEKAGEAPLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLA  223 (227)
T ss_pred             HHHHHHHHHHHHhccccccCCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHH
Confidence            55544444444333333344554432    23322221110  11134577899999999986

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=8.2e-18  Score=133.71  Aligned_cols=203  Identities=19%  Similarity=0.191  Sum_probs=158.7

Q ss_pred             cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780            4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRI   83 (219)
Q Consensus         4 ~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~l   83 (219)
                      ++|||+.+..-.+..-..||.+-+.+++....++++-.+....+|+..+.||++.|+.+.|+-..+.+|..+.++....+
T Consensus         2 niF~Kktvke~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki   81 (208)
T KOG3231|consen    2 NIFKKKTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKI   81 (208)
T ss_pred             CcccCCCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            68998865555555566777777777777777766666666677898999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 027780           84 HDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELE  163 (219)
Q Consensus        84 e~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~  163 (219)
                      .++..+...+.++..+.+||.+.+++|+.+|+.|+++++-.+|.+|+....+++...++|.+.++.  -+|...-++|-+
T Consensus        82 ~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDd--ild~sgDeeEs~  159 (208)
T KOG3231|consen   82 TSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDD--ILDGSGDEEESQ  159 (208)
T ss_pred             hhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHH--HhcCCCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999888888887776643  234444467799


Q ss_pred             HHHHHHHHHhhcCCCC---CCCCCCCCCCCCCCCCCCCCCcCCCchHHHHHHHH
Q 027780          164 ELEGAELEEQLLQPAT---TAPAAPVQVPAGRQQARPVPQKQRTAEEDELAALQ  214 (219)
Q Consensus       164 ~L~~e~lde~~~~~~~---~~p~~~~~~p~~~~~~~~~~~~~~~~ee~el~~L~  214 (219)
                      ++.+++||+.-.++.+   ++|++. +.|..  .+   +++...|.+++|.+|+
T Consensus       160 aiVNqVLDEIGIEisgKma~~P~a~-s~~~~--st---~kat~~Die~QLa~Lr  207 (208)
T KOG3231|consen  160 AIVNQVLDEIGIEISGKMAKAPSAR-SLPSA--ST---SKATISDIERQLAALR  207 (208)
T ss_pred             HHHHHHHHHhhhhhcchhccCCccC-CCCcc--cc---CCCcHHHHHHHHHHhc
Confidence            9999999996554433   334322 12211  11   1122457888998885

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=2.1e-08  Score=80.75  Aligned_cols=162  Identities=16%  Similarity=0.189  Sum_probs=122.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQC----LKRKRLYEQQIEQLGNFQLRIHDQMIM   89 (219)
Q Consensus        14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~----Lk~KK~~e~~l~~~~~~~~~le~~~~~   89 (219)
                      .....+-.|+-+...|++.-...++.-..+..++|+.+..||.+.|+.|    .|+|-..-    ++......|..+...
T Consensus         6 ~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~----n~LrlssRvDAVaaR   81 (203)
T KOG3232|consen    6 KLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAV----NYLRLSSRVDAVAAR   81 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            4556788899999999988888877777788899999999998877654    55543332    344556688889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHHHH
Q 027780           90 LEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAA--DFDEDELEAELEELEG  167 (219)
Q Consensus        90 ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~--~~DedELe~EL~~L~~  167 (219)
                      +++|-+...|-..|....+.|-...+.||+++|..+||.|..+-+..+--...+...+++..  ..+.++    .+.|.+
T Consensus        82 vqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~----Vd~Lmq  157 (203)
T KOG3232|consen   82 VQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGD----VDSLMQ  157 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhH----HHHHHH
Confidence            99999999999999999999999999999999999999999999887765555544433221  233333    677888


Q ss_pred             HHHHHhhcCCCCCCCC
Q 027780          168 AELEEQLLQPATTAPA  183 (219)
Q Consensus       168 e~lde~~~~~~~~~p~  183 (219)
                      ++.|+--++....+|.
T Consensus       158 ~vADeaGlElnq~lp~  173 (203)
T KOG3232|consen  158 QVADEAGLELNQELPQ  173 (203)
T ss_pred             HHHHHhchhhhhcCCC
Confidence            8888755555433343

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=98.29  E-value=0.00023  Score=59.96  Aligned_cols=148  Identities=25%  Similarity=0.251  Sum_probs=108.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 027780           14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHD--------   85 (219)
Q Consensus        14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~--------   85 (219)
                      .+..++.........+++++..++..+..-..+|..++..|+-+.|+.+|.++..++.++..+..++..+..        
T Consensus        41 ~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~  120 (221)
T PF04012_consen   41 KARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQ  120 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777788888999999999999999999999999999999999999998888876665554444        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 027780           86 ---QMIMLEGAKATTETVDALRTGASTMKAMQK---ATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE  159 (219)
Q Consensus        86 ---~~~~ie~a~~n~~v~~amk~~~~alk~~~~---~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe  159 (219)
                         +-..|...+....++.+-..++++-+.++.   .++++.....++.|.+.++..+--.++.....+     +...++
T Consensus       121 l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e  195 (221)
T PF04012_consen  121 LEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLE  195 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHH
Confidence               333456667777778887778888887776   356677777777777777666666666655321     122367


Q ss_pred             HHHHHHH
Q 027780          160 AELEELE  166 (219)
Q Consensus       160 ~EL~~L~  166 (219)
                      .+|+++.
T Consensus       196 ~~l~~~~  202 (221)
T PF04012_consen  196 AELEELE  202 (221)
T ss_pred             HHHHHhc
Confidence            7776664

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.00011  Score=60.68  Aligned_cols=146  Identities=18%  Similarity=0.237  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           21 KLNETLEMLEKKEKVLLKKASVEVEKAKDY---SKAKNKRAAIQCLKRKR-LYEQQIEQLGNFQLRIHDQMIMLEGAKAT   96 (219)
Q Consensus        21 ~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~---~~~~~k~~A~~~Lk~KK-~~e~~l~~~~~~~~~le~~~~~ie~a~~n   96 (219)
                      .|...+..+++|-..++++|........+|   +++-+-.-|+..||+|- +.-+|.-.+.++..+|.++.|.++.|...
T Consensus        16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t   95 (218)
T KOG1655|consen   16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT   95 (218)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            477889999999999999998766655544   45445567999999986 34567778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 027780           97 TETVDALRTGASTMKAMQKATN----IDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEG  167 (219)
Q Consensus        97 ~~v~~amk~~~~alk~~~~~~~----id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~  167 (219)
                      .+-+.--..+..|||.-++.|.    -=+|+++ ++++++++..=+.++=|...++-.-+.-+.+..+.+.+|.+
T Consensus        96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELda  169 (218)
T KOG1655|consen   96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDA  169 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHH
Confidence            8888877777788888887653    4456654 67787777777777777777876445556554444455553

>PRK10698 phage shock protein PspA; Provisional

Probab=98.14  E-value=0.0011  Score=56.24  Aligned_cols=143  Identities=15%  Similarity=0.171  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q 027780           17 TTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIH-----------D   85 (219)
Q Consensus        17 ~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le-----------~   85 (219)
                      .++.+.......+++++..++..+..-..+|+..+..|+-+.|+.+|.+|+.|..++..+..++....           .
T Consensus        45 ~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~  124 (222)
T PRK10698         45 STSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGE  124 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455566788888888888888889999999999999999999999988887766555544433           3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 027780           86 QMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDE---INEQTENMKQIQEALSTPIGAAADFDEDELEAEL  162 (219)
Q Consensus        86 ~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde---~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL  162 (219)
                      +-..|+.+.+-..++-+=..++.+.++++..+.--++...+.-   |.+-++..+--.+++..  +     ..+.|+.|+
T Consensus       125 L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~--~-----~~~~l~~e~  197 (222)
T PRK10698        125 LENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGF--G-----KQKSLDQQF  197 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhc--c-----CCCCHHHHH
Confidence            4445777788888888888899999998876543334444444   44444444433344321  1     113466667


Q ss_pred             HHHH
Q 027780          163 EELE  166 (219)
Q Consensus       163 ~~L~  166 (219)
                      +.|+
T Consensus       198 ~~le  201 (222)
T PRK10698        198 AELK  201 (222)
T ss_pred             HHhh
Confidence            6664

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0046  Score=51.15  Aligned_cols=161  Identities=22%  Similarity=0.236  Sum_probs=105.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 027780           13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQI---EQLGNFQLRIHDQMIM   89 (219)
Q Consensus        13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l---~~~~~~~~~le~~~~~   89 (219)
                      .....++..|......|+-+.+.|...|   ...||..--..-|..|+.++|.|.+..+..   .++.+....++++..+
T Consensus        19 Ral~~a~ReleRer~~le~qeKklvaeI---Kk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss   95 (224)
T KOG3230|consen   19 RALNKATRELERERQKLELQEKKLVAEI---KKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSS   95 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3455667777777777777765554333   345777765667899999999998777654   4788888889998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hcc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 027780           90 LEGAKATTETVDALRTGASTMKAM--QKA-TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELE  166 (219)
Q Consensus        90 ie~a~~n~~v~~amk~~~~alk~~--~~~-~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~  166 (219)
                      -.-++.-.-+-.||..-|..|.--  .+- +..++-.++||--.|.      ++++|...++.  +.||+|-++=.++..
T Consensus        96 ~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Em------m~daIDdal~~--~edEEEtd~lvnqVL  167 (224)
T KOG3230|consen   96 TSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEM------MDDAIDDALGD--DEDEEETDDLVNQVL  167 (224)
T ss_pred             HHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhcc--cchhHHHHHHHHHHH
Confidence            888888899999998887765432  222 2456666666544433      55566655553  456666665556555


Q ss_pred             HH---HHHHhhcCCC---CCCCCC
Q 027780          167 GA---ELEEQLLQPA---TTAPAA  184 (219)
Q Consensus       167 ~e---~lde~~~~~~---~~~p~~  184 (219)
                      .|   .+.+++.+.+   .++|.+
T Consensus       168 DEiGvdl~~qL~~~P~~~~~~~~a  191 (224)
T KOG3230|consen  168 DEIGVDLASQLSSLPSAAGSLPIA  191 (224)
T ss_pred             HHHcccHHHHhccCcccccccchh
Confidence            54   3555554443   344554

>TIGR02977 phageshock_pspA phage shock protein A

Probab=98.02  E-value=0.00085  Score=56.80  Aligned_cols=144  Identities=19%  Similarity=0.197  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 027780           16 LTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMI-------   88 (219)
Q Consensus        16 ~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~-------   88 (219)
                      ..++.........+++++..+...+..-..+|+..+..|+-+.|+.+|.+|+.++.+...+..+...+...+.       
T Consensus        44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~  123 (219)
T TIGR02977        44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIA  123 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556667788888888888888899999999999999999999999999888766665555444333       


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 027780           89 ----MLEGAKATTETVDALRTGASTMKAMQKAT---NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAE  161 (219)
Q Consensus        89 ----~ie~a~~n~~v~~amk~~~~alk~~~~~~---~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~E  161 (219)
                          .|+.++....++.+=..++.+.+.++..+   +.+.--..++.|.+-++..+--.++..  ..     +.+.|+.+
T Consensus       124 ~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~--~~-----~~~~l~~~  196 (219)
T TIGR02977       124 KLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYD--LG-----RKPSLEDE  196 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhh--cc-----CCCCHHHH
Confidence                34445555555555555667766666543   444444444444444333332333332  11     12457777


Q ss_pred             HHHHH
Q 027780          162 LEELE  166 (219)
Q Consensus       162 L~~L~  166 (219)
                      |+.|+
T Consensus       197 l~~l~  201 (219)
T TIGR02977       197 FAELE  201 (219)
T ss_pred             HHHhc
Confidence            77764

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=97.80  E-value=0.012  Score=50.22  Aligned_cols=149  Identities=19%  Similarity=0.188  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 027780           15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM-------   87 (219)
Q Consensus        15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~-------   87 (219)
                      +..++..+...-..++++...+...+.....+|+..+..|+-..|+.+|-++..|++++..+...+..+....       
T Consensus        43 ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~  122 (225)
T COG1842          43 ARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQL  122 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666777777777777888888889999999999999999999999998876665555444333       


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 027780           88 ----IMLEGAKATTETVDALRTGASTMKAMQK---ATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEA  160 (219)
Q Consensus        88 ----~~ie~a~~n~~v~~amk~~~~alk~~~~---~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~  160 (219)
                          ..|....+-..++.+=..+.+|-..+++   .++.+.--..++.|.+-++....-.++.+.-.    ....++++.
T Consensus       123 ~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~----~~~~~dl~~  198 (225)
T COG1842         123 AALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELA----EGSGDDLDK  198 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh----ccCcccHHH
Confidence                3455566667777777777777777765   44554555555555555555555555554310    012356777


Q ss_pred             HHHHHHH
Q 027780          161 ELEELEG  167 (219)
Q Consensus       161 EL~~L~~  167 (219)
                      ||+++..
T Consensus       199 e~a~~~~  205 (225)
T COG1842         199 EFAQAGA  205 (225)
T ss_pred             HHHHhcc
Confidence            7777654

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0063  Score=50.67  Aligned_cols=169  Identities=22%  Similarity=0.261  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           23 NETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKR-KRLY---EQQIEQLGNFQLRIHDQMIMLEGAKATTE   98 (219)
Q Consensus        23 r~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~-KK~~---e~~l~~~~~~~~~le~~~~~ie~a~~n~~   98 (219)
                      .++|..|..-+.-|+++-+-...++-.-+..    .|+.+..+ |++.   -+..-++..++.+|+.++.+|+......+
T Consensus        20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE   95 (221)
T KOG1656|consen   20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   95 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4567777777777777666655555444322    23332222 2211   22233567777788888777776655444


Q ss_pred             HHHHHHHHHHHHHHHhc---cC----CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 027780           99 TVDALRTGASTMKAMQK---AT----NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELE  171 (219)
Q Consensus        99 v~~amk~~~~alk~~~~---~~----~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~ld  171 (219)
                      -+   +.-+.+|..|..   .|    +-=+||++ |++-+.+..+.+|.+=|+..++.+-++..+=-++||..-..+--+
T Consensus        96 nA---~~n~Evl~~m~~~A~AmK~~h~~mDiDkV-dd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeq  171 (221)
T KOG1656|consen   96 NA---NTNTEVLDAMGSAAKAMKAAHKNMDIDKV-DDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQ  171 (221)
T ss_pred             cc---cccHHHHHHHHHHHHHHHHHHhccChhHH-HHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHH
Confidence            33   344444444432   22    22344443 566677777888888889888876556555557777654433333


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 027780          172 EQLLQPATTAPAAPVQVPAGRQQARPVP  199 (219)
Q Consensus       172 e~~~~~~~~~p~~~~~~p~~~~~~~~~~  199 (219)
                      +.+..-...++.|||.+|+++....|..
T Consensus       172 eeld~~ll~~~~p~v~LP~vPs~~lPa~  199 (221)
T KOG1656|consen  172 EELDKELLDIRAPPVPLPDVPSIALPAK  199 (221)
T ss_pred             HHHHHHHhccCCCCCCCCCCCccccCcc
Confidence            4555555567777777775444344443

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.69  E-value=0.012  Score=49.71  Aligned_cols=46  Identities=24%  Similarity=0.194  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027780           72 QIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKAT  117 (219)
Q Consensus        72 ~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~  117 (219)
                      ..-.+.+++.++..++++++......+....=...-.+|+.-++.|
T Consensus        69 ~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaL  114 (211)
T PTZ00464         69 QKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTL  114 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666666666666666555555555555555555443

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=97.12  E-value=0.078  Score=44.51  Aligned_cols=99  Identities=19%  Similarity=0.176  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHH-------HHhc
Q 027780           73 IEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN-IDDVDKTMDEINEQTENMKQIQ-------EALS  144 (219)
Q Consensus        73 l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~-id~Ve~~mde~~e~~e~~~eI~-------e~l~  144 (219)
                      +-++.++.+.|...+..+.+..+....--+|...+.-|......|+ +..|..+++.|.-+....+...       +.+.
T Consensus        44 ~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~  123 (204)
T COG5491          44 LYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMD  123 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344455555555555555555554445555555555666666666 7777777777766665444444       3333


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 027780          145 TPIGAAADFDEDELEAELEELEGAELEEQLL  175 (219)
Q Consensus       145 ~~~~~~~~~DedELe~EL~~L~~e~lde~~~  175 (219)
                      .+.+    .+..+..++++++.+..+++.-+
T Consensus       124 v~~~----~~v~~~l~~lde~v~~v~pEi~l  150 (204)
T COG5491         124 VVVG----DPVLEDLEELDELVNKVLPEIGL  150 (204)
T ss_pred             cCcc----chhhhhHHHHHHHHHhhchhhhh
Confidence            2221    23455566677766666666433

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=97.03  E-value=0.0022  Score=51.38  Aligned_cols=88  Identities=20%  Similarity=0.231  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           25 TLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRK-----RLYEQQIEQLGNFQLRIHDQMIMLEGAKATTET   99 (219)
Q Consensus        25 ~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~K-----K~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v   99 (219)
                      .+..|...+..|++++..+..+++++     ...|+.+++..     +.|=+.+-++..++.++.....+++......+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~-----~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~   76 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKL-----EKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIET   76 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC-----HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666665555443     23444444432     244445556666667777777777777777777


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 027780          100 VDALRTGASTMKAMQKAT  117 (219)
Q Consensus       100 ~~amk~~~~alk~~~~~~  117 (219)
                      .........+|+..++.|
T Consensus        77 a~~~~~v~~al~~~~~~L   94 (171)
T PF03357_consen   77 AQSNQQVVKALKQSSKAL   94 (171)
T ss_dssp             HHHHHHHSSS----SHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            766666666666665543

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=95.59  E-value=1.1  Score=37.24  Aligned_cols=149  Identities=17%  Similarity=0.171  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           14 NALTTLDKLNETLEMLEKKEKVLLKKASVEV-----EKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMI   88 (219)
Q Consensus        14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~-----~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~   88 (219)
                      ..+.++..|......|+++|.........+.     ..|+.+++.+     +.+=+..-.+..++..+..++++|+....
T Consensus        31 ~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrK-----K~~E~ql~q~~~ql~nLEq~~~~iE~a~~  105 (191)
T PTZ00446         31 KNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRK-----KLYEQEIENILNNRLTLEDNMINLENMHL  105 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888888888888877655443222     2344444332     23444555666777888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCCCCCHHHHHHHH--HHH
Q 027780           89 MLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQT-ENMKQIQEALSTPIGAAADFDEDELEAEL--EEL  165 (219)
Q Consensus        89 ~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~-e~~~eI~e~l~~~~~~~~~~DedELe~EL--~~L  165 (219)
                      +.+....-..-..||+...+-|. +.   ++|++-+-+.|..+.. +.++-++.-+...++. +++ +.||+ +|  ++|
T Consensus       106 ~~ev~~aLk~g~~aLK~~~k~~~-id---kVd~lmDei~E~~e~~~EIseaLs~~~~~~~DE-dEL-e~ELe-~Le~e~l  178 (191)
T PTZ00446        106 HKIAVNALSYAANTHKKLNNEIN-TQ---KVEKIIDTIQENKDIQEEINQALSFNLLNNVDD-DEI-DKELD-LLKEQTM  178 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-HH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCH-HHH-HHHHH-HHHHHHH
Confidence            88877777777888888776663 22   3444444333333333 3344455443334442 222 33433 23  455


Q ss_pred             HHHHHHHhh
Q 027780          166 EGAELEEQL  174 (219)
Q Consensus       166 ~~e~lde~~  174 (219)
                      +...+.+-+
T Consensus       179 ~~~ll~~~~  187 (191)
T PTZ00446        179 EEKLLKELI  187 (191)
T ss_pred             HHHHHHHHh
Confidence            555555533

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=94.34  E-value=2.8  Score=35.29  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHH
Q 027780           56 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATN----IDDVDKTMDEINE  131 (219)
Q Consensus        56 k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~----id~Ve~~mde~~e  131 (219)
                      +..+..++|-+    ++..+++.....|++....+........+.+-|..++..|..+..-..    ++.+...|+-.+-
T Consensus        38 ~~l~~~~~~~~----~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~  113 (204)
T COG5491          38 RRLAEELYKLR----KARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQL  113 (204)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555544    445567788888888888888888888888888888888885554333    3444444444444


Q ss_pred             HHHHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHHHHH
Q 027780          132 QTENMKQIQEALST-PIGAAADFDEDELEAELEELEGA  168 (219)
Q Consensus       132 ~~e~~~eI~e~l~~-~~~~~~~~DedELe~EL~~L~~e  168 (219)
                      -.+.+.+..+.... +..    .+.+++++++..+.-+
T Consensus       114 ~le~m~e~~~v~~~~~v~----~~l~~lde~v~~v~pE  147 (204)
T COG5491         114 RLETMDELMDVVVGDPVL----EDLEELDELVNKVLPE  147 (204)
T ss_pred             HHHHHHHHhccCccchhh----hhHHHHHHHHHhhchh
Confidence            44577676665554 442    4667888888877655

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=2.8  Score=35.29  Aligned_cols=48  Identities=17%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780            4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSK   52 (219)
Q Consensus         4 ~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~   52 (219)
                      .+||+. +.|+|.+...+.+..++.=-+.++..-..|..+..++++.++
T Consensus         2 ~l~~~~-~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK   49 (227)
T KOG3229|consen    2 GLFGKT-PGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIK   49 (227)
T ss_pred             CccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467664 346677777777777766666666666666666666666553

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=3.1  Score=33.89  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH---HHH--HHHHH-HHHHHH
Q 027780           15 ALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIE---QLG--NFQLR-IHDQMI   88 (219)
Q Consensus        15 ~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~---~~~--~~~~~-le~~~~   88 (219)
                      +.+.|.+-|.   .++++...|+-.|...   |........+..|++++.-||.--+.+.   ++.  +.+.. +..++-
T Consensus        23 t~RdierdRr---~me~~Ek~LElEIkk~---Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~k   96 (208)
T KOG3231|consen   23 TQRDIERDRR---AMEKQEKQLELEIKKM---AAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMK   96 (208)
T ss_pred             hHHHHHHHHH---HHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            3444555544   4567766666555432   3444456677888888777765544433   222  22222 222222


Q ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHHH
Q 027780           89 MLEGAKATTETVDALRT------GASTMKAMQKATNIDDVDKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEAE  161 (219)
Q Consensus        89 ~ie~a~~n~~v~~amk~------~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~E  161 (219)
                      --..+.++..++.+|..      ....|+....       .      +.-++.++| |++.|.+-++++  -|++|-.+=
T Consensus        97 m~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~-------a------nmKMemTeEMiNDTLDdild~s--gDeeEs~ai  161 (208)
T KOG3231|consen   97 MAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQK-------A------NMKMEMTEEMINDTLDDILDGS--GDEEESQAI  161 (208)
T ss_pred             HHHHhchHHHHHHHHHccCCHHHHHHHHHHHHH-------H------HHHhhhHHHHHHhhHHHHhcCC--CcHHHHHHH
Confidence            23334444444544432      2222333221       1      111222222 566665555542  345554444


Q ss_pred             HHHHHHH---HHHHhhcCCCCCCCCCCC
Q 027780          162 LEELEGA---ELEEQLLQPATTAPAAPV  186 (219)
Q Consensus       162 L~~L~~e---~lde~~~~~~~~~p~~~~  186 (219)
                      .++...+   ++..+|...++..|.+..
T Consensus       162 VNqVLDEIGIEisgKma~~P~a~s~~~~  189 (208)
T KOG3231|consen  162 VNQVLDEIGIEISGKMAKAPSARSLPSA  189 (208)
T ss_pred             HHHHHHHhhhhhcchhccCCccCCCCcc
Confidence            4444443   345567666655555533

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=3.9  Score=37.95  Aligned_cols=32  Identities=9%  Similarity=0.142  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           19 LDKLNETLEMLEKKEKVLLKKASVEVEKAKDY   50 (219)
Q Consensus        19 i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~   50 (219)
                      |..+...+..|.+-+..|.++|+...++++++
T Consensus       228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~  259 (439)
T KOG2911|consen  228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKS  259 (439)
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=90.26  E-value=18  Score=34.86  Aligned_cols=150  Identities=18%  Similarity=0.251  Sum_probs=81.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKD------YSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM   87 (219)
Q Consensus        14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~------~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~   87 (219)
                      .+...+..+++.+..++.++..+...++.....-.+      .++..-+..=+.+|..+-.|-..+..+...+.+++...
T Consensus        98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F  177 (560)
T PF06160_consen   98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF  177 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence            345556666666666666666665555443322111      12222333444556666666666666666666666666


Q ss_pred             HHHHHHHHH------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHH
Q 027780           88 IMLEGAKAT------TETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEA  160 (219)
Q Consensus        88 ~~ie~a~~n------~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~  160 (219)
                      ...+....+      .+++..++.....|..+...+ +.=+..+-.++-++.+.... +.+|..+++.    ++..+++.
T Consensus       178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~I-P~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~----l~~~~i~~  252 (560)
T PF06160_consen  178 SEFEELTENGDYLEAREILEKLKEETDELEEIMEDI-PKLYKELQKEFPDQLEELKEGYREMEEEGYY----LEHLDIEE  252 (560)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC----CCCCCHHH
Confidence            665555554      355666666666666654443 23344444455555544444 6667777664    44556777


Q ss_pred             HHHHHHHH
Q 027780          161 ELEELEGA  168 (219)
Q Consensus       161 EL~~L~~e  168 (219)
                      +++.+...
T Consensus       253 ~i~~i~~~  260 (560)
T PF06160_consen  253 EIEQIEEQ  260 (560)
T ss_pred             HHHHHHHH
Confidence            77777643

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=90.18  E-value=18  Score=34.82  Aligned_cols=151  Identities=13%  Similarity=0.236  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAK------DYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQM   87 (219)
Q Consensus        14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak------~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~   87 (219)
                      .+...|..+++.++.++.++..+...++.....-.      ..++..-+..=+.+|-.+-.|-..+..+...+.+++...
T Consensus       102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f  181 (569)
T PRK04778        102 KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEF  181 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence            34556777777777777777666555544332211      112222333344445455445455555666666666555


Q ss_pred             HHHHHHHHH------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCCHHHHHH
Q 027780           88 IMLEGAKAT------TETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQ-IQEALSTPIGAAADFDEDELEA  160 (219)
Q Consensus        88 ~~ie~a~~n------~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~e-I~e~l~~~~~~~~~~DedELe~  160 (219)
                      .+.+....+      .+++..++.....|..+...+ ++=+.++-..+=++.+.... ..+|..+++.    ++..+++.
T Consensus       182 ~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i-P~l~~~~~~~~P~ql~el~~gy~~m~~~gy~----~~~~~i~~  256 (569)
T PRK04778        182 SQFVELTESGDYVEAREILDQLEEELAALEQIMEEI-PELLKELQTELPDQLQELKAGYRELVEEGYH----LDHLDIEK  256 (569)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC----CCCCChHH
Confidence            555554443      234444555555555443332 12222222233233322222 5566667664    55567778


Q ss_pred             HHHHHHHHH
Q 027780          161 ELEELEGAE  169 (219)
Q Consensus       161 EL~~L~~e~  169 (219)
                      ++..|..+.
T Consensus       257 ~i~~l~~~i  265 (569)
T PRK04778        257 EIQDLKEQI  265 (569)
T ss_pred             HHHHHHHHH
Confidence            888776553

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.98  E-value=16  Score=30.08  Aligned_cols=115  Identities=23%  Similarity=0.380  Sum_probs=71.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC--CHHHHHHHHHHHHH
Q 027780           55 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQK-AT--NIDDVDKTMDEINE  131 (219)
Q Consensus        55 ~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~-~~--~id~Ve~~mde~~e  131 (219)
                      .|..|.++||---       +++..-..|++....-.-..+-..|+.+|..+   |+.+|= .|  -.|+.+.-.+++.-
T Consensus        61 kkne~~n~Lrlss-------RvDAVaaRvqTavtmr~Vt~sM~gVvK~md~a---lktmNLekis~~MDkFE~qFedldv  130 (203)
T KOG3232|consen   61 KKNEAVNYLRLSS-------RVDAVAARVQTAVTMRKVTKSMAGVVKSMDSA---LKTMNLEKISQLMDKFEKQFEDLDV  130 (203)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHhhhhhh
Confidence            5678888887543       45555556655555444455556667777655   666653 22  36788888888777


Q ss_pred             HHHHHHHHHHHhcC--CCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 027780          132 QTENMKQIQEALST--PIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAP  185 (219)
Q Consensus       132 ~~e~~~eI~e~l~~--~~~~~~~~DedELe~EL~~L~~e~lde~~~~~~~~~p~~~  185 (219)
                      +...   +.+++++  .+..+ .-|-|.|..+...-..-+|...++...  +|+.|
T Consensus       131 qt~~---me~~m~~st~l~tp-q~~Vd~Lmq~vADeaGlElnq~lp~~~--~~a~~  180 (203)
T KOG3232|consen  131 QTEV---MEKAMSGSTALSTP-QGDVDSLMQQVADEAGLELNQELPQNV--VPAIS  180 (203)
T ss_pred             HHHH---HHHhccCcccccCC-hhHHHHHHHHHHHHhchhhhhcCCCCC--CCCcC
Confidence            6544   4556654  23333 446688999987766667777776654  45543

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=86.69  E-value=26  Score=32.22  Aligned_cols=42  Identities=10%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 027780           94 KATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTEN  135 (219)
Q Consensus        94 ~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~  135 (219)
                      +.-.+++..|......+.......+++.|..+...+......
T Consensus       131 r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~  172 (383)
T PF04100_consen  131 RQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNE  172 (383)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHH
Confidence            344577777877777776666667899998888888775533

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=82.92  E-value=13  Score=25.72  Aligned_cols=40  Identities=13%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 027780           37 LKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQL   76 (219)
Q Consensus        37 e~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~   76 (219)
                      ..++..+......++..++...|..++++.+++.+-++.+
T Consensus        37 ~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i   76 (78)
T PF07743_consen   37 EERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666677777778899999999999999998866554

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	9e-17
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	2e-14
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	9e-11
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	1e-07

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens} Length = 104

 Score = 72.0 bits (176), Expect = 9e-17
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 118 NIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQP 177
           +ID VD+ M +I +Q E  ++I  A+S P+G   +FDEDEL AELEELE  EL++ LL+ 
Sbjct: 4   DIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEI 63

Query: 178 ATTAPAAPVQVPAGRQQARPVPQK-QRTAEEDELAALQAEM 217
           +         VP+    ++P  +K +   +  EL      M
Sbjct: 64  SGPETVPLPNVPSIALPSKPAKKKEEEDDDMKELENWAGSM 104

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Length = 79

 Score = 65.3 bits (159), Expect = 2e-14
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQI 73
               + +L +T EML KK++ L KK   E+  AK +   KNKRAA+Q LKRK+ YE+Q+
Sbjct: 3  MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGT-KNKRAALQALKRKKRYEKQL 61

Query: 74 EQLGNFQLRIHDQMIMLE 91
           Q+      I  Q   LE
Sbjct: 62 AQIDGTLSTIEFQREALE 79

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score = 58.3 bits (140), Expect = 9e-11
 Identities = 37/196 (18%), Positives = 80/196 (40%), Gaps = 3/196 (1%)

Query: 21  KLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQ 80
           K+ + + +++++ + + ++        KD +K   K   I   K      + + +L   +
Sbjct: 18  KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASK 77

Query: 81  LRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQ 140
             ++  ++ ++   A      +L+     MKAMQ    I ++  TM E++++      I+
Sbjct: 78  AHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIE 137

Query: 141 EALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQARPVPQ 200
           E L       +  D++E+E E E      L E        AP+         +    +  
Sbjct: 138 EMLEDTFE--SMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAA 195

Query: 201 KQRTAEEDE-LAALQA 215
            +   EE+E L A+Q+
Sbjct: 196 SEDEEEEEEALEAMQS 211

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 2/163 (1%)

Query: 21  KLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQ 80
           K+ + + +++++ + + ++        KD +K   K   I   K      + + +L   +
Sbjct: 18  KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASK 77

Query: 81  LRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQ 140
             ++  ++ ++   A      +L+     MKAMQ    I ++  TM E++++      I+
Sbjct: 78  AHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIE 137

Query: 141 EALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPA 183
           E L     +    D++E+E E E      L E        AP+
Sbjct: 138 EMLEDTFESM--DDQEEMEEEAEMEIDRILFEITAGALGKAPS 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.89
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.85
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	99.85
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	99.75
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	99.16
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	98.59
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.77
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	97.74
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	96.93
3htu_B	39	Vacuolar protein-sorting-associated protein 20; ES	86.85

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.89  E-value=8.7e-24  Score=172.46  Aligned_cols=164  Identities=17%  Similarity=0.214  Sum_probs=124.3

Q ss_pred             cccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH----HHHHHHHHHHHHHHHHHHHHHH
Q 027780            4 RLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKR----AAIQCLKRKRLYEQQIEQLGNF   79 (219)
Q Consensus         4 ~lFGk~~~~~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~----~A~~~Lk~KK~~e~~l~~~~~~   79 (219)
                      ++|++++|++.+..++..|+.+++.|++++..|++.-......+|++.+.|++.    .|+.++|.||.    ..+++..
T Consensus         1 ~~~~~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~   76 (179)
T 2gd5_A            1 GAMAEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYAS   76 (179)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence            468888888899999999999999999999999988888888889999888865    67778888865    5568888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 027780           80 QLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE  159 (219)
Q Consensus        80 ~~~le~~~~~ie~a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe  159 (219)
                      ..+|+.+.+.++++.++..|+++|+.++++|+.+|+.||+++|..+|++|.++++++++|+++|+++++.  ..|+++.+
T Consensus        77 ~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~--~~~~~~~e  154 (179)
T 2gd5_A           77 KAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES--MDDQEEME  154 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCCCcH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864  33555666


Q ss_pred             HHHHHHHHHHHHHh
Q 027780          160 AELEELEGAELEEQ  173 (219)
Q Consensus       160 ~EL~~L~~e~lde~  173 (219)
                      +|.+++.+.++++.
T Consensus       155 ee~d~~v~kVl~E~  168 (179)
T 2gd5_A          155 EEAEMEIDRILFEI  168 (179)
T ss_dssp             --CTTHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777766666654

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.85  E-value=6.6e-21  Score=141.63  Aligned_cols=101  Identities=36%  Similarity=0.566  Sum_probs=87.2

Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 027780          115 KATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGRQQ  194 (219)
Q Consensus       115 ~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde~~~~~~~~~p~~~~~~p~~~~~  194 (219)
                      ++|+||+|+++||++++++++++||+++|+++++.+.++|++||++||++|+++.++++++.+....|...|+||++.+|
T Consensus         1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp   80 (104)
T 3um3_B            1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALP   80 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCC
Confidence            36899999999999999999999999999999876678999999999999999999999998765555667889988888


Q ss_pred             CCCCCCcCCCchHHHHHHHHHHh
Q 027780          195 ARPVPQKQRTAEEDELAALQAEM  217 (219)
Q Consensus       195 ~~~~~~~~~~~ee~el~~L~~~~  217 (219)
                      +.|.++  ..++|+++++|+++-
T Consensus        81 ~~p~~~--~~~edde~~~L~~wa  101 (104)
T 3um3_B           81 SKPAKK--KEEEDDDMKELENWA  101 (104)
T ss_pred             CCcccC--CccchHHHHHHHHHH
Confidence            776433  345678899999875

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=99.85  E-value=9.2e-22  Score=164.57  Aligned_cols=204  Identities=19%  Similarity=0.213  Sum_probs=125.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEG   92 (219)
Q Consensus        13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~   92 (219)
                      ..++.+-..||.+.+.|++.+..|++.-......+|++++.|+...|+.+.|.-.+..++..+++....+|..+.+++++
T Consensus        10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt   89 (218)
T 3frt_A           10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999999999988877888889999999998877777766666667777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027780           93 AKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEE  172 (219)
Q Consensus        93 a~~n~~v~~amk~~~~alk~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde  172 (219)
                      +.++..|.++|+.++++|+.+|+.|++++|..+|++|..+++.++-++++|.+.++.  ..|+++.++|-+.+.+.++++
T Consensus        90 ~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~--~~~~~~~eee~d~~v~kVldE  167 (218)
T 3frt_A           90 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES--MDDQEEMEEEAEMEIDRILFE  167 (218)
T ss_dssp             HHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC------------------CTTSTTTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc--ccccCCchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998764  234455667777788888887


Q ss_pred             hhcCCCCCCCCCC-CCCCCCCCCCCCCCCcCCCchHHHHHHHHHHhc
Q 027780          173 QLLQPATTAPAAP-VQVPAGRQQARPVPQKQRTAEEDELAALQAEMA  218 (219)
Q Consensus       173 ~~~~~~~~~p~~~-~~~p~~~~~~~~~~~~~~~~ee~el~~L~~~~~  218 (219)
                      ...+....+|+++ +.+|....+..++....++++++.|.+++++|+
T Consensus       168 i~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~  214 (218)
T 3frt_A          168 ITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLA  214 (218)
T ss_dssp             C----------------------------------------------
T ss_pred             HhHhHhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHH
Confidence            6544433445432 224432111111000112445667888998875

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=99.75  E-value=1e-17  Score=118.81  Aligned_cols=78  Identities=41%  Similarity=0.479  Sum_probs=75.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLE   91 (219)
Q Consensus        13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie   91 (219)
                      |++..+|.+|++++++|++++.+|+.+|+.+...||+++ .+||..|+.|||+||+||++|++++++++||++++++||
T Consensus         2 p~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A            2 AMEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999998 889999999999999999999999999999999999885

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=99.16  E-value=5.9e-12  Score=83.04  Aligned_cols=54  Identities=30%  Similarity=0.472  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHHHHHHH
Q 027780          117 TNIDDVDKTMDEINEQTENMKQIQEALSTPIGAA--ADFDEDELEAELEELEGAEL  170 (219)
Q Consensus       117 ~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~--~~~DedELe~EL~~L~~e~l  170 (219)
                      +|||+|++++|+|.+.++.++||+++|+++++.+  +++|+++|++||++|..+.+
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~   56 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF   56 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence            5899999999999999999999999999998876  47999999999999987754

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=98.59  E-value=1.2e-08  Score=66.98  Aligned_cols=37  Identities=46%  Similarity=0.686  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 027780          133 TENMKQIQEALSTPIGAAADFDEDELEAELEELEGAEL  170 (219)
Q Consensus       133 ~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~l  170 (219)
                      ++.++||+++|+++++.+ ++||+||++||++|+++.+
T Consensus         1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~   37 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELL   37 (57)
T ss_dssp             ---------------CCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHh
Confidence            467899999999999876 8999999999999998875

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.77  E-value=6.7e-06  Score=66.35  Aligned_cols=152  Identities=12%  Similarity=0.079  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           21 KLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQ-CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTET   99 (219)
Q Consensus        21 ~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~-~Lk~KK~~e~~l~~~~~~~~~le~~~~~ie~a~~n~~v   99 (219)
                      .+|.....|.+.+..|++.+..+...-++. ...=|..|+. -...-|.|=+++-+.-.+..++.....+|++.......
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~-~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKV-KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777777888777777666555444433 1222333332 12223455566667777777777777777777777666


Q ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHH--HHHHHH---HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 027780          100 VDALRTGASTMKAMQKATNIDDVDKTM--DEINEQ---TENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQL  174 (219)
Q Consensus       100 ~~amk~~~~alk~~~~~~~id~Ve~~m--de~~e~---~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e~lde~~  174 (219)
                      +.++...+.+|+...+.|  ..+...|  ++++..   .+..-+..++++..++.  .+|+..-.++.++-..++++..+
T Consensus        90 ~~~~~~v~~am~~~~~~M--~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d--~~~~~~~~~~~eee~d~~v~kVl  165 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLED--TFESMDDQEEMEEEAEMEIDRIL  165 (179)
T ss_dssp             HHHHHHHTSSCCCCSHHH--HTTTSSTTSSSCCHHHHHHHHHHHHHTSCC---------------------CTTHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccCCCcHHHHHHHHHHHH
Confidence            655555555555444332  3333333  233333   23444444455665542  45544323444444444555555


Q ss_pred             cCC
Q 027780          175 LQP  177 (219)
Q Consensus       175 ~~~  177 (219)
                      .++
T Consensus       166 ~E~  168 (179)
T 2gd5_A          166 FEI  168 (179)
T ss_dssp             CCC
T ss_pred             HHh
Confidence            544

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=97.74  E-value=4.4e-05  Score=63.49  Aligned_cols=155  Identities=11%  Similarity=0.151  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 027780           14 NALTTLDKLNETLEMLEKKEKVLLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIE---QLGNFQLRIHDQMIML   90 (219)
Q Consensus        14 ~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~---~~~~~~~~le~~~~~i   90 (219)
                      ..+.++..|...+..|++....+..+|...   ||+.-..+-|..|+.++|.||...+.+.   ++.+....|.++....
T Consensus        18 ~Lr~~~R~LdR~~~kle~eEkk~~~~IKka---akkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~   94 (218)
T 3frt_A           18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDA---AKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL   94 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566677777766777655554444332   3443345667888888888876666443   5566666666666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q 027780           91 EGAKATTETVDALRTGASTM--KAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGA  168 (219)
Q Consensus        91 e~a~~n~~v~~amk~~~~al--k~~~~~~~id~Ve~~mde~~e~~e~~~eI~e~l~~~~~~~~~~DedELe~EL~~L~~e  168 (219)
                      .-+.+-..+..+|+..+..|  ..+.+.|  ++++.=+..   .=-..+.++++|....+.  +.+++|.+++.+....+
T Consensus        95 ~v~~sM~~st~~M~~~n~~m~l~~i~~tM--~efekE~~k---~~i~eEmm~Da~d~~~~~--~~~eee~d~~v~kVldE  167 (218)
T 3frt_A           95 RVAGSLQKSTEVMKAMQSLVKIPEIQATM--RELSKEMMK---AGIIEEMLEDTFESMDDQ--EEMEEEAEMEIDRILFE  167 (218)
T ss_dssp             ----CCCCCHHHHHHHHHSTTSHHHHHHH--HHHHHHHHH---HSCC------------------CTTSTTTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHH---hhhHHHHHHHHHhccccc--CCchHHHHHHHHHHHHH
Confidence            55555566677777777666  4444432  333333333   111223456666554432  23455666777777666


Q ss_pred             HHHHhhcCCC
Q 027780          169 ELEEQLLQPA  178 (219)
Q Consensus       169 ~lde~~~~~~  178 (219)
                      .....+...+
T Consensus       168 i~~~~l~~~p  177 (218)
T 3frt_A          168 ITAGALGKAP  177 (218)
T ss_dssp             C---------
T ss_pred             HhHhHhhcCC
Confidence            6655555443

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B

Probab=96.93  E-value=0.0012  Score=44.76  Aligned_cols=44  Identities=43%  Similarity=0.698  Sum_probs=29.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHH---hhcCCCCCCCCCCCCCCC
Q 027780          146 PIGAAADFDEDELEAELEELEGAELEE---QLLQPATTAPAAPVQVPA  190 (219)
Q Consensus       146 ~~~~~~~~DedELe~EL~~L~~e~lde---~~~~~~~~~p~~~~~~p~  190 (219)
                      +++.+ ++||+||++||+.|..+..-+   .++....++|+.|..+|+
T Consensus         2 sy~~p-diDE~eL~aELdaL~~e~~~~~~pSyL~~~~~~P~~p~~~p~   48 (69)
T 3uly_B            2 SYGTP-ELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPT   48 (69)
T ss_pred             CCCCC-CCCHHHHHHHHHHHHHHHhcccCcchhhccccCCCCCCCCCC
Confidence            45555 799999999999998775422   344444445666555553

>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}

Probab=86.85  E-value=1.4  Score=26.26  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=26.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027780           13 TNALTTLDKLNETLEMLEKKEKVLLKKASVEVE   45 (219)
Q Consensus        13 ~~~~~~i~~Lr~~~~~L~kki~~Le~~i~~~~~   45 (219)
                      +..+++|..|+.+.+.|.+....++..++.+.+
T Consensus         5 T~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~e   37 (39)
T 3htu_B            5 TEQDKAILQLKQQRDKLRQYQKRIAQQLERERA   37 (39)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            567999999999999999998888777776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	83.34

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=4.5  Score=26.72  Aligned_cols=42  Identities=10%  Similarity=0.033  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 027780           36 LLKKASVEVEKAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLG   77 (219)
Q Consensus        36 Le~~i~~~~~~ak~~~~~~~k~~A~~~Lk~KK~~e~~l~~~~   77 (219)
                      +..++..+....+.++..++...|..++++-|.|.+.+..+.
T Consensus        45 i~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~   86 (95)
T d1fpoa2          45 VKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAE   86 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHH
Confidence            456667777777888889999999999999999988666554