Citrus Sinensis ID: 027791

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWMLI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHccccccccccccccccccccccEEEEEcccccccccHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEccccccccHHHHHHHHcccccccccccccEEEEEcccHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHHHcccEEEEEEEEEEEEccHHHHHHHHcccccccccccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQydydeecdlhgqasepmlrldsagspprrgvqwvligdpgvkkhvYADNLskllevphismgslvrqelsprSALYKQIANAVNEGKLVPEDVIFALLSKRLEegyyrgesgfildgiprtriqAVSLEFCYTMALAFLFLFLYGCCVIIGSVIlneqvdgslcltcpcntgwlCRKFLIKLWMLI
Flexible Loop (DISEMBL)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANavnegklvpeDVIFALLSKRLEEGYYRgesgfildgipRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWMLI
Low Complexity Region (SEG)
MAGlsrlraaaalqlrqiarsraygsaaaaQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWMLI
Disordered region (IsUnstruct)
*************QLRQIARSRAYGSAAAAQLQYDYDEEC**********************GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWML*
Disordered Region (DISOPRED)
***********************************YD****************************WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP*SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWMLI
Disordered Region (DISEMBL)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWMLI
Disordered Region (DISPRO)
********AAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWMLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLWMLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9ZUU1	284	Probable adenylate kinase	no	no	0.529	0.408	0.525	1e-25
Q8HSW1	288	Adenylate kinase, chlorop	N/A	no	0.456	0.347	0.58	6e-25
A6LLN4	214	Adenylate kinase OS=Therm	yes	no	0.442	0.453	0.383	1e-13
B2A4G2	214	Adenylate kinase OS=Natra	yes	no	0.442	0.453	0.393	2e-13
B7IHW7	214	Adenylate kinase OS=Therm	yes	no	0.442	0.453	0.373	7e-13
P43414	217	Adenylate kinase OS=Strep	yes	no	0.442	0.447	0.393	1e-12
B1VEX6	181	Adenylate kinase OS=Coryn	yes	no	0.442	0.535	0.434	3e-12
Q73NP0	209	Adenylate kinase OS=Trepo	yes	no	0.429	0.449	0.395	4e-12
Q0W1W4	216	Adenylate kinase OS=Uncul	yes	no	0.442	0.449	0.393	5e-12
Q04G65	188	Adenylate kinase OS=Oenoc	yes	no	0.438	0.510	0.364	8e-12

>sp|Q9ZUU1|KADC1_ARATH Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 76/118 (64%), Gaps = 2/118 (1%)

Query: 43  HGQASEPMLRLDSAG--SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100
           H  +  P L    A   +P  R VQWV +G PGV K  YA  LS LL VPHI+ G LVR+
Sbjct: 29  HASSPSPFLHGGGASRVAPKDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRE 88

Query: 101 ELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQA 158
           EL+    L ++++  VN+GKLV +++I  LLSKRLE G  RGESGFILDG PRT  QA
Sbjct: 89  ELASSGPLSQKLSEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQA 146

This small ubiquitous enzyme is essential for maintenance and cell growth.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q8HSW1|KADC_SOLTU Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1

 Score =  114 bits (284), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 68/100 (68%)

Query: 59  PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
           P  + VQWV +G PGV K  YA  LS LL VPHI+ G LVR EL     L KQ+A  VN+
Sbjct: 51  PKAKTVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQ 110

Query: 119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQA 158
           GKLV +++I  LLSKRLE G  +GE+GFILDG PRT  QA
Sbjct: 111 GKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQA 150

This small ubiquitous enzyme is essential for maintenance and cell growth.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A6LLN4|KAD_THEM4 Adenylate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=adk PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  V +G PG  K  YA  L ++L +PHIS G + R+E+S +S L +++ + +  G+LVP
Sbjct: 1   MNIVFLGPPGAGKGTYAKELKEILGIPHISTGDMFREEISAKSELGRKVEDILKRGELVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +D+   ++ +RL +   +   GFILDG PRT  QA +L+
Sbjct: 61  DDLTNVIVKERLSKPDCK--KGFILDGYPRTVAQAKALD 97

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B2A4G2|KAD_NATTJ Adenylate kinase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=adk PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 64/99 (64%), Gaps = 2/99 (2%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A+ LSK L+VPHI+ G + R+ +S  + L K+  + ++ G+LVP
Sbjct: 1   MRIILMGPPGAGKGTQAEKLSKELDVPHIATGDIFRKAVSEGTELGKEAKSYMDAGQLVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +DV+  ++ +RL++       GFILDG PRT  QA +L+
Sbjct: 61  DDVVIGIVEERLKKPDCH--EGFILDGFPRTVTQAEALD 97

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B7IHW7|KAD_THEAB Adenylate kinase OS=Thermosipho africanus (strain TCF52B) GN=adk PE=3 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  V +G PG  K  YA  L ++L +PHIS G + R+ ++ +S L K++   +  G LVP
Sbjct: 1   MNMVFLGPPGAGKGTYAKRLIEMLNIPHISTGDMFREAVASKSELGKKVEEILKRGDLVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +D+  +++  RL +   +  +GFILDG PRT  QA +L+
Sbjct: 61  DDLTNSIVKDRLSKEDCK--NGFILDGFPRTVAQAKALD 97

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Thermosipho africanus (strain TCF52B) (taxid: 484019)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P43414|KAD_STRCO Adenylate kinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=adk PE=3 SV=3

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 2/99 (2%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VL+G PG  K   A  L++ L +PHIS G L R  +S ++ L K   + +N G LVP
Sbjct: 1   MRIVLVGPPGAGKGTQATRLAETLHIPHISTGDLFRANISQQTELGKLAKSYMNAGNLVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           ++V  A+   R+E+     E GF+LDG PR   QA +L+
Sbjct: 61  DEVTIAMAKDRMEQP--DAEGGFLLDGFPRNVSQAEALD 97

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B1VEX6|KAD_CORU7 Adenylate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=adk PE=3 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VL+G PG  K   A  LS  L +PHIS G L R  +S  + L KQ    ++ GKLVP
Sbjct: 1   MRLVLLGPPGAGKGTQAQLLSDALNIPHISTGDLFRANISQGTELGKQAQEYMDAGKLVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
            +V   ++  RLEE      +GF+LDG PRT  QA  LE
Sbjct: 61  TEVTANMVRARLEEA--DAANGFLLDGFPRTIEQADLLE 97

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) (taxid: 504474)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q73NP0|KAD_TREDE Adenylate kinase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=adk PE=3 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  +SK  ++PHIS G L R  +  ++ L K++   ++ G LV +D+
Sbjct: 4   IFLGPPGAGKGTLAFEVSKSYKIPHISTGDLFRAAIKEQTDLGKKVKAVIDSGALVSDDL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             AL+ +RLE    +   GFILDG PRT  QA +LE
Sbjct: 64  TIALVKERLERDDTK--KGFILDGFPRTIAQADALE 97

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) (taxid: 243275)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q0W1W4|KAD_UNCMA Adenylate kinase OS=Uncultured methanogenic archaeon RC-I GN=adk PE=3 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +Q+VL G PG  K   A  LS+ L VPHIS G ++R+ +   +AL  +  + +++G+LVP
Sbjct: 1   MQFVLFGPPGAGKGTQAKFLSEELNVPHISTGDILRENVKKGTALGLKAKSYMDKGELVP 60

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           ++++  L+  RL +   R   GF+LDG PRT  QA +L+
Sbjct: 61  DNLLIDLIKDRLSQPDCR--KGFLLDGFPRTIPQAEALD 97

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Uncultured methanogenic archaeon RC-I (taxid: 351160)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q04G65|KAD_OENOB Adenylate kinase OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) GN=adk PE=3 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 57/96 (59%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V++G PGV K   AD + +  ++PHIS G + R  ++  + L  +  + ++ G LVP+++
Sbjct: 6   VMLGLPGVGKGTNADIMVEDFKLPHISTGDIFRSAMANHTELGDKAKSFMDAGNLVPDEI 65

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              ++++RL E   +   GFILDG PR   QA SLE
Sbjct: 66  TNGIVNERLNEADVKDAGGFILDGYPRNTSQADSLE 101

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Oenococcus oeni (strain ATCC BAA-331 / PSU-1) (taxid: 203123)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
255536957	274	adenylate kinase 1 chloroplast, putative	0.767	0.613	0.636	2e-51
224060231	271	predicted protein [Populus trichocarpa]	0.789	0.638	0.637	1e-50
297828566	266	adenylate kinase family protein [Arabido	0.726	0.597	0.646	2e-48
30678433	263	P-loop containing nucleoside triphosphat	0.721	0.600	0.642	2e-47
6091724	219	putative adenylate kinase [Arabidopsis t	0.721	0.721	0.642	4e-47
225456276	299	PREDICTED: probable adenylate kinase 1,	0.780	0.571	0.622	1e-46
297734390	321	unnamed protein product [Vitis vinifera]	0.730	0.498	0.650	1e-46
225452140	290	PREDICTED: probable adenylate kinase 1,	0.863	0.651	0.577	2e-46
147856242	299	hypothetical protein VITISV_026010 [Viti	0.780	0.571	0.611	5e-46
217072076	265	unknown [Medicago truncatula] gi|3885151	0.767	0.633	0.566	2e-44

>gi|255536957|ref|XP_002509545.1| adenylate kinase 1 chloroplast, putative [Ricinus communis] gi|223549444|gb|EEF50932.1| adenylate kinase 1 chloroplast, putative [Ricinus communis]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/190 (63%), Positives = 135/190 (71%), Gaps = 22/190 (11%)

Query: 1   MAGLSRLRAAAAL-------QLRQIARSRAYGSAAAAQLQYDYDE----------ECDLH 43
           MAGLSRL   AA         LR+I  SRAYGSAAA  +QYDY++            D H
Sbjct: 1   MAGLSRLGLVAAATPPPYLSSLRRILTSRAYGSAAA--IQYDYEDYYSEAEDGYDHQDRH 58

Query: 44  GQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS 103
            +  EP L  DS  +  R GVQWVLIGDPGVKKHVYA+ LSKLLEVPHISMG+L+RQEL+
Sbjct: 59  SRHPEPCL--DSVANWGR-GVQWVLIGDPGVKKHVYAEELSKLLEVPHISMGTLLRQELN 115

Query: 104 PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEF 163
           PRS+LYKQIANAVNEGKLVPE+VIF LLSKR EEGY RGE GFILDGIPRTRIQA  L+ 
Sbjct: 116 PRSSLYKQIANAVNEGKLVPEEVIFGLLSKRFEEGYCRGEKGFILDGIPRTRIQAEILDQ 175

Query: 164 CYTMALAFLF 173
              + L   F
Sbjct: 176 IADIDLIVNF 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060231|ref|XP_002300097.1| predicted protein [Populus trichocarpa] gi|222847355|gb|EEE84902.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/182 (63%), Positives = 132/182 (72%), Gaps = 9/182 (4%)

Query: 1   MAGLSRLRAAAALQLRQIAR---SRAYGSAAAAQ-----LQYDYDEECDLHGQASEPMLR 52
           MA L+RL   AA  LR++ R   SR YGSAAA Q         Y E  + +GQ +     
Sbjct: 1   MAWLNRLAITAAPSLRRVIRFPDSRGYGSAAAVQCDYDYYDDYYSEAVEDYGQLNRLKPN 60

Query: 53  LDS-AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ 111
           L+S AGS   RGVQWVLIGDPG KKHVYA+ LSKLLEVPHISMG+L+RQEL+  S++YKQ
Sbjct: 61  LESVAGSASGRGVQWVLIGDPGAKKHVYAEKLSKLLEVPHISMGTLLRQELNLNSSVYKQ 120

Query: 112 IANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAF 171
           IANAVNEGKLVPEDVIF LLSKRLEEGYYRGE+GFILDGIPRTRIQA  L+    + L  
Sbjct: 121 IANAVNEGKLVPEDVIFGLLSKRLEEGYYRGENGFILDGIPRTRIQAEILDQIADIDLVV 180

Query: 172 LF 173
            F
Sbjct: 181 NF 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828566|ref|XP_002882165.1| adenylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328005|gb|EFH58424.1| adenylate kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 127/164 (77%), Gaps = 5/164 (3%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEEC--DLHGQASEPMLRLDSAGS 58
           MA LSRLR   ++  R  A  R++GSAAA +  YD D+E      G+ +EP L LD  GS
Sbjct: 1   MAWLSRLRGVVSVT-RLAATRRSFGSAAALEFDYDSDDEYLYGDDGRCAEPRLGLD--GS 57

Query: 59  PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
            P RGVQWVL+G PG  +HV+A+ LSKLLEVPHISMGSLVRQEL+PRS+LYK+IA+AVNE
Sbjct: 58  GPDRGVQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNE 117

Query: 119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
            KLVP+ V+FALLSKRLEEGY RGE+GFIL GIPRTR QA +L+
Sbjct: 118 RKLVPKSVVFALLSKRLEEGYLRGETGFILHGIPRTRFQAETLD 161

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678433|ref|NP_186831.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|21928121|gb|AAM78088.1| AT3g01820/F28J7_15 [Arabidopsis thaliana] gi|23308271|gb|AAN18105.1| At3g01820/F28J7_15 [Arabidopsis thaliana] gi|332640199|gb|AEE73720.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 129/165 (78%), Gaps = 7/165 (4%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHG---QASEPMLRLDSAG 57
           MA LSR+R  + +  R  A  R++GSAAA +  YD D+E  L+G   + +EP L LD  G
Sbjct: 1   MAWLSRVRGVSPVT-RLAAIRRSFGSAAALEFDYDSDDEY-LYGDDRRLAEPRLGLD--G 56

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN 117
           S P RGVQWVL+G PG  +HV+A+ LSKLLEVPHISMGSLVRQEL+PRS+LYK+IA+AVN
Sbjct: 57  SGPDRGVQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVN 116

Query: 118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           E KLVP+ V+FALLSKRLEEGY RGE+GFIL GIPRTR QA +L+
Sbjct: 117 ERKLVPKSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLD 161

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6091724|gb|AAF03436.1|AC010797_12 putative adenylate kinase [Arabidopsis thaliana]

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 129/165 (78%), Gaps = 7/165 (4%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHG---QASEPMLRLDSAG 57
           MA LSR+R  + +  R  A  R++GSAAA +  YD D+E  L+G   + +EP L LD  G
Sbjct: 1   MAWLSRVRGVSPVT-RLAAIRRSFGSAAALEFDYDSDDEY-LYGDDRRLAEPRLGLD--G 56

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN 117
           S P RGVQWVL+G PG  +HV+A+ LSKLLEVPHISMGSLVRQEL+PRS+LYK+IA+AVN
Sbjct: 57  SGPDRGVQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVN 116

Query: 118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           E KLVP+ V+FALLSKRLEEGY RGE+GFIL GIPRTR QA +L+
Sbjct: 117 ERKLVPKSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLD 161

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456276|ref|XP_002279733.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/180 (62%), Positives = 133/180 (73%), Gaps = 9/180 (5%)

Query: 1   MAGLSRLRAAA--ALQLRQIARSRAYGSAAAAQLQY--DYDEECD---LHGQASEPMLRL 53
           MAGL RL+ AA   L LR++  SR++G+AAAAQ Q+  DY  E +   L G A+ PM+  
Sbjct: 1   MAGLCRLKLAAPLLLHLRRLTLSRSFGAAAAAQPQFNVDYHPESEYEPLRGSAAAPMV-- 58

Query: 54  DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIA 113
           DS GS P RGVQWV IG+PG KKHVYA  LSKLL+VPHIS+ SLVRQ+L PRS+LY+QIA
Sbjct: 59  DSEGSAPSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIA 118

Query: 114 NAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLF 173
           NAVN GKLVPE+VIF LLS+RLE GYYRGE GFILDGIPR+  QA  L+    + L   F
Sbjct: 119 NAVNNGKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNF 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734390|emb|CBI15637.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 130/169 (76%), Gaps = 9/169 (5%)

Query: 1   MAGLSRLRAAA--ALQLRQIARSRAYGSAAAAQLQY--DYDEECD---LHGQASEPMLRL 53
           MAGL RL+ AA   L LR++  SR++G+AAAAQ Q+  DY  E +   L G A+ PM+  
Sbjct: 52  MAGLCRLKLAAPLLLHLRRLTLSRSFGAAAAAQPQFNVDYHPESEYEPLRGSAAAPMV-- 109

Query: 54  DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIA 113
           DS GS P RGVQWV IG+PG KKHVYA  LSKLL+VPHIS+ SLVRQ+L PRS+LY+QIA
Sbjct: 110 DSEGSAPSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIA 169

Query: 114 NAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           NAVN GKLVPE+VIF LLS+RLE GYYRGE GFILDGIPR+  QA  L+
Sbjct: 170 NAVNNGKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILD 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452140|ref|XP_002263142.1| PREDICTED: probable adenylate kinase 1, chloroplastic [Vitis vinifera] gi|296090237|emb|CBI40056.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 134/199 (67%), Gaps = 10/199 (5%)

Query: 1   MAGLSRLRAAAALQLRQ---IARSRAYGSAAAAQLQYDYDEECDLHGQASEPML-RLDSA 56
           MA L RL   A L LR+   +   R YGSAAAAQ+ YDY +  +         L R DS 
Sbjct: 1   MAKLCRLSTVAPLFLRRRIGVLPKREYGSAAAAQVDYDYYDYEEEEEVEVYRKLARADSE 60

Query: 57  GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV 116
           G    RGV WV+IG+PG KKHVYA+ LS+LL+VPHISMG+LVRQELSP S+LYKQIANAV
Sbjct: 61  GCVSGRGVHWVIIGEPGAKKHVYAERLSRLLQVPHISMGTLVRQELSPLSSLYKQIANAV 120

Query: 117 NEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFL 176
           N+GKLVPED+IF LLSKRLEEGY RGE+GFILDGIPRTRIQA  L+    + L   F   
Sbjct: 121 NQGKLVPEDIIFGLLSKRLEEGYCRGETGFILDGIPRTRIQAEILDQIADIDLVVNFKCT 180

Query: 177 YGCCVIIGSVILNEQVDGS 195
             C      ++ N   DGS
Sbjct: 181 GDC------LVRNHPQDGS 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856242|emb|CAN81789.1| hypothetical protein VITISV_026010 [Vitis vinifera]

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 132/180 (73%), Gaps = 9/180 (5%)

Query: 1   MAGLSRLR--AAAALQLRQIARSRAYGSAAAAQLQY--DYDEECD---LHGQASEPMLRL 53
           MAGL RL+  A   L LR++  SR++G+AAAAQ Q+  DY  E +   L G A+ PM+  
Sbjct: 1   MAGLCRLKLGAPLLLHLRRLTLSRSFGAAAAAQPQFKVDYHPESEYEPLRGSATAPMV-- 58

Query: 54  DSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIA 113
           DS GS P RGVQWV IG+PG KKHVYA  LSKLL+VPHIS+ SLVRQ+L PRS+LY+QIA
Sbjct: 59  DSEGSAPSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIA 118

Query: 114 NAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLF 173
           NA+N GKLVPE+VIF LLS+RLE GYYRGE GFILDGIPR+  QA  L+    + L   F
Sbjct: 119 NAMNNGKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEILDQLAVIDLVVNF 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072076|gb|ACJ84398.1| unknown [Medicago truncatula] gi|388515105|gb|AFK45614.1| unknown [Medicago truncatula]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/173 (56%), Positives = 129/173 (74%), Gaps = 5/173 (2%)

Query: 1   MAGLSRLRAAAALQLRQIARSRAYGSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPP 60
           M+ ++RLRA +   L+ +  +R +GSAAA  LQY YD++ D     + P   LD+ GS P
Sbjct: 1   MSAIARLRAISP-SLKTL--NRPFGSAAA--LQYSYDDDEDEDLNYNAPRGMLDTEGSAP 55

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
            RG+QWV+IG+PG K+HV+A+ LSKLLEVPHISM SL+ QEL+PRS+LY+QIA A++ GK
Sbjct: 56  ERGIQWVMIGEPGAKRHVFAERLSKLLEVPHISMASLLHQELNPRSSLYQQIAGALDHGK 115

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLF 173
           +VPE++I ALLSKRLE+GY RGE+GFILDGIPRTR+QA  L     + L   F
Sbjct: 116 IVPEEIILALLSKRLEDGYDRGETGFILDGIPRTRMQAEILNHVAHVDLVVNF 168

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2082329	263	AT3G01820 [Arabidopsis thalian	0.589	0.490	0.681	4e-42
TAIR|locus:2049842	284	ADK "adenosine kinase" [Arabid	0.529	0.408	0.525	1.8e-25
TAIR|locus:2056098	295	AT2G39270 [Arabidopsis thalian	0.570	0.423	0.492	7.6e-25
CGD|CAL0002732	279	orf19.5195 [Candida albicans (	0.497	0.390	0.362	1.8e-12
FB|FBgn0022708	240	Adk2 "Adenylate kinase-2" [Dro	0.465	0.425	0.336	1e-11
UNIPROTKB|F1NJ73	189	AK2 "Uncharacterized protein"	0.497	0.576	0.333	1.3e-11
UNIPROTKB|P08166	241	AK2 "Adenylate kinase 2, mitoc	0.452	0.410	0.366	1.7e-11
POMBASE|SPAC4G9.03	220	adk1 "adenylate kinase Adk1" [	0.447	0.445	0.303	2.8e-11
SGD|S000001507	204	URA6 "Uridylate kinase" [Sacch	0.484	0.519	0.342	2.8e-11
UNIPROTKB|A4RD93	276	ADK1 "Adenylate kinase 1" [Mag	0.479	0.380	0.292	4.2e-11

TAIR|locus:2082329 AT3G01820 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 92/135 (68%), Positives = 112/135 (82%)

Query:    32 LQYDYDEECD-LHG---QASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87
             L++DYD + + L+G   + +EP L LD  GS P RGVQWVL+G PG  +HV+A+ LSKLL
Sbjct:    29 LEFDYDSDDEYLYGDDRRLAEPRLGLD--GSGPDRGVQWVLMGAPGAWRHVFAERLSKLL 86

Query:    88 EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI 147
             EVPHISMGSLVRQEL+PRS+LYK+IA+AVNE KLVP+ V+FALLSKRLEEGY RGE+GFI
Sbjct:    87 EVPHISMGSLVRQELNPRSSLYKEIASAVNERKLVPKSVVFALLSKRLEEGYARGETGFI 146

Query:   148 LDGIPRTRIQAVSLE 162
             L GIPRTR QA +L+
Sbjct:   147 LHGIPRTRFQAETLD 161

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2049842 ADK "adenosine kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 62/118 (52%), Positives = 76/118 (64%)

Query:    43 HGQASEPMLRLDSAG--SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100
             H  +  P L    A   +P  R VQWV +G PGV K  YA  LS LL VPHI+ G LVR+
Sbjct:    29 HASSPSPFLHGGGASRVAPKDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRE 88

Query:   101 ELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQA 158
             EL+    L ++++  VN+GKLV +++I  LLSKRLE G  RGESGFILDG PRT  QA
Sbjct:    89 ELASSGPLSQKLSEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQA 146

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2056098 AT2G39270 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 63/128 (49%), Positives = 80/128 (62%)

Query:    37 DEECDLHGQASEPMLRLDSAGSPPRRG--VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94
             D + DL  +A+  + +  S  + P +G    WV +G PGV K  YA  LS LL VPHI+ 
Sbjct:    37 DPKIDLE-EAAAQLGKSSSTSTSPYKGRNFHWVFLGCPGVGKGTYASRLSSLLGVPHIAT 95

Query:    95 GSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRT 154
             G LVR+ELS    L  Q+   VN GKLVP++ I +LLSKRL+ G  +GESG+ILDG PRT
Sbjct:    96 GDLVREELSSSGLLSSQLKELVNHGKLVPDEFIISLLSKRLQAGKDKGESGYILDGFPRT 155

Query:   155 RIQAVSLE 162
               QA  LE
Sbjct:   156 VTQAEILE 163

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

CGD|CAL0002732 orf19.5195 [Candida albicans (taxid:5476)]

 Score = 168 (64.2 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 41/113 (36%), Positives = 66/113 (58%)

Query:    68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDV 126
             ++G PG  K   +D L K     H+S G L+R E + P S   + IA  + EG++VP++V
Sbjct:    95 VLGGPGSGKGTQSDKLVKEKGFVHLSAGDLLRAEQNRPGSKYGELIAKYIREGEIVPQEV 154

Query:   127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGC 179
               ALL + ++E Y +G++ F++DG PR   QA++ E   T+A +   LF + C
Sbjct:   155 TVALLKQAIKENYEQGKTKFLVDGFPRKMDQALTFE--NTIAKSAFTLF-FEC 204

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

FB|FBgn0022708 Adk2 "Adenylate kinase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 35/104 (33%), Positives = 59/104 (56%)

Query:    59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE 118
             P   G+  +L+G PG  K   A  L +   V H+S G ++R E+S  S L  ++   ++ 
Sbjct:    14 PENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSGSKLGAELKKVMDA 73

Query:   119 GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             GKLV +D++  ++   L++   +  +GF+LDG PRT +QA  L+
Sbjct:    74 GKLVSDDLVVDMIDSNLDKPECK--NGFLLDGFPRTVVQAEKLD 115

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0004017 "adenylate kinase activity" evidence=ISS;IMP;IDA

GO:0006172 "ADP biosynthetic process" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NJ73 AK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/111 (33%), Positives = 64/111 (57%)

Query:    52 RLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ 111
             R  + G+  RRG++ VL+G PG  K   A  L++   V H++ G ++R  ++  S L K+
Sbjct:    16 RGQAPGTGLRRGIRAVLLGPPGAGKGTQAPKLAETYCVCHLATGDMLRAMVASGSELGKR 75

Query:   112 IANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             +   ++ GKLV ++++  L+   L+    +  +GF+LDG PRT  QA  L+
Sbjct:    76 LKETMDSGKLVSDEMVVELIENNLDTPPCK--NGFLLDGFPRTVKQAEMLD 124

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

UNIPROTKB|P08166 AK2 "Adenylate kinase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 37/101 (36%), Positives = 60/101 (59%)

Query:    62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
             +GV+ VL+G PG  K   A  L+K   V H++ G ++R  ++  S L K++   ++ GKL
Sbjct:    16 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 75

Query:   122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             V ++++  L+ K LE    +  +GF+LDG PRT  QA  L+
Sbjct:    76 VSDEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQAEMLD 114

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

POMBASE|SPAC4G9.03 adk1 "adenylate kinase Adk1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/99 (30%), Positives = 58/99 (58%)

Query:    63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV 122
             G++ +L+G PG  K   A N+ K   + H++ G ++R +++ ++ L K+    +++G LV
Sbjct:     3 GMRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLV 62

Query:   123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
              +D++  ++   +       ++GFILDG PRT +QA  L
Sbjct:    63 SDDIVTGMIKDEILNNP-ECKNGFILDGFPRTVVQAEKL 100

GO:0004017 "adenylate kinase activity" evidence=IGI

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006172 "ADP biosynthetic process" evidence=IGI

GO:0046939 "nucleotide phosphorylation" evidence=IEA

SGD|S000001507 URA6 "Uridylate kinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 37/108 (34%), Positives = 56/108 (51%)

Query:    56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ-IAN 114
             A SP +  V +VL G PG  K    + L K     H+S G L+R E     + Y + I N
Sbjct:    10 AFSPDQVSVIFVL-GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKN 68

Query:   115 AVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              + EG++VP+++  ALL   + +     +  F++DG PR   QA+S E
Sbjct:    69 CIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFE 116

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA;IDA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IGI;IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

UNIPROTKB|A4RD93 ADK1 "Adenylate kinase 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 156 (60.0 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 31/106 (29%), Positives = 60/106 (56%)

Query:    57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV 116
             GS   + ++ +LIG PG  K   A  + +     H++ G ++R +++ ++ L ++    +
Sbjct:    34 GSSTAQEIRMILIGPPGAGKGTQAPKIKEKFSCCHLATGDMLRSQVAKKTPLGREAKKIM 93

Query:   117 NEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             ++G LV +D++  ++ + L+      + GFILDG PRT  QA SL+
Sbjct:    94 DQGGLVSDDIVIGMIKEELDTNV-ECKGGFILDGFPRTVPQAQSLD 138

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	7e-39
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	2e-31
TIGR01351	210	TIGR01351, adk, adenylate kinase	2e-22
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	1e-21
pfam00406	186	pfam00406, ADK, Adenylate kinase	6e-18
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-17
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	7e-17
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	9e-15
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	2e-12
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	1e-11
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	6e-11
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	8e-11
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	9e-11
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	4e-10
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	6e-09
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	1e-08
PLN02674	244	PLN02674, PLN02674, adenylate kinase	1e-08
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	2e-08
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	3e-07
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	5e-07
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	1e-05

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  134 bits (339), Expect = 7e-39
 Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 6/127 (4%)

Query: 41  DLHGQASEPMLRLDSAGSPPR-----RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95
           +   +++   L  D A +  R     R V WV +G PGV K  YA  LSKLL VPHI+ G
Sbjct: 3   ERDAKSTSA-LADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATG 61

Query: 96  SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTR 155
            LVR+E+     L  Q+   VN+GKLVP+++IF+LLSKRLE G   GESGFILDG PRT 
Sbjct: 62  DLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTV 121

Query: 156 IQAVSLE 162
            QA  LE
Sbjct: 122 RQAEILE 128

Length = 261

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  113 bits (284), Expect = 2e-31
 Identities = 39/98 (39%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           + +L+G PG  K   A+ L+K   +PHIS G L+R+E++  + L K+    ++ GKLVP+
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +++  LL +RL++     + GFILDG PRT  QA +L+
Sbjct: 61  EIVIKLLKERLKKPD--CKKGFILDGFPRTVDQAEALD 96

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score = 90.4 bits (225), Expect = 2e-22
 Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           + VL+G PG  K   A  +++   +PHIS G L+R E+   + L K+    + +G+LVP+
Sbjct: 1   RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +++  L+ +RL +     E+GFILDG PRT  QA +L+
Sbjct: 61  EIVNQLVKERLTQNQDN-ENGFILDGFPRTLSQAEALD 97

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 88.7 bits (220), Expect = 1e-21
 Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 6/104 (5%)

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
           +  ++ VL G PGV K  +A+ LSK   + HI+MG+++R+E+  ++ + K+I   V  G 
Sbjct: 4   KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGN 63

Query: 121 LVPEDVIFALLSKRLEE---GYYRGESGFILDGIPRTRIQAVSL 161
           LVP++++ A++   + +     ++G   FILDG PR   Q   L
Sbjct: 64  LVPDNLVIAIVKDEIAKVTDDCFKG---FILDGFPRNLKQCKEL 104

Length = 229

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           L+G PG  K   A+ + +   +PH+S G L+R E+   + L K+    +++G+LVP++V+
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             L+ +RLE+     ++GF+LDG PRT  QA +LE
Sbjct: 61  IGLVKERLEQN--DCKNGFLLDGFPRTVPQAEALE 93

Length = 186

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 34/92 (36%), Positives = 60/92 (65%), Gaps = 2/92 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +++G PG  K   A  L+K L +PH+  G ++R  ++ R+ L ++I   +++G+LVP+++
Sbjct: 4   LILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQA 158
           +  L+ +RL+E     ++GFILDG PRT  QA
Sbjct: 64  VNGLVKERLDEA--DCKAGFILDGFPRTLCQA 93

Length = 178

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score = 74.8 bits (184), Expect = 7e-17
 Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L++ L +PHIS G ++RQ +  ++ L  +    +++G+LVP+ +
Sbjct: 5   IFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQL 64

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  L+ +RL++      +G+ILDG PR   QA  L+
Sbjct: 65  VLDLVQERLQQP--DAANGWILDGFPRKVTQAAFLD 98

Length = 184

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score = 69.8 bits (172), Expect = 9e-15
 Identities = 32/96 (33%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  +++   +PHIS G ++R  +   + L K+  + ++ G+LVP+++
Sbjct: 4   ILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  L+ +RL +     ++GF+LDG PRT  QA +L+
Sbjct: 64  VIGLVKERLAQPDC--KNGFLLDGFPRTIPQAEALD 97

Length = 215

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 47  SEPMLRLDSAGSPPRRGVQWV--LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP 104
           S  ++ L+  GS  +    ++  ++G PG  K    + + +     H+S G L+R+E++ 
Sbjct: 25  STEIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS 84

Query: 105 RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
            S     I N + EGK+VP +V   L+ K +E       + F++DG PRT    ++ E
Sbjct: 85  NSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS---DNNKFLIDGFPRTEENRIAFE 139

Length = 234

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score = 60.8 bits (147), Expect = 1e-11
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L + L +P IS G ++R+ +  ++A+  +    ++ G LVP+ V
Sbjct: 5   IFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSV 64

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  ++  R+ E     ++GF+LDG PRT  QA +L+
Sbjct: 65  VIGIIKDRIREA--DCKNGFLLDGFPRTVEQADALD 98

Length = 186

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V +G PG  K   A  LS  L   HIS G L R+ +   + L K+I   V  G+LVP+ +
Sbjct: 4   VFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              ++  ++     +    FILDG PR   QA +L+
Sbjct: 64  TIKIVEDKINT--IKNNDNFILDGFPRNINQAKALD 97

Length = 211

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 91  HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDG 150
           HIS G L+R E+S  + + K+    +N G+LVP++++ A+++ RL     + E G++LDG
Sbjct: 25  HISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAK-EKGWLLDG 83

Query: 151 IPRTRIQAVSLE 162
            PR+  QA SLE
Sbjct: 84  YPRSFAQAQSLE 95

Length = 505

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L     + H+S G L+R E++  SAL ++    +N G+LV + +
Sbjct: 6   LFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDAL 65

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           + A++  +L+        G++LDG PRT  QA +LE
Sbjct: 66  VLAIVESQLKA---LNSGGWLLDGFPRTVAQAEALE 98

Length = 183

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           V +VL G PG  K      + +     H+S G L+R E+   S   + I + +  GK+VP
Sbjct: 1   VVFVL-GGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVP 59

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPR 153
            +V   LL   ++     G   F++DG PR
Sbjct: 60  SEVTVKLLKNAIQAD---GSKKFLIDGFPR 86

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L G P   K   A  L +   +  +S G ++R  ++  S L +++   ++ G+LV +++
Sbjct: 4   ILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           + AL+ +RL E       G I DG PRT  QA +L+
Sbjct: 64  VIALIEERLPEA--EAAGGAIFDGFPRTVAQAEALD 97

Length = 188

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 83  LSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142
           + K  ++ HI  G++ R+ +   + L K+    ++ G LVP+D+   ++ + L++    G
Sbjct: 20  VKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQ---DG 76

Query: 143 ESGFILDGIPRTRIQAVSL 161
           ++G++LDG PR ++QA  L
Sbjct: 77  KNGWLLDGFPRNKVQAEKL 95

Length = 223

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 10/138 (7%)

Query: 25  GSAAAAQLQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLS 84
            SAAAA L     E+       +E + R+  +  P +R    +LIG PG  K   +  + 
Sbjct: 1   SSAAAANL-----EDVPSVDLMTELLRRMKCSSKPDKR---LILIGPPGSGKGTQSPIIK 52

Query: 85  KLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144
               + H++ G ++R  ++ ++ L  +   A+++G+LV +D++  ++ + +++     + 
Sbjct: 53  DEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP--SCQK 110

Query: 145 GFILDGIPRTRIQAVSLE 162
           GFILDG PRT +QA  L+
Sbjct: 111 GFILDGFPRTVVQAQKLD 128

Length = 244

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A+ L++ L +  +S G ++R  ++  + L ++    +  G LVP+++
Sbjct: 10  IFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDEL 69

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           I AL+   L           I DG PRT  QA +L+
Sbjct: 70  ILALIRDELAG---MEPVRVIFDGFPRTLAQAEALD 102

Length = 191

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + + +     H+S G L+R E++  S   KQ+   +  G LVP D +
Sbjct: 8   IVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTV 67

Query: 128 FALLSKRLEEGYYRGES-GFILDGIPRTRIQAVSLE 162
             LL   +      G S GF++DG PR   Q    E
Sbjct: 68  LDLLKDAMVAA--LGTSKGFLIDGYPREVKQGEEFE 101

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  L +   +  +S G ++R  ++  + +  +  + +  G LVP++V
Sbjct: 4   ILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  ++S R+E+      +GFILDG PRT  QA +L+
Sbjct: 64  VVGIISDRIEQP--DAANGFILDGFPRTVPQAEALD 97

Length = 333

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR----QELSPRSALYKQIANAVNEGKLV 122
           +L+G PG  K   + NL++   V H++ G  +R     ++S     Y      ++ G+LV
Sbjct: 7   LLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELV 66

Query: 123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           P+ V+  ++ + L +       GF+LDG PR   QA  LE
Sbjct: 67  PDAVVNEIVEEALSDA-----DGFVLDGYPRNLEQAEYLE 101

Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PLN02459	261	probable adenylate kinase	100.0
PLN02674	244	adenylate kinase	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PRK14529	223	adenylate kinase; Provisional	99.98
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.97
PRK14526	211	adenylate kinase; Provisional	99.97
PRK00279	215	adk adenylate kinase; Reviewed	99.97
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.95
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.95
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.95
PRK13808	333	adenylate kinase; Provisional	99.95
PRK14530	215	adenylate kinase; Provisional	99.95
PRK14532	188	adenylate kinase; Provisional	99.94
PRK14531	183	adenylate kinase; Provisional	99.94
PRK14528	186	adenylate kinase; Provisional	99.93
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.93
PLN02842	505	nucleotide kinase	99.93
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.93
PLN02200	234	adenylate kinase family protein	99.92
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.92
PRK02496	184	adk adenylate kinase; Provisional	99.92
PRK14527	191	adenylate kinase; Provisional	99.91
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.88
PRK01184	184	hypothetical protein; Provisional	99.65
PRK08356	195	hypothetical protein; Provisional	99.62
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.58
PRK06217	183	hypothetical protein; Validated	99.58
PRK08118	167	topology modulation protein; Reviewed	99.57
PRK03839	180	putative kinase; Provisional	99.55
PRK07261	171	topology modulation protein; Provisional	99.42
PRK13973	213	thymidylate kinase; Provisional	99.42
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.41
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.4
PRK13949	169	shikimate kinase; Provisional	99.4
PRK00625	173	shikimate kinase; Provisional	99.36
PRK13974	212	thymidylate kinase; Provisional	99.35
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.34
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.32
PHA02530	300	pseT polynucleotide kinase; Provisional	99.31
PRK08233	182	hypothetical protein; Provisional	99.31
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.31
PRK04182	180	cytidylate kinase; Provisional	99.3
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.3
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.29
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.29
PRK13947	171	shikimate kinase; Provisional	99.26
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.25
PRK04040	188	adenylate kinase; Provisional	99.24
PRK13975	196	thymidylate kinase; Provisional	99.23
PRK06762	166	hypothetical protein; Provisional	99.22
PLN02924	220	thymidylate kinase	99.22
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.22
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.22
PRK13946	184	shikimate kinase; Provisional	99.21
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.2
PRK13948	182	shikimate kinase; Provisional	99.2
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.2
PRK00698	205	tmk thymidylate kinase; Validated	99.19
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.19
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.17
PRK03731	171	aroL shikimate kinase II; Reviewed	99.17
PRK00131	175	aroK shikimate kinase; Reviewed	99.16
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.15
PLN02422	232	dephospho-CoA kinase	99.14
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.13
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.12
PRK06547	172	hypothetical protein; Provisional	99.11
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.1
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.1
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.09
PTZ00451	244	dephospho-CoA kinase; Provisional	99.09
PRK13976	209	thymidylate kinase; Provisional	99.08
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.06
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.04
PRK07933	213	thymidylate kinase; Validated	99.02
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.02
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.01
PRK05057	172	aroK shikimate kinase I; Reviewed	99.0
PLN02199	303	shikimate kinase	98.98
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.97
PRK05541	176	adenylylsulfate kinase; Provisional	98.95
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.95
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.94
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.93
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.92
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.92
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.92
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.89
PRK09825	176	idnK D-gluconate kinase; Provisional	98.88
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.88
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.83
PRK11545	163	gntK gluconate kinase 1; Provisional	98.8
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	98.8
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.79
PRK05480	209	uridine/cytidine kinase; Provisional	98.75
PRK06696	223	uridine kinase; Validated	98.75
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.72
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.71
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.7
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.7
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.69
PRK07667	193	uridine kinase; Provisional	98.69
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.68
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.66
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.65
PRK12338	319	hypothetical protein; Provisional	98.65
PHA03132	580	thymidine kinase; Provisional	98.64
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.64
PRK00889	175	adenylylsulfate kinase; Provisional	98.61
PRK00023	225	cmk cytidylate kinase; Provisional	98.61
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.6
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	98.6
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	98.59
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.54
COG0645	170	Predicted kinase [General function prediction only	98.53
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.51
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.51
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.49
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.48
COG4639	168	Predicted kinase [General function prediction only	98.48
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.47
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.46
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.45
PTZ00301	210	uridine kinase; Provisional	98.44
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.43
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.42
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.42
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.39
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.39
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.36
PRK07429	327	phosphoribulokinase; Provisional	98.35
PLN02348	395	phosphoribulokinase	98.34
PRK03846	198	adenylylsulfate kinase; Provisional	98.32
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.32
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.28
PRK05439	311	pantothenate kinase; Provisional	98.28
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.27
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.27
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.27
PRK00300	205	gmk guanylate kinase; Provisional	98.26
PHA00729	226	NTP-binding motif containing protein	98.26
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.25
PRK14738	206	gmk guanylate kinase; Provisional	98.23
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.22
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.22
PRK14737	186	gmk guanylate kinase; Provisional	98.16
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.14
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.12
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.1
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.1
PLN02165	334	adenylate isopentenyltransferase	98.1
PRK15453	290	phosphoribulokinase; Provisional	98.08
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.07
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.05
PF00004	132	AAA: ATPase family associated with various cellula	98.02
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.96
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.96
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.95
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	97.83
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.8
CHL00181	287	cbbX CbbX; Provisional	97.77
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.73
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.73
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.72
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.7
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.65
PLN02840	421	tRNA dimethylallyltransferase	97.65
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.63
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.61
smart00382	148	AAA ATPases associated with a variety of cellular	97.59
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.55
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.55
PHA03136	378	thymidine kinase; Provisional	97.55
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.54
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.52
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.51
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.51
PLN02318	656	phosphoribulokinase/uridine kinase	97.5
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.5
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.49
PF05729	166	NACHT: NACHT domain	97.47
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.45
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.44
PRK09169	2316	hypothetical protein; Validated	97.44
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.44
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.41
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.4
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.38
PLN02748	468	tRNA dimethylallyltransferase	97.34
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.33
COG1660	286	Predicted P-loop-containing kinase [General functi	97.33
PRK06761	282	hypothetical protein; Provisional	97.28
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.25
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.24
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.2
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.19
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.19
PRK14974	336	cell division protein FtsY; Provisional	97.16
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.16
CHL00195	489	ycf46 Ycf46; Provisional	97.16
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.16
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.14
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.13
PRK12377	248	putative replication protein; Provisional	97.09
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.08
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.08
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.04
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.03
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.03
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.01
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.01
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.0
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.0
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.0
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.99
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.99
PRK04195	482	replication factor C large subunit; Provisional	96.98
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.96
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.96
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.96
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.96
PRK04328	249	hypothetical protein; Provisional	96.95
TIGR02533	486	type_II_gspE general secretory pathway protein E.	96.95
PHA02244	383	ATPase-like protein	96.93
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.89
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.88
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.87
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.87
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.87
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.83
PF13173	128	AAA_14: AAA domain	96.82
PLN02796	347	D-glycerate 3-kinase	96.82
PF13245	76	AAA_19: Part of AAA domain	96.81
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	96.81
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.8
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	96.8
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.78
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.78
PRK13342	413	recombination factor protein RarA; Reviewed	96.76
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.73
CHL00176	638	ftsH cell division protein; Validated	96.73
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.73
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.73
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.7
TIGR00959	428	ffh signal recognition particle protein. This mode	96.7
PRK09087	226	hypothetical protein; Validated	96.7
PRK06067	234	flagellar accessory protein FlaH; Validated	96.69
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.69
PRK10436	462	hypothetical protein; Provisional	96.68
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	96.68
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.66
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.66
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.66
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.65
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.64
PRK10867	433	signal recognition particle protein; Provisional	96.64
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.63
PF07726	131	AAA_3: ATPase family associated with various cellu	96.63
PRK13695	174	putative NTPase; Provisional	96.62
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.61
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.61
PLN02772	398	guanylate kinase	96.61
PRK06620	214	hypothetical protein; Validated	96.6
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.59
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.58
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.58
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.57
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.56
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.56
PHA03134	340	thymidine kinase; Provisional	96.56
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.55
COG3709	192	Uncharacterized component of phosphonate metabolis	96.54
PLN03046	460	D-glycerate 3-kinase; Provisional	96.54
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.54
PRK06526	254	transposase; Provisional	96.53
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.53
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.5
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.48
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.48
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.47
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.47
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.45
COG1855	604	ATPase (PilT family) [General function prediction	96.45
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.43
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.43
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.43
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.43
PLN03025	319	replication factor C subunit; Provisional	96.42
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.42
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.41
COG2087	175	CobU Adenosyl cobinamide kinase/adenosyl cobinamid	96.41
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.4
PRK12402	337	replication factor C small subunit 2; Reviewed	96.4
PRK06893	229	DNA replication initiation factor; Validated	96.38
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.37
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.37
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.36
PHA02544	316	44 clamp loader, small subunit; Provisional	96.35
PRK08084	235	DNA replication initiation factor; Provisional	96.34
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.33
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.33
PRK09183	259	transposase/IS protein; Provisional	96.31
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	96.3
PRK06921	266	hypothetical protein; Provisional	96.3
CHL00206	2281	ycf2 Ycf2; Provisional	96.3
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.3
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.3
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.29
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.26
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.26
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.25
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.25
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.24
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	96.24
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.23
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.23
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.23
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.23
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.21
PRK10416	318	signal recognition particle-docking protein FtsY;	96.21
PRK05973	237	replicative DNA helicase; Provisional	96.2
PRK08181	269	transposase; Validated	96.19
COG0714	329	MoxR-like ATPases [General function prediction onl	96.19
PF13479	213	AAA_24: AAA domain	96.18
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.18
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.17
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.17
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.15
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.14
PRK13341	725	recombination factor protein RarA/unknown domain f	96.13
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.13
PRK04296	190	thymidine kinase; Provisional	96.13
PHA03135	343	thymidine kinase; Provisional	96.12
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.11
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.09
KOG1533	290	consensus Predicted GTPase [General function predi	96.09
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.07
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.06
PRK15455	644	PrkA family serine protein kinase; Provisional	96.06
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.06
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.03
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.01
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.01
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.0
cd01394	218	radB RadB. The archaeal protein radB shares simila	95.97
PRK09302	509	circadian clock protein KaiC; Reviewed	95.96
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.95
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.95
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	95.94
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	95.93
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	95.93
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.93
PRK13768	253	GTPase; Provisional	95.93
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.93
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	95.93
PHA02624	647	large T antigen; Provisional	95.92
PRK09302	509	circadian clock protein KaiC; Reviewed	95.92
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.91
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	95.91
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	95.91
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	95.91
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	95.9
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	95.9
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.89
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.89
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	95.88
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	95.88
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.87
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	95.87
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	95.87
PRK07952	244	DNA replication protein DnaC; Validated	95.86
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.85
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.85
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	95.85
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.84
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	95.83
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	95.83
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	95.83
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.82
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.8
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	95.8
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.79
PRK10646	153	ADP-binding protein; Provisional	95.78
COG1484	254	DnaC DNA replication protein [DNA replication, rec	95.78
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.78
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.77
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	95.76
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.76
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.76
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.75
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.74
PTZ00202	550	tuzin; Provisional	95.74
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.74
PRK06835	329	DNA replication protein DnaC; Validated	95.72
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	95.72
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.71
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	95.71
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.71
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.71
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	95.71
COG3911	183	Predicted ATPase [General function prediction only	95.7
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.69
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	95.69
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	95.68
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.67
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.67
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	95.66
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.66
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	95.66
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.65
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	95.65
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	95.65
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.64
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.64
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.64
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	95.63
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.63
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.62
PRK08116	268	hypothetical protein; Validated	95.62
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.62
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.62
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.61
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.61
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.6
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	95.6
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.6
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	95.6
cd03116	159	MobB Molybdenum is an essential trace element in t	95.6
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.59
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	95.59
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	95.58
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.58
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.58
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	95.58
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.57
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.57
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	95.57
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.56
CHL00095	821	clpC Clp protease ATP binding subunit	95.56
COG4240	300	Predicted kinase [General function prediction only	95.56
cd01128	249	rho_factor Transcription termination factor rho is	95.56
KOG0736	953	consensus Peroxisome assembly factor 2 containing	95.55
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.54
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.54
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.53
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	95.53
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.53
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.52
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.52
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.52
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.52
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	95.51
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	95.51
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	95.51
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	95.5
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.5
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.5
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	95.5
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.5
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.49
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.49
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.49
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.49
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.48
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.47
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	95.47
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.47
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.46
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	95.46
cd03246	173	ABCC_Protease_Secretion This family represents the	95.46
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.45
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.45
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.45
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.45
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.44
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.44
PTZ00035	337	Rad51 protein; Provisional	95.44
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.43
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.42
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.42
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.42
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.42
PHA03133	368	thymidine kinase; Provisional	95.42
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.41
PRK10865	857	protein disaggregation chaperone; Provisional	95.41
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.4
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.4
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.39
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.39
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.39
PRK05642	234	DNA replication initiation factor; Validated	95.38
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	95.37
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.37
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.36
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	95.36
PRK10908	222	cell division protein FtsE; Provisional	95.36
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.36
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.35
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.35
cd03114	148	ArgK-like The function of this protein family is u	95.35

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=3.7e-33  Score=241.89  Aligned_cols=140  Identities=46%  Similarity=0.691  Sum_probs=131.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++++|+|+|||||||||+|+.|+++||++||++++++|+++..++++++.+++++++|.++|++++..++.++|.+....
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            55789999999999999999999999999999999999999999999999999999999999999999999999874223


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccccc
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLC  208 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~  208 (219)
                      ...|||||||||+..|++.|+....++.||+|+++++++       ++|+.+|++|+.||+.||..+
T Consensus       108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l-------~~Rl~gR~~~~~~g~~Yn~~~  167 (261)
T PLN02459        108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVL-------VEKCLGRRICSECGKNFNVAD  167 (261)
T ss_pred             CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHhhccccccccCccccccc
Confidence            468999999999999999999887899999999999999       999999999999999999875

>PLN02674 adenylate kinase

Probab=100.00  E-value=3.8e-33  Score=240.22  Aligned_cols=146  Identities=20%  Similarity=0.267  Sum_probs=133.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++++|+|+|+|||||||+|++|+++||++|||+||++|+++..++++|+.+++++++|+++|++++..++.+++.+..  
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~--  107 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS--  107 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC--
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999998764  


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc---------
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL---------  207 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~---------  207 (219)
                      ...|||+|||||+..|++.|+..     ..+|.||+|++|++++       ++|+..|++|+.||+.||..         
T Consensus       108 ~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l-------~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~  180 (244)
T PLN02674        108 CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAIL-------EERITGRWIHPSSGRTYHTKFAPPKVPGV  180 (244)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhccccccccCCccccccCCCcccCc
Confidence            35899999999999999998764     3699999999999999       99999999999999998876         


Q ss_pred             chhhhhhhh
Q 027791          208 CRKFLIKLW  216 (219)
Q Consensus       208 ~~~~~~~~~  216 (219)
                      |..||..|+
T Consensus       181 ~~~~g~~L~  189 (244)
T PLN02674        181 DDVTGEPLI  189 (244)
T ss_pred             ccccCCccc
Confidence            455666654

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=5.9e-32  Score=231.16  Aligned_cols=139  Identities=29%  Similarity=0.478  Sum_probs=129.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .+++|+|+|||||||||+|+.|+++||++||++|+++|++...++++++.+++++++|.++|++++..++.+++.+....
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            56889999999999999999999999999999999999999888999999999999999999999999999999872112


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      ...|||+||||++..|++.|+....++.||+|+++++++       ++|+.+|++|+.||+.||..
T Consensus        85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~-------~~Rl~~Rr~~~~~g~~y~~~  143 (229)
T PTZ00088         85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNIL-------IKKLLGRRICNTCNRNFNIA  143 (229)
T ss_pred             cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHH-------HHHHHcCcCCCccCCcceec
Confidence            467999999999999999998777899999999999999       99999999999999999873

>PRK14529 adenylate kinase; Provisional

Probab=99.98  E-value=7.8e-32  Score=229.44  Aligned_cols=142  Identities=23%  Similarity=0.402  Sum_probs=129.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+++.|+++|+++|||+++++|++...++++++++++++.+|.++|++++..++.+++.+.  . .
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~--~-~   77 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD--G-K   77 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc--C-C
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999875  2 7


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccc-----------cc
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTG-----------WL  207 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~-----------~~  207 (219)
                      .|||||||||+.+|++.|+..     ..||.||+|++|++++       ++|+..|++|+.||+.|+           -.
T Consensus        78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l-------~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~  150 (223)
T PRK14529         78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVA-------KNRIMGRRLCKNDNNHPNNIFIDAIKPDGDV  150 (223)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHhhCCccccccCCcccccccCCCcccCCc
Confidence            899999999999999998754     3699999999999999       999999999999987542           15


Q ss_pred             chhhhhhh
Q 027791          208 CRKFLIKL  215 (219)
Q Consensus       208 ~~~~~~~~  215 (219)
                      |-.||..|
T Consensus       151 cd~~~~~l  158 (223)
T PRK14529        151 CRVCGGEL  158 (223)
T ss_pred             CcCcCCcc
Confidence            77788765

>TIGR01351 adk adenylate kinases

Probab=99.97  E-value=9.8e-31  Score=219.76  Aligned_cols=135  Identities=29%  Similarity=0.463  Sum_probs=126.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      +|+|+|+|||||||+|+.|+++||++||+++|++|+++...++.++.+++++.+|..+|++++..++.+++.+... ...
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~   79 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN   79 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence            4899999999999999999999999999999999999998999999999999999999999999999999987432 367


Q ss_pred             eEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          145 GFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       145 g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      +|||||||++..|++.|+...  .++.+|+|++|++++       ++|+.+|++|+.||+.||..
T Consensus        80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~-------~~Rl~~R~~~~~~g~~y~~~  137 (210)
T TIGR01351        80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEEL-------VERLSGRRICPSCGRVYHLK  137 (210)
T ss_pred             cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHH-------HHHHHCCCccCCcCCccccc
Confidence            999999999999999998765  489999999999999       99999999999999999877

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14526 adenylate kinase; Provisional

Probab=99.97  E-value=2.1e-30  Score=219.06  Aligned_cols=143  Identities=27%  Similarity=0.409  Sum_probs=129.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+++.|++.++++|+++|+++|++...+++.++.+++++++|.++|++++..++.+++....  ..
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~--~~   78 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK--NN   78 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc--cc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999998753  36


Q ss_pred             CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc---------chhhhhh
Q 027791          144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL---------CRKFLIK  214 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~---------~~~~~~~  214 (219)
                      .+||||||||+.+|++.|+.......+|+|++|++++       ++|+.+|++|+.||+.||..         |-.|+..
T Consensus        79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~  151 (211)
T PRK14526         79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELL-------IKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGD  151 (211)
T ss_pred             CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHH-------HHHHHCCCcccccCCccccccCCCCccCcCCCCCCe
Confidence            7999999999999999998865545788999999999       99999999999999999865         6666654


Q ss_pred             h
Q 027791          215 L  215 (219)
Q Consensus       215 ~  215 (219)
                      |
T Consensus       152 l  152 (211)
T PRK14526        152 L  152 (211)
T ss_pred             e
Confidence            3

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.97  E-value=1.2e-29  Score=213.86  Aligned_cols=135  Identities=25%  Similarity=0.437  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+|+.||++||++|++++|++++++..+++.++.+++++.+|..+|++++..++.+++.+..  ..
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~--~~   78 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPD--CK   78 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccC--cc
Confidence            5799999999999999999999999999999999999999889999999999999999999999999999998753  34


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      .||||||||++.+|++.|++.     ..++.+|+|+++++++       ++|+.+|.+|+.||++||..
T Consensus        79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~~~~~~g~~~~~~  140 (215)
T PRK00279         79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL-------VERLSGRRICPACGRTYHVK  140 (215)
T ss_pred             CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHhCCcccCccCCccccc
Confidence            599999999999999999643     3688999999999999       99999999999999999876

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.95  E-value=7e-28  Score=197.37  Aligned_cols=131  Identities=22%  Similarity=0.359  Sum_probs=120.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-CchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      +..+..|+|+|.|||||.|||.+++++||+.|+|+|||+|++... +++.|.+|++++++|..+|.+++..||+++|.+.
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~   84 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS   84 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence            467889999999999999999999999999999999999999998 8999999999999999999999999999999875


Q ss_pred             cccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCCCCC
Q 027791          139 YYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT  199 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~  199 (219)
                        ...++|+||||||+.+|+..|+...  .+++|++|+|++|++       ++|+..|.....
T Consensus        85 --~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~-------l~Rll~R~q~~~  138 (195)
T KOG3079|consen   85 --GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETM-------LKRLLHRGQSNS  138 (195)
T ss_pred             --CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHH-------HHHHHhhcccCC
Confidence              2345699999999999999998765  589999999999999       999999986643

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.95  E-value=1.4e-27  Score=190.48  Aligned_cols=117  Identities=36%  Similarity=0.531  Sum_probs=105.5

Q ss_pred             EEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCCeEE
Q 027791           68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI  147 (219)
Q Consensus        68 l~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~g~I  147 (219)
                      |+|||||||||+|++||++||+.||++++++|+++...++.++++++++.+|+.+|++++..++..++.+.  ....|||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999986  3478999


Q ss_pred             EeCccCCHHHHHHHHh-----hCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          148 LDGIPRTRIQAVSLEF-----CYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       148 lDG~Pr~~~qa~~l~~-----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      |||||++.+|++.|+.     ...|+.||+|+++++++       .+|+.+
T Consensus        79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~-------~~R~~~  122 (151)
T PF00406_consen   79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETL-------IERLSQ  122 (151)
T ss_dssp             EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHH-------HHHHHT
T ss_pred             eeeccccHHHHHHHHHHHhhcccchheeeccccchhhh-------hhhccc
Confidence            9999999999999987     45789999999999999       999876

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.95  E-value=5e-27  Score=192.96  Aligned_cols=139  Identities=29%  Similarity=0.408  Sum_probs=126.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      +|+|+|+|||||||+|+.|+++||++||++++++++.+...++.++.+.+++.+|..+|++++..++..++.+..  ...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~   78 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK   78 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence            489999999999999999999999999999999999998888999999999999999999999999999998653  457


Q ss_pred             eEEEeCccCCHHHHHHHHhhC----CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc-cchhhh
Q 027791          145 GFILDGIPRTRIQAVSLEFCY----TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW-LCRKFL  212 (219)
Q Consensus       145 g~IlDG~Pr~~~qa~~l~~~~----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~-~~~~~~  212 (219)
                      +||+||||++..|++.|....    .++.+|+|++|++++       ++|+.+|..|+.||++||. .|..|+
T Consensus        79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~-------~~Rl~~R~~~~~~~~~~~~~~~~~~~  144 (194)
T cd01428          79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVL-------IERILGRRICPVSGRVYHLGKDDVTG  144 (194)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCcCCCcCCcCCcCCCcccC
Confidence            899999999999999997654    789999999999999       9999999999999999995 444443

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK13808 adenylate kinase; Provisional

Probab=99.95  E-value=4.3e-27  Score=210.33  Aligned_cols=125  Identities=26%  Similarity=0.424  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|||||||||+|++|+++||++||++||++|+++..+++.+..+.+++.+|.++|++++..++.++|.+..  ..
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~--~~   78 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD--AA   78 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccc--cc
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999998764  36


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .||||||||++.+|++.|++.     ..||+||+|++|++++       ++|+.+|+.+
T Consensus        79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evl-------l~Rl~~R~~~  130 (333)
T PRK13808         79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGAL-------LARVETRVAE  130 (333)
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHH-------HHHHHcCccc
Confidence            799999999999999998764     3699999999999999       9999999765

>PRK14530 adenylate kinase; Provisional

Probab=99.95  E-value=8.2e-27  Score=196.58  Aligned_cols=141  Identities=23%  Similarity=0.376  Sum_probs=122.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc-----CCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-----SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~-----~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~  137 (219)
                      .++|+|+|+|||||||+++.|+++||++||+++++++++.     ...+..+. +++.+..|..+|++++..++.+.+.+
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            3479999999999999999999999999999999999987     23344554 67788999999999999999888754


Q ss_pred             ccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc---------c
Q 027791          138 GYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL---------C  208 (219)
Q Consensus       138 ~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~---------~  208 (219)
                           ..+||+||||++.+|++.|+....++.||+|++|++++       ++|+.+|.+|+.||..|++.         |
T Consensus        82 -----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l-------~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~  149 (215)
T PRK14530         82 -----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEEL-------VDRLTGRRVCPDCGANYHVEFNQPEEEGVC  149 (215)
T ss_pred             -----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHH-------HHHHhCCCcCcccCCccccCCCCCcccccC
Confidence                 35899999999999999998777799999999999999       99999999999999988744         6


Q ss_pred             hhhhhhhh
Q 027791          209 RKFLIKLW  216 (219)
Q Consensus       209 ~~~~~~~~  216 (219)
                      ..||..|+
T Consensus       150 ~~~~~rl~  157 (215)
T PRK14530        150 DECGGELI  157 (215)
T ss_pred             cccCCccc
Confidence            66766554

>PRK14532 adenylate kinase; Provisional

Probab=99.94  E-value=4.1e-26  Score=187.86  Aligned_cols=125  Identities=24%  Similarity=0.377  Sum_probs=113.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+|++||+++|++||++||++|+++..+++.++.++++++.|+.+|++++..++.+++....  .+
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~   78 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AA   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--cc
Confidence            4699999999999999999999999999999999999998889999999999999999999999999999887653  46


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .|||+||||++.+|++.+...     ..||.+|+|++|++++       ++|+.+|..+
T Consensus        79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~-------~~Rl~~R~~~  130 (188)
T PRK14532         79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL-------IERIVKRFEE  130 (188)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCcCc
Confidence            799999999999999988643     3689999999999999       9999988643

>PRK14531 adenylate kinase; Provisional

Probab=99.94  E-value=8.8e-26  Score=186.04  Aligned_cols=124  Identities=27%  Similarity=0.419  Sum_probs=112.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      .++|+++|+|||||||+|+.|+++||++||+++|++|+++..++++++.+++++.+|..+|++++..++.+++.+.   .
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~   78 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---N   78 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---c
Confidence            3579999999999999999999999999999999999999989999999999999999999999999999888763   3


Q ss_pred             CCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      +.+|||||||++..|++.++..     ..++.||+|++|++++       .+|+.+|..
T Consensus        79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l-------~~Rl~~R~r  130 (183)
T PRK14531         79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVL-------IERLLARGR  130 (183)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHH-------HHHhhcCCC
Confidence            5789999999999999988754     2578999999999999       999998843

>PRK14528 adenylate kinase; Provisional

Probab=99.93  E-value=2.5e-25  Score=184.27  Aligned_cols=126  Identities=27%  Similarity=0.439  Sum_probs=115.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      .+|+|+|+|||||||+|+.|+++||++|+++++++++++..+++++..++.++.+|.++|++++..++.+++.+..  ..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~--~~   79 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREAD--CK   79 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcC--cc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999998763  35


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                      .+||+||||++.+|++.|++.     ..+|.||+|++|++++       ++|+.+|..+.
T Consensus        80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~-------~~Rl~~R~~~~  132 (186)
T PRK14528         80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGEL-------LKRLLGRAEIE  132 (186)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhcCcccc
Confidence            789999999999999998764     3699999999999999       99999997653

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.93  E-value=5.7e-26  Score=193.33  Aligned_cols=137  Identities=35%  Similarity=0.468  Sum_probs=128.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++.+++++|+||+||+|++.++++.|++.|++++|++|+++..++++++++++++++|+++||++++.++.++++..  .
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~--~   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP--R   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc--c
Confidence            68999999999999999999999999999999999999999999999999999999999999999999888888776  4


Q ss_pred             CCCeEEEeCccCCHHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          142 GESGFILDGIPRTRIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      .+.+|++||||++..|++.+.. ...+|.||.|++|++.+       ++|+..|++|+.||+.||..
T Consensus        92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L-------~~ri~~r~ihp~sG~~Yh~~  151 (235)
T KOG3078|consen   92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVL-------VDRITGRRIHPASGRVYHLE  151 (235)
T ss_pred             cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHH-------HHHHhcccccCcccceeccc
Confidence            6789999999999998888654 56899999999999999       99999999999999999964

>PLN02842 nucleotide kinase

Probab=99.93  E-value=1.5e-25  Score=209.28  Aligned_cols=133  Identities=26%  Similarity=0.341  Sum_probs=123.3

Q ss_pred             EEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCCeE
Q 027791           67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGF  146 (219)
Q Consensus        67 vl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~g~  146 (219)
                      +|+|+|||||||+|++|+++|++.||+++++++++.+.++++|+.+++++++|+.+|++++..++.+++++..+ ...||
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999987532 35789


Q ss_pred             EEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          147 ILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       147 IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      ||||||++..|++.|+... .||+||+|+++++++       ++|+.+|..|+.||..||..
T Consensus        80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevl-------leRl~gR~~dp~tG~iYh~~  134 (505)
T PLN02842         80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEIL-------IDRCVGRRLDPVTGKIYHIK  134 (505)
T ss_pred             EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHhccccccccCCccccc
Confidence            9999999999999887653 699999999999999       99999999999999999875

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.93  E-value=6.2e-25  Score=179.57  Aligned_cols=123  Identities=22%  Similarity=0.391  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      .|+|+|+|||||||+|+.|++++|++||+++|++|+++..+++.++.+++++.+|..+|++++..++.+++...   ...
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~   77 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK   77 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence            37899999999999999999999999999999999999888899999999999999999999999999888764   267


Q ss_pred             eEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          145 GFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       145 g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      +|||||||++..|++.+...    ..||.+|+|++|++++       ++|+.+|...
T Consensus        78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~-------~~Rl~~R~~~  127 (183)
T TIGR01359        78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVM-------IKRLLKRGQS  127 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhcCCcc
Confidence            89999999999999887643    3689999999999999       9999999754

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=99.92  E-value=2.1e-24  Score=185.02  Aligned_cols=127  Identities=24%  Similarity=0.421  Sum_probs=115.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      ...+++|+|+|+|||||||+|+.|+++||++||+++|++|+++...++.+..+.+.+++|..+|++++..++.+++... 
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~-  118 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS-  118 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-
Confidence            4567899999999999999999999999999999999999999888899999999999999999999999999888754 


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHhh--CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEFC--YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~~--~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                        .+.+|||||||++..|+..|+..  ..||.+|+|+++++++       .+|+.+|..
T Consensus       119 --~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~-------~~Rl~~R~~  168 (234)
T PLN02200        119 --DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEM-------VKRVLNRNQ  168 (234)
T ss_pred             --CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHH-------HHHHHcCcC
Confidence              35689999999999999988765  3699999999999999       999999863

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.92  E-value=1.8e-24  Score=178.53  Aligned_cols=124  Identities=29%  Similarity=0.540  Sum_probs=115.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ++|+|+|+|||||||+|+.|+++++++|+|+++++|......++++++++.++++|+++|++++..++..++.+.++  .
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~--~   78 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC--K   78 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc--c
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999988753  2


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      .+||+||||++..|++.++..     ..+|.++.++++++.+       ++|+..|.+
T Consensus        79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~-------~~r~~~r~~  129 (178)
T COG0563          79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELL-------LERLLGRRV  129 (178)
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHH-------HHHHhCccc
Confidence            399999999999999999864     4789999999999999       999999965

>PRK02496 adk adenylate kinase; Provisional

Probab=99.92  E-value=2.3e-24  Score=176.99  Aligned_cols=124  Identities=26%  Similarity=0.429  Sum_probs=113.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      +++|+|+|+|||||||+++.|+++||++|++++++++++...+++.+..+++++.+|..+|++++..++.+++.+..  .
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~--~   78 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPD--A   78 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--c
Confidence            36899999999999999999999999999999999999998889999999999999999999999999999997653  3


Q ss_pred             CCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..|||+||||++..|++.++..     ..|+.+|+|+++++++       ++|+.+|.
T Consensus        79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~  129 (184)
T PRK02496         79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVV-------VERLLARG  129 (184)
T ss_pred             cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHhcCC
Confidence            5789999999999999888653     2689999999999999       99999884

>PRK14527 adenylate kinase; Provisional

Probab=99.91  E-value=1.6e-23  Score=173.42  Aligned_cols=128  Identities=23%  Similarity=0.348  Sum_probs=115.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .++..|+|+|+|||||||+++.|+++||++|++++++++++...++++++.+.+++.+|..+|++++..++.+++.+.. 
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~-   82 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME-   82 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence            3568899999999999999999999999999999999999998889999999999999999999999999999987653 


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                        ..+||+||||++..|++.++..     ..++.||+|++|++++       ++|+.+|..+.
T Consensus        83 --~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~-------~~Rl~~R~~~~  136 (191)
T PRK14527         83 --PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEEL-------IRRIVERARQE  136 (191)
T ss_pred             --CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHcCcccC
Confidence              3579999999999999888653     3578899999999999       99999997653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.88  E-value=6e-22  Score=161.75  Aligned_cols=126  Identities=24%  Similarity=0.373  Sum_probs=111.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ....|+|+|+|||||||+++.|++++|+.|+++|++++++....++.++.++..+.++..+|++.+...+..++.... .
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~   80 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-G   80 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-C
Confidence            346789999999999999999999999999999999999887777888889999999999999998888888876543 3


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+.+||+||||++..|++.+... ..||.+|+|++|++++       ++|+.+|.
T Consensus        81 ~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~-------~~Rl~~R~  128 (188)
T TIGR01360        81 TSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTM-------VKRLLKRA  128 (188)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHccc
Confidence            46789999999999999988654 4689999999999999       99999885

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01184 hypothetical protein; Provisional

Probab=99.65  E-value=2.8e-15  Score=122.86  Aligned_cols=117  Identities=14%  Similarity=0.225  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-Cc-----hhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RS-----ALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s-----~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~  137 (219)
                      +.|+|+|+|||||||+++ +++++|+++++++|++|+++.. +.     .+++.+.+...   .+.++.+..++.+.+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence            578999999999999987 7899999999999999998632 22     23444443322   12233444455555554


Q ss_pred             ccccCCCeEEEeCccCCHHHHHHHHhhCC-CcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          138 GYYRGESGFILDGIPRTRIQAVSLEFCYT-MALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       138 ~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~-pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                         .+...+|+||+ ++..|.+.+..... +..+|++++|+++.       ++|+.+|.
T Consensus        78 ---~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~-------~~Rl~~R~  125 (184)
T PRK01184         78 ---KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVR-------FERLKKRG  125 (184)
T ss_pred             ---cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHH-------HHHHHHcC
Confidence               24567999999 78888888766543 66899999999999       99999885

>PRK08356 hypothetical protein; Provisional

Probab=99.62  E-value=3.5e-15  Score=124.04  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=87.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC----Cc---hhHHH----HHHHHHcCCcccH----HH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP----RS---ALYKQ----IANAVNEGKLVPE----DV  126 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~----~s---~lg~~----i~~~l~~g~~ip~----e~  126 (219)
                      +.+.|+|+|||||||||+|+.|+ ++|+++|++++.++.....    .+   ..+..    ..++++.|..+++    ++
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            34789999999999999999995 5999999999966543322    11   12212    1355666666664    56


Q ss_pred             HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       127 i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      +.+++.+++..     ...|++||+ ++..|++.|...  ...+|++++|++++       .+|+.+|...
T Consensus        83 ~~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~-------~~Rl~~R~~~  138 (195)
T PRK08356         83 LIRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIR-------FERLRRRGAE  138 (195)
T ss_pred             HHHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHH-------HHHHHhcCCc
Confidence            66666555532     235999999 999999998763  35899999999999       9999988643

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.58  E-value=3.8e-15  Score=119.00  Aligned_cols=129  Identities=18%  Similarity=0.206  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      +..++|+|+|.||+||||+|++||+.+|+++|.++|++++.-     +.....+.. +-..+.++-+.+-|.+.+.+   
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-----l~~gyDE~y-~c~i~DEdkv~D~Le~~m~~---   75 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-----LYEGYDEEY-KCHILDEDKVLDELEPLMIE---   75 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-----chhcccccc-cCccccHHHHHHHHHHHHhc---
Confidence            456789999999999999999999999999999999998742     111110100 11245566666667777754   


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccccchhhhhhh
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKL  215 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~  215 (219)
                         .|.|+|-+-...     |.+ -.+|+||.|.+|.+++       .+||..|.++. ..-..|+.|.+||..+
T Consensus        76 ---Gg~IVDyHgCd~-----Fpe-rwfdlVvVLr~~~s~L-------Y~RL~sRgY~e-~Ki~eNiecEIfgv~~  133 (176)
T KOG3347|consen   76 ---GGNIVDYHGCDF-----FPE-RWFDLVVVLRTPNSVL-------YDRLKSRGYSE-KKIKENIECEIFGVVL  133 (176)
T ss_pred             ---CCcEEeecccCc-----cch-hheeEEEEEecCchHH-------HHHHHHcCCCH-HHHhhhcchHHHHHHH
Confidence               478998442211     111 2589999999999999       99999999887 5778999999999865

>PRK06217 hypothetical protein; Validated

Probab=99.58  E-value=1.2e-14  Score=119.54  Aligned_cols=108  Identities=16%  Similarity=0.194  Sum_probs=78.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      +++|+|+|+|||||||+++.|++++|++|+++|++++...  +++..          ...+.+....++.+.+..     
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~-----   63 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPFT----------TKRPPEERLRLLLEDLRP-----   63 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCcc----------ccCCHHHHHHHHHHHHhc-----
Confidence            3689999999999999999999999999999999887532  21111          112344444444444432     


Q ss_pred             CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                      +.+||+||++...  .+.+.  ..+|.+|+|++|.+++       ++|+.+|..+.
T Consensus        64 ~~~~vi~G~~~~~--~~~~~--~~~d~~i~Ld~~~~~~-------~~Rl~~R~~~~  108 (183)
T PRK06217         64 REGWVLSGSALGW--GDPLE--PLFDLVVFLTIPPELR-------LERLRLREFQR  108 (183)
T ss_pred             CCCEEEEccHHHH--HHHHH--hhCCEEEEEECCHHHH-------HHHHHcCcccc
Confidence            3579999998642  22222  2478999999999999       99999997653

>PRK08118 topology modulation protein; Reviewed

Probab=99.57  E-value=1.5e-14  Score=117.90  Aligned_cols=99  Identities=20%  Similarity=0.285  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ++|+|+|+|||||||+|+.|+++++++++++|++++..-                ....+++....+++..+.      .
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~------~   59 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK------E   59 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc------C
Confidence            589999999999999999999999999999999876421                123445555555544332      2


Q ss_pred             CeEEEeCccC-CHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          144 SGFILDGIPR-TRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       144 ~g~IlDG~Pr-~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      .+||+||.+. +.+  ..+.   .+|.+|+|++|.+++       +.|+.+|..
T Consensus        60 ~~wVidG~~~~~~~--~~l~---~~d~vi~Ld~p~~~~-------~~R~~~R~~  101 (167)
T PRK08118         60 DEWIIDGNYGGTMD--IRLN---AADTIIFLDIPRTIC-------LYRAFKRRV  101 (167)
T ss_pred             CCEEEeCCcchHHH--HHHH---hCCEEEEEeCCHHHH-------HHHHHHHHH
Confidence            4799999543 432  2222   489999999999999       888888854

>PRK03839 putative kinase; Provisional

Probab=99.55  E-value=2.9e-14  Score=116.55  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+++.|+++++++|+++++++++..     +++...+        ..+.....+...+.+..  .+
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~--------~~~~~~~~l~~~~~~~~--~~   65 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD--------EMEIDFDKLAYFIEEEF--KE   65 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh--------hhhcCHHHHHHHHHHhc--cC
Confidence            479999999999999999999999999999999987642     1111000        01122333444443321  24


Q ss_pred             CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      .+||+||+...         ...++.+|+|+++++++       .+|+.+|..
T Consensus        66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~-------~~Rl~~R~~  102 (180)
T PRK03839         66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKII-------KERLKERGY  102 (180)
T ss_pred             CCEEEEecccc---------ccCCCEEEEEECCHHHH-------HHHHHHcCC
Confidence            56999997532         23589999999999999       999988853

>PRK07261 topology modulation protein; Provisional

Probab=99.42  E-value=6.8e-13  Score=108.48  Aligned_cols=102  Identities=21%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ++|+|+|+|||||||+++.|++.+++++++.|++.....                ....+.+.....+...+.+      
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~------   58 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK------   58 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC------
Confidence            579999999999999999999999999999987653210                1112333444444544432      


Q ss_pred             CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      ..||+||.+.+..+...++.   .|.+|+|++|.+++       +.|+.+|...
T Consensus        59 ~~wIidg~~~~~~~~~~l~~---ad~vI~Ld~p~~~~-------~~R~lkR~~~  102 (171)
T PRK07261         59 HDWIIDGNYSWCLYEERMQE---ADQIIFLNFSRFNC-------LYRAFKRYLK  102 (171)
T ss_pred             CCEEEcCcchhhhHHHHHHH---CCEEEEEcCCHHHH-------HHHHHHHHHH
Confidence            24999999776554555553   69999999999999       8888777543

>PRK13973 thymidylate kinase; Provisional

Probab=99.42  E-value=7.8e-13  Score=111.57  Aligned_cols=116  Identities=15%  Similarity=0.073  Sum_probs=75.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcC--CcccH------------H
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVPE------------D  125 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g--~~ip~------------e  125 (219)
                      ++.|+|.|++|||||||++.|++.+   |++++.+.+      +.+++.++.+++.+..+  ..+..            +
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~------p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~   76 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTRE------PGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDD   76 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEC------CCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999   888886621      22345566666655432  11211            2


Q ss_pred             HHHHHHHHHHHhccccCCCeEEEeCcc----------CC--HHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhh
Q 027791          126 VIFALLSKRLEEGYYRGESGFILDGIP----------RT--RIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILN  189 (219)
Q Consensus       126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~P----------r~--~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~  189 (219)
                      .+..++.+.+.+     +.-+|.|.|-          +.  .++...++..    ..||++|+|++|++++       ++
T Consensus        77 ~~~~~i~~~l~~-----g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~-------~~  144 (213)
T PRK13973         77 HVEEVIRPALAR-----GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVG-------LE  144 (213)
T ss_pred             HHHHHHHHHHHC-----CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HH
Confidence            223333444433     2345556543          32  2344555432    3699999999999999       99


Q ss_pred             hhhcCCC
Q 027791          190 EQVDGSL  196 (219)
Q Consensus       190 Rl~~R~~  196 (219)
                      |+.+|..
T Consensus       145 Rl~~R~~  151 (213)
T PRK13973        145 RAAKRRG  151 (213)
T ss_pred             HHHhccC
Confidence            9998864

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.41  E-value=4.6e-13  Score=109.40  Aligned_cols=123  Identities=18%  Similarity=0.139  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|.++|.||+||||+|++|+ ++|+.+++..+++.+.-.     +...-+ ......+..+-+    .++++...  ..
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~-----~~~~de-~r~s~~vD~d~~----~~~le~~~--~~   67 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGL-----YTEYDE-LRKSVIVDVDKL----RKRLEELL--RE   67 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCC-----eeccCC-ccceEEeeHHHH----HHHHHHHh--cc
Confidence            579999999999999999999 999999999998877532     100000 000111222232    33333211  23


Q ss_pred             CeEEEeCccCCHHHHHHHHhhCC-CcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccccchhhhhhhh
Q 027791          144 SGFILDGIPRTRIQAVSLEFCYT-MALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWLCRKFLIKLW  216 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~~-pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~  216 (219)
                      .+.|+|++-.         ++.. +|+||.|.++++++       .+||++|.+++. .-..|..|..+++.+|
T Consensus        68 ~~~Ivd~H~~---------hl~~~~dlVvVLR~~p~~L-------~~RLk~RGy~~e-KI~ENveAEi~~vi~~  124 (180)
T COG1936          68 GSGIVDSHLS---------HLLPDCDLVVVLRADPEVL-------YERLKGRGYSEE-KILENVEAEILDVILI  124 (180)
T ss_pred             CCeEeechhh---------hcCCCCCEEEEEcCCHHHH-------HHHHHHcCCCHH-HHHHHHHHHHHHHHHH
Confidence            5689998832         2333 89999999999999       999999999876 6778999999998876

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.40  E-value=1.3e-12  Score=105.77  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-CchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      |+|.+.|+|||||||+++.||++||++|+|.|+++|+-+.. +.++. ++.++-++...++.+     +.++....  ..
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~-ef~~~AE~~p~iD~~-----iD~rq~e~--a~   72 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLE-EFSRYAEEDPEIDKE-----IDRRQKEL--AK   72 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHH-HHHHHHhcCchhhHH-----HHHHHHHH--HH
Confidence            57899999999999999999999999999999999987653 22222 122222332222222     22222221  12


Q ss_pred             CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +.++|++|.     -+.++.. ..+|+-|+|++|.++.       .+|+.+|.
T Consensus        73 ~~nvVlegr-----LA~Wi~k-~~adlkI~L~Apl~vR-------a~Ria~RE  112 (179)
T COG1102          73 EGNVVLEGR-----LAGWIVR-EYADLKIWLKAPLEVR-------AERIAKRE  112 (179)
T ss_pred             cCCeEEhhh-----hHHHHhc-cccceEEEEeCcHHHH-------HHHHHHhc
Confidence            467899876     1334433 4579999999999999       99999885

>PRK13949 shikimate kinase; Provisional

Probab=99.40  E-value=3.7e-12  Score=104.04  Aligned_cols=108  Identities=12%  Similarity=0.157  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-HcCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      .+|+|+|+|||||||+++.||+.++++++++|+++.+....      .+.+.+ +.|+....+.-..++.+ +..     
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~-----   69 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE-----   69 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence            47999999999999999999999999999999988765432      222222 22333333444444443 322     


Q ss_pred             CCeEEE-e--CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          143 ESGFIL-D--GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       143 ~~g~Il-D--G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ..++|+ +  |+|....+.+.+..   .++||+|++|.+++       .+|+.+
T Consensus        70 ~~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~-------~~Ri~~  113 (169)
T PRK13949         70 FEDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVL-------FVRLRL  113 (169)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHH-------HHHHhc
Confidence            235666 4  46667766777755   47899999999999       999974

>PRK00625 shikimate kinase; Provisional

Probab=99.36  E-value=6.5e-12  Score=103.22  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      |.|+|+|+|||||||+++.||+++|++++++|+++++.....  ....+.+.++. |+....+.-..++ +.+.     .
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l-~~l~-----~   72 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLAL-TSLP-----V   72 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHH-HHhc-----c
Confidence            469999999999999999999999999999999998754321  01122332321 2211111111222 1221     1


Q ss_pred             CCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          143 ESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       143 ~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      +..+|.+|  .+...+..+.+.   .-..||+|++|.+++       .+|+.+|...
T Consensus        73 ~~~VIs~GGg~~~~~e~~~~l~---~~~~Vv~L~~~~e~l-------~~Rl~~R~~~  119 (173)
T PRK00625         73 IPSIVALGGGTLMIEPSYAHIR---NRGLLVLLSLPIATI-------YQRLQKRGLP  119 (173)
T ss_pred             CCeEEECCCCccCCHHHHHHHh---cCCEEEEEECCHHHH-------HHHHhcCCCC
Confidence            23344444  333333333332   246799999999999       9999998654

>PRK13974 thymidylate kinase; Provisional

Probab=99.35  E-value=4e-12  Score=107.21  Aligned_cols=127  Identities=19%  Similarity=0.174  Sum_probs=80.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeec--cchhHHhhcCCCchhHHHHHHHHHc--CCcccHHHHHHHH--HHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSALYKQIANAVNE--GKLVPEDVIFALL--SKRL  135 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is--~~dllr~~~~~~s~lg~~i~~~l~~--g~~ip~e~i~~Ll--~~~l  135 (219)
                      ++..|+|.|++||||||+++.|++.+.-...-  ..+.+....+.++++|+.+++++..  |...++.....++  .++.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~   81 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA   81 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence            36789999999999999999999988422110  0011222234578899999999863  3344444444444  2221


Q ss_pred             Hhcc-----ccCCCeEEE-----------eCccCCHHH--HHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          136 EEGY-----YRGESGFIL-----------DGIPRTRIQ--AVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       136 ~~~~-----~~~~~g~Il-----------DG~Pr~~~q--a~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ++..     ......+||           ||+|+...+  ...++..    ..||++|+|++|++++       ++|+.+
T Consensus        82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~-------~~R~~~  154 (212)
T PRK13974         82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEES-------IRRRKN  154 (212)
T ss_pred             HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHHHh
Confidence            1100     001223666           788876443  4444432    3699999999999999       999988


Q ss_pred             CC
Q 027791          194 GS  195 (219)
Q Consensus       194 R~  195 (219)
                      |.
T Consensus       155 R~  156 (212)
T PRK13974        155 RK  156 (212)
T ss_pred             cc
Confidence            74

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.34  E-value=6.2e-12  Score=105.03  Aligned_cols=120  Identities=18%  Similarity=0.219  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc--------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP--------------  123 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip--------------  123 (219)
                      ++|.|+|++||||||+++.|++.+|+++|+.|++.++.+..+++.++.+.+.+.      +|..+.              
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            479999999999999999999999999999999999999888888887776653      231122              


Q ss_pred             ----HHHHHHHHHHHHHhcc--ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ----EDVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ----~e~i~~Ll~~~l~~~~--~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                          +++++.++.+.+.+..  .....-+|+| .|.-.+.  .+.  ..+|.+|++++|+++.       ++|+.+|.
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~--~~~D~ii~V~a~~e~r-------~~Rl~~R~  147 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT--DLCSEIWVVDCSPEQQ-------LQRLIKRD  147 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH--hCCCEEEEEECCHHHH-------HHHHHHcC
Confidence                1233444444443211  1112345555 3322211  111  1479999999999999       99999885

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.32  E-value=9.8e-12  Score=101.87  Aligned_cols=109  Identities=20%  Similarity=0.214  Sum_probs=72.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhcccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .+.|+++|+|||||||+++.||+.++++++|+|.++.+...      +.|.++++. |+.-..+.-.+++.+-...    
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~----   71 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEE----   71 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhc----
Confidence            46799999999999999999999999999999999988643      344444443 3332222323333322222    


Q ss_pred             CCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791          142 GESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       142 ~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                       +..+|-.|  ..-+.+....+..   -..||||++|.+++       ++|+.
T Consensus        72 -~~~ViaTGGG~v~~~enr~~l~~---~g~vv~L~~~~e~l-------~~Rl~  113 (172)
T COG0703          72 -DNAVIATGGGAVLSEENRNLLKK---RGIVVYLDAPFETL-------YERLQ  113 (172)
T ss_pred             -CCeEEECCCccccCHHHHHHHHh---CCeEEEEeCCHHHH-------HHHhc
Confidence             22334333  4444444444443   34899999999999       99998

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.31  E-value=6.9e-12  Score=110.07  Aligned_cols=118  Identities=12%  Similarity=0.016  Sum_probs=75.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +..|++.|+|||||||+|+.|++++ +..+++.|++ +..+....+.+..  .+..++...-.+.....+...+.     
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-----   73 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK-----   73 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH-----
Confidence            4678899999999999999999999 9999999774 4443221111100  00000000001122233333332     


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhC---CC-cEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCY---TM-ALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~---~p-d~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+..+|+|+++.+..+.+.+....   .. -.+|+|+++.+++       .+|+.+|.
T Consensus        74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~-------~~R~~~R~  124 (300)
T PHA02530         74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEEL-------VKRNRKRG  124 (300)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH-------HHHHHccC
Confidence            246799999999988887765432   22 3479999999999       99999994

>PRK08233 hypothetical protein; Provisional

Probab=99.31  E-value=1.2e-11  Score=100.27  Aligned_cols=119  Identities=9%  Similarity=0.109  Sum_probs=69.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +++.|.|.|+|||||||+|+.|++.++...+...|..+....     ...+.+....+... +......+.+.+......
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~   75 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK   75 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence            357889999999999999999999996433333333332211     12233333444333 223333334444432111


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      ....+|+..+|......+ +..  .+|++|+|++|++++       ++|+.+|..
T Consensus        76 ~~~~~vivd~~~~~~~~~-~~~--~~d~~i~l~~~~~~~-------~~R~~~R~~  120 (182)
T PRK08233         76 SNVDYIIVDYPFAYLNSE-MRQ--FIDVTIFIDTPLDIA-------MARRILRDF  120 (182)
T ss_pred             CCceEEEEeeehhhccHH-HHH--HcCEEEEEcCCHHHH-------HHHHHHHHh
Confidence            223555544565433222 222  378999999999999       999877753

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.31  E-value=5.2e-12  Score=98.59  Aligned_cols=114  Identities=17%  Similarity=0.120  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchh---HHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL---YKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~l---g~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .|++.|+|||||||+++.|++.++..+|+.|++.........+.   .....+.       -.+.+...+...+..    
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~----   69 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN----   69 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT----
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc----
Confidence            47899999999999999999999999999988666544321110   0001000       012333444444443    


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                       +..+|+|+......+.+.+...    ..+..+|+|+++++++       .+|+.+|.-.
T Consensus        70 -g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~-------~~R~~~R~~~  121 (143)
T PF13671_consen   70 -GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETL-------RERLAQRNRE  121 (143)
T ss_dssp             -T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHH-------HHHHHTTHCC
T ss_pred             -CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHH-------HHHHHhcCCc
Confidence             3568999765555555444332    2356899999999999       9999988644

...

>PRK04182 cytidylate kinase; Provisional

Probab=99.30  E-value=8e-12  Score=101.01  Aligned_cols=112  Identities=19%  Similarity=0.182  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC-CchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~-~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      |+|+|.|+|||||||+++.|++++|++++++++++++.... +.+. ..+.+   .++..+.  +...+...+.... ..
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~-~~~~~---~~~~~~~--~~~~~~~~~~~~~-~~   73 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSL-EEFNK---YAEEDPE--IDKEIDRRQLEIA-EK   73 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCH-HHHHH---HhhcCch--HHHHHHHHHHHHH-hc
Confidence            57999999999999999999999999999999988875432 1111 11211   1221121  1112222222211 12


Q ss_pred             CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..++|+||.-..     .+.. ..++++|+|++|.+++       .+|+.+|.
T Consensus        74 ~~~~Vi~g~~~~-----~~~~-~~~~~~V~l~a~~e~~-------~~Rl~~r~  113 (180)
T PRK04182         74 EDNVVLEGRLAG-----WMAK-DYADLKIWLKAPLEVR-------AERIAERE  113 (180)
T ss_pred             CCCEEEEEeecc-----eEec-CCCCEEEEEECCHHHH-------HHHHHhcc
Confidence            457899984211     1111 1278999999999999       99998875

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.30  E-value=1.8e-11  Score=98.31  Aligned_cols=112  Identities=18%  Similarity=0.147  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC-chhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~-s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      +.|+|.|++||||||+++.|++++|+++++.+++++...... .+. ..+........     .+...+...+.+.. ..
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~-----~~~~~~~~~i~~~~-~~   73 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL-IEFLNYAEENP-----EIDKKIDRRIHEIA-LK   73 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH-HHHHHHHhcCc-----HHHHHHHHHHHHHH-hc
Confidence            478999999999999999999999999999999887754321 111 11111211111     12223333333221 12


Q ss_pred             CCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..++|+||.-....    +  ...+|++|++++|++++       .+|+.+|.
T Consensus        74 ~~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r-------~~R~~~R~  113 (171)
T TIGR02173        74 EKNVVLESRLAGWI----V--REYADVKIWLKAPLEVR-------ARRIAKRE  113 (171)
T ss_pred             CCCEEEEeccccee----e--cCCcCEEEEEECCHHHH-------HHHHHHcc
Confidence            45789999632211    1  12478999999999999       99998885

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.29  E-value=1.1e-11  Score=103.16  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=80.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----Cccc--------------
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVP--------------  123 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip--------------  123 (219)
                      +..|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+..+     ..++              
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   80 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA   80 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence            35799999999999999999998 999999999999999887777777776654221     1122              


Q ss_pred             ----HHHHHHHHHHHHHhccc--cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ----EDVIFALLSKRLEEGYY--RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ----~e~i~~Ll~~~l~~~~~--~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                          +++++..+.+++.+...  ....-+|+|. |.-.+ . .+.  ..+|.||++++|+++.       .+|+.+|+
T Consensus        81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e-~-~~~--~~~D~vi~V~a~~e~~-------~~Rl~~R~  146 (194)
T PRK00081         81 RKKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE-N-GLE--KLVDRVLVVDAPPETQ-------LERLMARD  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc-C-Cch--hhCCeEEEEECCHHHH-------HHHHHHcC
Confidence                12344444444432211  1123455653 32221 1 011  1379999999999999       99999884

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.29  E-value=1.1e-11  Score=101.72  Aligned_cols=118  Identities=19%  Similarity=0.205  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCC-----ccc----------------
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVP----------------  123 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~-----~ip----------------  123 (219)
                      .|.|+|+|||||||+++.|++ +|+++|++|++.++.+..+.+.++.+.+.+...-     .+.                
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            378999999999999999998 9999999999999998877777777766543211     111                


Q ss_pred             --HHHHHHHHHHHHHhcccc-CC-CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 --EDVIFALLSKRLEEGYYR-GE-SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 --~e~i~~Ll~~~l~~~~~~-~~-~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                        +++++.++..++.+.... .. .-+|+| .|.-.+..  +.  ..+|.+|++++|+++.       ++|+.+|.
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~plL~e~~--~~--~~~D~vv~V~a~~~~r-------i~Rl~~Rd  143 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IPLLFETG--LE--KLVDRVIVVDAPPEIQ-------IERLMKRD  143 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-ehHhhcCC--cH--HhCCeEEEEECCHHHH-------HHHHHHcC
Confidence              234455554444332111 12 234555 44322211  11  1469999999999999       99999885

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK13947 shikimate kinase; Provisional

Probab=99.26  E-value=5e-11  Score=96.17  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      ..|+|+|+|||||||+++.||+++|+++++.|+++++..  +.+.    .++++ .|+....+....+++ .+..     
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~~----~~~~~~~ge~~~~~~e~~~~~-~l~~-----   69 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMTV----AEIFEKDGEVRFRSEEKLLVK-KLAR-----   69 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCcH----HHHHHHhChHHHHHHHHHHHH-HHhh-----
Confidence            369999999999999999999999999999998876652  2222    22222 122111222222222 2322     


Q ss_pred             CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      ..+.|+. |  ++......+.+.+   .+.+|+|+++++++       .+|+..|...
T Consensus        70 ~~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l-------~~Rl~~r~~r  117 (171)
T PRK13947         70 LKNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVI-------LRRVGKKKSR  117 (171)
T ss_pred             cCCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHH-------HHHhcCCCCC
Confidence            1233332 2  3444444444443   36799999999999       9999877543

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.25  E-value=7.1e-11  Score=99.34  Aligned_cols=118  Identities=18%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc-----cc--------------
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VP--------------  123 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-----ip--------------  123 (219)
                      ++.|.|+|.|||||||+++.+++ +|+++|++|+++|+.+.++++..+.+.+.....-.     +.              
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            57899999999999999999988 99999999999999988877766665554321110     00              


Q ss_pred             ----HHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhh-C--CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ----EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFC-Y--TMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ----~e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~-~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                          ++++..++...+.........++++--.|       .|.+. .  .+|.||.+++|+++.       ++|+.+|.
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r-------~eRl~~R~  145 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIR-------LERLMKRD  145 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHH-------HHHHHhcC
Confidence                12344444444321000111223332233       22221 1  278999999999999       99999997

>PRK04040 adenylate kinase; Provisional

Probab=99.24  E-value=2.9e-11  Score=100.53  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=74.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCc--hhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRS--ALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s--~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      ++.|+|+|+|||||||+++.|++++  ++.+++.++++++.+....  .....+++    -.....+-+..+..+.+.+.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHh
Confidence            5789999999999999999999999  8999999999877654211  00111111    11111112222333444432


Q ss_pred             cccCCCeEEEeCccCCH--H------HHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          139 YYRGESGFILDGIPRTR--I------QAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~--~------qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                        ..+..+|+||+....  .      ....+. ...||.+|+|.++++++       ++|..+
T Consensus        78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~-~l~pd~ii~l~a~p~~i-------~~Rrl~  130 (188)
T PRK04040         78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLE-ELNPDVIVLIEADPDEI-------LMRRLR  130 (188)
T ss_pred             --hcCCCEEEeeeeeeccCCCCcCCCCHHHHh-hcCCCEEEEEeCCHHHH-------HHHHhc
Confidence              234458999965211  1      122233 34799999999999999       887764

>PRK13975 thymidylate kinase; Provisional

Probab=99.23  E-value=2.1e-10  Score=94.56  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=73.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH-HHH------H
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKR------L  135 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll-~~~------l  135 (219)
                      ++.|+|.|++||||||+++.|+++++..+..        .+.++.+++.+++++..+. .++..+..+. .++      +
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~--------~~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i   72 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC--------EPTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI   72 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE--------CCCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999863321        1223556777888776542 3332222111 122      2


Q ss_pred             HhccccCCCeEEEeCccCCH-----------HHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          136 EEGYYRGESGFILDGIPRTR-----------IQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       136 ~~~~~~~~~g~IlDG~Pr~~-----------~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +...  ....+|.|.|+.+.           .....+.. ...||++|+|+++++++       ++|+.+|.
T Consensus        73 ~~~~--~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~-------~~Rl~~r~  135 (196)
T PRK13975         73 EEDL--KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEA-------LKRMETRD  135 (196)
T ss_pred             HHHH--cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHH-------HHHHhccC
Confidence            2111  13568999876431           11111221 24699999999999999       99999886

>PRK06762 hypothetical protein; Provisional

Probab=99.22  E-value=6.4e-11  Score=95.36  Aligned_cols=111  Identities=20%  Similarity=0.191  Sum_probs=70.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      +..|+|.|+|||||||+|+.|++++  ++.+++.|+ ++..+.....         ..+ ....+.+..++...+.    
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~----   66 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLG----   66 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHh----
Confidence            5788999999999999999999998  566777654 4443321100         000 1122333333332222    


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                       .+..+|+|+......+.+.+..    ...+..+|+|++|.+++       ++|..+|..
T Consensus        67 -~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~-------~~R~~~R~~  118 (166)
T PRK06762         67 -HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEET-------LRRHSTRPK  118 (166)
T ss_pred             -CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHH-------HHHHhcccc
Confidence             2456899987544333333332    23467899999999999       999999964

>PLN02924 thymidylate kinase

Probab=99.22  E-value=2.1e-10  Score=97.70  Aligned_cols=127  Identities=15%  Similarity=0.099  Sum_probs=81.7

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH-HHHHH
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRL  135 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L-l~~~l  135 (219)
                      ...+.+++.|+|.|++|||||||++.|++.+....+++ ..+++. ..+++.|+.+++++..+..+++....-+ ..++.
T Consensus        10 ~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep-~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~   87 (220)
T PLN02924         10 SSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFP-DRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRW   87 (220)
T ss_pred             CCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            33446789999999999999999999999996555443 233332 2357889999998887655544322111 11222


Q ss_pred             Hhcc-----ccCCCeEEEeCccCCH--HHH------HHHHh----hCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791          136 EEGY-----YRGESGFILDGIPRTR--IQA------VSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       136 ~~~~-----~~~~~g~IlDG~Pr~~--~qa------~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                      ++..     ...+..+|.|-|..+.  .|.      +++..    ...||++|+|++|++++       ++|..
T Consensus        88 ~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a-------~~R~~  154 (220)
T PLN02924         88 EKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEA-------AERGG  154 (220)
T ss_pred             HHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHhc
Confidence            1110     1234568999886532  111      12221    23699999999999999       88864

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.22  E-value=1.3e-10  Score=91.85  Aligned_cols=113  Identities=15%  Similarity=0.019  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc----HHHHHHHHHHHHHhccc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP----EDVIFALLSKRLEEGYY  140 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip----~e~i~~Ll~~~l~~~~~  140 (219)
                      .|+|.|+|||||||+++.|++.++.++++.|++.....          ...+..|...+    ++....+.....+.. .
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~   69 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKL-A   69 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHH-H
Confidence            37899999999999999999999999999877654311          00011121111    122222211111111 0


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh--CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC--YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~--~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..+.++|+|.......+.+.+...  ..+..+|++++|.+++       .+|+.+|.
T Consensus        70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~-------~~R~~~R~  119 (150)
T cd02021          70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVL-------AERLAARK  119 (150)
T ss_pred             hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHH-------HHHHHhcc
Confidence            134568888644445555556554  2455799999999999       99999995

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.22  E-value=1.1e-11  Score=94.37  Aligned_cols=102  Identities=22%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-ccCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGE  143 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~-~~~~  143 (219)
                      +|+|.|+|||||||+|+.|++++|++|+++|++++.....  +.        ..+..-......+.+...++... ....
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--ER--------DDDEREYIDADIDLLDDILEQLQNKPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--HG--------CTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--cc--------CcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence            5889999999999999999999999999999954322111  00        00110001112222222232210 0245


Q ss_pred             CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhh
Q 027791          144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCC  180 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l  180 (219)
                      ..||+||.-. .. .+ + .....+.+|+++++.+.+
T Consensus        71 ~~~ii~g~~~-~~-~~-~-~~~~~~~~i~l~~~~~~~  103 (121)
T PF13207_consen   71 DNWIIDGSYE-SE-ME-I-RLPEFDHVIYLDAPDEEC  103 (121)
T ss_dssp             -EEEEECCSC-HC-CH-S-CCHHGGCEEEEEEEEHHH
T ss_pred             CeEEEeCCCc-cc-hh-h-hhhcCCEEEEEECCCHHH
Confidence            6899999311 11 11 1 111246899999999855

...

>PRK13946 shikimate kinase; Provisional

Probab=99.21  E-value=1.5e-10  Score=95.34  Aligned_cols=115  Identities=13%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      ..+..|+|+|+|||||||+++.||+++|+++++.|.++....  +.+..+.+..   .|.....+.-..++.+.+.    
T Consensus         8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~----   78 (184)
T PRK13946          8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK----   78 (184)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh----
Confidence            456789999999999999999999999999999988766553  2233222211   1221112222333332221    


Q ss_pred             cCCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          141 RGESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       141 ~~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                       ....+|..|  .+......+.+..   -.++|+|++|++++       ++|+.+|.
T Consensus        79 -~~~~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~-------~~Rl~~r~  124 (184)
T PRK13946         79 -GGPLVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVL-------WERVSRRD  124 (184)
T ss_pred             -cCCeEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHH-------HHHhcCCC
Confidence             123455554  2344444444433   35789999999999       99998774

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.20  E-value=3.9e-10  Score=95.36  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=81.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcC-CcccHHHHHHHH-HHH--
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG-KLVPEDVIFALL-SKR--  134 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-~~ip~e~i~~Ll-~~~--  134 (219)
                      +++.|+|.|+.||||||+++.|++.+   |+.++-    .|+  +.++++++.+++.+.++ ..+++....-+. .++  
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~----trE--P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVL----TRE--PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE----EeC--CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999988   444442    233  56699999999998876 344443222111 112  


Q ss_pred             -----HHhccccCCCeEEEeCccCCH--HH----------HHHHHhh-C---CCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          135 -----LEEGYYRGESGFILDGIPRTR--IQ----------AVSLEFC-Y---TMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       135 -----l~~~~~~~~~g~IlDG~Pr~~--~q----------a~~l~~~-~---~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                           +... ...+.-+|.|-|-.+.  .|          ...+++. .   .||++++|++|+++.       ++|+.+
T Consensus        76 h~~~~i~pa-l~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~a-------l~R~~~  147 (208)
T COG0125          76 HLEEVIKPA-LKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVA-------LERIRK  147 (208)
T ss_pred             HHHHHHHHh-hcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHH-------HHHHHh
Confidence                 1111 1234568889775432  12          1222222 2   699999999999999       999999


Q ss_pred             CCCC
Q 027791          194 GSLC  197 (219)
Q Consensus       194 R~~~  197 (219)
                      |...
T Consensus       148 r~~~  151 (208)
T COG0125         148 RGEL  151 (208)
T ss_pred             cCCc
Confidence            8654

>PRK13948 shikimate kinase; Provisional

Probab=99.20  E-value=1.7e-10  Score=95.54  Aligned_cols=111  Identities=13%  Similarity=0.010  Sum_probs=73.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhcc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      .++..|+|+|.|||||||+++.||+++|.++|++|.++++...      ..+.+++. .|+....+....++..-+.   
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~Ge~~fR~~E~~~l~~l~~---   78 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLGEAYFRRCEAEVVRRLTR---   78 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhCHHHHHHHHHHHHHHHHh---
Confidence            4667899999999999999999999999999999988876532      23333332 2333233333333333221   


Q ss_pred             ccCCCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          140 YRGESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       140 ~~~~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                         ..+.||.   |.+...+..+.+.+   -..+|+|+++++++       .+|+.+
T Consensus        79 ---~~~~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~~e~l-------~~Rl~~  122 (182)
T PRK13948         79 ---LDYAVISLGGGTFMHEENRRKLLS---RGPVVVLWASPETI-------YERTRP  122 (182)
T ss_pred             ---cCCeEEECCCcEEcCHHHHHHHHc---CCeEEEEECCHHHH-------HHHhcC
Confidence               1234444   45555554444543   35799999999999       999953

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.20  E-value=2.4e-10  Score=90.20  Aligned_cols=109  Identities=18%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCCe
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESG  145 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~g  145 (219)
                      |+|+|+|||||||+++.|++.+|+++++.+++++.....  +..+....   .|    .+.....-.+.+...  ....+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~--~~~~~   70 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLL--LTKEN   70 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHH--hccCC
Confidence            789999999999999999999999999999988766532  22221111   11    122222111111111  11234


Q ss_pred             EEEeC---ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          146 FILDG---IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       146 ~IlDG---~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +|+++   +.......+.+   .....+|+|++|++++       .+|+.+|.
T Consensus        71 ~vi~~g~~~i~~~~~~~~~---~~~~~~i~l~~~~e~~-------~~R~~~r~  113 (154)
T cd00464          71 AVIATGGGAVLREENRRLL---LENGIVVWLDASPEEL-------LERLARDK  113 (154)
T ss_pred             cEEECCCCccCcHHHHHHH---HcCCeEEEEeCCHHHH-------HHHhccCC
Confidence            55552   22222222222   2356899999999999       99998875

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.19  E-value=2.2e-10  Score=94.72  Aligned_cols=121  Identities=15%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHH-HHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDV-IFALLSKRLE  136 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~-i~~Ll~~~l~  136 (219)
                      +++.|+|.|++||||||+++.|++.++.   .++..    + + +.+++.++.+++.+.. ........ ..-.+..+..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----R-E-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----e-C-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            4688999999999999999999998732   22211    1 1 2245677888887763 22222211 1111112211


Q ss_pred             hcc------ccCCCeEEEeCccCCH------------HHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          137 EGY------YRGESGFILDGIPRTR------------IQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       137 ~~~------~~~~~g~IlDG~Pr~~------------~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      ...      ...+..+|+|-++.+.            +....+...    ..||++|+|++|++++       ++|+.+|
T Consensus        76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~-------~~Rl~~R  148 (205)
T PRK00698         76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVG-------LARIRAR  148 (205)
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence            110      0234578999655432            112222221    4699999999999999       9999999


Q ss_pred             C
Q 027791          195 S  195 (219)
Q Consensus       195 ~  195 (219)
                      .
T Consensus       149 ~  149 (205)
T PRK00698        149 G  149 (205)
T ss_pred             C
Confidence            6

>TIGR00152 dephospho-CoA kinase

Probab=99.19  E-value=8.2e-11  Score=97.05  Aligned_cols=119  Identities=15%  Similarity=0.230  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc---------------
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP---------------  123 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip---------------  123 (219)
                      +|+|+|.+||||||+++.|++..|+++|+.|++.++.+..+.+..+.+.+.+.      +|. +.               
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~   79 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL   79 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence            47899999999999999999988899999999999999887766666554332      222 11               


Q ss_pred             ---HHHHHHHHHHHHHhcc--ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ---EDVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ---~e~i~~Ll~~~l~~~~--~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                         ++++..++.+.+.+..  ......+|+-+.|.-.+.  .+..  ..|.+|+++++++++       .+|+.+|.
T Consensus        80 ~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~--~~~~--~~D~vv~V~~~~~~~-------~~Rl~~R~  145 (188)
T TIGR00152        80 KWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN--KLRS--LCDRVIVVDVSPQLQ-------LERLMQRD  145 (188)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC--CcHH--hCCEEEEEECCHHHH-------HHHHHHcC
Confidence               1222222222222111  011112444445443221  1111  368999999999999       99999986

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.17  E-value=1.8e-10  Score=94.82  Aligned_cols=120  Identities=15%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHcCC--cccHHHHH--------H
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVIF--------A  129 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~--~ip~e~i~--------~  129 (219)
                      ++.|+|.|+|||||||+++.|++.++.   .++-.      ..+.+++.++.+++.+..+.  ...+....        .
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~   76 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE   76 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            688999999999999999999999844   33211      11234677777877754332  22221111        1


Q ss_pred             HHHHHHHhccccCCCeEEEeCcc----------CCHH--HHHHHH-hhC--CCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          130 LLSKRLEEGYYRGESGFILDGIP----------RTRI--QAVSLE-FCY--TMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       130 Ll~~~l~~~~~~~~~g~IlDG~P----------r~~~--qa~~l~-~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .+...+.... ..+.-+|+|.+.          +...  ....+. ...  .||++|+|+++++++       ++|+.+|
T Consensus        77 ~~~~~i~~~l-~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~-------~~R~~~r  148 (195)
T TIGR00041        77 HLEDKIKPAL-AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVA-------LERLRKR  148 (195)
T ss_pred             HHHHHHHHHH-hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence            1112222111 123457788543          2211  112222 122  399999999999999       9999888


Q ss_pred             CC
Q 027791          195 SL  196 (219)
Q Consensus       195 ~~  196 (219)
                      ..
T Consensus       149 ~~  150 (195)
T TIGR00041       149 GE  150 (195)
T ss_pred             CC
Confidence            54

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.17  E-value=4.8e-10  Score=90.65  Aligned_cols=109  Identities=15%  Similarity=0.106  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      ..|+|+|+|||||||+++.||+++|+++++.|.++.....  ...    .++++ .|...-.+...+++ +.+.      
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g--~~~----~~~~~~~g~~~~~~~e~~~~-~~~~------   69 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN--MTV----AEIVEREGWAGFRARESAAL-EAVT------   69 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC--CCH----HHHHHHHCHHHHHHHHHHHH-HHhc------
Confidence            4588999999999999999999999999999888766432  222    22221 12111111122222 1221      


Q ss_pred             CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ....|+. |  ++......+.+..   .+.+|+|++|++++       .+|+.+|.
T Consensus        70 ~~~~vi~~ggg~vl~~~~~~~l~~---~~~~v~l~~~~~~~-------~~Rl~~r~  115 (171)
T PRK03731         70 APSTVIATGGGIILTEENRHFMRN---NGIVIYLCAPVSVL-------ANRLEANP  115 (171)
T ss_pred             CCCeEEECCCCccCCHHHHHHHHh---CCEEEEEECCHHHH-------HHHHcccc
Confidence            1234443 3  4444444455543   56899999999999       99998764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.16  E-value=2.6e-10  Score=91.42  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .++.|+|+|+|||||||+++.|++++|+++++.+++++.....  ++...+.+   .|.....+....++.+....    
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~~---~g~~~~~~~~~~~~~~l~~~----   73 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFEE---EGEAAFRELEEEVLAELLAR----   73 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHHH---HCHHHHHHHHHHHHHHHHhc----
Confidence            5678999999999999999999999999999999887765322  22221111   12211112222332222221    


Q ss_pred             CCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                       ...+|..|  +.......+.+.   ....+|+|++|.+++       .+|+.+|.
T Consensus        74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~-------~~R~~~~~  118 (175)
T PRK00131         74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEEL-------LRRLRRDR  118 (175)
T ss_pred             -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHH-------HHHhcCCC
Confidence             22344444  222222233332   245899999999999       99998764

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.15  E-value=6.7e-11  Score=99.15  Aligned_cols=121  Identities=12%  Similarity=0.075  Sum_probs=74.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhH-HHHHHHHHcCCcccH----HH----------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPE----DV----------  126 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg-~~i~~~l~~g~~ip~----e~----------  126 (219)
                      .++.|++.|+|||||||+|+.|++++|+.++..+|++|+.+....+.+ .......+.|+.+++    .+          
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999876432221 111111111222221    11          


Q ss_pred             ----HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEe-ChhhhcccccchhhhhhcCCC
Q 027791          127 ----IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLF-LYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       127 ----i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~-~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                          +..++...+.     .+..+|+||......+.+.... . -..++++.+ +++..       .+|+..|..
T Consensus        82 v~~~L~~va~~~l~-----~G~sVIvEgv~l~p~~~~~~~~-~-~v~~i~l~v~d~e~l-------r~Rl~~R~~  142 (197)
T PRK12339         82 IMPGINRVIRRALL-----NGEDLVIESLYFHPPMIDENRT-N-NIRAFYLYIRDAELH-------RSRLADRIN  142 (197)
T ss_pred             HHHHHHHHHHHHHH-----cCCCEEEEecCcCHHHHHHHHh-c-CeEEEEEEeCCHHHH-------HHHHHHHhh
Confidence                1122222222     3457999997666555432221 1 235677776 46666       788888863

>PLN02422 dephospho-CoA kinase

Probab=99.14  E-value=3e-10  Score=97.50  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc---------------
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP---------------  123 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip---------------  123 (219)
                      .|.|+|.+||||||+++.|+ ++|+++|++|++.++.+.++++..+.+.+.+.      +|. +.               
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSDPSKR   80 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCCHHHH
Confidence            68999999999999999998 68999999999999999887776666655441      222 22               


Q ss_pred             ---HHHHHHHHHHHHHhc----cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ---EDVIFALLSKRLEEG----YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ---~e~i~~Ll~~~l~~~----~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                         +++++..+.+.+...    ......-+|+| .|.-.+ .. +.  ...|.||++++|+++.       ++|+.+|+
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E-~~-~~--~~~D~vI~V~a~~e~r-------i~RL~~R~  147 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE-TK-MD--KWTKPVVVVWVDPETQ-------LERLMARD  147 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh-cc-hh--hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence               134444444433211    00122345555 343222 11 11  1479999999999999       99999995

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.13  E-value=3.9e-10  Score=94.56  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc-----H--------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP-----E--------------  124 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip-----~--------------  124 (219)
                      ..|.|+|.+||||||+++.|++ +|+++|+.|++.++.+.++++..+++.+.+..+-..+     .              
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            4689999999999999999987 8999999999999998888877777776654332211     1              


Q ss_pred             ----HHHHHHHHHHHHh----ccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          125 ----DVIFALLSKRLEE----GYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       125 ----e~i~~Ll~~~l~~----~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                          ++++..+...+.+    ....+..-+++| .|.-.+..  +  ...+|.+|++++|+++.       ++|+.+|+
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~g--~--~~~~D~vi~V~a~~e~r-------i~Rl~~R~  147 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEKG--L--DRKMDLVVVVDVDVEER-------VRRLVEKR  147 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEcC--c--cccCCeEEEEECCHHHH-------HHHHHHcC
Confidence                1222333222221    100111234443 33211100  0  01479999999999999       99998884

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.12  E-value=1.3e-09  Score=88.96  Aligned_cols=119  Identities=10%  Similarity=0.009  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCC--cccHHHHH--------HH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVIF--------AL  130 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~--~ip~e~i~--------~L  130 (219)
                      +.|+|.|++||||||+++.|++.+   |..++....      +..++.++.+++++..+.  ........        ..
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999999998   666654432      223445677777766432  11111110        11


Q ss_pred             HHHHHHhccccCCCeEEEeCccCCH------------HHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          131 LSKRLEEGYYRGESGFILDGIPRTR------------IQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDG~Pr~~------------~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      +...+... ...+..+|+|-++.+.            .....+..    ...||.+|+|+++++++       ++|+.+|
T Consensus        75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~-------~~R~~~R  146 (200)
T cd01672          75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVG-------LARIEAR  146 (200)
T ss_pred             HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence            11112111 1235678889665321            12222221    23689999999999999       9999998


Q ss_pred             CC
Q 027791          195 SL  196 (219)
Q Consensus       195 ~~  196 (219)
                      ..
T Consensus       147 ~~  148 (200)
T cd01672         147 GR  148 (200)
T ss_pred             CC
Confidence            64

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK06547 hypothetical protein; Provisional

Probab=99.11  E-value=2e-10  Score=94.25  Aligned_cols=126  Identities=12%  Similarity=0.062  Sum_probs=73.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHH-HHcCCcccHHHHHHHHHHHHHhc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANA-VNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~-l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      +.+++.|.|.|++||||||+++.|++.++++++++|++....-. .....+.+.+. +..|+...-.  .+.........
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~   88 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDW   88 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceec--CCCCCCCCCCc
Confidence            35778999999999999999999999999999999987754211 01111222222 2223211000  00000000000


Q ss_pred             -cccCCCeEEEeCccCC-HHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          139 -YYRGESGFILDGIPRT-RIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       139 -~~~~~~g~IlDG~Pr~-~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                       ....+..+|++|.... ....+.+++ ....+.|++++|.++.       .+|+.+|..
T Consensus        89 ~~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr-------~~R~~~Rd~  140 (172)
T PRK06547         89 VSVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALR-------KERALARDP  140 (172)
T ss_pred             EEeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHH-------HHHHHhcCc
Confidence             0112356889986222 222222222 1223899999999999       999999963

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.10  E-value=8.7e-10  Score=88.46  Aligned_cols=111  Identities=15%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc----HHHHHHHHHHHHHhcccc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP----EDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip----~e~i~~Ll~~~l~~~~~~  141 (219)
                      |+++|+|||||||+++.|++.++.++++.|++......         +. ...+...+    .++...+. +.+......
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~   69 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------EK-MSAGIPLNDDDRWPWLQNLN-DASTAAAAK   69 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------HH-HHcCCCCChhhHHHHHHHHH-HHHHHHHhc
Confidence            57899999999999999999999999999886422100         00 00011111    11222211 111111111


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +...+|..++. .....+.+........+|+|++|++++       .+|+..|.
T Consensus        70 ~~~~Vi~~t~~-~~~~r~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~  115 (163)
T TIGR01313        70 NKVGIITCSAL-KRHYRDILREAEPNLHFIYLSGDKDVI-------LERMKARK  115 (163)
T ss_pred             CCCEEEEeccc-HHHHHHHHHhcCCCEEEEEEeCCHHHH-------HHHHHhcc
Confidence            22334444554 333344444333334579999999999       99999885

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.10  E-value=1.3e-10  Score=90.78  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=63.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      .|+|.|+|||||||+|+.|++++|+++++.+.+-.++.      ........      ....+...+.+.+.+.  ....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~------~~~~i~~~l~~~~~~~--~~~~   66 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVA------AIPEVRKALDERQREL--AKKP   66 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhc------ccHhHHHHHHHHHHHH--hhCC
Confidence            37899999999999999999999999999984322211      11111100      0011122222222221  1234


Q ss_pred             eEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          145 GFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       145 g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .||+||......    +  ....+++|+|++|+++.       ++|+.+|
T Consensus        67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r-------~~R~~~r  103 (147)
T cd02020          67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVR-------AKRRAKQ  103 (147)
T ss_pred             CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHH-------HHHHHHH
Confidence            699999742111    1  12368999999999999       8998874

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.09  E-value=2.7e-10  Score=94.23  Aligned_cols=119  Identities=18%  Similarity=0.235  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCccc---------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVP---------------  123 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip---------------  123 (219)
                      |.|.|+|..||||||+++.|++ +|+++|++|++.++.+.++.+..+.+.+.+..     ...+.               
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5789999999999999999987 99999999999999998888877777665431     11122               


Q ss_pred             ---HHHHHHHHHHHHHhcc--ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ---EDVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ---~e~i~~Ll~~~l~~~~--~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                         +++++.++.+.+.+..  .....-+|+| .|.-.+.  .+.  ..+|.||++.+|+++.       ++|+.+|+
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~~~--~~~D~vi~V~a~~e~r-------i~Rl~~R~  144 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--GLE--KLCDEVIVVYAPEEIR-------IKRLMERD  144 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TGG--GGSSEEEEEE--HHHH-------HHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--hHh--hhhceEEEEECCHHHH-------HHHHHhhC
Confidence               1344555444443321  1122456666 3432211  111  1479999999999999       99998884

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.09  E-value=5.7e-10  Score=96.49  Aligned_cols=121  Identities=12%  Similarity=0.064  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCcccH--------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVPE--------------  124 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip~--------------  124 (219)
                      ..|.|+|.+||||||+++.|.+++|+++|+.|.+.++.+.++++..+.+.+.+..     ...+..              
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            5789999999999999999999999999999999999988888777777654411     111221              


Q ss_pred             ----HHHHHHHHHHHHhcc-----------c--cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccch
Q 027791          125 ----DVIFALLSKRLEEGY-----------Y--RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVI  187 (219)
Q Consensus       125 ----e~i~~Ll~~~l~~~~-----------~--~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~  187 (219)
                          .+++..+..++.+..           .  ....-+|+| .|.-.+ .....  ...|.+|++++|+++.       
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E-~~~~~--~~~D~iv~V~a~~e~r-------  150 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFE-TKTFT--YFVSASVVVSCSEERQ-------  150 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhc-cCchh--hcCCeEEEEECCHHHH-------
Confidence                123333322221110           0  112245666 333222 11011  1359999999999999       


Q ss_pred             hhhhhcCC
Q 027791          188 LNEQVDGS  195 (219)
Q Consensus       188 ~~Rl~~R~  195 (219)
                      .+|+.+|+
T Consensus       151 i~RL~~R~  158 (244)
T PTZ00451        151 IERLRKRN  158 (244)
T ss_pred             HHHHHHcC
Confidence            99999884

>PRK13976 thymidylate kinase; Provisional

Probab=99.08  E-value=3e-09  Score=89.88  Aligned_cols=119  Identities=13%  Similarity=0.025  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCC-----CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHH-HHHHHHHHHh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI-FALLSKRLEE  137 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~-----~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i-~~Ll~~~l~~  137 (219)
                      +.|+|.|+.||||||+++.|++.|.-     .++    +.++  +.++++++.+++.+.....+.+... .-+...|.++
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~----~~~e--P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~   74 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVV----LTRE--PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH   74 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceE----EeeC--CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence            47899999999999999999998732     222    1222  3567889999988864222333221 1111122211


Q ss_pred             c------cccCCCeEEEeCccCCH------------HHHHHHHhh---CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          138 G------YYRGESGFILDGIPRTR------------IQAVSLEFC---YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       138 ~------~~~~~~g~IlDG~Pr~~------------~qa~~l~~~---~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .      ....+.-+|.|-|..+.            +....++..   ..||++|+|++|++++       ++|+.+++
T Consensus        75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a-------~~Ri~~~~  146 (209)
T PRK13976         75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELS-------LSRADKNG  146 (209)
T ss_pred             HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHH-------HHHhcccc
Confidence            0      01224567888775431            112222221   3699999999999999       99986554

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.06  E-value=7.1e-10  Score=93.49  Aligned_cols=122  Identities=12%  Similarity=0.116  Sum_probs=78.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-----HcCCccc-------------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-----NEGKLVP-------------  123 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-----~~g~~ip-------------  123 (219)
                      .|..|.|+|.+||||||+++.|++++|+++++.|.+.++.+.. .+..+.+.+.+     .+|. +.             
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~~   82 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESKE   82 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCHH
Confidence            4578999999999999999999999999999999999988765 34444444332     1221 11             


Q ss_pred             -----HHHHHHHHHHHHHhcccc-CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 -----EDVIFALLSKRLEEGYYR-GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 -----~e~i~~Ll~~~l~~~~~~-~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                           +++++..+.+++.+.... ...-+|+| .|.-.+..-.+.  ..+|.+|++++|+++.       ++|+.+|+
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ipLL~E~~~~~~--~~~D~vi~V~a~~e~r-------i~Rl~~Rd  150 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IPLLGPYNFRHY--DYLKKVIVIKADLETR-------IRRLMERD  150 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-echhhhccCchh--hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence                 134444444444322111 12345566 333222100001  1379999999999999       99999885

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.04  E-value=1.4e-09  Score=103.86  Aligned_cols=117  Identities=18%  Similarity=0.183  Sum_probs=76.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      |-+-.+|+|+|.|||||||+++.||+++|+++||+|+.+.+..      |+.+.+++. .|+....+.-.+++.+-... 
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~-   75 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED-   75 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            4567789999999999999999999999999999999888764      334445442 34443444444444332211 


Q ss_pred             cccCCCeEEEe--CccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          139 YYRGESGFILD--GIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       139 ~~~~~~g~IlD--G~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                          ...+|--  |.+.+.+..+.+.... .-..||||+++.+++       .+|+.++
T Consensus        76 ----~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l-------~~Rl~~~  123 (542)
T PRK14021         76 ----FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEA-------MERANRG  123 (542)
T ss_pred             ----CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHH-------HHHHhCC
Confidence                2233322  3455544444443221 224799999999999       9998643

>PRK07933 thymidylate kinase; Validated

Probab=99.02  E-value=2.1e-09  Score=90.99  Aligned_cols=119  Identities=16%  Similarity=0.050  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcC--Cc-ccHHHHHHHH--HHH-
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEG--KL-VPEDVIFALL--SKR-  134 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g--~~-ip~e~i~~Ll--~~~-  134 (219)
                      |.|+|.|+.||||||+++.|++.+   |.+++-+    +.....+++.++.+++.+...  .. ..... ..++  .+| 
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~-~~llf~a~R~   75 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYA-MATLFALDRA   75 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHH-HHHHHhhhhh
Confidence            579999999999999999999988   4444422    222113456677777776532  11 11111 1111  111 


Q ss_pred             -----HHhccccCCCeEEEeCccCCH--HH------------HHHHHhh-------CCCcEEEEEEeChhhhcccccchh
Q 027791          135 -----LEEGYYRGESGFILDGIPRTR--IQ------------AVSLEFC-------YTMALAFLFLFLYGCCVIIGSVIL  188 (219)
Q Consensus       135 -----l~~~~~~~~~g~IlDG~Pr~~--~q------------a~~l~~~-------~~pd~VI~L~~~~e~l~~~~~~~~  188 (219)
                           +... ...+.-+|.|.|..+.  .|            .+++...       ..||++|+|++|++++       +
T Consensus        76 ~~~~~I~p~-l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a-------~  147 (213)
T PRK07933         76 GARDELAGL-LAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELA-------A  147 (213)
T ss_pred             hhHHHHHHH-HhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHH-------H
Confidence                 2111 1224568889876543  11            1122211       2699999999999999       9


Q ss_pred             hhhhcCC
Q 027791          189 NEQVDGS  195 (219)
Q Consensus       189 ~Rl~~R~  195 (219)
                      +|+.+|.
T Consensus       148 ~Ri~~R~  154 (213)
T PRK07933        148 ERARRRA  154 (213)
T ss_pred             HHHHhhc
Confidence            9998885

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.02  E-value=1.2e-09  Score=100.52  Aligned_cols=119  Identities=16%  Similarity=0.191  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----Cccc---------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVP---------------  123 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip---------------  123 (219)
                      .+|.|+|.+||||||+++.|++ +|+++|+.|++.++.+..++.....+.+.+..+     ..+.               
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999986 899999999999998887765555554433211     1111               


Q ss_pred             ---HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          124 ---EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       124 ---~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                         +.++..++..++.+... ..+..+|+.+.|.-.+..  +.  ..+|.+|++++|.++.       ++|+.+|
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~--~~--~~~D~iI~V~ap~e~r-------i~Rl~~r  144 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESG--MA--PLFHLVVVVDADVEVR-------VRRLVEQ  144 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCC--ch--hhCCEEEEEECCHHHH-------HHHHHhc
Confidence               12334444433332210 123457777766433211  11  1369999999999999       9999874

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.01  E-value=1.4e-09  Score=96.82  Aligned_cols=120  Identities=16%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHH
Q 027791           56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKR  134 (219)
Q Consensus        56 ~~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~  134 (219)
                      ....+.++..|+|+|+|||||||+++.|++++|+++++++..+.+..  +.+.    .+.+. .|+....+.-..++.+.
T Consensus       126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G~~i----~ei~~~~G~~~fr~~e~~~l~~l  199 (309)
T PRK08154        126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--GLSV----SEIFALYGQEGYRRLERRALERL  199 (309)
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--CCCH----HHHHHHHCHHHHHHHHHHHHHHH
Confidence            34456778899999999999999999999999999999987766542  2222    22221 23222222323333333


Q ss_pred             HHhccccCCCeEEEeCc--cCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          135 LEEGYYRGESGFILDGI--PRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~--Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +...    ...+|-.|.  +......+.+   .....+|+|++|++++       .+|+.+|.
T Consensus       200 l~~~----~~~VI~~Ggg~v~~~~~~~~l---~~~~~~V~L~a~~e~~-------~~Rl~~r~  248 (309)
T PRK08154        200 IAEH----EEMVLATGGGIVSEPATFDLL---LSHCYTVWLKASPEEH-------MARVRAQG  248 (309)
T ss_pred             HhhC----CCEEEECCCchhCCHHHHHHH---HhCCEEEEEECCHHHH-------HHHHhcCC
Confidence            3221    222333332  2222222222   2245799999999999       99998763

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.00  E-value=2.8e-09  Score=87.15  Aligned_cols=112  Identities=15%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      ...|+|+|++||||||+++.|++.+++++++.|..+.+...  .++......   .|+..-.+.-.+++.. +..     
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~~~~~~---~g~~~fr~~e~~~l~~-l~~-----   72 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIGWVFDV---EGEEGFRDREEKVINE-LTE-----   72 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHhHHHHH---hCHHHHHHHHHHHHHH-HHh-----
Confidence            45799999999999999999999999999999886665432  111111110   1211111111222222 222     


Q ss_pred             CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..++|+. |  .+.+....+.+..   .+.+|+|++|.+++       ++|+..+.
T Consensus        73 ~~~~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~~e~~-------~~Ri~~~~  118 (172)
T PRK05057         73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQ-------LARTQRDK  118 (172)
T ss_pred             CCCEEEEcCCchhCCHHHHHHHHh---CCEEEEEeCCHHHH-------HHHHhCCC
Confidence            1234443 2  2333333344443   46899999999999       99997553

>PLN02199 shikimate kinase

Probab=98.98  E-value=5.6e-09  Score=92.45  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=72.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      ++..|+|+|.+||||||+++.||+.+|+++|++|+++++... +.+    +.+++. .|+....+.-..++.+ +..   
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~s----I~eIf~~~GE~~FR~~E~e~L~~-L~~---  171 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTS----VAEIFVHHGENFFRGKETDALKK-LSS---  171 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCC----HHHHHHHhCHHHHHHHHHHHHHH-HHh---
Confidence            456899999999999999999999999999999999988643 222    233332 2433333333333333 221   


Q ss_pred             cCCCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          141 RGESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       141 ~~~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                        ..+.||.   |.+...+..+.+.    -..||+|+++.|++       ++|+.+
T Consensus       172 --~~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l-------~~RL~~  214 (303)
T PLN02199        172 --RYQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEAL-------AHRIAA  214 (303)
T ss_pred             --cCCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHH-------HHHHhh
Confidence              1233443   3343333333343    25799999999999       999984

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.97  E-value=1.3e-09  Score=91.17  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=76.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH------cCCccc----------------
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN------EGKLVP----------------  123 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~------~g~~ip----------------  123 (219)
                      |.|+|++||||||+++.|+ ++|+++|+.|++.++.+.++.+..+.+.+.+.      +|. +.                
T Consensus         2 i~itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          2 IGITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             EEEECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCHHHHH
Confidence            6899999999999999986 47999999999999988877776666655431      122 11                


Q ss_pred             --HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 --EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 --~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                        +++++.++.+.+.+... .....+|+-..|.-.+. ...   ..+|.+|++++|+++.       .+|+.+|.
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~-~~~---~~~D~vi~V~a~~e~r-------~~RL~~R~  143 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFET-DAY---TLCDATVTVDSDPEES-------ILRTISRD  143 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEc-Cch---hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence              13444444433322110 01123444445543221 100   1369999999999999       99999984

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.95  E-value=7.3e-09  Score=84.27  Aligned_cols=108  Identities=16%  Similarity=0.004  Sum_probs=63.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHH----HHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV----IFALL  131 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~----i~~Ll  131 (219)
                      .+|..|+|+|+|||||||+++.|++++.     ..+++. |-+++.+...             +.....+.    ....+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~-------------~~~~~~~~~~~~~~~~l   70 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHY-------------GYDKQSRIEMALKRAKL   70 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCC-------------CCCHHHHHHHHHHHHHH
Confidence            4677899999999999999999999885     455544 3445433211             00001111    11112


Q ss_pred             HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          132 SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ...+.    ..+..+|+||........+.......+..+|+|++|++++       .+|..+
T Consensus        71 ~~~l~----~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~-------~~R~~~  121 (176)
T PRK05541         71 AKFLA----DQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEEL-------IRRDQK  121 (176)
T ss_pred             HHHHH----hCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHH-------HHhchh
Confidence            22222    1245688887532111112222234556899999999999       999764

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.95  E-value=3.9e-09  Score=88.83  Aligned_cols=123  Identities=10%  Similarity=0.038  Sum_probs=76.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-----H---cCC-ccc--------
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-----N---EGK-LVP--------  123 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-----~---~g~-~ip--------  123 (219)
                      +.++.|.|+|++||||||+++.|++ +|+++++.|.+.++.+.++.+..+.+...+     .   .|. .+.        
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v   81 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV   81 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence            3557899999999999999999985 999999999999888776555444443322     1   111 021        


Q ss_pred             ----------HHHHHHHHHHHHHhcc--c-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhh
Q 027791          124 ----------EDVIFALLSKRLEEGY--Y-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNE  190 (219)
Q Consensus       124 ----------~e~i~~Ll~~~l~~~~--~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~R  190 (219)
                                +.+++..+.+.+.+..  + ..+..+|+-+.|.-.+. . +  ...+|.+|++++|++++       .+|
T Consensus        82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~-~-~--~~~~d~ii~V~a~~e~~-------~~R  150 (208)
T PRK14731         82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES-G-G--DAGLDFIVVVAADTELR-------LER  150 (208)
T ss_pred             hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec-C-c--hhcCCeEEEEECCHHHH-------HHH
Confidence                      1223333333332211  0 11224555445432221 1 1  12469999999999999       999


Q ss_pred             hhcCC
Q 027791          191 QVDGS  195 (219)
Q Consensus       191 l~~R~  195 (219)
                      +.+|.
T Consensus       151 l~~R~  155 (208)
T PRK14731        151 AVQRG  155 (208)
T ss_pred             HHHcC
Confidence            99985

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.94  E-value=8e-09  Score=84.21  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=67.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHH-cC--CcccHHH---HHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVN-EG--KLVPEDV---IFALLSKR  134 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~-~g--~~ip~e~---i~~Ll~~~  134 (219)
                      +..|++.|+|||||||+++.|++.++.+  |++.|++... +.......   .+.+. ++  ...+++.   ....+...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhccc---ccccccCccCCcccchHHHHHHHHHHHH
Confidence            4578999999999999999999998665  4566665433 22111000   00000 11  1111111   22222222


Q ss_pred             HHhccccCCCeEEEeC-ccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          135 LEEGYYRGESGFILDG-IPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG-~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +.... ..+..+|+|. ++......+.+.... .+...|+++||.+++       .+|+.+|.
T Consensus        78 ~~~~l-~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l-------~~R~~~R~  132 (175)
T cd00227          78 VAAMA-RAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVA-------EGRETARG  132 (175)
T ss_pred             HHHHH-hCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHH-------HHHHHhcC
Confidence            22211 2356789996 442222223333222 345799999999999       99999884

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.93  E-value=9.7e-09  Score=88.32  Aligned_cols=108  Identities=17%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      .|+|+|+|||||||+|+.|++.+   +.  .+++. |.+++.......   ...+.       ..+....++...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~-------~~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEF-------IRDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHH-------HHHHHHHHHHHHHhC--
Confidence            37899999999999999999987   33  44444 445554321111   00111       112233344444433  


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                         +..+|+|+..........+.    ....+..+|++++|.|++       ++|..+|.
T Consensus        68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~-------~~Rn~~R~  117 (249)
T TIGR03574        68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTL-------LRRNIERG  117 (249)
T ss_pred             ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHH-------HHHHHhCC
Confidence               34589998754433333332    223467899999999999       99988774

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.92  E-value=6.7e-09  Score=85.51  Aligned_cols=119  Identities=14%  Similarity=0.070  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-----
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-----  139 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~-----  139 (219)
                      .|+|.|++||||||+++.|++.+++.++.-..  .. -....++   ++....+...........++..+.++..     
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~--~~-~~~~~~~---l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV--EP-DVEGNPF---LEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccccccc--cc-cCCCCCC---HHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            37899999999999999999988876553211  00 0011111   1222211100111111112222222211     


Q ss_pred             ccCCCeEEEeCccCCHH--------H-------HH----HHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          140 YRGESGFILDGIPRTRI--------Q-------AV----SLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~--------q-------a~----~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      ...+..+|+|.+|.+..        +       .+    .+..    ...||++|+|+++++++       ++|+.+|..
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~-------~~Ri~~R~r  147 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETC-------LKRIKKRGR  147 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHH-------HHHHHhcCc
Confidence            11356789998876421        0       11    1111    13699999999999999       999988864

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.92  E-value=5.3e-09  Score=98.66  Aligned_cols=109  Identities=13%  Similarity=0.143  Sum_probs=67.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      |+|+|+|+|||||||+++.|++++|++++++|+++.+..  +.+.    .+++. .|+....+.-.+.+++-...     
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~--g~~i----~~i~~~~Ge~~fr~~E~~~l~~l~~~-----   69 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE--GRSV----RRIFEEDGEEYFRLKEKELLRELVER-----   69 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc--CCCH----HHHHHHhhhHHHHHHHHHHHHHHhhc-----
Confidence            579999999999999999999999999999999887742  2222    22221 23322223333333322111     


Q ss_pred             CCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          143 ESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       143 ~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      ...+|-.|  .+.+....+.+..    +.+|+|+++++++       .+|+.++
T Consensus        70 ~~~Vis~Gggvv~~~~~r~~l~~----~~vI~L~as~e~l-------~~Rl~~~  112 (488)
T PRK13951         70 DNVVVATGGGVVIDPENRELLKK----EKTLFLYAPPEVL-------MERVTTE  112 (488)
T ss_pred             CCEEEECCCccccChHHHHHHhc----CeEEEEECCHHHH-------HHHhccC
Confidence            12222233  2333334444432    4699999999999       9999764

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.92  E-value=1.7e-08  Score=85.53  Aligned_cols=124  Identities=11%  Similarity=-0.004  Sum_probs=68.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccc-hhHHhhc-CCCchhHHH------HHHHHHcCC---cccHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMG-SLVRQEL-SPRSALYKQ------IANAVNEGK---LVPEDVIFALLSK  133 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~-dllr~~~-~~~s~lg~~------i~~~l~~g~---~ip~e~i~~Ll~~  133 (219)
                      .|+|.|..||||||+++.|+++++..++... ....... +.++++++.      ++.+..+..   ..+.....-++..
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            3789999999999999999999987655332 1111000 011222221      333333222   1222222222233


Q ss_pred             HHHhc------cccCCCeEEEeCccCCHH-H--------------HHHHH--------hhCCCcEEEEEEeChhhhcccc
Q 027791          134 RLEEG------YYRGESGFILDGIPRTRI-Q--------------AVSLE--------FCYTMALAFLFLFLYGCCVIIG  184 (219)
Q Consensus       134 ~l~~~------~~~~~~g~IlDG~Pr~~~-q--------------a~~l~--------~~~~pd~VI~L~~~~e~l~~~~  184 (219)
                      ++++.      ....+..+|+|.++.+.. .              .+.+.        ....||++|+|++|++++    
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~----  156 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEV----  156 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHH----
Confidence            33221      012345789998854321 0              11111        113699999999999999    


Q ss_pred             cchhhhhhcCC
Q 027791          185 SVILNEQVDGS  195 (219)
Q Consensus       185 ~~~~~Rl~~R~  195 (219)
                         ++|+.+|.
T Consensus       157 ---~~Ri~~R~  164 (219)
T cd02030         157 ---QKRIKKRG  164 (219)
T ss_pred             ---HHHHHHcC
Confidence               99998885

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.89  E-value=8e-10  Score=84.03  Aligned_cols=114  Identities=15%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-ccCCC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGES  144 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~-~~~~~  144 (219)
                      |+|.|+|||||||+++.|+++++..++   +..............   ...........+....++....+... .....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIR---DIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRRMNKGR   74 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHH---HHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHH---HHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence            689999999999999999999822222   111111110000000   00112233333333333322222110 12456


Q ss_pred             eEEEeCccCCHHHHHHHHhhCCCcEE-EEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          145 GFILDGIPRTRIQAVSLEFCYTMALA-FLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       145 g~IlDG~Pr~~~qa~~l~~~~~pd~V-I~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                      .+|+|+........      ...+.. |+|+||++++       .+|+.+|....
T Consensus        75 ~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~-------~~R~~~R~~~~  116 (129)
T PF13238_consen   75 NIIIDGILSNLELE------RLFDIKFIFLDCSPEEL-------RKRLKKRGRKE  116 (129)
T ss_dssp             CEEEEESSEEECET------TEEEESSEEEE--HHHH-------HHHHHCTTTSC
T ss_pred             cEEEecccchhccc------ccceeeEEEEECCHHHH-------HHHHHhCCCCC
Confidence            78999875432111      012223 9999999999       99999986543

...

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.88  E-value=2.3e-08  Score=82.20  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccH-------HHHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-------DVIFALLSKRLE  136 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~-------e~i~~Ll~~~l~  136 (219)
                      -.++++|++||||||+++.|+..++..+++.+++....         .++.. ..|....+       ..+.+.......
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~   73 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDKM-SQGIPLTDEDRLPWLERLNDASYSLYK   73 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHHH-hcCCCCCcccchHHHHHHHHHHHHHHh
Confidence            46889999999999999999999999888877652210         11111 12221111       122222222111


Q ss_pred             hccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          137 EGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                          ....|+|+..+. ...+.+.+.+...+..+|+|+++++++       .+|+.+|.
T Consensus        74 ----~~~~g~iv~s~~-~~~~R~~~r~~~~~~~~v~l~a~~~~l-------~~Rl~~R~  120 (176)
T PRK09825         74 ----KNETGFIVCSSL-KKQYRDILRKSSPNVHFLWLDGDYETI-------LARMQRRA  120 (176)
T ss_pred             ----cCCCEEEEEEec-CHHHHHHHHhhCCCEEEEEEeCCHHHH-------HHHHhccc
Confidence                135688875553 333445555555667899999999999       99999996

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.88  E-value=9.3e-09  Score=84.27  Aligned_cols=118  Identities=12%  Similarity=0.030  Sum_probs=73.7

Q ss_pred             EEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH-HHH-------HHhcc
Q 027791           68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKR-------LEEGY  139 (219)
Q Consensus        68 l~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll-~~~-------l~~~~  139 (219)
                      |.|++||||||+++.|++.+.-..+..   +...-+..++.++.+++++......+.....-+. ..+       +... 
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~-   76 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPA-   76 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHH-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            689999999999999999884443321   1112245678999999998855444443222221 111       1111 


Q ss_pred             ccCCCeEEEeCccCC------------HHHHHHHH-hhC--CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          140 YRGESGFILDGIPRT------------RIQAVSLE-FCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~------------~~qa~~l~-~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      ...+.-+|+|-|..+            .+....+. ...  .||++|+|++++++.       ++|+.+|..
T Consensus        77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~-------~~R~~~r~~  141 (186)
T PF02223_consen   77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEA-------LKRIAKRGE  141 (186)
T ss_dssp             HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHH-------HHHHHHTSS
T ss_pred             HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHH-------HHHHHcCCc
Confidence            123567888965321            22222222 223  899999999999999       999999976

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.83  E-value=9e-09  Score=82.81  Aligned_cols=103  Identities=17%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             CCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccCCCeEEEe-
Q 027791           72 PGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRGESGFILD-  149 (219)
Q Consensus        72 PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~~~g~IlD-  149 (219)
                      |||||||+++.||+.+|++++++|+++.+...      ..+.+++. .|+....+.-..++.+-+.     .+..+|-- 
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~-----~~~~VIa~G   69 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLK-----ENNCVIACG   69 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHC-----SSSEEEEE-
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhc-----cCcEEEeCC
Confidence            79999999999999999999999998877532      33334332 2222222233333332222     12333332 


Q ss_pred             -CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          150 -GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       150 -G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                       |.+...+..+.+.+   ...||+|+.+.+++       .+|+..+.
T Consensus        70 GG~~~~~~~~~~L~~---~g~vI~L~~~~~~l-------~~Rl~~~~  106 (158)
T PF01202_consen   70 GGIVLKEENRELLKE---NGLVIYLDADPEEL-------AERLRARD  106 (158)
T ss_dssp             TTGGGSHHHHHHHHH---HSEEEEEE--HHHH-------HHHHHHHC
T ss_pred             CCCcCcHHHHHHHHh---CCEEEEEeCCHHHH-------HHHHhCCC
Confidence             46667776666763   35799999999999       99996554

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.80  E-value=4.2e-08  Score=79.51  Aligned_cols=105  Identities=10%  Similarity=0.025  Sum_probs=61.5

Q ss_pred             EcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHH-------HHHHHHHHHHHhcccc
Q 027791           69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSKRLEEGYYR  141 (219)
Q Consensus        69 ~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e-------~i~~Ll~~~l~~~~~~  141 (219)
                      +|++||||||+++.|++.+|.++++.|.+.....         ++. ...|....++       .+.........    .
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~   66 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQR----T   66 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHH----c
Confidence            5999999999999999999999998865421100         000 0011111111       11111111111    1


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ....+|+ .......+.+.+.+...+..+|+|++|++++       .+|+.+|.
T Consensus        67 ~~~~viv-~s~~~~~~r~~~~~~~~~~~~v~l~a~~~~l-------~~Rl~~R~  112 (163)
T PRK11545         67 NKVSLIV-CSALKKHYRDLLREGNPNLSFIYLKGDFDVI-------ESRLKARK  112 (163)
T ss_pred             CCceEEE-EecchHHHHHHHHccCCCEEEEEEECCHHHH-------HHHHHhcc
Confidence            2334455 3223334445555545567899999999999       99999996

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=98.80  E-value=6.1e-08  Score=81.25  Aligned_cols=119  Identities=18%  Similarity=0.205  Sum_probs=81.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc-----ccHH-------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPED-------------  125 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-----ip~e-------------  125 (219)
                      ..|-++|..+|||||+++.+- .+|+++|+.|-+.|+...+++|..+.+.+.+...-+     +..+             
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            457799999999999999985 999999999999999999999999888876643211     1111             


Q ss_pred             -----HHHHHHHHHH----HhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          126 -----VIFALLSKRL----EEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       126 -----~i~~Ll~~~l----~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                           ++...+...|    ......+.+-+|+| .|.-.+- . +..  ....+|.+.||.++.       ++|+..|+
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~-~-~~~--~~~~tvvV~cd~~~Q-------l~Rl~~Rd  147 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA-K-LLK--ICHKTVVVTCDEELQ-------LERLVERD  147 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH-h-HHh--heeeEEEEEECcHHH-------HHHHHHhc
Confidence                 1222222222    22122344445555 5544332 2 222  256799999999999       99999887

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=2.6e-08  Score=80.48  Aligned_cols=114  Identities=17%  Similarity=0.164  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHH---HHHhccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK---RLEEGYY  140 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~---~l~~~~~  140 (219)
                      -.|+++|+.||||||+++.|++++++++++.||+--.          .-.+.+.+|..+.|+-....|++   ...... 
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l-   81 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRKAL-   81 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHHHh-
Confidence            3678999999999999999999999999999886322          22455777887777543333321   111111 


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhhC----------CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFCY----------TMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~~----------~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ....++|+-.......+.+++.+.+          .--.+|+|.++.+++       ..|+.+|.
T Consensus        82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi-------~~Rl~~R~  139 (191)
T KOG3354|consen   82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVI-------LKRLKKRK  139 (191)
T ss_pred             hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHH-------HHHHhhcc
Confidence            1357899977655556667775522          123689999999999       99999996

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.75  E-value=4.4e-08  Score=81.87  Aligned_cols=124  Identities=13%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~  137 (219)
                      .++..|.|.|++||||||+++.|++.+   .+.+++.|+.......  .+..+............+.+.+.+.+..-...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~   81 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH--LSFEERVKTNYDHPDAFDHDLLIEHLKALKAG   81 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc--CCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence            578899999999999999999999998   3456778776543211  01000000000000111112222222211110


Q ss_pred             c-------------------cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          138 G-------------------YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       138 ~-------------------~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .                   ......-+|+||...-..  ..+.  ..+|.+|++++|++++       ++|...|.+.
T Consensus        82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~-------~~R~~~Rd~~  149 (209)
T PRK05480         82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIR-------LIRRLKRDVN  149 (209)
T ss_pred             CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHH-------HHHHHhhcch
Confidence            0                   001223578898743211  1111  1368999999999999       9999888753

>PRK06696 uridine kinase; Validated

Probab=98.75  E-value=1.6e-08  Score=85.81  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCe--eccchhHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPH--ISMGSLVRQ  100 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~--Is~~dllr~  100 (219)
                      .++..|.|.|++||||||+|+.|++.+   |.++  +++||+...
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~   64 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP   64 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence            467899999999999999999999998   5555  458877643

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.72  E-value=4.1e-08  Score=81.72  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=32.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhh
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQE  101 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~  101 (219)
                      |.|.|+|||||||+|+.|++.+ ++.+|++|++....
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~   38 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE   38 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence            6789999999999999999999 79999999987653

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.71  E-value=1.5e-07  Score=77.55  Aligned_cols=116  Identities=9%  Similarity=0.009  Sum_probs=65.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC-----chhHHHHHHHHHcCCcccHHHHH-----H---H
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-----SALYKQIANAVNEGKLVPEDVIF-----A---L  130 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~-----s~lg~~i~~~l~~g~~ip~e~i~-----~---L  130 (219)
                      ..++|+||+||||||+++.|+..++..++..+..+.......     ...++.....++++... ..+..     .   -
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~~   81 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGIE   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcHH
Confidence            478999999999999999999988766555444333221110     01123333334443221 11110     0   0


Q ss_pred             HHHHHHhccccCCCeEEEeCccCCHHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          131 LSKRLEEGYYRGESGFILDGIPRTRIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +...+..     +..+|+||.   ......+.. ...+..+|+|++|.+++       .+|+.+|.
T Consensus        82 ~~~~l~~-----g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l-------~~RL~~R~  132 (186)
T PRK10078         82 IDLWLHA-----GFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEIL-------RQRLENRG  132 (186)
T ss_pred             HHHHHhC-----CCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHH-------HHHHHHhC
Confidence            2223322     345888877   222222222 23456789999999999       99998773

>TIGR00235 udk uridine kinase

Probab=98.70  E-value=4.6e-08  Score=81.86  Aligned_cols=127  Identities=16%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhHHhhcCCC----------ch--h-HHHHHH---HHHcCC
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPR----------SA--L-YKQIAN---AVNEGK  120 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dllr~~~~~~----------s~--l-g~~i~~---~l~~g~  120 (219)
                      +.++..|.|.|++||||||+++.|+..++   +.+++.|+.+.......          .+  . ...+.+   .+.+|+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~   82 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS   82 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence            35778899999999999999999998875   56777776543210000          00  0 000000   011221


Q ss_pred             cccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          121 LVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       121 ~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .+.-.........+..+. ......-+|+||++.-.+  +.+..  ..|.+|+++++.++.       +.|+.+|.+-
T Consensus        83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~~--~~d~~I~v~~~~~~~-------l~R~~~R~~~  149 (207)
T TIGR00235        83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLRD--LMDLKIFVDTPLDIR-------LIRRIERDIN  149 (207)
T ss_pred             CEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHHH--hCCEEEEEECChhHH-------HHHHHHHHHH
Confidence            111000000000000000 001234588999865322  12222  368999999999999       9998888643

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.70  E-value=9.1e-08  Score=79.69  Aligned_cols=115  Identities=13%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc-------cHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV-------PEDVIFAL  130 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i-------p~e~i~~L  130 (219)
                      ..|..+++.|+|||||||++..+.+.+   ++.+|+.|++ +...+    ....+...  .....       ...+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p----~~~~~~~~--~~~~~~~~~~~~a~~~~~~~   85 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHP----DYDELLKA--DPDEASELTQKEASRLAEKL   85 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGST----THHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhcc----chhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence            578889999999999999999999987   7788888764 44433    22222111  01111       11234444


Q ss_pred             HHHHHHhccccCCCeEEEeCccCCHHHHH-HH---HhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          131 LSKRLEEGYYRGESGFILDGIPRTRIQAV-SL---EFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDG~Pr~~~qa~-~l---~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      +...+.+     ...+|+||...+.+... .+   .+.+.--.++++.+++++.       ++|...|
T Consensus        86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s-------~~rv~~R  141 (199)
T PF06414_consen   86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELS-------IERVRQR  141 (199)
T ss_dssp             HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHH-------HHHHHHH
T ss_pred             HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHH-------HHHHHHH
Confidence            4444443     45799999766655544 22   3323334678888999999       7777665

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1.1e-07  Score=76.29  Aligned_cols=109  Identities=12%  Similarity=0.022  Sum_probs=73.8

Q ss_pred             EcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH---HHHHHhccccCCCe
Q 027791           69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL---SKRLEEGYYRGESG  145 (219)
Q Consensus        69 ~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll---~~~l~~~~~~~~~g  145 (219)
                      +|..||||||+++.||+++|..+|+-|||--.          .-.+.+.+|.++.|+-....|   ..++.+.. ..+..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~----------aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~   69 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPP----------ANIEKMSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH   69 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCH----------HHHHHHhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence            58999999999999999999999998876321          112346788888886544433   33443322 22334


Q ss_pred             EEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          146 FILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       146 ~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .|+-.......+.+.+....+--.+|||+.+.+++       ++|+..|.
T Consensus        70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i-------~~Rm~~R~  112 (161)
T COG3265          70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLI-------LERMKARK  112 (161)
T ss_pred             eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHH-------HHHHHhcc
Confidence            55554444444555554433224689999999999       99999886

>PRK07667 uridine kinase; Provisional

Probab=98.69  E-value=4.6e-08  Score=81.26  Aligned_cols=122  Identities=4%  Similarity=-0.056  Sum_probs=67.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCC----Cchh-------------HHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSP----RSAL-------------YKQIANAVNEG  119 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~----~s~l-------------g~~i~~~l~~g  119 (219)
                      ....|.|.|+|||||||+++.|++.+     ++.+++.++.+......    ..+.             ...+-..+.++
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~   95 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE   95 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            33788999999999999999999986     34588999876543311    0100             01111112222


Q ss_pred             CcccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          120 KLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       120 ~~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +.+.-..+........... ......-+|+||.-..  +.. +..  ..|.+|++++|+++.       ++|+.+|.
T Consensus        96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~--~~~-~~~--~~d~~v~V~~~~~~~-------~~R~~~r~  160 (193)
T PRK07667         96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQ--RKE-WRD--FFHYMVYLDCPRETR-------FLRESEET  160 (193)
T ss_pred             CeEEEeeeccccccccccceecCCCCEEEEEehhhh--hhh-HHh--hceEEEEEECCHHHH-------HHHHhccc
Confidence            2111000000000000000 0012356788986421  121 222  369999999999999       99998874

>TIGR00017 cmk cytidylate kinase

Probab=98.68  E-value=1.1e-07  Score=80.93  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      ++.|.|.||+||||||+++.|++++++++++.|+++|..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            367999999999999999999999999999999988755

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>smart00072 GuKc Guanylate kinase homologues

Probab=98.66  E-value=3.8e-08  Score=81.00  Aligned_cols=117  Identities=13%  Similarity=0.015  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc----CCCeeccchhHHhhcCCCchh----HHHHHHHHHcCCcccHHH--------H
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLVRQELSPRSAL----YKQIANAVNEGKLVPEDV--------I  127 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l----g~~~Is~~dllr~~~~~~s~l----g~~i~~~l~~g~~ip~e~--------i  127 (219)
                      ..|+|+||+||||+|+++.|.+++    ...+..+..-.|..-..+...    -+++.+.+++|..+....        -
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~   82 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS   82 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence            468899999999999999999985    223322322222211112221    255666677776554321        1


Q ss_pred             HHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEE-eChhhhcccccchhhhhhcCC
Q 027791          128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFL-FLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       128 ~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~-~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+.+.+.+     ++.+|+|+.|....+.....  ..| .+|++. .+.+.+       .+|+.+|.
T Consensus        83 ~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~~--~~~-~vIfi~~~s~~~l-------~~rl~~R~  136 (184)
T smart00072       83 KETIRQVAEQ-----GKHCLLDIDPQGVKQLRKAQ--LYP-IVIFIAPPSSEEL-------ERRLRGRG  136 (184)
T ss_pred             HHHHHHHHHc-----CCeEEEEECHHHHHHHHHhC--CCc-EEEEEeCcCHHHH-------HHHHHhcC
Confidence            2233444432     46799999987776665432  223 789998 555567       88998874

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.65  E-value=1.8e-07  Score=88.90  Aligned_cols=101  Identities=12%  Similarity=0.096  Sum_probs=73.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      +.++..|++.|+|||||||+|+.+++.+|+.+|+.|++- .                       -+.........+.+  
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~--  419 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ--  419 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC--
Confidence            356788999999999999999999999999999997641 1                       01122333444443  


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                         +..+|+|..-.+..+.+.+.+    ...+-..|+|++|.+++       .+|...|..
T Consensus       420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~-------~~Rn~~R~~  470 (526)
T TIGR01663       420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQA-------KHNIAFREL  470 (526)
T ss_pred             ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH-------HHHHHhhcc
Confidence               467999986666555444433    23456799999999999       999998865

Note that the EC number for the kinase function is: 2.7.1.78

>PRK12338 hypothetical protein; Provisional

Probab=98.65  E-value=3.7e-07  Score=81.80  Aligned_cols=43  Identities=16%  Similarity=0.311  Sum_probs=38.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP  104 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~  104 (219)
                      +|..|++.|+|||||||+|+.||+++|+.++..+|.+|+.+..
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            5678999999999999999999999999999888899987653

>PHA03132 thymidine kinase; Provisional

Probab=98.64  E-value=7.1e-07  Score=85.50  Aligned_cols=123  Identities=15%  Similarity=0.059  Sum_probs=74.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC----chhHHHHHHHHHcCCc--cc-HHHHH------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKL--VP-EDVIF------  128 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~----s~lg~~i~~~l~~g~~--ip-~e~i~------  128 (219)
                      ++++|+|.|+.||||||+++.|++.+|..++.+.    +....+    +..++.+.+.+.++..  +. ...+.      
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~----EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F  331 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFP----EPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF  331 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEe----CCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999866655432    222111    2356677776654421  22 21111      


Q ss_pred             ----HHHHHHHHhc---------cccCCCeEEEeCccCCHHH-----------------HHHHHhh--CCCcEEEEEEeC
Q 027791          129 ----ALLSKRLEEG---------YYRGESGFILDGIPRTRIQ-----------------AVSLEFC--YTMALAFLFLFL  176 (219)
Q Consensus       129 ----~Ll~~~l~~~---------~~~~~~g~IlDG~Pr~~~q-----------------a~~l~~~--~~pd~VI~L~~~  176 (219)
                          .++..+++..         ....+.-+|+|-++.+..-                 ...+...  ..||++|+|+++
T Consensus       332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~  411 (580)
T PHA03132        332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN  411 (580)
T ss_pred             hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence                1111222111         1123456788987643211                 1111221  258999999999


Q ss_pred             hhhhcccccchhhhhhcCC
Q 027791          177 YGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       177 ~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ++++       ++|+.+|.
T Consensus       412 pe~a-------lkRIkkRg  423 (580)
T PHA03132        412 SEEN-------LRRVKKRG  423 (580)
T ss_pred             HHHH-------HHHHHhcC
Confidence            9999       99999885

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.64  E-value=4.7e-07  Score=72.26  Aligned_cols=106  Identities=19%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc---CCCe--eccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH--HHHHHhc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL---EVPH--ISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SKRLEEG  138 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l---g~~~--Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll--~~~l~~~  138 (219)
                      ++|.|+|||||||+++.|++.+   +..+  ++. |-+++.+.........          -..+.+..+.  .+.+.  
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~----------~~~~~~~~~~~~a~~l~--   68 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE----------DREENIRRIAEVAKLLA--   68 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc----------hHHHHHHHHHHHHHHHH--
Confidence            6799999999999999999998   6443  333 4455433211100000          0011111111  11122  


Q ss_pred             cccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          139 YYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                        ..+..+|+|..-....+...+....  .+..+|+|++|.+++       ++|-.+
T Consensus        69 --~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~-------~~R~~~  116 (149)
T cd02027          69 --DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVC-------EQRDPK  116 (149)
T ss_pred             --hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHH-------HHhCch
Confidence              1345688886544444444444433  456799999999999       888765

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.61  E-value=4.5e-07  Score=73.60  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHH--HHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA--LLSKR  134 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~--Ll~~~  134 (219)
                      ++..|+|+|+|||||||+++.|+..+     ++.+++.|++ ++.+..+......-          .++.+..  .+...
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~----------r~~~~~~~~~~a~~   71 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKED----------RDTNIRRIGFVANL   71 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhh----------HHHHHHHHHHHHHH
Confidence            45688999999999999999999987     2566776543 44332111100000          0011111  11111


Q ss_pred             HHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh
Q 027791          135 LEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      +..    .+..+|+|+........+.+........+|+|++|.+++       .+|.
T Consensus        72 ~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~-------~~R~  117 (175)
T PRK00889         72 LTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVC-------EQRD  117 (175)
T ss_pred             HHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHH-------HHhC
Confidence            211    234567776422233344444444445799999999999       8884

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.61  E-value=2.2e-07  Score=79.33  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=36.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      ++.|.|.|++||||||+++.|+++||+++++.|+++|..
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~   42 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV   42 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence            478999999999999999999999999999999988863

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.60  E-value=1.2e-07  Score=80.04  Aligned_cols=31  Identities=23%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ..+.|+|.|+.|+||||+++.||++++.+++
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            3578999999999999999999999998776

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=98.60  E-value=1.1e-06  Score=77.13  Aligned_cols=134  Identities=15%  Similarity=0.093  Sum_probs=77.6

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec---cchhHHhhcCC-CchhH---------HHHHHH-HHcCCcc
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS---MGSLVRQELSP-RSALY---------KQIANA-VNEGKLV  122 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is---~~dllr~~~~~-~s~lg---------~~i~~~-l~~g~~i  122 (219)
                      .........|++.|+.|||||++|+.||+++|+.|+.   +|+++-...-. ..++.         -.++.. .+....+
T Consensus        65 krf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dl  144 (393)
T KOG3877|consen   65 KRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDL  144 (393)
T ss_pred             hhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccH
Confidence            3344566789999999999999999999999997775   44432221110 00000         011111 1111112


Q ss_pred             cHHHHHHHHHHH-------HHhccccCCCeEEEeCccCCHH-HHHHH----------------------HhhCCCcEEEE
Q 027791          123 PEDVIFALLSKR-------LEEGYYRGESGFILDGIPRTRI-QAVSL----------------------EFCYTMALAFL  172 (219)
Q Consensus       123 p~e~i~~Ll~~~-------l~~~~~~~~~g~IlDG~Pr~~~-qa~~l----------------------~~~~~pd~VI~  172 (219)
                      +..+...+-.-|       ++.. ...+.|+|++-.|.+.- .++.+                      .+.++|.+||+
T Consensus       145 sa~~Q~r~y~~R~~QY~dAL~Hi-L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViY  223 (393)
T KOG3877|consen  145 SAAMQDRIYNCRFDQYLDALAHI-LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIY  223 (393)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHH-HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEE
Confidence            222222222212       2221 23567999998886531 12221                      11248999999


Q ss_pred             EEeChhhhcccccchhhhhhcCCCCC
Q 027791          173 FLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       173 L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                      |+.|.+.+       .+++++|....
T Consensus       224 ld~Pv~~v-------~~~Ik~rg~~~  242 (393)
T KOG3877|consen  224 LDTPVNKV-------LENIKRRGNTD  242 (393)
T ss_pred             EcCCcHHH-------HHHHHhcCCCc
Confidence            99999999       99999987554

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.59  E-value=2e-07  Score=77.26  Aligned_cols=117  Identities=21%  Similarity=0.216  Sum_probs=81.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH-HH-----
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS-KR-----  134 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~-~~-----  134 (219)
                      .++.+|++.|...|||||++..|.+.+ .+-.....+++ --...++.|+.|-.++.+...+|+++++-+.+ +|     
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~~~l~~-FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESL-IPGLDPAELLR-FPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHH-HhccChHHhhh-cchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            477899999999999999999999988 33322223332 22456789999999999988999988776653 22     


Q ss_pred             -HHhccccCCCeEEEeCccCCH---HHHHHHHh---------hCCCcEEEEEEeChhhh
Q 027791          135 -LEEGYYRGESGFILDGIPRTR---IQAVSLEF---------CYTMALAFLFLFLYGCC  180 (219)
Q Consensus       135 -l~~~~~~~~~g~IlDG~Pr~~---~qa~~l~~---------~~~pd~VI~L~~~~e~l  180 (219)
                       |.+. ...+..+|+|-|..+-   .-|+.++.         +..||+|++|+++++.+
T Consensus        81 ~i~e~-l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~  138 (208)
T KOG3327|consen   81 LIKEK-LAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDA  138 (208)
T ss_pred             HHHHH-HhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHH
Confidence             2221 1245678999775431   22333321         24899999999999998

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.54  E-value=1.2e-06  Score=71.24  Aligned_cols=117  Identities=13%  Similarity=0.060  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCe---eccchhHHhhcCCCch---h-HHHHHHHHHcCCcc--cHH-----HHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPH---ISMGSLVRQELSPRSA---L-YKQIANAVNEGKLV--PED-----VIFA  129 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~---Is~~dllr~~~~~~s~---l-g~~i~~~l~~g~~i--p~e-----~i~~  129 (219)
                      ..++|+|+|||||||+++.|+..++...   +.....-+.....+..   . .+++.....++...  ...     -...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            4688999999999999999999875421   1100111111111110   0 11222222232210  000     0001


Q ss_pred             HHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          130 LLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       130 Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+...+.     .+..+|+||...   ....+........+|+|+++.+++       .+|+.+|.
T Consensus        82 ~i~~~~~-----~g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~-------~~Rl~~R~  132 (179)
T TIGR02322        82 EIDQWLE-----AGDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVL-------AQRLAARG  132 (179)
T ss_pred             HHHHHHh-----cCCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHH-------HHHHHHcC
Confidence            1222222     235688998732   223333323345899999999999       99999884

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0645 Predicted kinase [General function prediction only]

Probab=98.53  E-value=1.2e-06  Score=71.54  Aligned_cols=118  Identities=14%  Similarity=0.012  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc---HHHHHHHHHHHHHhccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFALLSKRLEEGYY  140 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip---~e~i~~Ll~~~l~~~~~  140 (219)
                      ..+++.|.||+||||+++.|++.+|..+|..|+ +|+.+.+- |.-+.    ...|..-+   +.+...+......-.  
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~-irk~L~g~-p~~~r----~~~g~ys~~~~~~vy~~l~~~A~l~l--   73 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV-IRKRLFGV-PEETR----GPAGLYSPAATAAVYDELLGRAELLL--   73 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHH-HHHHhcCC-ccccc----CCCCCCcHHHHHHHHHHHHHHHHHHH--
Confidence            467899999999999999999999999999865 66666541 10000    00111111   111222222111111  


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      ..+..+|+|+..-...+.+.....    .-+...|+++++++++       .+|+..|.-
T Consensus        74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~-------~~rl~aR~~  126 (170)
T COG0645          74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVL-------RGRLAARKG  126 (170)
T ss_pred             hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHH-------HHHHHHhCC
Confidence            235679999865555544433322    2345679999999999       999999975

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.51  E-value=2.2e-07  Score=76.02  Aligned_cols=109  Identities=17%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH---HHHHhc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS---KRLEEG  138 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~---~~l~~~  138 (219)
                      ++.++++|.||+||||+.+...+++ ++.+++.|+++-+......  .-+.++.+.   .+|.+....+..   +++.+.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g--lve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~   78 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG--LVEHRDEMR---KLPLENQRELQAEAAKRIAEM   78 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC--CcccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999 8888999998876543210  011223332   345555544433   333322


Q ss_pred             cccCCCeEEEeCccCCHH-------HHHHHHhhCCCcEEEEEEeChhhh
Q 027791          139 YYRGESGFILDGIPRTRI-------QAVSLEFCYTMALAFLFLFLYGCC  180 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~-------qa~~l~~~~~pd~VI~L~~~~e~l  180 (219)
                          ...+|+|++-.-..       --.+.-..+.||.+|.+.++++.+
T Consensus        79 ----~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~I  123 (189)
T COG2019          79 ----ALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEI  123 (189)
T ss_pred             ----hhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHH
Confidence                12288886521110       012222345799999999999988

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.51  E-value=8.7e-07  Score=84.05  Aligned_cols=41  Identities=20%  Similarity=0.269  Sum_probs=38.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      .+++.|.|.||+||||||+++.|+++||+.+++.|+++|..
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            47789999999999999999999999999999999999974

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.49  E-value=2.4e-06  Score=69.96  Aligned_cols=108  Identities=20%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH--HH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SK  133 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll--~~  133 (219)
                      .++..|+|.|+|||||||+++.|+..+   |  +.+++.+ -+++.+..+......-          ..+.+..+.  ..
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~----------~~~~~~~~~~~~~   84 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEED----------RKENIRRIGEVAK   84 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHH----------HHHHHHHHHHHHH
Confidence            466889999999999999999999987   3  3455544 3444332211110000          001111111  11


Q ss_pred             HHHhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhh
Q 027791          134 RLEEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNE  190 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~R  190 (219)
                      .+.    ..+..+|+|..-....+.+.+....  .+..+|++++|.+++       .+|
T Consensus        85 ~~~----~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~-------~~R  132 (184)
T TIGR00455        85 LFV----RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVC-------EQR  132 (184)
T ss_pred             HHH----cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHH-------HHh
Confidence            121    2356788887533344555554432  245789999999999       888

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.48  E-value=5.4e-07  Score=62.84  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |.+.|+|||||||+++.|++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG4639 Predicted kinase [General function prediction only]

Probab=98.48  E-value=1.4e-06  Score=70.44  Aligned_cols=114  Identities=20%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ..+++.|+|||||||+++..  ....++++.+++=+.....   .++    ...++   .++.+.+++.+.+++.. ..+
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~---~~~----e~sqk---~~~~~~~~l~~~l~qrl-~~G   69 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVS---ASK----ENSQK---NDELVWDILYKQLEQRL-RRG   69 (168)
T ss_pred             eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhc---hhh----hhccc---cHHHHHHHHHHHHHHHH-HcC
Confidence            46889999999999999763  4578899988754332110   011    11111   23344444444444332 234


Q ss_pred             CeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhh--hcCCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQ--VDGSLC  197 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl--~~R~~~  197 (219)
                      +-.|+|..-...++...+..    ......+|+|+.|.+.|       .+|-  ..|.++
T Consensus        70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c-------~aRNk~~~Rqv~  122 (168)
T COG4639          70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELC-------LARNKLRERQVP  122 (168)
T ss_pred             CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH-------HHHhhccchhCC
Confidence            67899987655555444432    23456789999999999       8884  444433

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.47  E-value=2e-06  Score=69.69  Aligned_cols=109  Identities=17%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH--HHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--LSKR  134 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L--l~~~  134 (219)
                      +|..|.|+|.|||||||+|+.|.++|   |.  .+++. |.+|..+...-....+-+.          +.+..+  +.+.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~----------e~~rr~~~~A~l   69 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDRE----------ENIRRIAEVAKL   69 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHH----------HHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHH----------HHHHHHHHHHHH
Confidence            46778899999999999999999988   44  34444 4566655443221111110          111111  1222


Q ss_pred             HHhccccCCCeEEEeCccCCHHHHHHHHhhCC--CcEEEEEEeChhhhcccccchhhhhh
Q 027791          135 LEEGYYRGESGFILDGIPRTRIQAVSLEFCYT--MALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~--pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                      +.+    .+.-+|++-.--..+..+...+...  ..+-||++||.+++       .+|=.
T Consensus        70 l~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~-------~~RD~  118 (156)
T PF01583_consen   70 LAD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVC-------RKRDP  118 (156)
T ss_dssp             HHH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHH-------HHHTT
T ss_pred             HHh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHH-------HHhCc
Confidence            222    3456777754222333333333222  46899999999999       88843

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.46  E-value=6.4e-07  Score=76.11  Aligned_cols=125  Identities=19%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCC---eeccchhHHhhcCCC----------ch-------hHHHHHHHHHcCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPR----------SA-------LYKQIANAVNEGK  120 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~---~Is~~dllr~~~~~~----------s~-------lg~~i~~~l~~g~  120 (219)
                      .+...|.+.|++||||||+|+.|++.++..   .|+.|+.....-...          .|       +.+.+. .+.+|+
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~-~L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK-DLKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH-HHHcCC
Confidence            456889999999999999999999999866   677777665322110          01       111221 233343


Q ss_pred             cccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          121 LVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       121 ~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .+...+..-.-..+..+. .....+-+|++|+---.+  +.+..  ..|+-|++++|.|++       +.|...|.+-
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~R-------liRri~RD~~  151 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVR-------LIRRIKRDVQ  151 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHH-------HHHHHHHHHH
Confidence            322111000000111010 012345688899632211  22222  268999999999999       6666656543

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.45  E-value=2.8e-06  Score=72.03  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=37.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      .+.|.|=||.||||||+|+.||++||+.|+++|-++|...
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a   43 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA   43 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence            3789999999999999999999999999999999998754

>PTZ00301 uridine kinase; Provisional

Probab=98.44  E-value=3e-07  Score=77.85  Aligned_cols=125  Identities=16%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc----C---CCeeccchhHHhhcCC----------Cch-------hHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL----E---VPHISMGSLVRQELSP----------RSA-------LYKQIANAVNE  118 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l----g---~~~Is~~dllr~~~~~----------~s~-------lg~~i~~~l~~  118 (219)
                      -..|.|.|+|||||||+|+.|++++    +   +.++++|+..+....-          +.|       +-+.+ ..+.+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~~   81 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELKS   81 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHHc
Confidence            3678899999999999999998876    2   3366777765543110          000       00111 11222


Q ss_pred             CCcccHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          119 GKLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       119 g~~ip~e~i~~Ll~~~l~~~-~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      |+.+.-....-....+.... ......-+|++|+-. .. ...+..  ..|+.|+++++.|++       +.|...|.+.
T Consensus        82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l~-~~~l~~--l~D~~ifvd~~~d~~-------~~Rr~~Rd~~  150 (210)
T PTZ00301         82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-FT-NAELRN--EMDCLIFVDTPLDIC-------LIRRAKRDMR  150 (210)
T ss_pred             CCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-hC-CHHHHH--hCCEEEEEeCChhHH-------HHHHHhhhHH
Confidence            22111000000000000000 001233467799633 11 112222  368899999999999       9999989876


Q ss_pred             CC
Q 027791          198 LT  199 (219)
Q Consensus       198 ~~  199 (219)
                      ..
T Consensus       151 ~r  152 (210)
T PTZ00301        151 ER  152 (210)
T ss_pred             hc
Confidence            54

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.43  E-value=2e-06  Score=76.50  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=34.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      ..|+.|++.|++||||||+|..||++||.+++-..|.+|+.+
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~  131 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM  131 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence            367899999999999999999999999998543356677444

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.42  E-value=6.9e-07  Score=73.94  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHH
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVR   99 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr   99 (219)
                      |.|.|++||||||+++.|+..+   ++.++++|++..
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            7899999999999999999987   467888887664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.42  E-value=1.5e-06  Score=78.56  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC------CCeeccchhHH
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVR   99 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg------~~~Is~~dllr   99 (219)
                      ++|+|+|||||||+++.|++.+.      +.+++.||++.
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~   41 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP   41 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence            67999999999999999998775      34999999884

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.39  E-value=2.6e-06  Score=81.88  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC------CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH--HH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV------PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--LS  132 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~------~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L--l~  132 (219)
                      .++..|+|+|+|||||||+++.|+++++.      .+++.| .+++.+.++....+.-+          +.....+  +.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er----------~~~~~~l~~~a  458 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDR----------DLNILRIGFVA  458 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHH----------HHHHHHHHHHH
Confidence            45568899999999999999999999985      777664 55665543211111100          0111111  11


Q ss_pred             HHHHhccccCCCeEEEeC-ccCCHHHHH---HHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791          133 KRLEEGYYRGESGFILDG-IPRTRIQAV---SLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       133 ~~l~~~~~~~~~g~IlDG-~Pr~~~qa~---~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                      ..+.    ..+.++|+|. +|......+   .+... ....+|+|++|.+++       .+|..
T Consensus       459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~-g~fivV~L~~p~e~l-------~~R~r  510 (568)
T PRK05537        459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAY-GGFIEVHVATPLEVC-------EQRDR  510 (568)
T ss_pred             HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhc-CCEEEEEEcCCHHHH-------HHhcc
Confidence            1121    2356788885 554432222   22221 223689999999999       88874

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.39  E-value=3.3e-07  Score=90.12  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      +.|.|.|||||||||+++.||+++|+.++++|.++|...
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~   40 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA   40 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence            478999999999999999999999999999999998743

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.36  E-value=8.9e-07  Score=71.85  Aligned_cols=118  Identities=11%  Similarity=0.036  Sum_probs=64.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC---ch----hHHHHHHHHHcCCcccH-----H---HHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPE-----D---VIF  128 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~---s~----lg~~i~~~l~~g~~ip~-----e---~i~  128 (219)
                      ..|+|+||+||||||+++.|++.+...++......|+.....   ..    ....+...+..+..+..     +   +..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            568999999999999999999987666655544444332211   00    01223333334432221     0   111


Q ss_pred             HHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       129 ~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      ..+.+.+.+     +..+|+|.-+   .....+.. ...+..++++..+++++       .+|+.+|..
T Consensus        82 ~~i~~~~~~-----g~~vi~d~~~---~~~~~~~~~~~~~~~i~~~~~~~e~~-------~~Rl~~r~~  135 (180)
T TIGR03263        82 SPVEEALAA-----GKDVLLEIDV---QGARQVKKKFPDAVSIFILPPSLEEL-------ERRLRKRGT  135 (180)
T ss_pred             HHHHHHHHC-----CCeEEEECCH---HHHHHHHHhCCCcEEEEEECCCHHHH-------HHHHHHcCC
Confidence            222333332     3568888643   33333333 22333455556667888       899988853

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK07429 phosphoribulokinase; Provisional

Probab=98.35  E-value=1e-06  Score=79.35  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dll   98 (219)
                      .++..|.|.|++||||||+++.|++.++   +.++..|++.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            5788999999999999999999999987   5678888764

>PLN02348 phosphoribulokinase

Probab=98.34  E-value=4.2e-07  Score=83.36  Aligned_cols=29  Identities=21%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ..++..|.|.|++||||||+++.|++.++
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35678899999999999999999999986

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.32  E-value=8.1e-06  Score=67.86  Aligned_cols=108  Identities=15%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH--
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS--  132 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~--  132 (219)
                      +.++..|.|+|++||||||+++.|+..+   |  ..+++.++ ++..+......       ..   .-..+.+..+..  
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~-~~~~~~~~~~~-------~~---~~~~~~~~~l~~~a   89 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN-VRHGLCSDLGF-------SD---ADRKENIRRVGEVA   89 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe-HHhhhhhcCCc-------Cc---ccHHHHHHHHHHHH
Confidence            4577899999999999999999999976   3  45555444 33322111000       00   000122222211  


Q ss_pred             HHHHhccccCCCeEEEeCccCC-HHHHHHHHhhC-CCc-EEEEEEeChhhhcccccchhhh
Q 027791          133 KRLEEGYYRGESGFILDGIPRT-RIQAVSLEFCY-TMA-LAFLFLFLYGCCVIIGSVILNE  190 (219)
Q Consensus       133 ~~l~~~~~~~~~g~IlDG~Pr~-~~qa~~l~~~~-~pd-~VI~L~~~~e~l~~~~~~~~~R  190 (219)
                      ..+..     ....|+..|... ..+.+.+.... ... .+|+|++|++++       .+|
T Consensus        90 ~~~~~-----~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~-------~~R  138 (198)
T PRK03846         90 KLMVD-----AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAIC-------EAR  138 (198)
T ss_pred             HHHhh-----CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHH-------Hhc
Confidence            11111     123455556542 34455554433 223 489999999999       888

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.32  E-value=1.4e-06  Score=71.87  Aligned_cols=114  Identities=17%  Similarity=0.125  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHHcCCcc------c--HH---HHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLV------P--ED---VIFAL  130 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i------p--~e---~i~~L  130 (219)
                      ..|+|.|++-|||||+++.|.+.+.-|  |+++|+++.. +.++..         ..+.-+      +  ..   .+...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~   71 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRY---------RPGDGLEPAGDRPDGGPLFRRLYAA   71 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGG---------TSTTSEEEETTSEEE-HHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCcccc---------cCCccccccccCCchhHHHHHHHHH
Confidence            578999999999999999999999665  6777776664 322110         000000      0  11   12222


Q ss_pred             HHHHHHhccccCCCeEEEeCccCCHHH-HHHHHh-h-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          131 LSKRLEEGYYRGESGFILDGIPRTRIQ-AVSLEF-C-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       131 l~~~l~~~~~~~~~g~IlDG~Pr~~~q-a~~l~~-~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ....+... ...+..+|+|........ .+.+.. + ..+.+.|-+.||.+++       .+|-..|.
T Consensus        72 ~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil-------~~RE~~Rg  131 (174)
T PF07931_consen   72 MHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEIL-------ERRERARG  131 (174)
T ss_dssp             HHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHH-------HHHHHHHT
T ss_pred             HHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHH-------HHHHHhcC
Confidence            22333222 135678999976555443 343422 2 3466899999999999       88887664

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.28  E-value=8.7e-06  Score=69.01  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +.|+|+|+|||||||+|+.|++.+
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L   25 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKEL   25 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHH
Confidence            578999999999999999999987

>PRK05439 pantothenate kinase; Provisional

Probab=98.28  E-value=3e-06  Score=75.76  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR   99 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dllr   99 (219)
                      ..+..|.|.|+|||||||+|+.|++.++       +.+|++|+.+.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            5678999999999999999999998663       46788888764

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.27  E-value=9.1e-07  Score=75.22  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=27.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV   98 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll   98 (219)
                      |.|.|++||||||+++.|+..+.       +.+|++|+..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            67899999999999999999873       4567777764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.27  E-value=5.1e-06  Score=81.19  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=37.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      +.++|.+.||+||||||+++.||++||++|+++++++|..
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            4678999999999999999999999999999999999886

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.27  E-value=2.7e-06  Score=72.36  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|.|++||||||+++.|+..+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999999877

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.26  E-value=1e-05  Score=67.07  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ++..|+|+||+||||||+++.|+..++..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~   34 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQL   34 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCcccee
Confidence            5678999999999999999999998863333

>PHA00729 NTP-binding motif containing protein

Probab=98.26  E-value=7.6e-06  Score=70.07  Aligned_cols=112  Identities=10%  Similarity=-0.027  Sum_probs=61.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      ...|+|+|+||+||||+|..|+++++.  ..++.++......  .            ....++.+-+...++...+..  
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~--~------------~~~fid~~~Ll~~L~~a~~~~--   80 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYV--Q------------NSYFFELPDALEKIQDAIDND--   80 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcC--C------------cEEEEEHHHHHHHHHHHHhcC--
Confidence            357999999999999999999998752  2222221111110  0            001122222333333333221  


Q ss_pred             cCCCeEEEeCcc---CC-------HHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          141 RGESGFILDGIP---RT-------RIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       141 ~~~~g~IlDG~P---r~-------~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      ....-+|+|++-   ..       ....-.+.+.+  ..+++++..++++.+       .+++..|...
T Consensus        81 ~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL-------~~~Lr~Rg~~  142 (226)
T PHA00729         81 YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDL-------AFYLREKGWY  142 (226)
T ss_pred             CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHH-------HHHHHhCCCc
Confidence            112346999821   11       00001122211  478899999999999       9999988754

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.25  E-value=2e-06  Score=70.80  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~  100 (219)
                      .|.|.|+|||||||+|+.|++.+     ++.+|++|++.+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            37899999999999999999986     5678999998864

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.23  E-value=3.6e-06  Score=70.66  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=24.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .|.++..|+|+||+||||||+++.|.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3568889999999999999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.22  E-value=1.1e-05  Score=78.46  Aligned_cols=111  Identities=11%  Similarity=0.002  Sum_probs=65.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRL  135 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l  135 (219)
                      .++..|+++|.|||||||+|+.|++++     ++.+++.|+ +|..+..+......-+          .+.+..+..  +
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~--~  524 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAE--V  524 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHH--H
Confidence            467899999999999999999999997     345666644 6655432211111100          112222211  1


Q ss_pred             HhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhh
Q 027791          136 EEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       136 ~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      .......+..+|+|.......+.+.+.+..  .+..+|+|+++.+++       .+|.
T Consensus       525 a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~-------~~R~  575 (632)
T PRK05506        525 ARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVC-------EARD  575 (632)
T ss_pred             HHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHH-------HhhC
Confidence            110012345678886432334444444432  234799999999999       8884

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.22  E-value=1.7e-05  Score=74.28  Aligned_cols=42  Identities=31%  Similarity=0.352  Sum_probs=35.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      .+|..|+|.|+||+||||++..||+++|+.++-..|.+|+.+
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l  294 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL  294 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence            368899999999999999999999999998654446676644

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.16  E-value=8.7e-06  Score=67.53  Aligned_cols=120  Identities=8%  Similarity=-0.001  Sum_probs=65.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCc-------hhHHHHHHHHHcCCcccH-----H---
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS-------ALYKQIANAVNEGKLVPE-----D---  125 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s-------~lg~~i~~~l~~g~~ip~-----e---  125 (219)
                      .++..|+|.||+||||||+++.|.+++.-.+++..-.-|...+...       ..-++....+++|..+.-     +   
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            3678899999999999999999998873223333323333222111       011333444444443221     0   


Q ss_pred             HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCc--EEEEEEeC-hhhhcccccchhhhhhcCCC
Q 027791          126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMA--LAFLFLFL-YGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd--~VI~L~~~-~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      +-..-+...+.+     +...|+|-.+....   .+... .|+  .+|++..| .+++       .+|+.+|..
T Consensus        82 t~~~~i~~~~~~-----g~~~i~d~~~~g~~---~l~~~-~~~~~~~Ifi~pps~e~l-------~~RL~~R~~  139 (186)
T PRK14737         82 TPKAFIEDAFKE-----GRSAIMDIDVQGAK---IIKEK-FPERIVTIFIEPPSEEEW-------EERLIHRGT  139 (186)
T ss_pred             CcHHHHHHHHHc-----CCeEEEEcCHHHHH---HHHHh-CCCCeEEEEEECCCHHHH-------HHHHHhcCC
Confidence            111112223332     45678886543333   33332 244  57888885 5888       899988864

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.14  E-value=2.2e-05  Score=69.60  Aligned_cols=96  Identities=13%  Similarity=-0.004  Sum_probs=55.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .+..|+|+|++||||||+++.|. ..|+..++-                           +|.+++..++.- ..+....
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~-~~~~~~~   55 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVEL-LAQSGGI   55 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHH-HHhcCCC
Confidence            34578999999999999999995 568766522                           111222232221 1211001


Q ss_pred             CCCeEEEeCccCCH-----HHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          142 GESGFILDGIPRTR-----IQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~-----~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ..--+++|-.....     +..+.+........+|+|+++++++       .+|+.+
T Consensus        56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L-------~~Rl~~  105 (288)
T PRK05416         56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVL-------IRRYSE  105 (288)
T ss_pred             CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHH-------HHHHhh
Confidence            22356777532211     1122233322334789999999999       999974

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.12  E-value=1.4e-05  Score=70.18  Aligned_cols=110  Identities=21%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      +.|+|+|.|||||||+|+.|.+.+     .+.+++.+++.   +.... . ..         .-.++.+...+...++..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y-~~---------~~~Ek~~R~~l~s~v~r~   67 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-Y-AD---------SKKEKEARGSLKSAVERA   67 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S------------GGGHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-h-hc---------hhhhHHHHHHHHHHHHHh
Confidence            578999999999999999999974     44556644433   11111 0 00         001122222233333322


Q ss_pred             cccCCCeEEEeCccCCHHHH-HHHH---hhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          139 YYRGESGFILDGIPRTRIQA-VSLE---FCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa-~~l~---~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      . ..+.-+|+|+--.-.... +.+.   .......+||++++.|.+       .+|=.+|.
T Consensus        68 l-s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~-------~~~N~~R~  120 (270)
T PF08433_consen   68 L-SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC-------LQRNSKRP  120 (270)
T ss_dssp             H-TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH-------HHHHHHTT
T ss_pred             h-ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH-------HHhhhccC
Confidence            1 224678999743332222 2221   223466899999999999       88877775

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.10  E-value=1.3e-05  Score=66.26  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .|.|.|++||||||+|+.|++.++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.10  E-value=3.1e-06  Score=69.31  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcC--CCeeccchhHHhh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQE  101 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~~dllr~~  101 (219)
                      ++++|+|+|||||||+|..++++++  +.++.++...+++
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e   41 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDE   41 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHH
Confidence            5799999999999999999999987  4466665544443

>PLN02165 adenylate isopentenyltransferase

Probab=98.10  E-value=2.6e-05  Score=70.37  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl   97 (219)
                      .++..|+|+||+||||||++..||+.++..+|+.|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            4566899999999999999999999999999999876

>PRK15453 phosphoribulokinase; Provisional

Probab=98.08  E-value=1.8e-05  Score=69.93  Aligned_cols=39  Identities=13%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR   99 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr   99 (219)
                      .+++.|.|.|.|||||||+++.|++.++     ..+|+.|+..+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4678899999999999999999998773     45677766543

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.07  E-value=4.3e-06  Score=73.45  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=28.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc---CCCeeccchhH
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLV   98 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dll   98 (219)
                      |.|.|++||||||+++.|+..+   +..+|+.|++.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            6799999999999999999877   56688888764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.05  E-value=2.9e-06  Score=75.20  Aligned_cols=38  Identities=24%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll   98 (219)
                      ..+..|.|.|++||||||+++.|...+.       +.++++|+..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            4678899999999999999998877653       4567777654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.02  E-value=4.7e-06  Score=63.32  Aligned_cols=29  Identities=34%  Similarity=0.571  Sum_probs=26.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      |+|+||||+||||+++.+++.++.+++.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i   29 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEI   29 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence            68999999999999999999999877654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.96  E-value=9e-05  Score=65.39  Aligned_cols=104  Identities=10%  Similarity=-0.036  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ..|+|+|.+||||||..+.| |.+|+..|+-                           +|..++..+++.-.+.......
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~   53 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK   53 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence            36789999999999999998 7788876621                           3555566655432211111123


Q ss_pred             CeEEEeCccCC----HH-HHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh-hcCCCCCCCCC
Q 027791          144 SGFILDGIPRT----RI-QAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ-VDGSLCLTCPC  202 (219)
Q Consensus       144 ~g~IlDG~Pr~----~~-qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl-~~R~~~~~~g~  202 (219)
                      --+++|--...    .. ....+......-.+|+|+++++++       ++|. ..|+.+|-.+.
T Consensus        54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~L-------irRy~eTRR~HPL~~~  111 (284)
T PF03668_consen   54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVL-------IRRYSETRRRHPLSSD  111 (284)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHH-------HHHHHhccCCCCCCCC
Confidence            34777732111    11 112222222334699999999999       9999 46778886543

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.96  E-value=4.7e-05  Score=65.99  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .....++|+||||+||||+|+.+++.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.95  E-value=0.00014  Score=60.14  Aligned_cols=44  Identities=25%  Similarity=0.281  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCC-eeccchhHHhhcCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP-HISMGSLVRQELSP  104 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~-~Is~~dllr~~~~~  104 (219)
                      .++..|-|+|.+||||||+|..|.++|   |.. ++--||-+|.-+..
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~   68 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR   68 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC
Confidence            566777799999999999999999987   442 22335677776654

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=97.83  E-value=1.8e-05  Score=79.32  Aligned_cols=39  Identities=26%  Similarity=0.221  Sum_probs=36.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      +.|.|.|||||||||+++.||++|++.++++|.++|...
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            489999999999999999999999999999999999863

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.80  E-value=8.2e-05  Score=64.72  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=37.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS  103 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~  103 (219)
                      .+|..|++-|+||.||||+|..||.++|+.++-..|.+|+-+.
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR  129 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR  129 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence            5678898999999999999999999999988766677777664

>CHL00181 cbbX CbbX; Provisional

Probab=97.77  E-value=7.5e-05  Score=66.03  Aligned_cols=27  Identities=26%  Similarity=0.505  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..++|.||||+||||+|+.+++.+
T Consensus        57 ~~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         57 NPGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            356779999999999999999999875

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.73  E-value=0.00057  Score=56.91  Aligned_cols=41  Identities=24%  Similarity=0.265  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS  103 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~  103 (219)
                      ++..++|.||+|+||||+.+.|-+.. --.+|+.---|...+
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~   43 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRP   43 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCC
Confidence            67889999999999999999999988 445566555565544

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00015  Score=69.76  Aligned_cols=119  Identities=20%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc--hhHHhhcCCCchhHHHHHHHHHcCCcc-----------
Q 027791           56 AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQELSPRSALYKQIANAVNEGKLV-----------  122 (219)
Q Consensus        56 ~~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~--dllr~~~~~~s~lg~~i~~~l~~g~~i-----------  122 (219)
                      .|..|.++  ++|.||||+|||.+|+.||-++++|++++.  +++-.. .+  +.-+.|++.+++-...           
T Consensus       218 lGv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SG--ESEkkiRelF~~A~~~aPcivFiDeID  292 (802)
T KOG0733|consen  218 LGVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SG--ESEKKIRELFDQAKSNAPCIVFIDEID  292 (802)
T ss_pred             cCCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-Cc--ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence            34444444  778999999999999999999999999763  222111 11  1224555544332111           


Q ss_pred             ---------cHH----HHHHHHHHHHHhcccc--CCCeEEEeCccCCHHHH-HHHHhhCCCcEEEEEEeChhhh
Q 027791          123 ---------PED----VIFALLSKRLEEGYYR--GESGFILDGIPRTRIQA-VSLEFCYTMALAFLFLFLYGCC  180 (219)
Q Consensus       123 ---------p~e----~i~~Ll~~~l~~~~~~--~~~g~IlDG~Pr~~~qa-~~l~~~~~pd~VI~L~~~~e~l  180 (219)
                               ..|    ++..|+. -|......  .+.++++=|.-...+-. -.|...+.+|.=|.|.+|+++.
T Consensus       293 AI~pkRe~aqreMErRiVaQLlt-~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a  365 (802)
T KOG0733|consen  293 AITPKREEAQREMERRIVAQLLT-SMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA  365 (802)
T ss_pred             ccccchhhHHHHHHHHHHHHHHH-hhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence                     112    2333322 12221111  13455555542222211 2244456899999999999998

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=0.00028  Score=65.62  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=52.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc----CC-CeeccchhHHhhcCCCchhHHHHHHHHHcCCc--ccHHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL----EV-PHISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSKR  134 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l----g~-~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~--ip~e~i~~Ll~~~  134 (219)
                      ++..++|+||+||||||++..||..+    |. .++...|..|...      ..+++.+.+....  .+...... +.+.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA------~eQLk~yAe~lgvp~~~~~~~~~-l~~~  294 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA------IEQLKRYADTMGMPFYPVKDIKK-FKET  294 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH------HHHHHHHHHhcCCCeeehHHHHH-HHHH
Confidence            45678899999999999999999765    22 2233334454421      1233333333221  11122222 2334


Q ss_pred             HHhccccCCCeEEEe--Ccc-CCHHHHHHHHh
Q 027791          135 LEEGYYRGESGFILD--GIP-RTRIQAVSLEF  163 (219)
Q Consensus       135 l~~~~~~~~~g~IlD--G~P-r~~~qa~~l~~  163 (219)
                      +..   .....+|+|  |++ ++..+.+.+..
T Consensus       295 l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~  323 (432)
T PRK12724        295 LAR---DGSELILIDTAGYSHRNLEQLERMQS  323 (432)
T ss_pred             HHh---CCCCEEEEeCCCCCccCHHHHHHHHH
Confidence            432   234669999  764 66777777754

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.70  E-value=0.00058  Score=58.42  Aligned_cols=112  Identities=17%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhhcCCC---------chhHHHHHHHHHcCCcccH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPR---------SALYKQIANAVNEGKLVPE  124 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~~~~~---------s~lg~~i~~~l~~g~~ip~  124 (219)
                      ....++.|++.|.|+.|||++|+.|+..|     ...+++.|+.=|+.....         .+-+.++++.+      -.
T Consensus         8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~------a~   81 (222)
T PF01591_consen    8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQI------AK   81 (222)
T ss_dssp             -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHH------HH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHH------HH
Confidence            34677899999999999999999999866     447888998777665431         12233333322      12


Q ss_pred             HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEE--eChhhh
Q 027791          125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFL--FLYGCC  180 (219)
Q Consensus       125 e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~--~~~e~l  180 (219)
                      +.+.++ ...+++.   ++.--|+|+.-.|.+..+.+.+..  ....|++++  |+++.+
T Consensus        82 ~~l~dl-~~~l~~~---~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~i  137 (222)
T PF01591_consen   82 EALEDL-IEWLQEE---GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEI  137 (222)
T ss_dssp             HHHHHH-HHHHHTS-----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHH
T ss_pred             HHHHHH-HHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHH
Confidence            333343 3344432   344569999888877766654321  112455554  666655

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.65  E-value=0.00026  Score=53.91  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc--------CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc--cHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV--PEDVIFALLS  132 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l--------g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i--p~e~i~~Ll~  132 (219)
                      .-.++|.|+||+|||++++.+++.+        ..+++.+.  +.... ....+.+.+.+.+......  +.+.+.+.+.
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~   80 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN--CPSSR-TPRDFAQEILEALGLPLKSRQTSDELRSLLI   80 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE--HHHHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE--eCCCC-CHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence            4468899999999999999999987        45544331  11111 1223455555555433222  3344446667


Q ss_pred             HHHHhccccCCCeEEEeCccC--CHHHHHHHHhhC-CCcEEEEEEeChh
Q 027791          133 KRLEEGYYRGESGFILDGIPR--TRIQAVSLEFCY-TMALAFLFLFLYG  178 (219)
Q Consensus       133 ~~l~~~~~~~~~g~IlDG~Pr--~~~qa~~l~~~~-~pd~VI~L~~~~e  178 (219)
                      +.+.+..   ..-+|||.+=.  +....+.+.... ...+-|.|-..++
T Consensus        81 ~~l~~~~---~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~  126 (131)
T PF13401_consen   81 DALDRRR---VVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPE  126 (131)
T ss_dssp             HHHHHCT---EEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESST
T ss_pred             HHHHhcC---CeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChh
Confidence            7777642   24688897632  222333333222 4566666666663

>PLN02840 tRNA dimethylallyltransferase

Probab=97.65  E-value=6.5e-05  Score=69.75  Aligned_cols=38  Identities=29%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      ...+++.|+|.||+||||||++..|+++++.++|+.|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            33556789999999999999999999999999998865

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.63  E-value=6.3e-05  Score=67.24  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl   97 (219)
                      .+..|+|+||+||||||+|..|+++++.++||.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            346789999999999999999999999999999873

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.61  E-value=0.00015  Score=61.76  Aligned_cols=120  Identities=15%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHH-hhcCCC--chhHHHH---------HHHHHcCCcccHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR-QELSPR--SALYKQI---------ANAVNEGKLVPEDVIFALLS  132 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr-~~~~~~--s~lg~~i---------~~~l~~g~~ip~e~i~~Ll~  132 (219)
                      .++|.||+|+|||.++-.||+++|.|+|+.|.+.. .++.-+  .|...++         ...+.+|. ++.+.....+.
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li   81 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLI   81 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHH
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHH
Confidence            57789999999999999999999999999876422 222211  1111111         12344555 45555666667


Q ss_pred             HHHHhccccCCCeEEEeCccCCHHHHHHHHh-hC----CCcEEEEEEeChhhhcccccchhhhh
Q 027791          133 KRLEEGYYRGESGFILDGIPRTRIQAVSLEF-CY----TMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       133 ~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~-~~----~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      .++....  .+.++|++|-.-+  -...|.+ ..    ..-.+..+.++++..  |-.+..+|+
T Consensus        82 ~~v~~~~--~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~--f~~ra~~Rv  139 (233)
T PF01745_consen   82 SEVNSYS--AHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEV--FMARAKRRV  139 (233)
T ss_dssp             HHHHTTT--TSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHH--HHHHHHHHH
T ss_pred             HHHHhcc--ccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHH--HHHHHHHHH
Confidence            7777764  3789999986332  2222322 11    223577778877766  434444444

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.59  E-value=6.1e-05  Score=56.15  Aligned_cols=28  Identities=32%  Similarity=0.546  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +..++|+||||+||||+++.++..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4578999999999999999999988665

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.55  E-value=0.00077  Score=55.32  Aligned_cols=115  Identities=12%  Similarity=0.087  Sum_probs=59.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCc-h------hHHHHH--HH---HHcC-------CcccHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS-A------LYKQIA--NA---VNEG-------KLVPED  125 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s-~------lg~~i~--~~---l~~g-------~~ip~e  125 (219)
                      .|.|.+..|||++++++.||++||+++++- +++.+.+.... +      ..+...  ..   +..+       ....++
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            478999999999999999999999999988 77776654310 0      011111  11   1111       112233


Q ss_pred             HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .+.....+-+.+..  ...+.|+.|.-     +..+..-.+..+-|+|.+|.+..       ++|+.+|
T Consensus        80 ~~~~~~~~~i~~la--~~~~~Vi~GR~-----a~~il~~~~~~l~V~i~A~~~~R-------v~ri~~~  134 (179)
T PF13189_consen   80 KIFRAQSEIIRELA--AKGNCVIVGRC-----ANYILRDIPNVLHVFIYAPLEFR-------VERIMER  134 (179)
T ss_dssp             HHHHHHHHHHHHHH--H---EEEESTT-----HHHHTTT-TTEEEEEEEE-HHHH-------HHHHHHH
T ss_pred             HHHHHHHHHHHHHh--ccCCEEEEecC-----HhhhhCCCCCeEEEEEECCHHHH-------HHHHHHH
Confidence            44444333333321  13456776651     22221111235889999999999       9998877

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.55  E-value=4.9e-05  Score=60.90  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHh
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ  100 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~  100 (219)
                      +|+|+|+||+||||+++.|++. |++++  .+..|.
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~   33 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE   33 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence            5899999999999999999988 88877  444444

>PHA03136 thymidine kinase; Provisional

Probab=97.55  E-value=0.0012  Score=60.44  Aligned_cols=24  Identities=33%  Similarity=0.180  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +-.+|.|.|+.|+||||+.+.|.+
T Consensus        35 ~~~rvyieG~~gvGKTT~~~~l~~   58 (378)
T PHA03136         35 RLVLLYLDGPFGTGKTTTAKLLME   58 (378)
T ss_pred             eeEEEEEECCCcCCHHHHHHHHHh
Confidence            457899999999999999999987

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.54  E-value=5.4e-05  Score=61.76  Aligned_cols=43  Identities=19%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS  103 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~  103 (219)
                      ..+++|+++|+||+||||+++.+++++.-.-+.++-++-.+..
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR   45 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR   45 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence            3578999999999999999999999884443444444444443

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.52  E-value=0.00051  Score=60.58  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..++|+||||+||||+|+.+++.+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            34569999999999999998888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.51  E-value=0.00011  Score=68.20  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      -.|..|+|+||||+|||++++.||+.++.+++.++.
T Consensus        45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            345679999999999999999999999999998873

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.51  E-value=0.00062  Score=59.89  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHH
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR   99 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr   99 (219)
                      |.|.|.+||||||+++.|.+.++     +.+|+.|+..+
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            67899999999999999998773     45777777665

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.50  E-value=0.00014  Score=70.12  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSL   97 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dl   97 (219)
                      +...|.|.|++||||||+++.|+..+ +..+|++|+.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            56788999999999999999999987 5567888775

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.50  E-value=0.00011  Score=63.08  Aligned_cols=32  Identities=22%  Similarity=0.231  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ...++|.||||.||||+|+.||++++..+..+
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~   81 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKIT   81 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence            35689999999999999999999999876543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.49  E-value=9.2e-05  Score=57.51  Aligned_cols=29  Identities=38%  Similarity=0.610  Sum_probs=26.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      |+|+|+||+|||++++.+++.++.+++.+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i   30 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIRI   30 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence            78999999999999999999998877543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF05729 NACHT: NACHT domain

Probab=97.47  E-value=0.00025  Score=55.67  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++|.|+||+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            47899999999999999999876

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.45  E-value=0.00014  Score=62.20  Aligned_cols=39  Identities=13%  Similarity=0.074  Sum_probs=33.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCe-eccchhHHhhcC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS  103 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~-Is~~dllr~~~~  103 (219)
                      |.|.++|.|||||||+++.+ ++.|.++ ++++|-++..+.
T Consensus         1 miI~i~G~~gsGKstva~~~-~~~g~~~~~~~~d~ik~~l~   40 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFI-IENYNAVKYQLADPIKEILA   40 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHH-HhcCCcEEEehhHHHHHHHH
Confidence            57899999999999999998 4567777 999998887653

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.44  E-value=0.0003  Score=65.47  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      .+..|+|+||||+||||+|+.|++.++.+++.++-
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            45779999999999999999999999999988764

>PRK09169 hypothetical protein; Validated

Probab=97.44  E-value=0.00088  Score=71.95  Aligned_cols=107  Identities=13%  Similarity=0.038  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ..|+++|.+|+||||+++.|++++++++++.+..+.+.      .++.|.+++.... .+.+.-...+.+-+. .     
T Consensus      2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-~----- 2177 (2316)
T PRK09169       2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR-W----- 2177 (2316)
T ss_pred             cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc-C-----
Confidence            57999999999999999999999999999998887764      4456666655434 566665555555442 1     


Q ss_pred             CeEEEe--Cc-cCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          144 SGFILD--GI-PRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       144 ~g~IlD--G~-Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                       ..||.  |+ +...+..+.+..   -..+|+++.+.+++       .+|+.+.
T Consensus      2178 -~vVLSTGGGav~~~enr~~L~~---~GlvV~L~an~~tl-------~~Rty~g 2220 (2316)
T PRK09169       2178 -EVVLPAEGFGAAVEQARQALGA---KGLRVMRINNGFAA-------PDTTYAG 2220 (2316)
T ss_pred             -CeEEeCCCCcccCHHHHHHHHH---CCEEEEEECCHHHH-------HHHhccC
Confidence             23442  33 233333344444   35799999999999       8998644

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.44  E-value=0.00034  Score=60.80  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .++|.|+||+|||++|+.|++.+|.+++.+
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i   52 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLI   52 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            478999999999999999999999887743

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.41  E-value=0.00051  Score=57.95  Aligned_cols=129  Identities=14%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCC----C--------c-----hhHHHHHHHHHcCCccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSP----R--------S-----ALYKQIANAVNEGKLVP  123 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~----~--------s-----~lg~~i~~~l~~g~~ip  123 (219)
                      +...|-|.|...|||||+|+.|...+ |...|+-||.+..+-.-    .        .     ...+.+.-.+.+....|
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            34566778888899999999999888 78899998877654321    0        0     11233333444433333


Q ss_pred             HHHHHHHHHH-----HHH--hccccCCCeEEEeCccC--CHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          124 EDVIFALLSK-----RLE--EGYYRGESGFILDGIPR--TRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       124 ~e~i~~Ll~~-----~l~--~~~~~~~~g~IlDG~Pr--~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      + -...++.-     ..+  +.......-+|+|||=-  ...+..      ..|..|++..+-+++       ++|-..|
T Consensus        83 ~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~-------krRr~~R  148 (225)
T KOG3308|consen   83 E-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETC-------KRRREAR  148 (225)
T ss_pred             h-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHH-------HHhhccc
Confidence            2 22222221     111  11112234588999832  111222      357889999999999       9998888


Q ss_pred             CCC--CCCCCcc
Q 027791          195 SLC--LTCPCNT  204 (219)
Q Consensus       195 ~~~--~~~g~~~  204 (219)
                      -.-  ..+|...
T Consensus       149 t~y~p~~tgyfd  160 (225)
T KOG3308|consen  149 TYYPPDDTGYFD  160 (225)
T ss_pred             ccCCCCCCcccc
Confidence            643  2444443

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.40  E-value=0.00015  Score=64.22  Aligned_cols=31  Identities=32%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      |+|+||+|||||+++..|+++++..+||.|+
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            7899999999999999999999999999976

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00012  Score=65.82  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ..|++.||||.|||++|+.||+++.+...
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~  206 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTN  206 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence            57889999999999999999999977543

>PLN02748 tRNA dimethylallyltransferase

Probab=97.34  E-value=0.00028  Score=66.44  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      .++..|+|+||+|||||+++..||++++..+|+.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            455689999999999999999999999999999974

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.33  E-value=0.00077  Score=55.16  Aligned_cols=27  Identities=22%  Similarity=0.291  Sum_probs=23.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ++|+|++|||||++|..++...+-+++
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~   28 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVT   28 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            689999999999999999988664443

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=97.33  E-value=0.0027  Score=55.52  Aligned_cols=104  Identities=11%  Similarity=-0.054  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ..|+|+|.+||||||-.+.| |.+|+..++-                           +|.+++.+++.-.........+
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence            36889999999999999887 6788876521                           3555555555411111100123


Q ss_pred             CeEEEeC----ccCCHHH-HHHHHhhCCC-cEEEEEEeChhhhcccccchhhhhh-cCCCCCCCCC
Q 027791          144 SGFILDG----IPRTRIQ-AVSLEFCYTM-ALAFLFLFLYGCCVIIGSVILNEQV-DGSLCLTCPC  202 (219)
Q Consensus       144 ~g~IlDG----~Pr~~~q-a~~l~~~~~p-d~VI~L~~~~e~l~~~~~~~~~Rl~-~R~~~~~~g~  202 (219)
                      -.+++|=    |+....+ ...+.+.... -.+++|+++++++       +.|.+ .|+.+|-.+.
T Consensus        54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~L-------v~RY~etRR~HPL~~~  112 (286)
T COG1660          54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETL-------VRRYSETRRSHPLSED  112 (286)
T ss_pred             EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHH-------HHHHhhhhhcCCCCcc
Confidence            4578882    2222222 2222222111 2599999999999       99995 4666765443

>PRK06761 hypothetical protein; Provisional

Probab=97.28  E-value=0.00027  Score=62.46  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=26.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++.|+|.|+|||||||+++.|++++....++.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v   34 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV   34 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence            35799999999999999999999997544443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.25  E-value=0.0004  Score=52.32  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc---CCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~   94 (219)
                      +..++|.|+||+||||+++.++..+   +.+++..
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            3458899999999999999999988   6655544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.24  E-value=0.00039  Score=61.08  Aligned_cols=28  Identities=29%  Similarity=0.237  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ...+.+|.+.|+||+||||+|+.|+..+
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll  106 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALL  106 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence            4677899999999999999999998876

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0026  Score=61.64  Aligned_cols=42  Identities=21%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL  102 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~  102 (219)
                      .+|.-|+++||||+|||++++.||.+-+++++++  .+|+-+..
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v  509 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV  509 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence            3566799999999999999999999998888876  34444443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.19  E-value=0.0068  Score=48.82  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+++.|+||+||||++..++..+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~   24 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998875

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.19  E-value=0.00042  Score=63.23  Aligned_cols=29  Identities=28%  Similarity=0.266  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .+...++|.||||+||||+++.|++.++.
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34567889999999999999999999865

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.16  E-value=0.0041  Score=56.36  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|+|+|+||+||||++..|+..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357889999999999999888888765

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.16  E-value=0.00041  Score=63.78  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR   99 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr   99 (219)
                      .+..|+|+||||+|||++++.++.+++.+++.+  .+++.
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~  203 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ  203 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence            445689999999999999999999998876644  44443

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.16  E-value=0.00045  Score=65.48  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-|+|.||||+|||.+|+.+|.+++++.+.+
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            445689999999999999999999999998765

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.16  E-value=0.00048  Score=63.20  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhHHhh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQE  101 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dllr~~  101 (219)
                      ..|..+.|.||||+|||.+|+.+++++|++.|  +.++|+.+.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~  188 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN  188 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence            56677888999999999999999999999766  445555443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.14  E-value=0.00038  Score=56.88  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc---CCCe
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL---EVPH   91 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l---g~~~   91 (219)
                      +|+|+|+||+||||+.+.+.+.+   |+++
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v   30 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV   30 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence            58999999999999999999998   5553

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.13  E-value=0.00042  Score=62.48  Aligned_cols=31  Identities=16%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ..|+|.|+||+||||+++.||+++|.+++.+
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV   95 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRV   95 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence            3599999999999999999999999988743

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK12377 putative replication protein; Provisional

Probab=97.09  E-value=0.0038  Score=54.24  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR   99 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr   99 (219)
                      ..++|.|+||+|||+++..++..+   |.  .++++.+++.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~  142 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS  142 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence            458899999999999999999877   33  3455555554

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.08  E-value=0.00058  Score=63.42  Aligned_cols=32  Identities=31%  Similarity=0.527  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ...++|+||||+|||++|+.||+.++.+++.+
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i  139 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA  139 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence            45689999999999999999999999888754

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.08  E-value=0.00072  Score=53.39  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .+..|+|.|+.|+||||+++.+++.+|+.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            45679999999999999999999999874

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.04  E-value=0.00071  Score=61.42  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..++|.||||+|||++++.++.+++.+++.+
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            345699999999999999999999998877654

Many proteins may score above the trusted cutoff because an internal

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.03  E-value=0.0092  Score=52.39  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+|++|+||||.+..||..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            456788888999999999999999876

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0029  Score=62.54  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQE  101 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~  101 (219)
                      -|.-++|+||||+|||-+|+++|-+-|+|++++  .+++...
T Consensus       343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~  384 (774)
T KOG0731|consen  343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF  384 (774)
T ss_pred             CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence            345588999999999999999999999999987  3444433

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.01  E-value=0.0014  Score=55.23  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc------CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc--------------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKL--------------  121 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l------g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~--------------  121 (219)
                      ++-.++|.|+||+|||+++..++...      .+.++++++-.++....-..++-.+.++.++|..              
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~   97 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP   97 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence            66778999999999999999876432      4456665443322221111233334444444321              


Q ss_pred             ccHHHHHHHHHHHHHhccccCCCeEEEeCc
Q 027791          122 VPEDVIFALLSKRLEEGYYRGESGFILDGI  151 (219)
Q Consensus       122 ip~e~i~~Ll~~~l~~~~~~~~~g~IlDG~  151 (219)
                      ...+.+...+.+.+++.   ....+|+|+.
T Consensus        98 ~~~~~l~~~i~~~i~~~---~~~~vVIDsl  124 (226)
T PF06745_consen   98 NDLEELLSKIREAIEEL---KPDRVVIDSL  124 (226)
T ss_dssp             CCHHHHHHHHHHHHHHH---TSSEEEEETH
T ss_pred             cCHHHHHHHHHHHHHhc---CCCEEEEECH
Confidence            11223334445556553   3478999964

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.01  E-value=0.00078  Score=62.33  Aligned_cols=33  Identities=12%  Similarity=0.207  Sum_probs=29.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      +....+|+|+|++||||||+++.|++.||...+
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            356678999999999999999999999998765

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.00  E-value=0.00079  Score=62.26  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .|.-++|.||||+|||++++.+|..++.+++..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            456689999999999999999999998887755

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.00083  Score=60.06  Aligned_cols=35  Identities=29%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      .+..|+|+||.+||||-++-.||+++|.++||.|.
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DS   36 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDS   36 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecch
Confidence            35678999999999999999999999999999976

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.00  E-value=0.0021  Score=54.94  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=27.9

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccch
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGS   96 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~d   96 (219)
                      |..| ++-.++|.|+||+|||+++..++...   |  +.++++++
T Consensus        16 GG~~-~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee   59 (237)
T TIGR03877        16 GGIP-ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE   59 (237)
T ss_pred             CCCc-CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence            4444 67789999999999999998876542   3  44555543

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.99  E-value=0.0048  Score=56.95  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .-.+|.||||+||||+|+.||...+..+..+.
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s   80 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALS   80 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence            34789999999999999999999999877553

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.99  E-value=0.00076  Score=63.81  Aligned_cols=32  Identities=28%  Similarity=0.437  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +.-++|+||||+|||++++.||.+.+++++.+
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            34589999999999999999999999988765

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.98  E-value=0.00086  Score=63.26  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +..++|.||||+||||+++.|++++++.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            45688999999999999999999999887755

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.96  E-value=0.0049  Score=57.75  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+|..|+|+|++|+||||++..||..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            467889999999999999999999876

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.96  E-value=0.00097  Score=58.56  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      +..++|+||||+|||++++.++++++...
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            34588999999999999999999998654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.96  E-value=0.00088  Score=62.25  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ...++|+||||+|||++|+.||+.+++++...
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            35799999999999999999999999887643

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.96  E-value=0.0044  Score=59.09  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +..++|+||||+|||++++.+++.++.+
T Consensus       216 p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       216 PKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            4568999999999999999999998655

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK04328 hypothetical protein; Provisional

Probab=96.95  E-value=0.0022  Score=55.38  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.++|.|+||+|||+++..++..
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            6778899999999999999987654

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=96.95  E-value=0.0024  Score=60.59  Aligned_cols=32  Identities=13%  Similarity=0.070  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC---CCeeccch
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE---VPHISMGS   96 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~d   96 (219)
                      .++|+||+||||||....+-..++   ..+++..|
T Consensus       244 lilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED  278 (486)
T TIGR02533       244 IILVTGPTGSGKTTTLYAALSRLNTPERNILTVED  278 (486)
T ss_pred             EEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC
Confidence            588999999999999987666653   34555555

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PHA02244 ATPase-like protein

Probab=96.93  E-value=0.0009  Score=61.35  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV   98 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dll   98 (219)
                      .-++|.||||+|||++++.++..++.+++.+.+++
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~  154 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM  154 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence            34889999999999999999999999999876554

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.0021  Score=58.62  Aligned_cols=45  Identities=20%  Similarity=0.325  Sum_probs=36.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhcCCCc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRS  106 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~~~~s  106 (219)
                      +|.-|+++||||+|||-+|+++|.+.+..+|-+  .+|+++.+-.+.
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa  230 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA  230 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence            445588999999999999999999998877744  678888775544

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.88  E-value=0.0011  Score=59.24  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      +..++|.||||+||||+++.+++.++..+.
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            446889999999999999999999987654

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.87  E-value=0.0011  Score=59.58  Aligned_cols=30  Identities=10%  Similarity=0.204  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ..+|+|+|+||+||||+++.|+..++.+++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            468999999999999999999999999875

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.87  E-value=0.00091  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      |+|+||+||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            68999999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.87  E-value=0.001  Score=58.99  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      -.++|+||||-||||+|..+|.++|+..-
T Consensus        53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~k   81 (332)
T COG2255          53 DHVLLFGPPGLGKTTLAHIIANELGVNLK   81 (332)
T ss_pred             CeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence            46999999999999999999999988543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.83  E-value=0.0013  Score=61.52  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..++|+||||+|||++++.+|.+++.+++.+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V  248 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV  248 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence            445688999999999999999999998877654

>PF13173 AAA_14: AAA domain

Probab=96.82  E-value=0.0015  Score=50.45  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=28.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcC----CCeeccchh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSL   97 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg----~~~Is~~dl   97 (219)
                      ..++|.||.|+||||+++.+++.+.    +.+++.++.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~   40 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP   40 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence            4578999999999999999998875    677777653

>PLN02796 D-glycerate 3-kinase

Probab=96.82  E-value=0.0013  Score=59.69  Aligned_cols=38  Identities=13%  Similarity=0.104  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dll   98 (219)
                      .++.+|.|.|++||||||+++.|...+.     .-.|++|++.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4678999999999999999999998874     4567777765

>PF13245 AAA_19: Part of AAA domain

Probab=96.81  E-value=0.0014  Score=46.62  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCChH-HHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKH-VYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKS-T~a~~La~~l   87 (219)
                      ...+|.|||||||| |+.+++++.+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34667999999999 5555555544

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=96.81  E-value=0.0037  Score=60.29  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV   98 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dll   98 (219)
                      .|+|+||+||||||....+.+.++   ..+++..|=+
T Consensus       318 lilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpv  354 (564)
T TIGR02538       318 MVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPV  354 (564)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCc
Confidence            578999999999998866666653   3345555443

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.80  E-value=0.0019  Score=61.06  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=52.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCc----------ccHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKL----------VPED  125 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~----------ip~e  125 (219)
                      .++-.++|.|+||+||||++..++...   |  +.+++.++-..+.......+|-.+.++.++|.+          .+++
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~  340 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED  340 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence            367789999999999999999998855   3  566666544333332222233334444444421          1244


Q ss_pred             HHHHHHHHHHHhccccCCCeEEEeCcc
Q 027791          126 VIFALLSKRLEEGYYRGESGFILDGIP  152 (219)
Q Consensus       126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~P  152 (219)
                      .+..+ .+.+++.   ..+-+|||+..
T Consensus       341 ~~~~i-~~~i~~~---~~~~vvIDsi~  363 (484)
T TIGR02655       341 HLQII-KSEIADF---KPARIAIDSLS  363 (484)
T ss_pred             HHHHH-HHHHHHc---CCCEEEEcCHH
Confidence            44444 4455543   34679999753

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=96.80  E-value=0.0056  Score=60.09  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ....++++|.||+||||+++.|++.++...++.
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~  246 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS  246 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence            346889999999999999999999985544433

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.78  E-value=0.0043  Score=53.17  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++..++|.|++|+||||+++.++..+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            344688999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.78  E-value=0.0012  Score=53.33  Aligned_cols=31  Identities=19%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc-----CCCeeccch
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMGS   96 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~d   96 (219)
                      ++|.|+||+|||+++..++...     .+.++++++
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~   37 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE   37 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            6899999999999999887643     345566543

A related protein is found in archaea.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.76  E-value=0.0016  Score=60.18  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      ...++|.||||+||||+++.|++..+..++.+.
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~   68 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALS   68 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            346889999999999999999999988776553

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.73  E-value=0.0018  Score=53.09  Aligned_cols=27  Identities=37%  Similarity=0.492  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ...++|+||+|+|||.+++.|++.+.+
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356889999999999999999999985

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>CHL00176 ftsH cell division protein; Validated

Probab=96.73  E-value=0.0017  Score=63.41  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-++|.||||+|||++++.+|.+.++|++.+
T Consensus       215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            345699999999999999999999999988865

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.73  E-value=0.0012  Score=49.64  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |.|.|+||+|||++++.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999866

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.73  E-value=0.0016  Score=54.53  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |..|+|+||+|+||||.+..||.++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            4678999999999999999999887

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.70  E-value=0.0019  Score=61.71  Aligned_cols=30  Identities=23%  Similarity=0.184  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      ...+|.|||||||||..+.||+++|+.++.
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            477789999999999999999999987663

>TIGR00959 ffh signal recognition particle protein

Probab=96.70  E-value=0.029  Score=52.52  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+|..+++.|++||||||++..||..+
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            357789999999999999988888764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK09087 hypothetical protein; Validated

Probab=96.70  E-value=0.0016  Score=55.55  Aligned_cols=35  Identities=20%  Similarity=0.064  Sum_probs=30.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV   98 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dll   98 (219)
                      ..++|.|++|||||++++.+++..+..+++.+++.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~   79 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG   79 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence            45789999999999999999999999888886533

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.69  E-value=0.0045  Score=52.46  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.++|.|+||+|||+++..++..
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~   48 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYG   48 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHH
Confidence            6677889999999999999999654

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.69  E-value=0.0037  Score=53.43  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.++|.|+||+||||++..++..
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~   47 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYG   47 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4558999999999999998665443

>PRK10436 hypothetical protein; Provisional

Probab=96.68  E-value=0.0059  Score=57.61  Aligned_cols=36  Identities=19%  Similarity=0.150  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHh
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQ  100 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~  100 (219)
                      .|+|.||+||||||....+-+.+   +..++++.|=++-
T Consensus       220 liLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~  258 (462)
T PRK10436        220 LILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI  258 (462)
T ss_pred             eEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence            67899999999999876555554   3345666654443

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.68  E-value=0.0026  Score=60.06  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhh
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQE  101 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~  101 (219)
                      .|+|+||.||||||..-.+-++++-   .++++.|=++-.
T Consensus       260 liLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~  299 (500)
T COG2804         260 LILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ  299 (500)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee
Confidence            5779999999999887777776633   355665544333

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.66  E-value=0.002  Score=63.28  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           53 LDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        53 ~~~~~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++...+........+++||||.||||+|+.+|+.-|+.++.+
T Consensus       316 ~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  316 MELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             cccCccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            333334444445677899999999999999999999999866

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.66  E-value=0.0011  Score=57.08  Aligned_cols=21  Identities=38%  Similarity=0.639  Sum_probs=18.5

Q ss_pred             EEcCCCCChHHHHHHHHHHcC
Q 027791           68 LIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        68 l~G~PGSGKST~a~~La~~lg   88 (219)
                      |+|||||||||+++.+.+.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999773

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.66  E-value=0.0019  Score=63.90  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +.-|+|+||||+|||++++.+|.+++.++++.
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v  518 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV  518 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            34589999999999999999999999888865

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0018  Score=63.44  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .++++++|.||||+|||++++.+|+.+|-.++-+
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence            5778999999999999999999999998777644

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.64  E-value=0.002  Score=48.13  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      +|+|+|++||||||+.+.|.....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCC
Confidence            689999999999999999987553

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK10867 signal recognition particle protein; Provisional

Probab=96.64  E-value=0.041  Score=51.55  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+|..|+++|++||||||.+..||..|
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l  124 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYL  124 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788999999999999888888754

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0019  Score=58.21  Aligned_cols=34  Identities=32%  Similarity=0.460  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ...-.|+++||.|||||-+|+.||+.+++|+--.
T Consensus        95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA  128 (408)
T COG1219          95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA  128 (408)
T ss_pred             eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence            4556899999999999999999999999997633

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.63  E-value=0.0012  Score=52.02  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      .+++.|+||.||||+++.+|+.+|..+..
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~R   29 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKR   29 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence            37899999999999999999999886653

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK13695 putative NTPase; Provisional

Probab=96.62  E-value=0.0019  Score=52.27  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |+|+|+|+||+||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999987765

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.61  E-value=0.0017  Score=54.18  Aligned_cols=36  Identities=17%  Similarity=0.143  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL   97 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dl   97 (219)
                      .+..++|+|+||+|||++++.++....     +.+++..++
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            456788999999999999999998652     345555444

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.61  E-value=0.0017  Score=57.21  Aligned_cols=41  Identities=22%  Similarity=0.382  Sum_probs=33.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL  102 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~  102 (219)
                      -|..|+|.||||+|||..|+.||.+..+|.+.+  .+|+-++.
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV  192 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV  192 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence            457899999999999999999999999988865  34555443

>PLN02772 guanylate kinase

Probab=96.61  E-value=0.022  Score=52.65  Aligned_cols=30  Identities=23%  Similarity=0.175  Sum_probs=24.8

Q ss_pred             CCCCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        58 ~~~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+.....++|+||+|+||+|+.++|.+.+
T Consensus       130 ~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~  159 (398)
T PLN02772        130 VRGNAEKPIVISGPSGVGKGTLISMLMKEF  159 (398)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhhhc
Confidence            334455678899999999999999998876

>PRK06620 hypothetical protein; Validated

Probab=96.60  E-value=0.0018  Score=54.89  Aligned_cols=30  Identities=13%  Similarity=0.098  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      ..++|.||||+|||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            347899999999999999999988875554

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0022  Score=60.44  Aligned_cols=34  Identities=24%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .+..++|.||||+|||.+|+.+|..++.++++.+
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~  308 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK  308 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence            3347999999999999999999998888888764

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0071  Score=57.85  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .-|.-|+++||||.|||-+|+.+|-+-|+|++.+
T Consensus       335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            3445689999999999999999999999999976

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0044  Score=55.60  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhHHhhcCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSP  104 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dllr~~~~~  104 (219)
                      .-|+++||||.|||.+|+.+|.+-+-.++  |..||+.+.+-.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE  209 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE  209 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence            35889999999999999999999876555  457888887643

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.57  E-value=0.0033  Score=49.29  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=26.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .|.+|+.+.|.|+||+||+.+++.||+.+
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999999974

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.56  E-value=0.003  Score=56.36  Aligned_cols=33  Identities=18%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      +..|+|+||.|||||.+|-.||++ +..+||.|.
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS   36 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS   36 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence            347899999999999999999999 568999865

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.56  E-value=0.017  Score=52.14  Aligned_cols=121  Identities=17%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHc---CC-CeeccchhHHhhcCCC-------------------c---hhHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EV-PHISMGSLVRQELSPR-------------------S---ALYKQIA  113 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l---g~-~~Is~~dllr~~~~~~-------------------s---~lg~~i~  113 (219)
                      +.+|..|+|+|..|+||||....||..|   |. ..+..+|-+|...-.+                   .   ..+..++
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            3578999999999999999999999988   55 3456778787754311                   1   1122233


Q ss_pred             HHHHcCCc-----------ccHHHHHHHHH-HHHHhcc---ccCCCeEEEeCccC--CHHHHHHHHhhCCCcEEEEEEeC
Q 027791          114 NAVNEGKL-----------VPEDVIFALLS-KRLEEGY---YRGESGFILDGIPR--TRIQAVSLEFCYTMALAFLFLFL  176 (219)
Q Consensus       114 ~~l~~g~~-----------ip~e~i~~Ll~-~~l~~~~---~~~~~g~IlDG~Pr--~~~qa~~l~~~~~pd~VI~L~~~  176 (219)
                      ....++-.           -..+++.+|=+ .++-+..   .+.+.-+++|+.-.  ...|++.|.+...+|-+|.=++|
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlD  295 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLD  295 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecc
Confidence            33222211           01123322211 1222111   11223345587643  46899999988888888888887


Q ss_pred             hhhh
Q 027791          177 YGCC  180 (219)
Q Consensus       177 ~e~l  180 (219)
                      -+--
T Consensus       296 gtAK  299 (340)
T COG0552         296 GTAK  299 (340)
T ss_pred             cCCC
Confidence            5443

>PHA03134 thymidine kinase; Provisional

Probab=96.56  E-value=0.053  Score=49.13  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH--cCCCeeccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL--LEVPHISMG   95 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~--lg~~~Is~~   95 (219)
                      .+-.+|.|.|+.|.||||.++.+.+.  .+-+++.+.
T Consensus        11 ~~~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~p   47 (340)
T PHA03134         11 VRIVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFP   47 (340)
T ss_pred             ccEEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEec
Confidence            35578999999999999999998863  243444443

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.55  E-value=0.0028  Score=53.35  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSL   97 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dl   97 (219)
                      ..++|+|++|+|||++++.++...     .+.+++..++
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            458899999999999999999876     5566666554

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.54  E-value=0.04  Score=45.31  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .+..|.++||+|+||.|+.......+.-
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~   31 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAG   31 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhcc
Confidence            4678999999999999999998888743

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.54  E-value=0.0026  Score=59.31  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dll   98 (219)
                      .+|..|.|.|++||||||+++.|...+.     +..|++||+.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            4678999999999999999999987662     5567888865

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.54  E-value=0.026  Score=52.77  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+|++||||||.+..||..+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999866

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK06526 transposase; Provisional

Probab=96.53  E-value=0.0024  Score=55.57  Aligned_cols=40  Identities=20%  Similarity=0.160  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQ  100 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~  100 (219)
                      ..+..++|+||||+|||+++..|+.+.   |.  .++++.+++..
T Consensus        96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            355679999999999999999998764   33  34455555443

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.0022  Score=58.42  Aligned_cols=46  Identities=24%  Similarity=0.315  Sum_probs=36.6

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL  102 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~  102 (219)
                      +..-.++.-|+++||||+|||-+|+++|++-|..+|++  +.+..++.
T Consensus       121 g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf  168 (386)
T KOG0737|consen  121 GKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF  168 (386)
T ss_pred             cccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence            45556777899999999999999999999999988865  44444443

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.50  E-value=0.012  Score=53.52  Aligned_cols=113  Identities=13%  Similarity=0.048  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ..+++.|++|||||++.+.|.+. +..+++..++.+..   ++.+|+.-      ....+.+.....|...+....  ..
T Consensus       142 ~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~------~~qpsQ~~Fe~~l~~~l~~~~--~~  209 (345)
T PRK11784        142 PLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG------GPQPSQKDFENLLAEALLKLD--PA  209 (345)
T ss_pred             ceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC------CCCcchHHHHHHHHHHHHcCC--CC
Confidence            45779999999999999999754 78899887765542   33443321      123345666677777776543  35


Q ss_pred             CeEEEeCccCCHHHH---HHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          144 SGFILDGIPRTRIQA---VSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa---~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..+++++..+.+...   +.|-+...-..+|.+++|.+..       ++|+.+-.
T Consensus       210 ~~i~vE~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~R-------v~~l~~~Y  257 (345)
T PRK11784        210 RPIVVEDESRRIGRVHLPEALYEAMQQAPIVVVEAPLEER-------VERLLEDY  257 (345)
T ss_pred             CeEEEEeccccccCccCCHHHHHHHhhCCEEEEECCHHHH-------HHHHHHHh
Confidence            678888765543221   2221111223588999999999       89987654

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.48  E-value=0.0036  Score=48.77  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~   95 (219)
                      .+..|++.|+-||||||+++.+++.+|+.  +-|+.
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPT   49 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPT   49 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--S----TT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCC
Confidence            55789999999999999999999999884  44443

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.48  E-value=0.003  Score=59.65  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+..++|.||||+||||+|+.+++.+++.
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~   63 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSLNCE   63 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            34558999999999999999999998764

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.47  E-value=0.0034  Score=57.16  Aligned_cols=29  Identities=34%  Similarity=0.449  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+.-++|.||||+||||+++.+++.+++.
T Consensus        37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961         37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            34567999999999999999999999764

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.47  E-value=0.0029  Score=52.06  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHhh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQE  101 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~~  101 (219)
                      .+..++|+|+||+|||.+|..++.++     .+.++++.+|+...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            45679999999999999999998754     45667777777654

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.45  E-value=0.008  Score=56.85  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHH----c--CCCeeccc
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKL----L--EVPHISMG   95 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~----l--g~~~Is~~   95 (219)
                      |..| ++-.++|.|+|||||||+|..++.+    .  .+.+|+..
T Consensus        16 GGlp-~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        16 GGLP-IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             CCCC-CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            3344 6778999999999999999998442    2  34556554

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.45  E-value=0.0023  Score=60.02  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      -|++-|+||+||||+|+.||+.|
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHH
Confidence            38899999999999999999988

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.43  E-value=0.0028  Score=50.72  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=18.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+..++|+|++|+|||++.+.+.+.+
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345779999999999999999888766

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.43  E-value=0.0031  Score=62.50  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..|+|+||||+||||+++.++..++.+++.+
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i  243 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI  243 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence            345689999999999999999999998877654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.43  E-value=0.0025  Score=49.36  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++|+|+||+||||++..++...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.43  E-value=0.0036  Score=51.16  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      +..|+|+||+||||+|++++|.+.+.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            34578999999999999999999874

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PLN03025 replication factor C subunit; Provisional

Probab=96.42  E-value=0.0031  Score=56.24  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      +.++|.||||+||||+++.+++.+..
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~   60 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELLG   60 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhc
Confidence            35789999999999999999998743

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.42  E-value=0.0028  Score=50.70  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|.|+|+.||||||+++.|-..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            57999999999999999999763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00763 lon ATP-dependent protease La

Probab=96.41  E-value=0.0032  Score=62.81  Aligned_cols=33  Identities=27%  Similarity=0.514  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++..++|+||||+|||++++.||+.++.+++.+
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i  378 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF  378 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence            445789999999999999999999998877643

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]

Probab=96.41  E-value=0.012  Score=48.29  Aligned_cols=29  Identities=14%  Similarity=0.154  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      +.|+|+|+.-||||++|+.++.+.+.+++
T Consensus         1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~   29 (175)
T COG2087           1 MMILVTGGARSGKSSFAEALAGESGGQVL   29 (175)
T ss_pred             CeEEEecCccCCchHHHHHHHHhhCCceE
Confidence            46899999999999999999998665543

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.40  E-value=0.0083  Score=50.49  Aligned_cols=24  Identities=25%  Similarity=0.552  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++-.++|.|+||+||||++..++.
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~   42 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAY   42 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHH
Confidence            677899999999999999988764

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.40  E-value=0.0033  Score=55.56  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++|.||||+||||+++.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            488999999999999999999874

>PRK06893 DNA replication initiation factor; Validated

Probab=96.38  E-value=0.0033  Score=53.53  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~   95 (219)
                      +.++|.||||+|||++++.++.++     .+.++++.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            457899999999999999999875     55666653

>TIGR00101 ureG urease accessory protein UreG

Probab=96.37  E-value=0.0038  Score=52.20  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |.+|.|+|++||||||+.+++.+.+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998875

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0027  Score=59.14  Aligned_cols=30  Identities=20%  Similarity=0.458  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      =.+|.||||+||||+..++|..+++.+.+.
T Consensus       237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             cceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            478999999999999999999999988765

>cd04163 Era Era subfamily

Probab=96.36  E-value=0.0035  Score=48.33  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|.++|++||||||+...|...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.35  E-value=0.0045  Score=54.63  Aligned_cols=31  Identities=16%  Similarity=0.111  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      .+..+++.||||+||||+++.+++.++..++
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~   72 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL   72 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence            3456667899999999999999998866544

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.34  E-value=0.003  Score=54.04  Aligned_cols=33  Identities=12%  Similarity=0.052  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccch
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS   96 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~d   96 (219)
                      ..++|+||||+|||++++.++....     +.+++.++
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4688999999999999999998654     45666654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.33  E-value=0.023  Score=52.53  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..|+++||+|+||||.+..||..+
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999876

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.33  E-value=0.0042  Score=56.75  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC--CCee--ccchhHHhhcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHI--SMGSLVRQELS  103 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~I--s~~dllr~~~~  103 (219)
                      -.+.-|++.||||+|||.+|-.+|++||  +|+.  +-++++..++.
T Consensus        63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k  109 (450)
T COG1224          63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK  109 (450)
T ss_pred             ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence            3456789999999999999999999996  4554  44555555543

>PRK09183 transposase/IS protein; Provisional

Probab=96.31  E-value=0.004  Score=54.22  Aligned_cols=38  Identities=26%  Similarity=0.297  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dll   98 (219)
                      .++..++|+||||+|||+++..|+...   |.  .+++..+++
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            455678899999999999999997653   33  344544444

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.30  E-value=0.018  Score=47.23  Aligned_cols=38  Identities=13%  Similarity=0.098  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQ  100 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~  100 (219)
                      +..+++-||.||||||+-..+--.+  ++.+|+.|++.-+
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~   41 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ   41 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh
Confidence            4567888999999999876554443  6678888765543

>PRK06921 hypothetical protein; Provisional

Probab=96.30  E-value=0.043  Score=48.01  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ...++|.|+||+|||.++..++..+
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l  141 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANEL  141 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999999998865

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.30  E-value=0.004  Score=66.74  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR   99 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr   99 (219)
                      .|.-|+|+||||+|||.+|+.||.+.++|.|++  .+++.
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            345689999999999999999999999998754  55664

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.30  E-value=0.0058  Score=50.68  Aligned_cols=36  Identities=25%  Similarity=0.195  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccch
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGS   96 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~d   96 (219)
                      .++..+.|.|+||||||++|..++...   |  +.+|++++
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            477889999999999999999998643   3  55666643

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.30  E-value=0.0047  Score=61.57  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=27.7

Q ss_pred             CCCe-EEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        61 ~~~~-~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      .+|. .++|+||||+|||++|+.||+.++.+++.
T Consensus       485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~  518 (758)
T PRK11034        485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR  518 (758)
T ss_pred             CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence            3443 58899999999999999999999877653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.29  E-value=0.0039  Score=59.40  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      -+..++|+||||+||||+|+.+|+.+++.+
T Consensus        42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            356799999999999999999999998854

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.26  E-value=0.0047  Score=56.67  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC--CCeecc--chhHHhh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM--GSLVRQE  101 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~--~dllr~~  101 (219)
                      .+..|+|.||||+|||.+|-.+|+++|  +|++.+  .+++-.+
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e   92 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSE   92 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTT
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecc
Confidence            356789999999999999999999996  676654  4444433

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.0037  Score=61.41  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCee--ccch
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGS   96 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~d   96 (219)
                      .-++++++|.||||.|||++++.||+.+|-.++  |.|-
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG  473 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG  473 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence            358899999999999999999999999976655  4443

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.25  E-value=0.026  Score=50.11  Aligned_cols=44  Identities=23%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~  100 (219)
                      +....+|..|+++|..||||||+.++|-..+     .-.+|+.|--+++
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~   61 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN   61 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence            4455788999999999999999999998766     2345666655554

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.25  E-value=0.0048  Score=53.98  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..+|-|+||||+||||+...|.+.|
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999877

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.24  E-value=0.0044  Score=51.61  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .|+|.||+||||||+...|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            478999999999999998887764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=96.24  E-value=0.0047  Score=55.28  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVR   99 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr   99 (219)
                      +-.+..+|.||||+|||+.+..+|..++.+..-..-++.
T Consensus        55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~   93 (346)
T KOG0989|consen   55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE   93 (346)
T ss_pred             cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence            455789999999999999999999999887766555553

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.23  E-value=0.005  Score=55.69  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+|+|||||||++..|...+
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999987765

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.23  E-value=0.0038  Score=52.83  Aligned_cols=31  Identities=32%  Similarity=0.567  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      ..++++|+||+|||++++++..-  +|.++..+
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~l--LP~l~~~e   53 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSL--LPPLTEEE   53 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHC--S--CCEEC
T ss_pred             CCeEEECCCCCCHHHHHHHHHHh--CCCCchHH
Confidence            56999999999999999999874  44444433

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.23  E-value=0.015  Score=50.18  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC----C---CeeccchhHHhhcCCCchhHHHHHHHHHcC-----CcccHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE----V---PHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVIF  128 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg----~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip~e~i~  128 (219)
                      .....|.|.|++|+||||+|..+++...    +   ..++.+.    . .....+.+.+...+...     .....+...
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~   91 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----N-PSLEQLLEQILRQLGEPDSSISDPKDIEELQ   91 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----c-ccccccccccccccccccccccccccccccc
Confidence            4567888999999999999999997721    1   1122211    0 01122344455555443     122334455


Q ss_pred             HHHHHHHHhccccCCCeEEEeCcc
Q 027791          129 ALLSKRLEEGYYRGESGFILDGIP  152 (219)
Q Consensus       129 ~Ll~~~l~~~~~~~~~g~IlDG~P  152 (219)
                      ..+.+.+...    ..-+|+|+.-
T Consensus        92 ~~l~~~L~~~----~~LlVlDdv~  111 (287)
T PF00931_consen   92 DQLRELLKDK----RCLLVLDDVW  111 (287)
T ss_dssp             HHHHHHHCCT----SEEEEEEEE-
T ss_pred             ccchhhhccc----cceeeeeeec
Confidence            5556665542    3468999864

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.23  E-value=0.048  Score=53.60  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .+..++|+|++|+||||+++.|++.+++
T Consensus        37 LpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         37 LHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4466899999999999999999999987

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.21  E-value=0.0045  Score=46.38  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +|+|+|.||+||||+...|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.21  E-value=0.0052  Score=55.19  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+||+|+||||++..||..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788999999999999999999876

>PRK05973 replicative DNA helicase; Provisional

Probab=96.20  E-value=0.015  Score=50.16  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~   95 (219)
                      .++-.++|.|+||+|||+++..++...   |  +.+++..
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE  101 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE  101 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence            367788899999999999999887744   4  3455553

>PRK08181 transposase; Validated

Probab=96.19  E-value=0.0057  Score=53.76  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHHhh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQE  101 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr~~  101 (219)
                      ++..++|+||||+|||.++..++...   |  +.++++.+++.+.
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            45569999999999999999998643   4  5667777777653

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.19  E-value=0.0049  Score=55.17  Aligned_cols=30  Identities=33%  Similarity=0.613  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .++|.|+||+|||++++.+|+.++.+++..
T Consensus        45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i   74 (329)
T COG0714          45 HVLLEGPPGVGKTLLARALARALGLPFVRI   74 (329)
T ss_pred             CEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence            488999999999999999999998766643

>PF13479 AAA_24: AAA domain

Probab=96.18  E-value=0.0038  Score=52.55  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNL   83 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~L   83 (219)
                      ++.+++|.|+||+||||++..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            5789999999999999999887

>cd04155 Arl3 Arl3 subfamily

Probab=96.18  E-value=0.0051  Score=48.77  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +..+|+|+|++||||||+.+.|...
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            4688999999999999999999764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.17  E-value=0.0057  Score=57.88  Aligned_cols=29  Identities=31%  Similarity=0.480  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      +..++|+||||+||||+|+.+|+.+++..
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~   68 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCEN   68 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence            45689999999999999999999998753

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.17  E-value=0.0046  Score=58.88  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      -+..|+|+||||+||||+++.+++.+.+
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4466899999999999999999999875

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.15  E-value=0.0063  Score=60.38  Aligned_cols=39  Identities=28%  Similarity=0.445  Sum_probs=30.0

Q ss_pred             CCCCe-EEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhH
Q 027791           60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLV   98 (219)
Q Consensus        60 ~~~~~-~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dll   98 (219)
                      +.+|. .++|+||||+|||++|+.||+.++.+++  ++.++.
T Consensus       480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~  521 (731)
T TIGR02639       480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM  521 (731)
T ss_pred             CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence            44554 4789999999999999999999977554  454543

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.14  E-value=0.0073  Score=48.62  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .+.-++|.|++|+||||++..|.++ |...++-|
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            3567999999999999999988764 67776443

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.13  E-value=0.006  Score=60.52  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      ...++|.||||+||||+++.+++.++..++.++.
T Consensus        52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna   85 (725)
T PRK13341         52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA   85 (725)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence            3467899999999999999999998877665543

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.13  E-value=0.0044  Score=52.94  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+..++|+|+||+||||+++.|+.
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcCC
Confidence            4467799999999999999999974

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK04296 thymidine kinase; Provisional

Probab=96.13  E-value=0.0053  Score=50.80  Aligned_cols=25  Identities=8%  Similarity=-0.171  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..++++|+||+||||.+..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            4678899999999999999999876

>PHA03135 thymidine kinase; Provisional

Probab=96.12  E-value=0.13  Score=46.81  Aligned_cols=26  Identities=15%  Similarity=0.178  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..-++|.|.|+.|+||||+++.+++.
T Consensus         8 ~~~~rIYlDG~~GvGKTT~~~~l~~~   33 (343)
T PHA03135          8 AQLIRVYLDGPFGIGKTSMLNEMPDH   33 (343)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            46678999999999999999999885

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.11  E-value=0.0061  Score=61.01  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++..++|+||||+||||+++.+++.++.+++.+
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i  380 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM  380 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            456799999999999999999999999887543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.09  E-value=0.061  Score=53.70  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+..++|+|++|+||||+++.|++.+++.
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            34567899999999999999999999875

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.09  E-value=0.003  Score=54.66  Aligned_cols=22  Identities=41%  Similarity=0.771  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      -+|+|||||||||.|.-..+-+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fl   26 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFL   26 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHH
Confidence            4689999999999998777655

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.031  Score=54.22  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL  102 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~  102 (219)
                      .-|.-|++.||||+|||.+|+++|-+-++|.+++  .|.++...
T Consensus       181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV  224 (596)
T COG0465         181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV  224 (596)
T ss_pred             ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence            4556688999999999999999999999997755  45555444

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.015  Score=52.41  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhHHhhc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQEL  102 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dllr~~~  102 (219)
                      ..|..+.+.||||.|||-+|+.++..+|+..+  +.+.++.+.+
T Consensus       164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi  207 (388)
T KOG0651|consen  164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI  207 (388)
T ss_pred             CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence            45567788899999999999999999988766  4455555543

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.06  E-value=0.0055  Score=59.29  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+...++|.||||+||||+++.|++.+
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHH
Confidence            356789999999999999999999866

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.06  E-value=0.0069  Score=55.82  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+.-++|.||||+||||+|..+|+.+.+.
T Consensus        37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34568999999999999999999999874

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0053  Score=59.44  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=32.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhhc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL  102 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~~  102 (219)
                      |--|++.||||||||-+|+.+|.+-|..+|++  .+|+.++.
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV  586 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV  586 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence            45589999999999999999999998888886  34555543

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.01  E-value=0.0066  Score=49.88  Aligned_cols=26  Identities=15%  Similarity=0.253  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+-.++|.|++||||||+.+.|...+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45678999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.01  E-value=0.0071  Score=49.82  Aligned_cols=27  Identities=15%  Similarity=-0.029  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++..+.|+|++||||||+.+.|...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            456788999999999999999998774

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.00  E-value=0.0064  Score=58.10  Aligned_cols=31  Identities=29%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      +....+|+||+||||||..+.|++++|+.++
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            4456778899999999999999999999876

>cd01394 radB RadB

Probab=95.97  E-value=0.0098  Score=49.67  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~   95 (219)
                      .++..+.|.|+|||||||++..++...     .+.+|+.+
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            367788899999999999999999764     33456554

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.96  E-value=0.016  Score=55.06  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~   95 (219)
                      ++-.++|.|+||+|||+++..++...     .+.+|++.
T Consensus       272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e  310 (509)
T PRK09302        272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE  310 (509)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            56788899999999999999887543     45556554

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.95  E-value=0.009  Score=42.09  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc---CCCeeccch
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL---EVPHISMGS   96 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~d   96 (219)
                      +++.|.+|+||||++..++..+   |..+.-.+|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d   35 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDD   35 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECC
Confidence            6789999999999999999987   666665653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.95  E-value=0.0061  Score=46.83  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            45678999999999999999998654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.0067  Score=55.97  Aligned_cols=30  Identities=17%  Similarity=0.355  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      -++++||||+|||-+|+.+|.+-|..++++
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV  276 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV  276 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence            578999999999999999999999877765

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=95.93  E-value=0.0075  Score=47.28  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +|+|+|+||+||||+..++..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999975

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=95.93  E-value=0.0078  Score=46.62  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.||+||||+..++...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999863

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.93  E-value=0.0082  Score=57.02  Aligned_cols=29  Identities=28%  Similarity=0.298  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+.-++|.||+|+||||+|+.+|+.+++.
T Consensus        34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         34 IPQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            34569999999999999999999988764

>PRK13768 GTPase; Provisional

Probab=95.93  E-value=0.0075  Score=52.25  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++.++|.|++|+||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            4678899999999999999998766

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.93  E-value=0.0085  Score=45.59  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      .+-.+.|.||+||||||+++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            45678999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.93  E-value=0.0086  Score=57.59  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      +..++|.||||+||||+|+.||+.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345889999999999999999999876

>PHA02624 large T antigen; Provisional

Probab=95.92  E-value=0.0093  Score=57.88  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      +...|+|.||||+||||++..|.+.+|..++++.
T Consensus       430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN  463 (647)
T PHA02624        430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN  463 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence            5568999999999999999999999977778764

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.92  E-value=0.018  Score=54.66  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++-.++|.|+||+|||+++..++.
T Consensus        30 ~Gs~~li~G~pGsGKT~l~~qf~~   53 (509)
T PRK09302         30 KGRPTLVSGTAGTGKTLFALQFLV   53 (509)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            577889999999999999998765

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.91  E-value=0.0087  Score=52.01  Aligned_cols=38  Identities=13%  Similarity=0.166  Sum_probs=28.3

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~   95 (219)
                      |..| ++-.++|.|+||+||||+|..++...     .+.++++.
T Consensus        31 GGip-~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        31 GGIP-AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCeE-CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            4444 67788999999999999999987643     34555653

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=95.91  E-value=0.017  Score=47.04  Aligned_cols=43  Identities=30%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc----CCCeeccchhHHhhcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSLVRQELS  103 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l----g~~~Is~~dllr~~~~  103 (219)
                      .++..|-++|.+||||||+|-.|.+.+    ...++--+|-+|.-++
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN   75 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN   75 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence            456777899999999999999998876    3345555666666554

>smart00175 RAB Rab subfamily of small GTPases

Probab=95.91  E-value=0.0073  Score=47.07  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+++|+|||||||+.+++..
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3789999999999999999974

Rab GTPases are implicated in vesicle trafficking.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=95.91  E-value=0.0075  Score=47.01  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|+||+||||+..++...
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            37999999999999999999764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=95.90  E-value=0.0071  Score=49.48  Aligned_cols=32  Identities=28%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC-CCeeccchh
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE-VPHISMGSL   97 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg-~~~Is~~dl   97 (219)
                      ++=++.+||||||++..|++-|| .-||.-|++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            34468999999999999999999 999988875

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=95.90  E-value=0.0079  Score=58.91  Aligned_cols=31  Identities=23%  Similarity=0.503  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      -+++.||||+||||+++.++.+++++++..+
T Consensus       187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is  217 (644)
T PRK10733        187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS  217 (644)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            3899999999999999999999999887653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.89  E-value=0.0085  Score=45.34  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+|+++|.+||||||+...+....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999997654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.89  E-value=0.0086  Score=52.74  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..|.|+||+|+||||++..|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56688899999999999999998865

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0086  Score=54.46  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      --|..|+++||.|+|||.+|++||+--|.|+|.+
T Consensus        48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220          48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             cCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            3567899999999999999999999999999865

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=95.88  E-value=0.043  Score=49.51  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      +-..|+++|+.|||||-++-.||++++..+|+.|.
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk   40 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK   40 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence            45678899999999999999999999999998754

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.87  E-value=0.022  Score=47.86  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~d   96 (219)
                      ++-.++|.|+||+|||+++..++...   |  +-++++.+
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~   54 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE   54 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            56788899999999999999887643   3  34566543

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=95.87  E-value=0.009  Score=49.85  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ..++.|.|+|++||||||+.+.+.+.++
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4578899999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.87  E-value=0.0095  Score=56.84  Aligned_cols=29  Identities=24%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+.-++|.||||+||||+|+.||+.+++.
T Consensus        37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         37 LHHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34568999999999999999999999875

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.86  E-value=0.0077  Score=52.19  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR   99 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr   99 (219)
                      -++|.|+||+|||+++..++..+   |.  .++++.+++.
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~  140 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS  140 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence            58899999999999999999987   33  3445555543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.85  E-value=0.0088  Score=47.35  Aligned_cols=29  Identities=14%  Similarity=0.029  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~I   92 (219)
                      ++|.|+|+.+|||||+++.|...+   |+.+.
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~   32 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA   32 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence            468899999999999999998876   55444

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.85  E-value=0.01  Score=58.27  Aligned_cols=30  Identities=27%  Similarity=0.318  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      .+..++|.||||+||||+|+.+|+.+++.+
T Consensus        36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~~   65 (702)
T PRK14960         36 LHHAYLFTGTRGVGKTTIARILAKCLNCET   65 (702)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            346789999999999999999999998753

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.85  E-value=0.0085  Score=60.50  Aligned_cols=29  Identities=24%  Similarity=0.271  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+..++|+||||+||||+++.|++.+++.
T Consensus        37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            34567999999999999999999999875

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.84  E-value=0.0095  Score=52.80  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+|+|||||||++..|+..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            356788999999999999999988865

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.83  E-value=0.01  Score=56.88  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .+..++|+||||+||||+|+.+++.+++.
T Consensus        37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969         37 LHHAYLFTGTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34568999999999999999999999874

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=95.83  E-value=0.0088  Score=45.97  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +.+|+++|++|+||||+...+...
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999998753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=95.83  E-value=0.095  Score=44.39  Aligned_cols=30  Identities=3%  Similarity=-0.186  Sum_probs=25.0

Q ss_pred             CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCC
Q 027791          165 YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCP  201 (219)
Q Consensus       165 ~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g  201 (219)
                      ..+|.+|+|++++|++       .+|+..|...++.|
T Consensus       152 v~~dgiIYLrasPetc-------~~Ri~~R~R~EE~g  181 (244)
T KOG4235|consen  152 VSLDGIIYLRASPETC-------YKRIYLRAREEEKG  181 (244)
T ss_pred             cccceEEEeecChHHH-------HHHHHHHhhhhhcC
Confidence            3689999999999999       99999886655443

>cd00154 Rab Rab family

Probab=95.82  E-value=0.008  Score=45.92  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+++|+|||||||+...+..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~   22 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVD   22 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.80  E-value=0.009  Score=49.61  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56688999999999999999998654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd04136 Rap_like Rap-like subfamily

Probab=95.80  E-value=0.0094  Score=46.49  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.||+||||+..++..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999875

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=95.79  E-value=0.0083  Score=46.96  Aligned_cols=22  Identities=18%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|++|+||||+.++|..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK10646 ADP-binding protein; Provisional

Probab=95.78  E-value=0.014  Score=47.25  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .+..|++.|.-|+||||+++.|++.+|+
T Consensus        27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         27 GATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4457899999999999999999999987

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=95.78  E-value=0.009  Score=51.96  Aligned_cols=40  Identities=33%  Similarity=0.454  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHHhh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQE  101 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr~~  101 (219)
                      ++..++|+|+||+|||.++..|+.++   |+  .++++.|++.+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L  148 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL  148 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            55679999999999999999998876   33  455667776654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.78  E-value=0.0094  Score=49.71  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            56689999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.77  E-value=0.0096  Score=48.72  Aligned_cols=26  Identities=35%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55679999999999999999998643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=95.76  E-value=0.007  Score=50.62  Aligned_cols=22  Identities=32%  Similarity=0.296  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |+|.|+|||||||..+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999885

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.76  E-value=0.0097  Score=54.69  Aligned_cols=27  Identities=30%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.++|+||+|+||||++..|+..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356688899999999999999999764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.76  E-value=0.0088  Score=49.70  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      + ++.|+|++||||||+.+.|+-.+
T Consensus        26 g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          26 G-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             C-cEEEECCCCCCHHHHHHHHhCCC
Confidence            5 89999999999999999998543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.75  E-value=0.01  Score=49.36  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56679999999999999999998654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.74  E-value=0.011  Score=53.59  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..++|.|+||+|||++++.+.+.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            44568899999999999999999876

>PTZ00202 tuzin; Provisional

Probab=95.74  E-value=0.054  Score=51.22  Aligned_cols=30  Identities=17%  Similarity=0.117  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      .+.+++|+|++|+||||+++.+...++.+.
T Consensus       285 ~privvLtG~~G~GKTTLlR~~~~~l~~~q  314 (550)
T PTZ00202        285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPA  314 (550)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhcCCceE
Confidence            345889999999999999999998888553

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.74  E-value=0.0098  Score=49.60  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998654

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.72  E-value=0.0088  Score=54.02  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~  100 (219)
                      ..++|.|++|+|||.++..++.++     .+.++++.+++..
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~  225 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI  225 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence            558999999999999999999976     4456666666554

>cd00157 Rho Rho (Ras homology) family

Probab=95.72  E-value=0.01  Score=46.72  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++|+++|++|+||||+..+|...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.71  E-value=0.01  Score=49.35  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56689999999999999999998643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd00876 Ras Ras family

Probab=95.71  E-value=0.008  Score=46.48  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +|+|+|++||||||+..++..
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.71  E-value=0.011  Score=49.14  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999998644

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.71  E-value=0.0099  Score=53.04  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++.+|-|+|+||+||||+...|..+|
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            577899999999999999999999987

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=95.71  E-value=0.009  Score=56.15  Aligned_cols=27  Identities=37%  Similarity=0.441  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      +..+++.|+||+|||++|+.|+..++.
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            457889999999999999999998753

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.70  E-value=0.011  Score=47.87  Aligned_cols=28  Identities=25%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +..++++.|.||+||||+...|+++ |+.
T Consensus         8 R~~~fIltGgpGaGKTtLL~aLa~~-Gfa   35 (183)
T COG3911           8 RHKRFILTGGPGAGKTTLLAALARA-GFA   35 (183)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHc-Cce
Confidence            4457889999999999999999764 443

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.69  E-value=0.0097  Score=48.95  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+|.||||+||||+...+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            57789999999997666665554

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=95.69  E-value=0.015  Score=48.79  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~   95 (219)
                      .++..+.|.|+||+|||++|..++...     .+.+++.+
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            467889999999999999999998743     34555554

>cd01862 Rab7 Rab7 subfamily

Probab=95.68  E-value=0.0097  Score=46.84  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +|+++|++||||||+..++...
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.67  E-value=0.011  Score=49.05  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56678999999999999999998543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.67  E-value=0.011  Score=48.83  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            56679999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd00879 Sar1 Sar1 subfamily

Probab=95.66  E-value=0.012  Score=47.58  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|++||||||+..++..
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4567889999999999999999975

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.66  E-value=0.011  Score=50.73  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      .++-.++++||+||||||+.+-|-
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHH
Confidence            356678999999999999999875

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=95.66  E-value=0.09  Score=43.20  Aligned_cols=132  Identities=14%  Similarity=0.038  Sum_probs=68.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhHHhhcCC-CchhHHH-HHH--HHHcCC-ccc---HHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSP-RSALYKQ-IAN--AVNEGK-LVP---EDVIFALL  131 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dllr~~~~~-~s~lg~~-i~~--~l~~g~-~ip---~e~i~~Ll  131 (219)
                      ++.+|++-|.|-+|||++|..|.+...-  .||-+|.++ +.+++ .-..+.- ..+  ...+|+ +++   ..+....+
T Consensus        22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~-e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~  100 (205)
T COG3896          22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFW-EALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAM  100 (205)
T ss_pred             CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHH-HhCCHHhhccccccccccccccCCceeeEeechhHHHHHH
Confidence            5678889999999999999999887744  556664443 33332 1111000 000  001111 111   11221111


Q ss_pred             ---HHHHHhccccCCCeEEEeCccCCHHHH-HHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCc
Q 027791          132 ---SKRLEEGYYRGESGFILDGIPRTRIQA-VSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCN  203 (219)
Q Consensus       132 ---~~~l~~~~~~~~~g~IlDG~Pr~~~qa-~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~  203 (219)
                         ...|... ...+..+|.|.+--+.... +.+..+ ..+...|-+.||+|+.       ++|-..| -.-+-|-|
T Consensus       101 ~~~r~ai~a~-ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~-------~~Re~rr-~dR~pG~~  168 (205)
T COG3896         101 HSRRRAIRAY-ADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEG-------ARRELRR-GDRHPGWN  168 (205)
T ss_pred             HHHHHHHHHH-hccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHH-------HHHHhhc-CCcCcchh
Confidence               2222222 1235568888765443332 222222 2355788899999999       8877654 34444443

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.65  E-value=0.01  Score=50.09  Aligned_cols=27  Identities=33%  Similarity=0.382  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            356789999999999999999998543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd01895 EngA2 EngA2 subfamily

Probab=95.65  E-value=0.011  Score=46.06  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +.+|+++|.+|+||||+..+|...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc
Confidence            578999999999999999999764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=95.65  E-value=0.011  Score=45.98  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +|+++|+||+||||+..++..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999874

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.64  E-value=0.012  Score=48.91  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.64  E-value=0.11  Score=52.48  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .+.-++|.|++|+||||+++.|++.+++.
T Consensus        36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         36 INHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            34558999999999999999999999874

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.64  E-value=0.012  Score=49.03  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56679999999999999999998643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=95.63  E-value=0.0092  Score=51.50  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~   95 (219)
                      ++-.++|.|+||||||+++.+++...   |  +.+|+++
T Consensus        22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~   60 (260)
T COG0467          22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE   60 (260)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            66778899999999999999988754   3  4455553

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.63  E-value=0.011  Score=49.90  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56679999999999999999998643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.62  E-value=0.012  Score=49.89  Aligned_cols=27  Identities=30%  Similarity=0.350  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            356789999999999999999998543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08116 hypothetical protein; Validated

Probab=95.62  E-value=0.011  Score=51.83  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CC--CeeccchhHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR   99 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~--~~Is~~dllr   99 (219)
                      .-++|.|+||+|||.++..++..+   +.  .+++..+++.
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~  155 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN  155 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            348899999999999999999975   44  3445555554

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.62  E-value=0.012  Score=49.18  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            366789999999999999999998543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.62  E-value=0.012  Score=47.74  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|+.||||||+.+.|+-.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.61  E-value=0.012  Score=49.19  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56689999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.61  E-value=0.012  Score=49.15  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55679999999999999999998643

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.60  E-value=0.013  Score=51.32  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++|+|+||+||||+++.+++.+.
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            479999999999999999999873

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=95.60  E-value=0.014  Score=45.57  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+++|+||+||||+..++...
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~   25 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQS   25 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Confidence            368999999999999999988754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.60  E-value=0.012  Score=48.78  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd04177 RSR1 RSR1 subgroup

Probab=95.60  E-value=0.012  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+++|.||+||||+.+++...
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999753

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.60  E-value=0.014  Score=47.28  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+.|+|++||||||++++|...+
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999987

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.59  E-value=0.013  Score=47.60  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            55679999999999999999998643

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=95.59  E-value=0.014  Score=59.02  Aligned_cols=42  Identities=31%  Similarity=0.497  Sum_probs=32.4

Q ss_pred             CCCCCe-EEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791           59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (219)
Q Consensus        59 ~~~~~~-~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~  100 (219)
                      .|.+|. .++|.||||+|||.+|+.||+.+     .+..+++.++...
T Consensus       591 ~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~  638 (852)
T TIGR03345       591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA  638 (852)
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence            455666 47899999999999999999988     3456777665544

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=95.58  E-value=0.013  Score=49.19  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH----cCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL----LEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~----lg~~~Is~   94 (219)
                      ...|-|.||||||||++...+.+.    |.+-+|.-
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~   48 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG   48 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence            378899999999999997776554    56666643

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.58  E-value=0.012  Score=48.87  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++-+|.++||+||||||+-+.+|.-
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhc
Confidence            45667999999999999999999864

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.58  E-value=0.014  Score=51.91  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVR   99 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr   99 (219)
                      ...|+|.|++||||||+.+.|...+     +..++.+.|-.+
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E  173 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE  173 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence            3578899999999999999999876     345566655433

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=95.58  E-value=0.012  Score=52.74  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..++|.||||+|||++++.+.+.+
T Consensus        39 ~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        39 RPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            44568999999999999999998765

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.57  E-value=0.012  Score=49.55  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.57  E-value=0.013  Score=48.28  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-++.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998754

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=95.57  E-value=0.016  Score=48.82  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++..+.|.|+||||||+++..++..
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46788899999999999999999854

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.56  E-value=0.012  Score=49.80  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            55679999999999999999998543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=95.56  E-value=0.012  Score=59.13  Aligned_cols=39  Identities=21%  Similarity=0.434  Sum_probs=29.3

Q ss_pred             CCCCCe-EEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchh
Q 027791           59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSL   97 (219)
Q Consensus        59 ~~~~~~-~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dl   97 (219)
                      .+.+|. .++|.||+|+|||++|+.||+.+     .+..++++++
T Consensus       534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~  578 (821)
T CHL00095        534 NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY  578 (821)
T ss_pred             CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence            345564 47899999999999999999987     2445555554

>COG4240 Predicted kinase [General function prediction only]

Probab=95.56  E-value=0.014  Score=50.58  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---C---CCeeccchhHHhh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E---VPHISMGSLVRQE  101 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g---~~~Is~~dllr~~  101 (219)
                      .+|.++.|.||-||||||++..|-..+   |   ...+|.||++..+
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth   94 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH   94 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence            568999999999999999998776544   3   4566788876544

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.56  E-value=0.014  Score=50.70  Aligned_cols=30  Identities=10%  Similarity=0.273  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .++-++.|+|++|+||||+++.+...+...
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            477889999999999999999999877543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.012  Score=58.37  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc--hhHHhhc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQEL  102 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~--dllr~~~  102 (219)
                      .--|+++||||+|||-+|+++|.++++.++|+.  +|+....
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV  746 (953)
T KOG0736|consen  705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV  746 (953)
T ss_pred             cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence            445999999999999999999999999998873  4555443

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.54  E-value=0.012  Score=49.18  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.54  E-value=0.013  Score=49.77  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56679999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.53  E-value=0.012  Score=49.18  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55679999999999999999998643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=95.53  E-value=0.012  Score=47.32  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +.|+|++||||||++.+|.+.+
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.53  E-value=0.012  Score=48.96  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            56679999999999999999998653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.52  E-value=0.015  Score=50.30  Aligned_cols=34  Identities=12%  Similarity=0.158  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccch
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGS   96 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~d   96 (219)
                      ...|+|.|++||||||+...+.+.+.   ..++.+.|
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd  163 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED  163 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred             ceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence            57899999999999999999998773   34455544

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.52  E-value=0.012  Score=53.30  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      .+-+++|+||+||||||+.+.||   |+.-++.|+
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~   59 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGE   59 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence            45578999999999999999998   444444333

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.52  E-value=0.014  Score=49.12  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            56789999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.52  E-value=0.013  Score=49.50  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998653

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=95.51  E-value=0.015  Score=46.37  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+|+++|++|+||||+..++..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999864

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=95.51  E-value=0.012  Score=51.18  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ...+.+++.||||.||||....||.++
T Consensus        46 gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   46 GNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            345678999999999999999999987

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=95.51  E-value=0.014  Score=46.77  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.||+||||+..++...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999753

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=95.50  E-value=0.017  Score=51.48  Aligned_cols=29  Identities=21%  Similarity=0.264  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .+..++|.||||+||||+++.+++.+...
T Consensus        35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~   63 (355)
T TIGR02397        35 IAHAYLFSGPRGTGKTSIARIFAKALNCQ   63 (355)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            44678999999999999999999998654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.50  E-value=0.014  Score=49.86  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356779999999999999999998543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.50  E-value=0.014  Score=48.86  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56678999999999999999998643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.50  E-value=0.015  Score=47.23  Aligned_cols=25  Identities=16%  Similarity=0.405  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+++|++||||||+...|..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~   36 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN   36 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh
Confidence            5778999999999999999999974

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.50  E-value=0.013  Score=48.17  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .++-.+.|+|++||||||+.+.|+-
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.49  E-value=0.014  Score=49.22  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|++||||||+.+.|+-.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5668999999999999999999864

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.49  E-value=0.015  Score=46.94  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-++.|+|+.||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356689999999999999999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.49  E-value=0.014  Score=47.11  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56679999999999999999998643

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.49  E-value=0.014  Score=49.14  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-++.|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.48  E-value=0.014  Score=49.49  Aligned_cols=26  Identities=15%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++-.+.|+|+.||||||+.+.|+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999865

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.47  E-value=0.014  Score=49.43  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            56789999999999999999998543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=95.47  E-value=0.016  Score=45.85  Aligned_cols=24  Identities=33%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|+||+||||+..++...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            468999999999999999999753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.47  E-value=0.015  Score=46.88  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+.+.|+-.+
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            356789999999999999999998654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.46  E-value=0.014  Score=49.71  Aligned_cols=26  Identities=19%  Similarity=0.496  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55679999999999999999998654

>cd01860 Rab5_related Rab5-related subfamily

Probab=95.46  E-value=0.014  Score=45.54  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+++|++|+||||+..++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999999764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.46  E-value=0.016  Score=46.93  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            56689999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.45  E-value=0.015  Score=48.08  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-++.|.|++||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            366789999999999999999998654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.45  E-value=0.014  Score=49.12  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.45  E-value=0.015  Score=49.49  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56779999999999999999998543

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.45  E-value=0.015  Score=47.48  Aligned_cols=26  Identities=23%  Similarity=0.110  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45678999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.44  E-value=0.014  Score=49.96  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-++.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.44  E-value=0.015  Score=48.10  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+.+.|+-.+
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            366789999999999999999998644

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PTZ00035 Rad51 protein; Provisional

Probab=95.44  E-value=0.063  Score=48.62  Aligned_cols=26  Identities=19%  Similarity=0.141  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+-.+.|+|+|||||||++..++-.
T Consensus       116 ~~G~iteI~G~~GsGKT~l~~~l~~~  141 (337)
T PTZ00035        116 ETGSITELFGEFRTGKTQLCHTLCVT  141 (337)
T ss_pred             CCCeEEEEECCCCCchhHHHHHHHHH
Confidence            36778889999999999999999753

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.43  E-value=0.015  Score=48.13  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+.||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            56789999999999999999998543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.42  E-value=0.017  Score=52.80  Aligned_cols=29  Identities=17%  Similarity=0.153  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .+|..|-|+|++||||||+++.|.+++.-
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~   31 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSE   31 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            47888999999999999999999988853

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.42  E-value=0.015  Score=49.68  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            56789999999999999999998654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.42  E-value=0.017  Score=51.29  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+...+-|+|+|||||||+.+.+...+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456788899999999999999888775

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.42  E-value=0.015  Score=49.21  Aligned_cols=27  Identities=22%  Similarity=0.447  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+.+.|+-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

>PHA03133 thymidine kinase; Provisional

Probab=95.42  E-value=0.48  Score=43.40  Aligned_cols=29  Identities=21%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ..-.+|.|.|+.|.||||.++.+.+..+.
T Consensus        38 ~~~~rvYlDG~~GvGKTTt~~~l~~a~~~   66 (368)
T PHA03133         38 SALLRIYVDGPHGLGKTTTAAALAAALGR   66 (368)
T ss_pred             ceEEEEEEeCCCcCCHHHHHHHHHHhhCC
Confidence            35678999999999999999888887753

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.41  E-value=0.016  Score=47.13  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+.+.|+-.+
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.41  E-value=0.017  Score=58.46  Aligned_cols=41  Identities=22%  Similarity=0.550  Sum_probs=29.8

Q ss_pred             CCCCCe-EEEEEcCCCCChHHHHHHHHHHc---C--CCeeccchhHH
Q 027791           59 PPRRGV-QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVR   99 (219)
Q Consensus        59 ~~~~~~-~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~dllr   99 (219)
                      .|.+|. .++|+||+|+|||++|+.|++.+   +  +..+++.++..
T Consensus       593 ~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~  639 (857)
T PRK10865        593 DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME  639 (857)
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence            344554 57899999999999999999876   2  34456655543

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.40  E-value=0.015  Score=48.80  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            55679999999999999999998654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.40  E-value=0.016  Score=49.81  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .++-.+.|+||+||||||+-..|+-
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3566899999999999999999874

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.39  E-value=0.015  Score=48.94  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            56689999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.39  E-value=0.015  Score=50.07  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            366789999999999999999998754

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.39  E-value=0.015  Score=49.73  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            356689999999999999999998643

>PRK05642 DNA replication initiation factor; Validated

Probab=95.38  E-value=0.016  Score=49.62  Aligned_cols=36  Identities=14%  Similarity=0.109  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH-----cCCCeeccchhHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL-----LEVPHISMGSLVR   99 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~-----lg~~~Is~~dllr   99 (219)
                      ..++|.|++|+|||.+++.++.+     ..+.+++.++++.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD   86 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence            45789999999999999998764     3567778877664

>cd01864 Rab19 Rab19 subfamily

Probab=95.37  E-value=0.017  Score=45.54  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+|+|+|++|+||||+..++..
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999999853

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.37  E-value=0.017  Score=46.48  Aligned_cols=26  Identities=38%  Similarity=0.537  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++-.+.|+|+.||||||+.+.|+-.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.36  E-value=0.016  Score=48.91  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            56789999999999999999998644

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.36  E-value=0.016  Score=49.51  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|++||||||+.+.|+-.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5678999999999999999999953

>PRK10908 cell division protein FtsE; Provisional

Probab=95.36  E-value=0.017  Score=48.49  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            366789999999999999999998544

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.36  E-value=0.016  Score=49.02  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|++||||||+.+.|+-.+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55678999999999999999998654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.35  E-value=0.016  Score=50.00  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+.+.|+-.+
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            356789999999999999999998654

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.35  E-value=0.015  Score=57.02  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      -+.-++|+|++|+||||+++.|++.+++.
T Consensus        37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         37 LHHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            34558999999999999999999999884

>cd03114 ArgK-like The function of this protein family is unkown

Probab=95.35  E-value=0.014  Score=46.43  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +.++|++||||||++..++..+
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~   23 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITAL   23 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            6789999999999999999876

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		2e-10
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		2e-10
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		3e-10
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		5e-10
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		8e-10
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		1e-09
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-09
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-09
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		2e-09
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		2e-09
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		3e-09
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-09
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-09
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		3e-09
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-09
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-09
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-09
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-09
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		1e-08
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		1e-08
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		3e-08
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		4e-08
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		4e-08
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		5e-08
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		1e-07
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		2e-07
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		2e-07
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		4e-07
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		4e-07
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		1e-06
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		1e-06
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		2e-06
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		2e-06
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		2e-06
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		9e-06
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		1e-05
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		3e-05
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		4e-05
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		7e-05
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		1e-04
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		1e-04
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		3e-04

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   A+ + +  E+PHIS G + R  +   + L  +  + +++G LVP++V
Sbjct: 4   VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYT 166
              ++ +RL +     + GF+LDG PRT  QA +L+   T
Sbjct: 64  TIGIVHERLSKDDC--QKGFLLDGFPRTVAQADALDSLLT 101

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K   A+ +     +PHIS G + R  +   + L  Q    ++ G LVP
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVII 183
           ++V   ++ +RL +     ++GF+LDG PRT  QA +LE   TM         Y   + +
Sbjct: 61  DEVTIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALE---TMLADIGRKLDYVIHIDV 115
Query: 184 GSVILNEQVDG-SLCLTC 200
              +L E++ G  +C  C
Sbjct: 116 RQDVLMERLTGRRICRNC 133

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           +GV+ VL+G PG  K   A  L+K   V H++ G ++R  ++  S L K++   ++ GKL
Sbjct: 15  KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           V ++++  L+ K LE    +  +GF+LDG PRT  QA  L+
Sbjct: 75  VSDEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQAEMLD 113

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 56  AGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ-IAN 114
           A SP +  V +VL G PG  K    + L K     H+S G L+R E     + Y + I N
Sbjct: 9   AFSPDQVSVIFVL-GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKN 67
Query: 115 AVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFL 174
            + EG++VP+++  ALL   + +     +  F++DG PR   QA+S E     +   LF 
Sbjct: 68  CIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF 127

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           +G++ VL+G PG  K   A  L++   V H++ G ++R  ++  S L K++   ++ GKL
Sbjct: 15  KGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           V ++++  L+ K LE    +  +GF+LDG PRT  QA  L+
Sbjct: 75  VSDEMVVELIEKNLETPLCK--NGFLLDGFPRTVRQAEMLD 113

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   AD + +    PHIS G + R  +   + L  +  + +++G LVP++V
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              ++ +RL +     ++GF+LDG PRT  QA +L+
Sbjct: 64  TIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALD 97

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   A+ + +   +PHIS G + R  +   + L  +  + +++G+LVP++V
Sbjct: 4   VLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
              ++ +RL +     E GF+LDG PRT  Q
Sbjct: 64  TIGIVRERLSKSDC--ERGFLLDGFPRTVAQ 92

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           ++++ AL+ +R+ +   R  +GF+LDG PRT  QA +++
Sbjct: 61  DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMK 97

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV 
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           ++++ AL+ +R+ +   R  +GF+LDG PRT  QA +++
Sbjct: 61  DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMK 97

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           +++ +G PG  K   + NL K     H+S G L+R+    ++ L  +I N +NEGKLV +
Sbjct: 31  RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
            ++ +L+ ++L+    + + GFILDG PR   QA  L
Sbjct: 91  QMVLSLVDEKLKTP--QCKKGFILDGYPRNVKQAEDL 125

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           +  VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQ 157
           ++V   ++ +RL  G    E GF+LDG PRT  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +D++  ++   L       ++GFILDG PRT  QA  L+
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLD 102

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +D++  ++   L       ++GFILDG PRT  QA  L+
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLD 102

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 65  QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE 124
           + +L+G PG  K   A+ + +   +P IS G  +R  +   + L  +     +EGKLVP+
Sbjct: 10  RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQA 158
            +I  L+ +RL+E      +G++ DG PRT  QA
Sbjct: 70  SLIIGLVKERLKEADC--ANGYLFDGFPRTIAQA 101

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G P   K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV 
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           ++++ AL+ +R+ +   R  +GF+LDG PRT  QA +++
Sbjct: 61  DELVIALVKERIAQEDCR--NGFLLDGFPRTIPQADAMK 97

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP
Sbjct: 21  MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 80
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
            D+   L+  RL        +GFILDG PR+  QA +L
Sbjct: 81  SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKAL 116

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
            D+   L+  RL        +GFILDG PR+  QA +L
Sbjct: 61  SDLTNELVDDRLNN--PDAANGFILDGYPRSVEQAKAL 96

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ ++ G P   K    + +    ++ HIS G L+R E++  S   K+    + +G+LVP
Sbjct: 6   LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 65
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFL 174
           ++++  ++ +RL +   + E+G++LDG PR+  QA++LE        F+ L
Sbjct: 66  DEIVVNMVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALETLEIRPDTFILL 115

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 124 EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +D++  ++   L       ++GFIL G PRT  QA  L+
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLD 102

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V +G PG  K   A  L+K     HIS G ++R+ +   + L K+    +  G+LVP+D+
Sbjct: 4   VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           I AL+     E  +      I DG PRT  QA +L+
Sbjct: 64  IIALI-----EEVFPKHGNVIFDGFPRTVKQAEALD 94

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 89  VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFIL 148
           +P IS G ++R  +   S L KQ  + ++ GKLV ++++ AL+ +R+ +   R  +GF+L
Sbjct: 26  IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR--NGFLL 83
Query: 149 DGIPRTRIQAVSLE 162
           DG PRT  QA +++
Sbjct: 84  DGFPRTIPQADAMK 97

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           R ++  ++G PG  K   +  ++K  E+ H+S G L+R  +   + +       +++GKL
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTM 167
           +P+DV+  L+   L E     +  ++LDG PRT  QA +L+  Y +
Sbjct: 65  IPDDVMTRLV---LHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI 107

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           ++ G  G  K    + +     + HI  G + R+ +   + L K+    ++ G LVP+D+
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
              ++ + LE    +G+ G++LDG PR  +QA  L
Sbjct: 64  TIPMVLETLES---KGKDGWLLDGFPRNTVQAQKL 95

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           ++ G  G  K    + +     + HI  G + R+ +   + L K+    ++ G LVP+D+
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
              ++ + LE    +G+ G++LDG PR  +QA  L
Sbjct: 64  TIPMVLETLES---KGKDGWLLDGFPRNTVQAQKL 95

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANA-VNEGK 120
           R ++ V++G PG  K   +  ++   E+ H+S G L+R  +  R      +A A +++GK
Sbjct: 6   RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML-RGTEIGVLAKAFIDQGK 64
Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTM 167
           L+P+DV+  L    L E     +  ++LDG PRT  QA +L+  Y +
Sbjct: 65  LIPDDVMTRLA---LHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI 108

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           +IG PG  K    + L +     H+S G L+R+EL+  S   K I + +  G LVP  ++
Sbjct: 17  IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 128 FALLSKRLEEGYYRGES-GFILDGIPR 153
             LL + +      G++ GF++DG PR
Sbjct: 77  LELLKEAMVASL--GDTRGFLIDGYPR 101

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 63  GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV 122
           G   + +G PG  K   A  L++ L    +S G ++R  ++  + L +++   +  G LV
Sbjct: 4   GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 123 PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           P+D+I  L+ + L E         I DG PRT  QA +L+
Sbjct: 64  PDDLILELIREELAE-------RVIFDGFPRTLAQAEALD 96

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +LIG PG  K    + + K   + H+S G ++R+ +   + +  +  + +  G  V +++
Sbjct: 9   ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
           +  L+ ++ + G     +GF+LDG PRT  QA  L
Sbjct: 69  VLGLVKEKFDLGVCV--NGFVLDGFPRTIPQAEGL 101

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + + +     H+S G L+R E+S  SA  K+++  + +G+LVP + +
Sbjct: 14  VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             +L   +         GF++DG PR   Q    E
Sbjct: 74  LDMLRDAM-VAKVNTSKGFLIDGYPREVQQGEEFE 107

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + L +     H+S G L+R E+   S   K++   +  G+LVP +V+
Sbjct: 34  VLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV 93
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
            ALL + + +   +    F++DG PR   Q +  E
Sbjct: 94  LALLKEAMIKLVDKN-CHFLIDGYPRELDQGIKFE 127

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K    + + +     H+S G L+R E+S  SA  K ++  + +G+LVP + +
Sbjct: 14  VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETV 73
Query: 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
             +L   +         GF++DG PR   Q    E
Sbjct: 74  LDMLRDAM-VAKVDTSKGFLIDGYPREVKQGEEFE 107

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V++G PG  K      +++   + H+S G  +R+ +   + + +     + +  LVP+ V
Sbjct: 31  VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           I  L+   LE    RG+  ++LDG PRT  QA +L+
Sbjct: 91  ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALD 123

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V++G PG  K      +++   + H+S G  +R+ +   + + +     + +  LVP+ V
Sbjct: 9   VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           I  L+   LE    RG+  ++LDG PRT  QA +L+
Sbjct: 69  ITRLMMSELEN--RRGQH-WLLDGFPRTLGQAEALD 101

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDV 126
           ++G PG  K      + +     H+S G L+R E  +P S   + I   + EGK+VP ++
Sbjct: 8   VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEI 67
Query: 127 IFALLSKRLEEGYYRG--ESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGC 179
             +LL + +++       ++ F++DG PR +                 F+  + C
Sbjct: 68  TISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 122

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI 127
           ++G PG  K     N+ +     H+S G L+RQE    S   + IA  +  G++VP  V 
Sbjct: 11  VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70
Query: 128 FALLSKRLEEGYYRGESGFILDGIPR 153
             LL   ++    +    F++DG PR
Sbjct: 71  VKLLKNAIDANQGK---NFLVDGFPR 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	2e-20
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	2e-20
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	2e-20
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	1e-19
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	1e-19
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	1e-19
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	1e-19
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	1e-19
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	4e-19
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	4e-19
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	4e-19
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	5e-19
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	6e-19
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	7e-19
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	7e-19
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	8e-19
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	1e-18
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	1e-18
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	2e-18
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	2e-18
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	7e-05

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 42  LHGQASEP-----MLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96
           +H                   S   + ++ V++G PG  K      +++   + H+S G 
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH 60

Query: 97  LVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRI 156
            +R+ +   + + +     + +  LVP+ VI  L+   LE    R    ++LDG PRT  
Sbjct: 61  FLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---RRGQHWLLDGFPRTLG 117

Query: 157 QAVSLE 162
           QA +L+
Sbjct: 118 QAEALD 123

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN 117
               R ++ V++G PG  K   +  ++   E+ H+S G L+R  +   + +       ++
Sbjct: 2   GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID 61

Query: 118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +GKL+P+DV+  L    L+      +  ++LDG PRT  QA +L+
Sbjct: 62  QGKLIPDDVMTRLALHELKN---LTQYSWLLDGFPRTLPQAEALD 103

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score = 84.2 bits (209), Expect = 2e-20
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPED 125
            ++G PG  K    + L K     H+S G L+R E     S   + I N + EG++VP++
Sbjct: 19  FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78

Query: 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  ALL   + +     +  F++DG PR   QA+S E
Sbjct: 79  ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFE 115

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score = 82.2 bits (204), Expect = 1e-19
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K     N+ +     H+S G L+RQE    S   + IA  +  G++VP  V
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              LL   ++         F++DG PR      S E
Sbjct: 70  TVKLLKNAIDAN---QGKNFLVDGFPRNEENNNSWE 102

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score = 83.0 bits (206), Expect = 1e-19
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN 117
                 ++ +L+G PG  K   A+ + +   +P IS G ++R  +   + L  +    ++
Sbjct: 3   HHHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD 62

Query: 118 EGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           EGKLVP+ +I  L+ +RL+E      +G++ DG PRT  QA +++
Sbjct: 63  EGKLVPDSLIIGLVKERLKEADCA--NGYLFDGFPRTIAQADAMK 105

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score = 81.8 bits (203), Expect = 1e-19
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           + +G PG  K   A  L++ L    +S G ++R  ++  + L +++   +  G LVP+D+
Sbjct: 8   IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL 67

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           I  L+ + L E         I DG PRT  QA +L+
Sbjct: 68  ILELIREELAE-------RVIFDGFPRTLAQAEALD 96

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score = 82.6 bits (205), Expect = 1e-19
 Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 49  PMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL 108
           P +          +GV+ VL+G PG  K   A  L+K   V H++ G ++R  ++  S L
Sbjct: 2   PNVPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSEL 61

Query: 109 YKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
            K++   ++ GKLV ++++  L+ K LE      ++GF+LDG PRT  QA  L+
Sbjct: 62  GKKLKATMDAGKLVSDEMVLELIEKNLETP--PCKNGFLLDGFPRTVRQAEMLD 113

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 52  RLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQ 111
           R      P  R   ++ +G PG  K   + NL K     H+S G L+R+    ++ L  +
Sbjct: 21  RYACLSKPDGR---YIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLK 77

Query: 112 IANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           I N +NEGKLV + ++ +L+ ++L+    + + GFILDG PR   QA  L 
Sbjct: 78  IKNIINEGKLVDDQMVLSLVDEKLKTP--QCKKGFILDGYPRNVKQAEDLN 126

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score = 81.0 bits (201), Expect = 4e-19
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +LIG PG  K    + + K   + H+S G ++R+ +   + +  +  + +  G  V +++
Sbjct: 9   ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  L+ ++ + G     +GF+LDG PRT  QA  L 
Sbjct: 69  VLGLVKEKFDLG--VCVNGFVLDGFPRTIPQAEGLA 102

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score = 80.7 bits (200), Expect = 4e-19
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           V +G PG  K   A  L+K     HIS G ++R+ +   + L K+    +  G+LVP+D+
Sbjct: 4   VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           I AL+ +   +         I DG PRT  QA +L+
Sbjct: 64  IIALIEEVFPK-----HGNVIFDGFPRTVKQAEALD 94

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score = 80.7 bits (200), Expect = 4e-19
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP D+
Sbjct: 24  LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 83

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              L+  RL        +GFILDG PR+  QA +L 
Sbjct: 84  TNELVDDRLNNP--DAANGFILDGYPRSVEQAKALH 117

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score = 80.7 bits (200), Expect = 5e-19
 Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   A+ + +  E+PHIS G + R  +   + L  +  + +++G LVP++V
Sbjct: 4   VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              ++ +RL +   +   GF+LDG PRT  QA +L+
Sbjct: 64  TIGIVHERLSKDDCQK--GFLLDGFPRTVAQADALD 97

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score = 80.3 bits (199), Expect = 6e-19
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPED 125
            ++G PG  K      + +     H+S G L+R E  +P S   + I   + EGK+VP +
Sbjct: 7   FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 66

Query: 126 VIFALLSKRLEEGYY--RGESGFILDGIPRTRIQAVSLE 162
           +  +LL + +++       ++ F++DG PR +       
Sbjct: 67  ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWN 105

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score = 79.9 bits (198), Expect = 7e-19
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            +IG PG  K    + L +     H+S G L+R+EL+  S   K I + +  G LVP  +
Sbjct: 16  FIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGI 75

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  LL + +         GF++DG PR   Q     
Sbjct: 76  VLELLKEAMVAS-LGDTRGFLIDGYPREVKQGEEFG 110

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score = 80.3 bits (199), Expect = 7e-19
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K    + + +   +PHIS G + R  +   + L  +  + +++G+LVP++V
Sbjct: 4   VLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              ++ +RL +       GF+LDG PRT  QA +LE
Sbjct: 64  TIGIVKERLGKDDCER--GFLLDGFPRTVAQAEALE 97

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score = 80.3 bits (199), Expect = 8e-19
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G P   K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV +++
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           + AL+ +R+ +      +GF+LDG PRT  QA +++
Sbjct: 64  VIALVKERIAQ--EDCRNGFLLDGFPRTIPQADAMK 97

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score = 79.9 bits (198), Expect = 1e-18
 Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
              ++ ++ G P   K    + +    ++ HIS G L+R E++  S   K+    + +G+
Sbjct: 3   ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 62

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           LVP++++  ++ +RL +   + E+G++LDG PR+  QA++LE
Sbjct: 63  LVPDEIVVNMVKERLRQPDAQ-ENGWLLDGYPRSYSQAMALE 103

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score = 79.6 bits (197), Expect = 1e-18
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           ++ G  G  K    + +     + HI  G + R+ +   + L K+    ++ G LVP+D+
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
              ++ + LE    +G+ G++LDG PR  +QA  L 
Sbjct: 64  TIPMVLETLES---KGKDGWLLDGFPRNTVQAQKLF 96

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K    + + +     H+S G L+R E+S  SA  K+++  + +G+LVP + 
Sbjct: 13  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  +L   +         GF++DG PR   Q    E
Sbjct: 73  VLDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFE 107

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score = 79.5 bits (197), Expect = 2e-18
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)

Query: 61  RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK 120
              ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G 
Sbjct: 2   SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61

Query: 121 LVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           LV +D++  ++   L       ++GFILDG PRT  QA  L+
Sbjct: 62  LVSDDIMVNMIKDELTNNPAC-KNGFILDGFPRTIPQAEKLD 102

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 68  LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDV 126
           + G PG  K  +A  L +      I M  +VR+  S  +   +++ +      ++  + V
Sbjct: 6   ITGMPGSGKSEFAKLLKER-GAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGV 64

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLE 162
           +  L  + L           + DG+ R+  +    +
Sbjct: 65  VARLCVEELGT---SNHDLVVFDGV-RSLAEVEEFK 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.97
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.97
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.95
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.94
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.94
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.94
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.93
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.93
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.92
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.92
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.91
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.9
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.86
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.86
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.85
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.85
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.83
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.83
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.82
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.75
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.66
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.57
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.54
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.51
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.48
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.46
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.46
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.46
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.44
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.44
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.43
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.4
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.4
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.4
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.39
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.38
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.38
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.38
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.38
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.37
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.37
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.37
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.36
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.36
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.34
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.34
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.32
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.3
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.29
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.29
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.29
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.28
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.27
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.27
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.27
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.27
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.27
1via_A	175	Shikimate kinase; structural genomics, transferase	99.26
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.21
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.2
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.19
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.19
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.15
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.14
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.13
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.12
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.11
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.11
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.1
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.08
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.07
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.06
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.04
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.0
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.98
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.97
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.9
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.9
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.89
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.89
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.84
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.82
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.8
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.8
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.76
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.75
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.72
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.66
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.58
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.58
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.52
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.5
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.48
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.45
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.42
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.39
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.39
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.38
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.37
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.34
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.28
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.21
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.18
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.18
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.14
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.13
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.11
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.03
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.0
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.94
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.89
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.77
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.76
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.74
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.71
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.67
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.64
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.6
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	97.6
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.55
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.52
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.52
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.5
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.49
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.48
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.46
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.45
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.44
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.43
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.41
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.41
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.39
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.39
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.37
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.36
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.35
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.34
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.34
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.33
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.33
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.33
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.3
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.3
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.3
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.28
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.24
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.2
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.19
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.18
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.17
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.16
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.14
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.13
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.12
3bos_A	242	Putative DNA replication factor; P-loop containing	97.11
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.1
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.08
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.07
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.07
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.04
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.02
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.01
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.99
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.99
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.96
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.93
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.91
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	96.91
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.91
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.85
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.84
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.82
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.8
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.79
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.77
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.77
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.76
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.75
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.75
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.72
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.71
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.7
3pvs_A	447	Replication-associated recombination protein A; ma	96.66
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.66
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.64
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.64
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.64
3co5_A	143	Putative two-component system transcriptional RES	96.64
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.63
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.61
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.6
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.59
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.58
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.57
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.57
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.56
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.55
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.54
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.54
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.51
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.48
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.48
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.46
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.43
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.42
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.41
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.4
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.4
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.39
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.39
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.36
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.34
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.32
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.32
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.31
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.29
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.28
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.28
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.27
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.27
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.25
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.24
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.23
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.23
2qgz_A	308	Helicase loader, putative primosome component; str	96.21
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.2
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.2
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.19
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.18
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.17
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.17
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.15
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.15
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.14
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.12
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.12
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.11
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.11
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.1
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.09
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.08
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.07
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.07
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.03
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.01
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.01
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.01
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.99
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.99
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.97
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.96
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.94
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.94
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.92
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.9
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.89
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.88
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.88
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.87
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.87
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.87
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.87
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	95.86
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.84
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.84
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.84
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.84
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.83
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.83
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.82
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.81
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.81
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.8
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.8
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.8
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.79
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.79
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.78
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.77
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.76
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.76
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.75
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.75
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.74
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.74
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.73
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.72
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.71
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.71
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.7
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.69
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.66
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.66
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.65
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.62
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.61
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.61
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.6
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.58
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.58
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.57
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.57
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.56
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.56
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.54
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.54
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.53
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.52
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.51
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.51
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.51
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.49
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.48
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.46
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.46
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.46
2og2_A	359	Putative signal recognition particle receptor; nuc	95.45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.45
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.43
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.43
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.42
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.41
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.41
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.41
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.41
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.4
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.4
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.39
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.39
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.38
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.38
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.37
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.37
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.35
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.35
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.35
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.34
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.34
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.34
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.33
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.33
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.3
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.29
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.29
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.29
1g6h_A	257	High-affinity branched-chain amino acid transport	95.29
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.29
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.29
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.29
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.28
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.27
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.26
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.26
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.25
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.25
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.25
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.23
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.23
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.2
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.19
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.19
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.18
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.17
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.17
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.16
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.16
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.14
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.14
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.11
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.09
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.03
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.01
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.01
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.01
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.0
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.99
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.98
2fna_A	357	Conserved hypothetical protein; structural genomic	94.98
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.96
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.94
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.93
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.9
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.89
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.88
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.88
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.88
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.86
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.79
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.79
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.79
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.78
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.76
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.74
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.74
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.73
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.71
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.7
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.7
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.7
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.69
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.68
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.67
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.64
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.64
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.63
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.62
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.58
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.47
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.43
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.43
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.42
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.39
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.38
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.37
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.35
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.32
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.29
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.24
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.18
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.15
2xxa_A	433	Signal recognition particle protein; protein trans	94.14
3io5_A	333	Recombination and repair protein; storage dimer, i	94.13
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.12
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	94.07
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.06
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.02
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.97
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.92
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.92
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	93.91
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	93.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	93.87
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.86
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.83
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.75
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	93.72
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	93.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.66
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.66
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	93.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.57
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	93.55
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.53
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	93.51
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	93.51
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.6
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	93.48
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.47
1xp8_A	366	RECA protein, recombinase A; recombination, radior	93.47
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.46
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.45
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.42
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.41
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	93.41
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.36
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.33
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	93.31
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	93.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.26
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.17
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.09
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.07
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.02
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.96
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	92.88
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.87
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.86
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	92.8
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	92.8
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	92.79
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	92.65
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	92.64

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=4.4e-34  Score=239.15  Aligned_cols=140  Identities=25%  Similarity=0.324  Sum_probs=128.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|||||||+|+|++|+++||++|||++|++|+++..++++|+++++++++|+++|++++..++.+++.+     .
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~   75 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H   75 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence            68999999999999999999999999999999999999999999999999999999999999999999988754     3


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc--chhhhhhh
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL--CRKFLIKL  215 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~--~~~~~~~~  215 (219)
                      .+||+||||||..|++.|+..     ..++.||+|++|++++       ++|+.+|++|+.||+.||..  |.+||.+|
T Consensus        76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l-------~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l  147 (206)
T 3sr0_A           76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV-------IERLSGRRINPETGEVYHVKYNPPPPGVKV  147 (206)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTEEECTTTCCEEETTTBCCCTTCCC
T ss_pred             CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHH-------HHHHhCCccccCCCceeeeeccCCCCCcee
Confidence            589999999999999998653     3689999999999999       99999999999999999864  55666654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.97  E-value=4.9e-32  Score=230.53  Aligned_cols=146  Identities=22%  Similarity=0.335  Sum_probs=132.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      ..-|+..|+|+|||||||+|+.|+++||++||+++|++|++...++++|+.+++++.+|.++|++++..++.+++.+.. 
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~-   84 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD-   84 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG-
T ss_pred             ccccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc-
Confidence            3457899999999999999999999999999999999999999999999999999999999999999999999998754 


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------cchh
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW---------LCRK  210 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~---------~~~~  210 (219)
                       ..+|||+||||++..|++.|+.. ..+|.||+|++|++++       ++|+.+|++|+.||+.||.         .|..
T Consensus        85 -~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l-------~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~  156 (230)
T 3gmt_A           85 -CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEI-------IERMSGRRTHPASGRTYHVKFNPPKVEGKDDV  156 (230)
T ss_dssp             -GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHH-------HHHHHTEEEETTTTEEEETTTBCCSSTTBCTT
T ss_pred             -cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHH-------HHHHHcCCcccccCCcccccCCCCCccCcCCC
Confidence             35699999999999999999764 3689999999999999       9999999999999999985         4788


Q ss_pred             hhhhh
Q 027791          211 FLIKL  215 (219)
Q Consensus       211 ~~~~~  215 (219)
                      ||..|
T Consensus       157 ~g~~L  161 (230)
T 3gmt_A          157 TGEPL  161 (230)
T ss_dssp             TCCBC
T ss_pred             ccCcc
Confidence            88755

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.97  E-value=5.9e-30  Score=215.90  Aligned_cols=130  Identities=22%  Similarity=0.318  Sum_probs=117.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .++..|+|+|||||||+|+|+.|+++||++|||++|++|+++..++++|+.+++++++|+++|++++..++.+++.+.. 
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~-  105 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV-  105 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT-
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc-
Confidence            4667888999999999999999999999999999999999999999999999999999999999999999999997753 


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                      ....|||+|||||+..|++.|+.. ..++.||+|++|++++       .+|+.+|..|.
T Consensus       106 ~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~-------~~Rl~~R~~~~  157 (217)
T 3umf_A          106 DKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVM-------RKRLLKRAETS  157 (217)
T ss_dssp             TTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHSCC----
T ss_pred             ccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHH-------HHHHhcccccC
Confidence            246799999999999999999764 5789999999999999       99999998665

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.95  E-value=8.7e-28  Score=204.32  Aligned_cols=146  Identities=26%  Similarity=0.309  Sum_probs=132.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .++++|+|+|+|||||||+|+.|++++|++||++++++|+....+++.++.+++++.+|..++++++..++..++.... 
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~-  105 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ-  105 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc-
Confidence            3678999999999999999999999999999999999999999999999999999999999999999999998887653 


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW---------  206 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~---------  206 (219)
                       ...+||+||||++..|++.++..     ..||.||+|++|++++       ++|+.+|..|+.||+.||.         
T Consensus       106 -~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~  177 (243)
T 3tlx_A          106 -CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVL-------VNRISGRLIHKPSGRIYHKIFNPPKVPF  177 (243)
T ss_dssp             -GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTEEEETTTTEEEETTTBCCSSTT
T ss_pred             -ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHH-------HHHHHcCCCCcccCcccccccCCCcccC
Confidence             36799999999999999888653     3689999999999999       9999999999999999984         


Q ss_pred             cchhhhhhh
Q 027791          207 LCRKFLIKL  215 (219)
Q Consensus       207 ~~~~~~~~~  215 (219)
                      .|..||..|
T Consensus       178 ~~~~~~~~l  186 (243)
T 3tlx_A          178 RDDVTNEPL  186 (243)
T ss_dssp             BCTTTCCBC
T ss_pred             ccccccccc
Confidence            577777654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.94  E-value=3.5e-27  Score=195.25  Aligned_cols=143  Identities=27%  Similarity=0.455  Sum_probs=129.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+++.|++++|++++++++++++....+++.++.+.+++.+|..++++++..++.+++....  .+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~   78 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD--CE   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--cc
Confidence            5799999999999999999999999999999999999999999999999999999999999999999998887653  36


Q ss_pred             CeEEEeCccCCHHHHHHHHhhC-----CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------cch
Q 027791          144 SGFILDGIPRTRIQAVSLEFCY-----TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW---------LCR  209 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~-----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~---------~~~  209 (219)
                      .+||+||||++..|++.+....     .+|.+|+|++|++++       ++|+.+|++|+.||+.||.         .|.
T Consensus        79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~  151 (216)
T 3dl0_A           79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVL-------MERLTGRRICSVCGTTYHLVFNPPKTPGICD  151 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGH-------HHHHHTEEEETTTCCEEETTTBCCSSTTBCT
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHCCCcCCccCCccccccCCCcccCccc
Confidence            7899999999999988886542     589999999999999       9999999999999999986         477


Q ss_pred             hhhhhh
Q 027791          210 KFLIKL  215 (219)
Q Consensus       210 ~~~~~~  215 (219)
                      .||..|
T Consensus       152 ~~~~~l  157 (216)
T 3dl0_A          152 KDGGEL  157 (216)
T ss_dssp             TTCCBE
T ss_pred             cccccc
Confidence            777655

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.94  E-value=9.6e-27  Score=192.39  Aligned_cols=143  Identities=27%  Similarity=0.443  Sum_probs=128.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+++.|++++|++++++++++++....+++.++.+.+++.+|..++++++..++.+++....  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~   78 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999998887653  35


Q ss_pred             CeEEEeCccCCHHHHHHHHhhC-----CCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc---------cch
Q 027791          144 SGFILDGIPRTRIQAVSLEFCY-----TMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW---------LCR  209 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~-----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~---------~~~  209 (219)
                      .+||+||||++..|++.+....     .+|.+|+|++|++++       ++|+.+|++|+.||+.||.         .|.
T Consensus        79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~  151 (216)
T 3fb4_A           79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEEL-------MKRLTGRWICKTCGATYHTIFNPPAVEGICD  151 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHSEEEETTTCCEEETTTBCCSSTTBCT
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCCCCccCCccccccCCCCcccccc
Confidence            7899999999999988886532     489999999999999       9999999999999999986         466


Q ss_pred             hhhhhh
Q 027791          210 KFLIKL  215 (219)
Q Consensus       210 ~~~~~~  215 (219)
                      .||..|
T Consensus       152 ~~~~~l  157 (216)
T 3fb4_A          152 KDGGEL  157 (216)
T ss_dssp             TTCCBE
T ss_pred             cccCcc
Confidence            676654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=3.6e-26  Score=190.38  Aligned_cols=137  Identities=20%  Similarity=0.313  Sum_probs=121.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++++|+|+|+|||||||+++.|++++|++|+++|+++++..+.+++.++.+++++.+|..++++.+..++.+++...  .
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~   81 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG--V   81 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--T
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--c
Confidence            56899999999999999999999999999999999999988888899999999999999999999999998888763  2


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      .+.+||+||||++..|++.+...     ..||.+|+|++|++++       ++|+.+|..|+.||+.||..
T Consensus        82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~  145 (217)
T 3be4_A           82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEI-------IERISGRCTHPASGRIYHVK  145 (217)
T ss_dssp             TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHTEEECTTTCCEEETT
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCCCccccCccccc
Confidence            35789999999999888877632     3689999999999999       99999999999999988864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.93  E-value=3e-25  Score=185.92  Aligned_cols=142  Identities=22%  Similarity=0.387  Sum_probs=126.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.++.+++++.+|..++++++..++.+.+...  . +
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g   77 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K   77 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence            579999999999999999999999999999999999998888899999999999999999999999998888763  1 5


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCC-CCCcccc----------c
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT-CPCNTGW----------L  207 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~-~g~~~~~----------~  207 (219)
                      .+||+||||++..|++.+...     ..||.+|+|++|++++       ++|+.+|..|+. ||+.||.          .
T Consensus        78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~  150 (223)
T 2xb4_A           78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVA-------KNRIMGRRICKNNPNHPNNIFIDAIKPNGDV  150 (223)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTBCEESSCTTSCCBTTCGGGCCBTTB
T ss_pred             CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcccCCccccCCccccccCCCcccccc
Confidence            689999999999888888643     3689999999999999       999999999987 9999987          4


Q ss_pred             chhhhhhh
Q 027791          208 CRKFLIKL  215 (219)
Q Consensus       208 ~~~~~~~~  215 (219)
                      |..||..|
T Consensus       151 ~~~~~~~l  158 (223)
T 2xb4_A          151 CRVCGGAL  158 (223)
T ss_dssp             CTTTCCBE
T ss_pred             cccccccc
Confidence            77776543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.93  E-value=1.6e-25  Score=188.32  Aligned_cols=140  Identities=27%  Similarity=0.365  Sum_probs=124.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      .+.++++|+|+|+|||||||+++.|+++|+++|+++++++++....++++++.+++++..|..++++++..++.+++...
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~   91 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP   91 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            34567899999999999999999999999999999999999988888899999999999999999999999999888765


Q ss_pred             cccCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          139 YYRGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      .  .+.+||+||||++..|++.|++.     ..+|.+|+|+++++++       ++|+.+|..|+.||+.||..
T Consensus        92 ~--~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-------~~Rl~~R~~~~~~g~~y~~~  156 (233)
T 1ak2_A           92 P--CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL-------IRRITGRLIHPQSGRSYHEE  156 (233)
T ss_dssp             G--GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHTCEECTTTCCEEBTT
T ss_pred             c--ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCCcCCccCCccccc
Confidence            3  35689999999999988876543     3589999999999999       99999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.92  E-value=5.1e-25  Score=183.17  Aligned_cols=139  Identities=23%  Similarity=0.349  Sum_probs=122.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .++++|+|+|+|||||||+++.|+++++++++++|+++++..+.+++.++.+++++.+|..++++.+..++.+++.... 
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~-   80 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP-   80 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc-
Confidence            4678999999999999999999999999999999999999888889999999999999999999999999988886321 


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      ..+.+||+||||++..|++.++..     ..||.+|+|+++++++       ++|+.+|..|+.||..||..
T Consensus        81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-------~~R~~~r~~~~~~g~~y~~~  145 (220)
T 1aky_A           81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL-------VARITGRLIHPASGRSYHKI  145 (220)
T ss_dssp             GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHTEEECTTTCCEEETT
T ss_pred             ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHhCCCccCccCCccccc
Confidence            235689999999999888766532     3689999999999999       99999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.92  E-value=3.6e-25  Score=183.51  Aligned_cols=135  Identities=24%  Similarity=0.353  Sum_probs=120.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+++.|++++|++|+++++++++.+..+++.++.+++++.+|..++++++..++.+++.+..  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~   78 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR   78 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence            5799999999999999999999999999999999999888888899999999999999999999999988887642  24


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      .+||+||||++..|++.+... ..||.+|+|+++++++       ++|+.+|..|+.||+.||..
T Consensus        79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~-------~~R~~~R~~~~~~g~~~~~~  136 (214)
T 1e4v_A           79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELI-------VDRIVGRRVHAPSGRVYHVK  136 (214)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHTEEEETTTTEEEETT
T ss_pred             CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHCCcccCCcCCccccc
Confidence            689999999999998888654 4689999999999999       99999999999999887753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.91  E-value=7.6e-24  Score=177.02  Aligned_cols=136  Identities=22%  Similarity=0.333  Sum_probs=120.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .++++|+|+|+|||||||+++.|++++|++++++|++++.....++++++.+++++.+|..++++....++.+++.+.  
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--   82 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--   82 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence            356899999999999999999999999999999999999988788899999999999999999988888887777652  


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCcccc
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGW  206 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~  206 (219)
                       .+.+||+||||++..|++.++....+|.+|+|+++++++       ++|+.+|..|+.||+.|+.
T Consensus        83 -~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~-------~~R~~~R~~~~~~~~~y~~  140 (227)
T 1zd8_A           83 -TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVI-------KQRLTARWIHPASGRVYNI  140 (227)
T ss_dssp             -TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHH-------HHHHTCEEEETTTTEEEET
T ss_pred             -cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHH-------HHHHHcCcCCCccCCcccc
Confidence             246799999999999988887767789999999999999       9999999999989876653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.90  E-value=5.5e-24  Score=177.10  Aligned_cols=138  Identities=23%  Similarity=0.312  Sum_probs=120.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++++|+|+|+|||||||+++.|+++++++++++|++++.....+++.|+.+++++.+|..+|++.+..++.+++....+ 
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   82 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA-   82 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence            5678999999999999999999999999999999999997777888999999999999999999888888877765321 


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCccccc
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCNTGWL  207 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~  207 (219)
                      ...+||+||||++.++.+.+... ..||++|+|+++++++       ++|+.+|..|+.||+.|+..
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~-------~~R~~~r~~~~~~g~~~~~~  142 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELL-------VERVVGRRLDPVTGKIYHLK  142 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHH-------HHHHTTEEECTTTCCEEESS
T ss_pred             cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHH-------HHHHHcCCcccccCCccccc
Confidence            24689999999999888888754 3689999999999999       99999999999999977653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.86  E-value=1.4e-21  Score=159.93  Aligned_cols=127  Identities=28%  Similarity=0.412  Sum_probs=110.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      +.++++|+|+|+|||||||+++.|++++|++++++|+++++....+++.++.+++++.+|..++++....++.+++... 
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~-   95 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP-   95 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-
Confidence            4677899999999999999999999999999999999999987778889999999999999999988888888777653 


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                       ....+||+||+|++..+.+.+...     ..||.+|+|++|++++       ++|+.+|.
T Consensus        96 -~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~-------~~Rl~~R~  148 (201)
T 2cdn_A           96 -DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL-------LERLKGRG  148 (201)
T ss_dssp             -GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHHHC
T ss_pred             -cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-------HHHHHcCC
Confidence             235679999999999888776543     2489999999999999       99998873

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.86  E-value=5e-21  Score=156.50  Aligned_cols=129  Identities=26%  Similarity=0.423  Sum_probs=109.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc-CCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~-~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      +.+++.|+|+|+|||||||+++.|++++|++++++|+++++.. ..+++.++.+++++.+|...++++...++.+.+...
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            3567899999999999999999999999999999999999864 356778888999998999889888888887776543


Q ss_pred             cccCCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          139 YYRGESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+..+||+||+|++.+++..++... .+|.+|+|++|++++       ++|+.+|.
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~-------~~Rl~~R~  142 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIM-------LERLLERG  142 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHHHhcc
Confidence            222346899999999999888887543 589999999999999       99998774

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.85  E-value=8.6e-21  Score=153.43  Aligned_cols=126  Identities=22%  Similarity=0.330  Sum_probs=110.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +++.|+|+|+|||||||+++.|++++|++++++|++++.....+++.++.+++.+.+|+.++++.+..++.+.+.... .
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~   86 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV-N   86 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-c
Confidence            567899999999999999999999999999999999998877778899999999999999999888888887776543 2


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+.++|+||+|++..+.+.+... ..++.+|+|++|++++       .+|+.+|.
T Consensus        87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~-------~~R~~~R~  134 (196)
T 2c95_A           87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETM-------TQRLLKRG  134 (196)
T ss_dssp             TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHHHccC
Confidence            35789999999999888777543 4689999999999999       99998875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.85  E-value=1.3e-20  Score=152.70  Aligned_cols=127  Identities=25%  Similarity=0.367  Sum_probs=110.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +++.|+|+|+|||||||+++.|++++|++++++|++++.+...+++.++.+.+++.+|..++++.+..++.+.+.... .
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~   89 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G   89 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence            457899999999999999999999999999999999998876678889999999999999999988888887776542 2


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      .+.++|+||+|.+..+.+.+.... .+|.+|+|++|++++       .+|+.+|..
T Consensus        90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~-------~~R~~~R~~  138 (199)
T 2bwj_A           90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTM-------TNRLLQMSR  138 (199)
T ss_dssp             SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHTCC
T ss_pred             cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHH-------HHHHHcCCC
Confidence            357899999999998887776543 689999999999999       999998864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.83  E-value=1.5e-20  Score=151.28  Aligned_cols=120  Identities=25%  Similarity=0.403  Sum_probs=103.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +++.|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.++.+++++.+|...+++.+..++.+.+.     
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~-----   77 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA-----   77 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence            578899999999999999999999999999999999998877788899999999999999998887777665442     


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhC-----CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCY-----TMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~-----~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                        .++|+||+|++..+.+.++...     .+|.+|+|++|++++       ++|+.+|.
T Consensus        78 --~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~-------~~R~~~R~  127 (186)
T 3cm0_A           78 --ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEEL-------VRRILRRA  127 (186)
T ss_dssp             --SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred             --CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHhcc
Confidence              2499999999988876654321     378999999999999       99998774

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.83  E-value=6.3e-20  Score=147.38  Aligned_cols=124  Identities=23%  Similarity=0.329  Sum_probs=107.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .++.|+|+|+|||||||+++.|++++|++++++|++++++...+++.++.+.+++.+|...+++....++...+...   
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~---   81 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN---   81 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence            45689999999999999999999999999999999999887677888999999999999889888888888777653   


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+.++|+||+|++..+.+.+...    ..+|.+|+|++|++++       ++|+.+|.
T Consensus        82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~-------~~R~~~R~  132 (194)
T 1qf9_A           82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVM-------TQRLLKRG  132 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred             CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHH-------HHHHHhcc
Confidence            35689999999999887776432    2589999999999999       99998875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.82  E-value=1.2e-19  Score=145.90  Aligned_cols=127  Identities=21%  Similarity=0.426  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC-CCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc-
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-  139 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~-~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~-  139 (219)
                      +++.|+|+|+|||||||+++.|++++|++||+.|+++++... ..++.++.+++++.+|...++++...++...+.... 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            367899999999999999999999999999999999988763 456778888888889999998887777766554321 


Q ss_pred             -ccCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          140 -YRGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       140 -~~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                       ...+..||+||+|.+..+.+.+...    ..+|.+|+|++|++++       ++|+.+|.
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~  135 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC-------IERCLERG  135 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHH-------HHHHHccc
Confidence             1235689999999998876655432    2478999999999999       99998774

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.75  E-value=1.7e-17  Score=140.09  Aligned_cols=132  Identities=20%  Similarity=0.314  Sum_probs=111.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++.+|+|+|+|||||||+++.|++++|+.+++.|++++......++.+..+...+.++...++..+.+.+...+...   
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~---  102 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR---  102 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence            46789999999999999999999999999999999988765555667888888888888889888877777666542   


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCc
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCN  203 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~  203 (219)
                      .+.+|++||+|++..+++.+.....++++|+|+++++++       ++|+.+|.++..+|+.
T Consensus       103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~-------l~r~~~r~~~~lSgrv  157 (246)
T 2bbw_A          103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETL-------KDRLSRRWIHPPSGRV  157 (246)
T ss_dssp             TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTEEEETTTTEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHH-------HHHHHcCCCcCCCCCc
Confidence            346799999999987777776656789999999999999       9999999988888854

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.66  E-value=3.3e-16  Score=122.83  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC----chhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~----s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      +.|+|+|+|||||||+++.| +++|++++++++++++.....    ...........+.   .+++....++.+.+..  
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--   75 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT--   75 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--
Confidence            67999999999999999999 999999999999999875421    1222222222221   1223344445555532  


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                       ..+..+|+||+ .+..+.+.+.... .++.+|+|++|++++       ++|+.+|..
T Consensus        76 -~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~-------~~R~~~R~~  124 (179)
T 3lw7_A           76 -SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIR-------YKRMIERLR  124 (179)
T ss_dssp             -CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHH-------HHHHHTCC-
T ss_pred             -cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHH-------HHHHHhccC
Confidence             23578999999 8888888887653 678999999999999       999998853

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.57  E-value=2.5e-14  Score=114.77  Aligned_cols=114  Identities=13%  Similarity=0.042  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHH-----------HH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI-----------FA  129 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i-----------~~  129 (219)
                      +.|+|+|+|||||||+++.|++++   |++++++++      +..++.++.+++.+.+|...++...           ..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999998   999998863      2446678888888877765554222           11


Q ss_pred             HHHHHHHhccccCCCeEEEe----------CccCCHH--HHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          130 LLSKRLEEGYYRGESGFILD----------GIPRTRI--QAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       130 Ll~~~l~~~~~~~~~g~IlD----------G~Pr~~~--qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ++...+.     .+..+|+|          |+|+..+  +...+..    ...||.+|+|++|++++       ++|+.+
T Consensus        75 ~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~  142 (195)
T 2pbr_A           75 KIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIA-------LRRLKE  142 (195)
T ss_dssp             THHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHT
T ss_pred             HHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHH-------HHHhhc
Confidence            1222222     24567778          6666432  3333321    12689999999999999       999987


Q ss_pred             CC
Q 027791          194 GS  195 (219)
Q Consensus       194 R~  195 (219)
                      |.
T Consensus       143 r~  144 (195)
T 2pbr_A          143 KN  144 (195)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.54  E-value=1.4e-14  Score=118.33  Aligned_cols=124  Identities=11%  Similarity=0.055  Sum_probs=87.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHH-------
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK-------  133 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~-------  133 (219)
                      .+++.|+|+|+|||||||+++.|+++++.+++++ +++++. ..+++.++.+++++.++..++++....+...       
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN   85 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999988888 556643 3357888888888877777776544333321       


Q ss_pred             HHHhccccCCCeEEEeCccCCH--HH-------HHHHH---h-hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          134 RLEEGYYRGESGFILDGIPRTR--IQ-------AVSLE---F-CYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~Pr~~--~q-------a~~l~---~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .+... ...+..+|+|+++.+.  .+       .+.+.   . ...+|.+|+|++|++++       ++|+.+|
T Consensus        86 ~i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~-------~~Rl~~r  151 (212)
T 2wwf_A           86 EIKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYA-------QNRSDYG  151 (212)
T ss_dssp             HHHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGG-------GGSTTTT
T ss_pred             HHHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHH-------HHhhccC
Confidence            12111 1124579999998641  11       12222   1 13689999999999999       9998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.51  E-value=1.4e-14  Score=114.97  Aligned_cols=117  Identities=15%  Similarity=0.080  Sum_probs=79.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH-HcCCCeeccchhHHhhcCCCch-----hHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK-LLEVPHISMGSLVRQELSPRSA-----LYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~-~lg~~~Is~~dllr~~~~~~s~-----lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~  136 (219)
                      +..|+|.|+|||||||+++.|++ .+++++++.+ .+++.....+.     ....-       .....+.+..++...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKK-------EGIVTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCGGGCCCCHHH-------HHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCccchhhhchhh-------hhHHHHHHHHHHHHHHh
Confidence            46799999999999999999999 6899999985 45555433211     11110       01112334444444442


Q ss_pred             hccccCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          137 EGYYRGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      ..  ..+.++|+||++.+..+.+.+...    ..+..+|+|++|++++       ++|+.+|..
T Consensus        74 ~~--~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~-------~~R~~~R~~  128 (181)
T 1ly1_A           74 GG--DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL-------VKRNSKRGT  128 (181)
T ss_dssp             SC--SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHH-------HHHHTTCGG
T ss_pred             hc--cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHH-------HHHHhcccc
Confidence            21  235789999999987776655432    2345799999999999       999998864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.48  E-value=1.6e-13  Score=115.50  Aligned_cols=122  Identities=15%  Similarity=0.019  Sum_probs=85.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC--CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHH-HHHHHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRLEE  137 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~L-l~~~l~~  137 (219)
                      .+++.|+|+|+|||||||+++.|++.++  +.++.+      ..+.+++.++.+++++.++...++....-+ ...+.+.
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~   97 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH   97 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999997  444433      235567899999999988875554433222 1233332


Q ss_pred             cc------ccCCCeEEEe----------CccCCHHHH--HHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          138 GY------YRGESGFILD----------GIPRTRIQA--VSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       138 ~~------~~~~~g~IlD----------G~Pr~~~qa--~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..      ...+..+|+|          |+|++..+.  +.+..    ...||++|+|++|++++       ++|+.+|.
T Consensus        98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~-------~~R~~~R~  170 (229)
T 4eaq_A           98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVG-------RERIIKNS  170 (229)
T ss_dssp             CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHHC-
T ss_pred             HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHhcC
Confidence            10      1234678999          999876543  34433    24799999999999999       99999884

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.46  E-value=6e-13  Score=108.49  Aligned_cols=116  Identities=13%  Similarity=0.048  Sum_probs=80.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .++.|+|+|+|||||||+++.|++.+|.++++.+++.....          ......|....+......+. .+.+.. .
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~-~l~~~~-~   84 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLA-AIGERL-A   84 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHH-HHHHHH-T
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHH-HHHHHH-h
Confidence            45689999999999999999999999999999988653211          11122344444432222222 122111 2


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      .+..+|+|+.+....+.+.+.... .++.+|+|++|++++       .+|+.+|..
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~-------~~Rl~~R~~  133 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVL-------AERMHHRTG  133 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHH-------HHHHHHHHS
T ss_pred             cCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHH-------HHHHHHhhc
Confidence            356799998877777777776543 457999999999999       999988753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.46  E-value=1.8e-13  Score=109.82  Aligned_cols=120  Identities=10%  Similarity=0.112  Sum_probs=71.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .+++.|+|+|+|||||||+++.|++++|+++++.|++...........+......+..   ..-+.+...+...+.    
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~----   75 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ----   75 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh----
Confidence            3568899999999999999999999999999998765432211000000000000000   000111122222222    


Q ss_pred             cCCCeEEEeCccCCHHHHHH---HHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          141 RGESGFILDGIPRTRIQAVS---LEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~---l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                       .+.++|+|+++....+.+.   +.. ...++.+|+|++|++++       ++|+.+|.
T Consensus        76 -~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~-------~~R~~~R~  126 (193)
T 2rhm_A           76 -SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVL-------VERILSRI  126 (193)
T ss_dssp             -TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHH-------HHHHHHHH
T ss_pred             -CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH-------HHHHHHhc
Confidence             2467999998732222222   322 23578999999999999       99998775

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.44  E-value=1.7e-13  Score=109.65  Aligned_cols=119  Identities=18%  Similarity=0.158  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHHhhc-CCCchhHHHHHHHHHcCCcccH--HHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPE--DVIFALLSKRL  135 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr~~~-~~~s~lg~~i~~~l~~g~~ip~--e~i~~Ll~~~l  135 (219)
                      +.|+|+|+|||||||+++.|+++++     +.+++.++++++.. ......+.   +  ..+...++  ......+..++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999999998     88998888887554 22111100   0  01222222  22222223333


Q ss_pred             Hhccc-cCCCeEEEeCccCCHHH--------HHHHHhhCCCcEEEEEEeChhhhcccccchhhh-hhc--CC
Q 027791          136 EEGYY-RGESGFILDGIPRTRIQ--------AVSLEFCYTMALAFLFLFLYGCCVIIGSVILNE-QVD--GS  195 (219)
Q Consensus       136 ~~~~~-~~~~g~IlDG~Pr~~~q--------a~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~R-l~~--R~  195 (219)
                      ..... ..+..+|+||++....|        .+.+... .|+.+|+|++|++++       ++| +.+  |.
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~-------~~rr~~~~~R~  140 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKII-------LSRQKRDTTRN  140 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHH-------HHHHHHCTTTC
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHH-------HHHHHhhcccC
Confidence            32110 13568999998543322        2333332 589999999999998       866 766  64

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.44  E-value=3.9e-13  Score=105.96  Aligned_cols=110  Identities=16%  Similarity=0.210  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      |+|+|+|+|||||||+++.|++++|+++++.|++.+...      +..+.+.+.. |.....++...++ ..+.     .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~-----~   68 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS-----E   68 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT-----T
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh-----c
Confidence            579999999999999999999999999999999887653      1222333322 2211111112222 1222     1


Q ss_pred             CCeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+|++ |  .+......+.+.   .++.+|+|++|++++       ++|+.+|.
T Consensus        69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~-------~~R~~~r~  114 (168)
T 2pt5_A           69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVF-------LERCKDSK  114 (168)
T ss_dssp             SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHH-------HHHCBCTT
T ss_pred             cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHH-------HHHHhCCC
Confidence            3456665 4  233334444443   368999999999999       99998874

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.43  E-value=3.2e-14  Score=113.86  Aligned_cols=114  Identities=18%  Similarity=0.107  Sum_probs=71.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHHhhcCC-Cc--hhHHHHHHHHHcCCccc--HHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSP-RS--ALYKQIANAVNEGKLVP--EDVIFALLS  132 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr~~~~~-~s--~lg~~i~~~l~~g~~ip--~e~i~~Ll~  132 (219)
                      ++.|+|+|+|||||||+++.|+++++     ++++++++++++.... +.  +.. .      -....+  ...+...+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~   75 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD-Q------MRKMDPETQKRIQKMAG   75 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGG-G------GSSCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHH-H------HhcCCHHHHHHHHHHHH
Confidence            46899999999999999999999998     9999999988765321 10  000 0      001101  122222333


Q ss_pred             HHHHhccccCCCeEEEeCccCCHHHH--------HHHHhhCCCcEEEEEEeChhhhcccccchhh-hhhc
Q 027791          133 KRLEEGYYRGESGFILDGIPRTRIQA--------VSLEFCYTMALAFLFLFLYGCCVIIGSVILN-EQVD  193 (219)
Q Consensus       133 ~~l~~~~~~~~~g~IlDG~Pr~~~qa--------~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~-Rl~~  193 (219)
                      +.+...  ..+..+|+||++....+.        ..+... .+|++|+|++|++++       ++ |+.+
T Consensus        76 ~~i~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~-------~~rRl~~  135 (192)
T 1kht_A           76 RKIAEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEI-------LMRRMSD  135 (192)
T ss_dssp             HHHHHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHH-------HHHHHTS
T ss_pred             HHHHhh--ccCCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHH-------HHHHhhh
Confidence            333321  124579999976421111        222222 478999999999999       96 8977

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.40  E-value=1.5e-12  Score=105.48  Aligned_cols=112  Identities=15%  Similarity=0.069  Sum_probs=74.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH--HH----
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS--KR----  134 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~--~~----  134 (219)
                      +++.|+|+|+|||||||+++.|++++ |++++++++.     ...++.++.+++++.++..+++... .++.  .+    
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~   76 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA   76 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence            56889999999999999999999999 6888876431     1245678888888877655554322 2221  11    


Q ss_pred             --HHhccccCCCeEEEeCccCCHH--H------HHHH---Hh-hCCCcEEEEEEeChhhh
Q 027791          135 --LEEGYYRGESGFILDGIPRTRI--Q------AVSL---EF-CYTMALAFLFLFLYGCC  180 (219)
Q Consensus       135 --l~~~~~~~~~g~IlDG~Pr~~~--q------a~~l---~~-~~~pd~VI~L~~~~e~l  180 (219)
                        +... ...+..+|+|+||.+..  +      .+.+   .. ...||.+|+|++|++++
T Consensus        77 ~~i~~~-l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~  135 (204)
T 2v54_A           77 SFIQEQ-LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEI  135 (204)
T ss_dssp             HHHHHH-HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHH
T ss_pred             HHHHHH-HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHH
Confidence              1111 11245789999986431  1      1222   21 13689999999999999

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.40  E-value=1.7e-13  Score=118.09  Aligned_cols=123  Identities=13%  Similarity=0.061  Sum_probs=78.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +..|+|.|+|||||||+++.|++++ |+++|+.| .+++.+...++ +.. .++...++....+.+..++...+...  .
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~   76 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D   76 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence            3679999999999999999999985 99999998 45655432111 000 00000000111223333333333110  2


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .+.++|+||++.+..+.+.+.+.    ..++.+|+|++|++++       ++|+.+|..+
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~~~  129 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL-------VKRNSKRGTK  129 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHH-------HHHHHHCGGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHH-------HHHHHhccCC
Confidence            35689999999887776666432    2355899999999999       9999998753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=5.1e-13  Score=109.09  Aligned_cols=109  Identities=13%  Similarity=0.167  Sum_probs=73.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      ++..|+|+|+|||||||+++.|++++|+++++.++++.....  .+    +.+.+.+ |.....+....++.. +.    
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~----i~~~~~~~~~~~~~~~e~~~l~~-l~----   92 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KT----VGELFTERGEAGFRELERNMLHE-VA----   92 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHHHHHHHHHHHHHHHHH-HT----
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--Cc----HHHHHHhcChHHHHHHHHHHHHH-Hh----
Confidence            456899999999999999999999999999999998876432  11    2222211 111111122222221 11    


Q ss_pred             cCCCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791          141 RGESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       141 ~~~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                       ...++|++   |.+......+.+..   ++.+|+|++|++++       .+|+.
T Consensus        93 -~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l-------~~Rl~  136 (199)
T 3vaa_A           93 -EFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVL-------FRRLR  136 (199)
T ss_dssp             -TCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHH-------HHHHH
T ss_pred             -hcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHH-------HHHHh
Confidence             23567888   56665555555544   68999999999999       99998

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.39  E-value=4.2e-12  Score=107.29  Aligned_cols=122  Identities=15%  Similarity=0.071  Sum_probs=79.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc-------CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK  133 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-------g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~  133 (219)
                      .+++.|+|.|++||||||+++.|++.+       |+.++    +.++  +.++++|+.+++++.++...+.....-+..+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~----~~re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~   96 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV----VTRE--PGGTRLGETLREILLNQPMDLETEALLMFAG   96 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE----EEES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee----eecC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            467899999999999999999999998       44443    2343  3678999999999988864443322222223


Q ss_pred             HHHhc------cccCCCeEEEeCccCC------------HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhh
Q 027791          134 RLEEG------YYRGESGFILDGIPRT------------RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       134 ~l~~~------~~~~~~g~IlDG~Pr~------------~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      +.+..      ....+..+|+|.|..+            .+....++.    ...||++|+|++|++++       ++|+
T Consensus        97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~-------~~Ri  169 (227)
T 3v9p_A           97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIA-------SARR  169 (227)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCG-------GGTT
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHH
Confidence            32211      0123456888976533            222233332    24799999999999999       9999


Q ss_pred             hcCC
Q 027791          192 VDGS  195 (219)
Q Consensus       192 ~~R~  195 (219)
                      .+|.
T Consensus       170 ~~R~  173 (227)
T 3v9p_A          170 GAVR  173 (227)
T ss_dssp             TCCC
T ss_pred             Hhcc
Confidence            9885

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.38  E-value=1.1e-12  Score=105.20  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHH-HcCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV-NEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l-~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      ++|+|+|+|||||||+++.|++++|+++++.|+++++...  .+.    .+.+ ..|.....+....++...+..     
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~-----   71 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RSI----ADIFATDGEQEFRRIEEDVVRAALAD-----   71 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SCH----HHHHHHHCHHHHHHHHHHHHHHHHHH-----
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CCH----HHHHHHhChHHHHHHHHHHHHHHHhc-----
Confidence            5699999999999999999999999999999998887542  111    1222 123322333333333332221     


Q ss_pred             CCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+|.+|  +.......+.+.    .+.+|+|++|++++       .+|+.+|.
T Consensus        72 ~~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~-------~~Rl~~r~  115 (184)
T 2iyv_A           72 HDGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEG-------VRRTGGNT  115 (184)
T ss_dssp             CCSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHH-------HHHTTCCC
T ss_pred             CCeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHH-------HHHHhCCC
Confidence            12233344  222222223332    56899999999999       99998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.38  E-value=7.3e-13  Score=108.05  Aligned_cols=124  Identities=16%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH-------H
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS-------K  133 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~-------~  133 (219)
                      .+++.|+|+|+|||||||+++.|+++++..++++. .+++. ..+++.++.+++++.++..++++....+..       .
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   84 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP   84 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999877777663 33332 124677888888887766666543322111       0


Q ss_pred             HHHhccccCCCeEEEeCcc-----CC-------HHHHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          134 RLEEGYYRGESGFILDGIP-----RT-------RIQAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~P-----r~-------~~qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .+... ...+..+|+|.+.     +.       .+....+.. ...+|.+|+|++|++++       .+|+.+|
T Consensus        85 ~i~~~-l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~-------~~Rl~r~  150 (215)
T 1nn5_A           85 LIKEK-LSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADA-------AKRGAFG  150 (215)
T ss_dssp             HHHHH-HHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHH-------HHC----
T ss_pred             HHHHH-HHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHH-------HHHhccC
Confidence            11111 1134578889432     21       121222221 13589999999999999       9999643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.38  E-value=6.4e-13  Score=105.15  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=68.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .+..|+|+|+|||||||+++.|++++|++++++|+++++...  .    .+.+.+. .|.....+....++.. +.+   
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~----~~~~~~~~~g~~~~~~~~~~~l~~-~~~---   75 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--L----SVREIFEELGEDNFRMFEKNLIDE-LKT---   75 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--S----CHHHHHHHTCHHHHHHHHHHHHHH-HHT---
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--C----CHHHHHHHhCHHHHHHHHHHHHHH-HHh---
Confidence            456889999999999999999999999999999998887542  1    1233332 2332222222233332 221   


Q ss_pred             cCCCeE-EEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          141 RGESGF-ILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       141 ~~~~g~-IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                        ...+ |++ |  ++.. +.   +   ..++.+|+|++|++++       ++|+.+|
T Consensus        76 --~~~~~Vi~~g~g~~~~-~~---l---~~~~~vi~l~~~~e~~-------~~Rl~~r  117 (168)
T 1zuh_A           76 --LKTPHVISTGGGIVMH-EN---L---KGLGTTFYLKMDFETL-------IKRLNQK  117 (168)
T ss_dssp             --CSSCCEEECCGGGGGC-GG---G---TTSEEEEEEECCHHHH-------HHHHCC-
T ss_pred             --cCCCEEEECCCCEech-hH---H---hcCCEEEEEECCHHHH-------HHHHhcc
Confidence              1233 444 3  4433 21   2   2478999999999999       9999887

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.38  E-value=1.1e-12  Score=108.08  Aligned_cols=122  Identities=15%  Similarity=0.166  Sum_probs=75.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCcccHH-----------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVPED-----------  125 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip~e-----------  125 (219)
                      +++.|+|+|++||||||+++.|++ +|+++++.|++.++...++.+....+.+.+..     ...+...           
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            468899999999999999999998 99999999999988765544444454443311     1112211           


Q ss_pred             -------HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          126 -------VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       126 -------~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                             ++...+.+.+.........++++.+.|...+..  +.  ..+|.+|+|++|++++       ++|+.+|.
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~--~~--~~~d~vi~l~~~~e~~-------~~Rl~~R~  147 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS--LY--KKANRVLVVDVSPETQ-------LKRTMQRD  147 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT--GG--GGCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccC--cc--ccCCEEEEEECCHHHH-------HHHHHHcC
Confidence                   112222211111000101234444445443322  22  2478999999999999       99998773

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.37  E-value=9.6e-12  Score=103.21  Aligned_cols=121  Identities=14%  Similarity=0.034  Sum_probs=80.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH-HHHHHhc-
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKRLEEG-  138 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll-~~~l~~~-  138 (219)
                      +..|+|.|++|||||||++.|++.+  |.+++.+    ++  +.+++.++.+++.+.++..++.....-+. .+|.++. 
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~----~e--P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~   75 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT----RE--PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   75 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE----ES--STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe----eC--CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999988  5565533    22  46789999999999888777665432221 1121110 


Q ss_pred             -----cccCCCeEEEeCccC----------C--HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          139 -----YYRGESGFILDGIPR----------T--RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       139 -----~~~~~~g~IlDG~Pr----------~--~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                           ....+.-+|.|.|..          .  .+....+..    ...||++|+|++|++++       ++|+.+|..
T Consensus        76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~-------~~Ri~~r~~  147 (205)
T 4hlc_A           76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVG-------RERIIKNSR  147 (205)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHC---
T ss_pred             HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHH-------HHHHHhcCC
Confidence                 012245577786542          1  222233332    24799999999999999       999988854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.37  E-value=8.1e-13  Score=106.71  Aligned_cols=111  Identities=12%  Similarity=0.229  Sum_probs=73.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH-cCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc---cHHHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL-LEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV---PEDVIFALLSKRLE  136 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~-lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i---p~e~i~~Ll~~~l~  136 (219)
                      .+++.|+|+|+|||||||+++.|+++ +|++++++|+++++... ....++.    ... ..+   +++.....+...+.
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~   81 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMV   81 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhh-cccCCCCHHHHHHHHHHHHh
Confidence            35678999999999999999999999 79999999999987511 1112221    111 122   33333333343332


Q ss_pred             hccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          137 EGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .     ..++|+|+....     .+.. ..++.||+|++|++++       ++|+.+|.
T Consensus        82 ~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~-------~~Rl~~R~  122 (184)
T 1y63_A           82 S-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVL-------FERLTKRQ  122 (184)
T ss_dssp             S-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHH-------HHHHHHTT
T ss_pred             c-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHH-------HHHHHhCC
Confidence            1     347888876321     1211 1367999999999999       99999885

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.37  E-value=1.6e-12  Score=105.45  Aligned_cols=115  Identities=17%  Similarity=0.068  Sum_probs=70.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHHcCCc---ccHHHHHHHH--HHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKL---VPEDVIFALL--SKR  134 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~---ip~e~i~~Ll--~~~  134 (219)
                      +++.|+|+|+|||||||+++.|+++++..  ++...+          +.++.+++++.++..   .+... ..++  ..+
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~r   71 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW----------NSSDWIHDIIKEAKKKDLLTPLT-FSLIHATDF   71 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET----------TCCCHHHHHHHHHTTTSCCCHHH-HHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC----------CcHHHHHHHHhccccccCCCHHH-HHHHHHHHH
Confidence            35789999999999999999999999874  443211          123344444443321   22211 1111  111


Q ss_pred             H-------HhccccCCCeEEEeCccCCHH--H---------HHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhh-cC
Q 027791          135 L-------EEGYYRGESGFILDGIPRTRI--Q---------AVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQV-DG  194 (219)
Q Consensus       135 l-------~~~~~~~~~g~IlDG~Pr~~~--q---------a~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~-~R  194 (219)
                      .       ... ...+..+|+|++|.+..  |         .+.+.. ...+|.+|+|++|++++       .+|+. +|
T Consensus        72 ~~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~-------~~Rl~~~R  143 (213)
T 2plr_A           72 SDRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIA-------LERIKKSK  143 (213)
T ss_dssp             HHHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHH-------HHHHHHTT
T ss_pred             HHHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHhccc
Confidence            1       111 12346789999987531  1         222322 23589999999999999       99998 77


Q ss_pred             C
Q 027791          195 S  195 (219)
Q Consensus       195 ~  195 (219)
                      .
T Consensus       144 ~  144 (213)
T 2plr_A          144 R  144 (213)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.36  E-value=4e-12  Score=103.71  Aligned_cols=119  Identities=14%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCc-----cc---------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VP---------------  123 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-----ip---------------  123 (219)
                      +.|.|+|++||||||+++.|++ +|+++++.|++.++...++.+....+.+.+.....     +.               
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            5789999999999999999987 99999999999887655444333333322211100     00               


Q ss_pred             ---HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ---EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ---~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                         +.+....+...+.+... ..+.++|+|+ |...+. . +..  ..|.+|+|++|++++       .+|+.+|.
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~-~~l~e~-~-~~~--~~d~vi~l~~~~e~~-------~~Rl~~R~  145 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIEN-K-LTA--LCDRILVVDVSPQTQ-------LARSAQRD  145 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTTT-T-CGG--GCSEEEEEECCHHHH-------HHHHC---
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCEEEEEe-chhhhc-C-cHh--hCCEEEEEECCHHHH-------HHHHHHcC
Confidence               11222222222221110 1245788897 432221 1 222  368999999999999       99999884

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.36  E-value=2.1e-11  Score=101.83  Aligned_cols=121  Identities=16%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCC--cccHHHHH-HHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVIF-ALLSKRL  135 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~--~ip~e~i~-~Ll~~~l  135 (219)
                      +++.|+|.|++||||||+++.|++.+   |++++.+    ++  +.++++|+.+++++.++.  .+++.... -...++.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~   78 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA   78 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999988   4555533    33  357899999999998774  34443221 1112222


Q ss_pred             Hhc------cccCCCeEEEeCccC------------CHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          136 EEG------YYRGESGFILDGIPR------------TRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       136 ~~~------~~~~~~g~IlDG~Pr------------~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ++.      ....+..+|.|-|..            ..+....++.    ...||++|+|++|++++       ++|+.+
T Consensus        79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~-------~~Ri~~  151 (213)
T 4edh_A           79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIG-------LARAAA  151 (213)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHCC
T ss_pred             HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHh
Confidence            211      012345688895532            1233333332    25799999999999999       999998


Q ss_pred             CC
Q 027791          194 GS  195 (219)
Q Consensus       194 R~  195 (219)
                      |.
T Consensus       152 R~  153 (213)
T 4edh_A          152 RG  153 (213)
T ss_dssp             CS
T ss_pred             cC
Confidence            84

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.34  E-value=9.3e-12  Score=99.12  Aligned_cols=113  Identities=13%  Similarity=0.019  Sum_probs=65.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc----c--HHHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV----P--EDVIFALLSKRL  135 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i----p--~e~i~~Ll~~~l  135 (219)
                      +++.|+|+|+|||||||+++.|+++++.+++...          ...+..+++.+.+|...    .  .+.+...+...+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~----------~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l   73 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP----------EEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYAS   73 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCT----------HHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch----------hhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999998311          12233333333222110    0  123344444444


Q ss_pred             HhccccCCCeEEEeCccCCHHHH----HHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          136 EEGYYRGESGFILDGIPRTRIQA----VSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       136 ~~~~~~~~~g~IlDG~Pr~~~qa----~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..    .+..+|+|+........    +.+.....+..+|+|++|++++       ++|+.+|.
T Consensus        74 ~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~-------~~R~~~R~  126 (183)
T 2vli_A           74 RE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVV-------LERLRRDG  126 (183)
T ss_dssp             HH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHH-------HHHHHTC-
T ss_pred             Hh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHH-------HHHHHhcc
Confidence            32    23457889765554332    2233222233569999999999       99999885

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.34  E-value=7.6e-12  Score=98.78  Aligned_cols=109  Identities=8%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      +.|+|+|+|||||||+++.|++++|+++++.|+++++..  +.+..+.+.+   .|.....++...++. .+.      .
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~~~~~~~~~~~~~~~-~l~------~   70 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGWPGFRRRESEALQ-AVA------T   70 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHHHHHHHHHHHHHH-HHC------C
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHH---cCHHHHHHHHHHHHH-Hhh------c
Confidence            479999999999999999999999999999999887652  2222211110   111111111112211 121      2


Q ss_pred             CeEEEe-C--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh--cC
Q 027791          144 SGFILD-G--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV--DG  194 (219)
Q Consensus       144 ~g~IlD-G--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~--~R  194 (219)
                      .++|++ |  .+......+.+..   ++.+|+|++|++++       .+|+.  +|
T Consensus        71 ~~~vi~~g~~~~~~~~~~~~l~~---~~~~i~l~~~~e~~-------~~R~~~~~r  116 (173)
T 1e6c_A           71 PNRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEEL-------ALRLQASLQ  116 (173)
T ss_dssp             SSEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHH-------HHHHHHHHC
T ss_pred             CCeEEECCCcEEeCHHHHHHHHc---CCeEEEEECCHHHH-------HHHHhhccC
Confidence            345664 5  3334444444443   58999999999999       99998  77

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.32  E-value=1.6e-11  Score=104.58  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH---cCCCee--ccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL---LEVPHI--SMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~---lg~~~I--s~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~  136 (219)
                      +++.|+|+|+|||||||+++.|++.   +|++++  +.|+ +++.+....+.++.          .........+...+ 
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~~~e~----------~~~~~~~~~i~~~l-   70 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKEKYEE----------FIKKSTYRLIDSAL-   70 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCGGGHH----------HHHHHHHHHHHHHH-
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhHHHHH----------HHHHHHHHHHHHHh-
Confidence            5688999999999999999999998   789888  6654 45443321111111          01111222233322 


Q ss_pred             hccccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          137 EGYYRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                          .. ..+|+|+.+....+.+.+..    ...++.+|+|++|++++       ++|+.+|.
T Consensus        71 ----~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~-------~~R~~~R~  121 (260)
T 3a4m_A           71 ----KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVL-------IRRNIERG  121 (260)
T ss_dssp             ----TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHH-------HHHHHHTT
T ss_pred             ----hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHH-------HHHHHhCC
Confidence                12 68999998777665555543    24578999999999999       99998875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.30  E-value=8.7e-12  Score=100.71  Aligned_cols=122  Identities=13%  Similarity=0.086  Sum_probs=73.6

Q ss_pred             CCCCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc---CCcccHHHH-------
Q 027791           58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE---GKLVPEDVI-------  127 (219)
Q Consensus        58 ~~~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~---g~~ip~e~i-------  127 (219)
                      +.+.+++.|.|+|++||||||+++.|++. |+++++.|+++++.. .+.+  ..+.+.++.   ...+....+       
T Consensus         3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~   78 (203)
T 1uf9_A            3 HEAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSD   78 (203)
T ss_dssp             ---CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTS
T ss_pred             CcccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCC
Confidence            44567889999999999999999999998 999999999887764 2222  222222210   111222211       


Q ss_pred             -----------HHHH-HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          128 -----------FALL-SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       128 -----------~~Ll-~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                                 ..++ .+.+......+...+|+|+ |.....  .+.  ..+|.+|+|+++++++       .+|+.+|.
T Consensus        79 ~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~-------~~R~~~R~  146 (203)
T 1uf9_A           79 PERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEER-------VRRVMARS  146 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHH-------HHHHHTTT
T ss_pred             HHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHH-------HHHHHHcC
Confidence                       1111 1222221112346788886 322111  011  1368999999999999       99998873

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.29  E-value=2.6e-12  Score=102.74  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=72.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++..|+|+|+|||||||+++.|++++|++++++++++++.... ...+..     .......++.+...+...+..    
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----   79 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY-DGYDEE-----YDCPILDEDRVVDELDNQMRE----   79 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCE-EEEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchh-hhhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence            4567899999999999999999999999999999988765110 000000     001112333344444444433    


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                        .++|+|+.....     +.. ..++.+|+|++|++++       .+|+.+|..
T Consensus        80 --g~~vv~~~~~~~-----~~~-~~~~~vi~L~~~~e~l-------~~R~~~r~~  119 (180)
T 3iij_A           80 --GGVIVDYHGCDF-----FPE-RWFHIVFVLRTDTNVL-------YERLETRGY  119 (180)
T ss_dssp             --CCEEEECSCCTT-----SCG-GGCSEEEEEECCHHHH-------HHHHHHTTC
T ss_pred             --CCEEEEechhhh-----cch-hcCCEEEEEECCHHHH-------HHHHHHcCC
Confidence              367888654321     111 1278999999999999       999998853

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.29  E-value=1.1e-11  Score=107.26  Aligned_cols=123  Identities=15%  Similarity=0.195  Sum_probs=78.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCcccH----------
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVPE----------  124 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip~----------  124 (219)
                      +.+++.|+|+|+|||||||+++.|+ ++|+++|++|++.++...++.+....+.+.+..     ...+..          
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            4567899999999999999999999 699999999999888776655544444332211     001111          


Q ss_pred             --------HHHHHHH----HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791          125 --------DVIFALL----SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       125 --------e~i~~Ll----~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                              +++...+    .+++......+...+|+||.....  .. +.  ..+|.+|+|++|++++       ++|+.
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~--~~-~~--~~~d~vI~l~a~~ev~-------~~Rl~  218 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLE--AG-WQ--SMVHEVWTVVIPETEA-------VRRIV  218 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTT--TT-GG--GGCSEEEEEECCHHHH-------HHHHH
T ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhc--cc-hH--HhCCEEEEEcCCHHHH-------HHHHH
Confidence                    1111111    122221111124579999963221  11 11  1368999999999999       99998


Q ss_pred             cCC
Q 027791          193 DGS  195 (219)
Q Consensus       193 ~R~  195 (219)
                      +|.
T Consensus       219 ~R~  221 (281)
T 2f6r_A          219 ERD  221 (281)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            873

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.29  E-value=3.8e-11  Score=97.94  Aligned_cols=115  Identities=10%  Similarity=0.019  Sum_probs=75.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHH-------HHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSK  133 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e-------~i~~Ll~~  133 (219)
                      .++..|+|+|++||||||+++.|+..+|..+++.+++....         .. .....|....+.       .+..++..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~---------~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~   96 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE---------NI-ATMQRGIPLTDEDRWPWLRSLAEWMDA   96 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHH---------HH-HHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHH---------HH-HHHhcCCCCCCcccccHHHHHHHHHHH
Confidence            35678999999999999999999999999999987764211         00 011122222221       11222222


Q ss_pred             HHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          134 RLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .+.     ....+|+|.......+.+.+.+...+..+|+|++|++++       .+|+.+|...
T Consensus        97 ~~~-----~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l-------~~Rl~~R~~~  148 (200)
T 4eun_A           97 RAD-----AGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVI-------KGRMSKREGH  148 (200)
T ss_dssp             HHH-----TTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHH-------HHHHTTCSCC
T ss_pred             HHh-----cCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHH-------HHHHHhcccC
Confidence            222     234678886555555566666555566899999999999       9999988643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.28  E-value=6.3e-12  Score=102.24  Aligned_cols=116  Identities=14%  Similarity=0.185  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----CcccH--------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPE--------------  124 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip~--------------  124 (219)
                      ++|.|+|++||||||+++.|++ +|++++++|+++++....+......+.+.....     ..+..              
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            5799999999999999999999 999999999999877654444334443332111     01111              


Q ss_pred             ----HHHHHHH----HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          125 ----DVIFALL----SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       125 ----e~i~~Ll----~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                          .+....+    .+.+...  .+...+|+||.-.....   +..  .+|.+|+|++|++++       ++|+.+|
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~~--~~~~~i~l~~~~e~~-------~~Rl~~R  144 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TYK--NYDKLIVVYAPYEVC-------KERAIKR  144 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CGG--GSSEEEEECCCHHHH-------HHHHHHT
T ss_pred             HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---chh--hCCEEEEEECCHHHH-------HHHHHHc
Confidence                1111111    1112211  11257889984221111   111  378999999999999       9999887

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.27  E-value=2.1e-11  Score=95.75  Aligned_cols=98  Identities=19%  Similarity=0.051  Sum_probs=64.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      +.|+|+|+|||||||+++.|++++++++++.+++......    .    ...+            ... ..+.     .+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~----~----~~~~------------~~~-~~l~-----~~   55 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG----N----EKLF------------EHF-NKLA-----DE   55 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC----H----HHHH------------HHH-HHHT-----TC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH----H----HHHH------------HHH-HHHH-----hC
Confidence            4789999999999999999999999999999876654320    0    0000            100 1111     12


Q ss_pred             CeEEEeCcc---------------CCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          144 SGFILDGIP---------------RTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       144 ~g~IlDG~P---------------r~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      ..+|.|-+.               ....+...+... ..|+.+|+|++|++++       .+|+.+|
T Consensus        56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~-------~~R~~~r  115 (173)
T 3kb2_A           56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVI-------KKRLRVR  115 (173)
T ss_dssp             CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHH-------HHHHHHH
T ss_pred             CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHH-------HHHHHhc
Confidence            345555221               122333444332 4689999999999999       9999886

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.27  E-value=2.1e-11  Score=103.47  Aligned_cols=125  Identities=14%  Similarity=0.043  Sum_probs=77.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC---CcccHHHHHH-HHHHHHHh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIFA-LLSKRLEE  137 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g---~~ip~e~i~~-Ll~~~l~~  137 (219)
                      ++..|+|.|++||||||+++.|++.+....++...+.++  +.++++++.+++++..+   ..+++....- +...+.+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            567999999999999999999999986555553344554  36789999999998632   2344332211 11112111


Q ss_pred             c------cccCCCeEEEeCcc----------CC--HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          138 G------YYRGESGFILDGIP----------RT--RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       138 ~------~~~~~~g~IlDG~P----------r~--~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .      ....+..+|.|-|.          +.  .+....++.    ...||++|+|++|++++       ++|+.+|.
T Consensus       104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~-------~~Ri~~R~  176 (236)
T 3lv8_A          104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLG-------LERARGRG  176 (236)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHC-----
T ss_pred             HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH-------HHHHHhcC
Confidence            1      01234568889543          21  222233322    24799999999999999       99999885

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.27  E-value=1.3e-10  Score=92.22  Aligned_cols=110  Identities=11%  Similarity=0.033  Sum_probs=70.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHH-------HHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED-------VIFALLSKR  134 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e-------~i~~Ll~~~  134 (219)
                      ++..|+|+|+|||||||+++.|++.+|.++++.+++.+..         .+.. ...|..+.+.       .+..++...
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~   76 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFAM   76 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHHH
Confidence            4678999999999999999999999999999988764320         0100 0112222211       112222222


Q ss_pred             HHhccccCCCeEEEe-CccCCHHHHHHHHhhCCCc-EEEEEEeChhhhcccccchhhhhhcCC
Q 027791          135 LEEGYYRGESGFILD-GIPRTRIQAVSLEFCYTMA-LAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       135 l~~~~~~~~~g~IlD-G~Pr~~~qa~~l~~~~~pd-~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +.     .+..+|+| |++ ...+.+.+... .++ .+|+|++|++++       ++|+.+|.
T Consensus        77 ~~-----~~~~~vi~~~~~-~~~~~~~l~~~-~~~~~vv~l~~~~e~~-------~~R~~~R~  125 (175)
T 1knq_A           77 QR-----TNKVSLIVCSAL-KKHYRDLLREG-NPNLSFIYLKGDFDVI-------ESRLKARK  125 (175)
T ss_dssp             HH-----HCSEEEEECCCC-SHHHHHHHHTT-CTTEEEEEEECCHHHH-------HHHHHTST
T ss_pred             Hh-----cCCcEEEEeCch-HHHHHHHHHhc-CCCEEEEEEECCHHHH-------HHHHHhcc
Confidence            21     13578888 554 33444555543 245 799999999999       99999885

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.27  E-value=2.4e-11  Score=97.14  Aligned_cols=108  Identities=11%  Similarity=0.031  Sum_probs=69.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhcccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +..|+|+|+|||||||+++.|++++|+++++.|+++++...  .+..    +.+.. |+....+....++.. +..    
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~----~~~~~~g~~~~~~~~~~~~~~-~~~----   73 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIA----WIFEMEGEAGFRRREREMIEA-LCK----   73 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHH----HHHHHHHHHHHHHHHHHHHHH-HHH----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChh----hHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence            45799999999999999999999999999999998776432  1111    11111 111111222233332 222    


Q ss_pred             CCCeEEEeC--ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh
Q 027791          142 GESGFILDG--IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       142 ~~~g~IlDG--~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      ....+|..|  .+......+.+...   +.+|+|++|++++       .+|+
T Consensus        74 ~~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l-------~~Rl  115 (185)
T 3trf_A           74 LDNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQ-------LKRI  115 (185)
T ss_dssp             SSSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHH-------HHHH
T ss_pred             cCCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHH-------HHHH
Confidence            123344444  45555555555542   5899999999999       9999

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.27  E-value=2.3e-11  Score=101.60  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=78.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC-----CcccHHHHH--------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVIF--------  128 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g-----~~ip~e~i~--------  128 (219)
                      +++.|+|.|++||||||+++.|++.+.-..++...+.++  +.++++|+.+++++...     ..+.+....        
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~   79 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV   79 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence            367899999999999999999999883332211123343  46789999999998732     334443211        


Q ss_pred             ----HHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchh
Q 027791          129 ----ALLSKRLEEGYYRGESGFILDGIPRT------------RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVIL  188 (219)
Q Consensus       129 ----~Ll~~~l~~~~~~~~~g~IlDG~Pr~------------~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~  188 (219)
                          ..+.+.++     .+.-+|.|-|..+            .+....++.    ...||++|+|++|++++       +
T Consensus        80 ~~~~~~i~paL~-----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~-------~  147 (213)
T 4tmk_A           80 QLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVG-------L  147 (213)
T ss_dssp             HHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------H
T ss_pred             HHHHHHHHHHHH-----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHH-------H
Confidence                12222222     2456888965321            222333332    24799999999999999       9


Q ss_pred             hhhhcCC
Q 027791          189 NEQVDGS  195 (219)
Q Consensus       189 ~Rl~~R~  195 (219)
                      +|+.+|.
T Consensus       148 ~Ri~~R~  154 (213)
T 4tmk_A          148 KRARARG  154 (213)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9998874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.26  E-value=3.1e-12  Score=101.97  Aligned_cols=108  Identities=13%  Similarity=0.103  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHH-cCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~-~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      +.|+|+|+|||||||+++.|++++|+++++.|+++++...  .+.    .+.+. .|.....+....++. .+..     
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~-~l~~-----   72 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKV----SEIFEQKRENFFREQEQKMAD-FFSS-----   72 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCH----HHHHHHHCHHHHHHHHHHHHH-HHTT-----
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCH----HHHHHHcCHHHHHHHHHHHHH-HHHc-----
Confidence            3699999999999999999999999999999998876421  111    12221 222222222223322 2221     


Q ss_pred             CCeEEEe-CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILD-GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlD-G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+|++ |.+...+ .. +.   ..+.+|+|++|++++       .+|+.+|.
T Consensus        73 ~~~~vi~~g~~~~~~-~~-l~---~~~~~i~l~~~~e~~-------~~R~~~r~  114 (175)
T 1via_A           73 CEKACIATGGGFVNV-SN-LE---KAGFCIYLKADFEYL-------KKRLDKDE  114 (175)
T ss_dssp             CCSEEEECCTTGGGS-TT-GG---GGCEEEEEECCHHHH-------TTCCCGGG
T ss_pred             cCCEEEECCCCEehh-hH-Hh---cCCEEEEEeCCHHHH-------HHHHhccc
Confidence            2346666 6433222 11 32   247899999999999       99987763

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.22  E-value=1.2e-11  Score=101.98  Aligned_cols=39  Identities=15%  Similarity=0.211  Sum_probs=36.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      ++.|.|+|++||||||+++.|++.||+++++.|++++..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~   43 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   43 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence            468999999999999999999999999999999999854

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.21  E-value=2.8e-11  Score=103.49  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=75.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhcccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      +..|+|+|++||||||+++.|++.+|+++++.+++++.... +.++    .+.+.. |+....+....++......    
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i----~~i~~~~ge~~fr~~e~~~l~~l~~~----  118 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSV----AEIFEHFGESVFREKETEALKKLSLM----  118 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCH----HHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccH----HHHHHHhCcHHHHHHHHHHHHHHHhh----
Confidence            56799999999999999999999999999999998887652 2222    222222 3333333333333332222    


Q ss_pred             CCCeEEEe--CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          142 GESGFILD--GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       142 ~~~g~IlD--G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ....+|.+  |.+......+.+.    .+.+|||+++++++       .+|+.+
T Consensus       119 ~~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l-------~~Rl~~  161 (250)
T 3nwj_A          119 YHQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEAL-------AHRIAA  161 (250)
T ss_dssp             CSSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHH-------HHHHHC
T ss_pred             cCCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHH-------HHHHhh
Confidence            12345554  4666666665553    27899999999999       999976

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.20  E-value=3.6e-11  Score=101.95  Aligned_cols=119  Identities=12%  Similarity=-0.012  Sum_probs=70.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhHHhhcCCC----chhHHHHHHHHHcCCcccHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKR  134 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dllr~~~~~~----s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~  134 (219)
                      .++..|+|+|+|||||||+++.|+++++.  .+++. |.++......    ...+..+.++.+.   ...+.+..++...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~-D~~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~  105 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL  105 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG-GGGGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec-HHHHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence            46788999999999999999999999973  44454 5566543220    0011111111110   0112222222222


Q ss_pred             HHhccccCCCeEEEeCccCCHHHHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          135 LEEGYYRGESGFILDGIPRTRIQAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +.     .+.++|+||++++..+...+.    .......++++++|++++       .+|..+|.
T Consensus       106 ~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~-------~~R~~~R~  158 (253)
T 2p5t_B          106 SS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELS-------YLSTLIRY  158 (253)
T ss_dssp             HH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHH-------HHHHHHHH
T ss_pred             Hh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHH-------HHHHHHHH
Confidence            22     235799999998776544433    222333467889999999       88887663

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.19  E-value=3.6e-10  Score=93.02  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH------HH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS------KR  134 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~------~~  134 (219)
                      |.|+|.|+.|||||||++.|++.|   |.+++.+.    +  +.+++.++.+++.+.++...|.....-...      +.
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr----e--P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR----E--PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE----S--SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE----C--CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999987   77776442    2  567889999999887665544322111111      11


Q ss_pred             HHhccccCCCeEEEeCccCC------------HHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          135 LEEGYYRGESGFILDGIPRT------------RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~Pr~------------~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      +... ...+.-+|.|-|..+            .+....+..    ...||++|+|++|++++       ++|..+|
T Consensus        75 I~~~-L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~-------~~R~~~~  142 (197)
T 3hjn_A           75 IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETA-------LKRKGEL  142 (197)
T ss_dssp             HHHH-HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHC---
T ss_pred             HHHH-HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHH-------HHhCcCc
Confidence            2111 123456788966422            111222221    24799999999999999       9997655

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.19  E-value=4.1e-11  Score=100.18  Aligned_cols=123  Identities=11%  Similarity=0.031  Sum_probs=83.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCccc------------
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVP------------  123 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip------------  123 (219)
                      ...-.|.++|.+||||||+++.|++ +|+++|+.|.+.++.+.++.+..+.+.+.+..     ...+.            
T Consensus         7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~   85 (210)
T 4i1u_A            7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE   85 (210)
T ss_dssp             CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence            3456799999999999999999987 99999999999999888777666666554421     11122            


Q ss_pred             ------HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ------EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ------~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                            +.++..++.+.+.+... ....-+|+|. |.-.+... +..  .+|.+|++++|+++.       .+|+.+|+
T Consensus        86 ~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~~--~~D~vi~V~ap~e~r-------~~Rl~~Rd  153 (210)
T 4i1u_A           86 DARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WKA--RCDRVLVVDCPVDTQ-------IARVMQRN  153 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HHH--HCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-ccc--cCCeEEEEECCHHHH-------HHHHHhcC
Confidence                  13444444444433211 1233467774 54333111 122  279999999999999       99999885

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.15  E-value=9.5e-11  Score=96.28  Aligned_cols=116  Identities=11%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcC----Cccc-------------
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVP-------------  123 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g----~~ip-------------  123 (219)
                      ..-+.|.|+|++||||||+++.|++.+|+++|++|++.++....   ..+.+.+.+...    ..+.             
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~   86 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESRE   86 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHH
Confidence            34578999999999999999999999999999999998887542   112222222100    0011             


Q ss_pred             -----HHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhh
Q 027791          124 -----EDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       124 -----~e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                           +.++...+...+.......+..+|+|+ |...+. . +..  ..|.+|++++|+++.       ++|+
T Consensus        87 ~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~-~-~~~--~~d~vi~v~a~~e~r-------~~Rl  147 (192)
T 2grj_A           87 NLKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM-G-LDQ--LCDHVITVVASRETI-------LKRN  147 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT-T-GGG--GCSEEEEEECCHHHH-------HHHC
T ss_pred             HHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec-C-hHH--hCCEEEEEECCHHHH-------HHHH
Confidence                 112222222222221101133567774 543332 1 222  368999999999999       9987

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.14  E-value=2.6e-11  Score=102.55  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=72.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCC----------eeccchhHHhhcCCCchhHHHHHHHHHcCCc-------cc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGKL-------VP  123 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~----------~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~-------ip  123 (219)
                      .+++.|.|+|+|||||||+|+.|++.+|++          ++++|++++....      ..+. ....|..       ..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~------~~~~-~~~~g~~~f~~~~~~d   92 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS------EQKA-KALKGQFNFDHPDAFD   92 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH------HHHH-HHHTTCSCTTSGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh------hhhh-hhccCCCCCCCcchhh
Confidence            466889999999999999999999999998          7999998874210      1111 1112221       11


Q ss_pred             HHHHHHHHHHHHHhcc--------------------ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhccc
Q 027791          124 EDVIFALLSKRLEEGY--------------------YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVII  183 (219)
Q Consensus       124 ~e~i~~Ll~~~l~~~~--------------------~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~  183 (219)
                      .+.+...|+. +....                    ......+|+||.+.-.+ .. +..  .+|.+|+|+++++++   
T Consensus        93 ~~~l~~~L~~-l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~-~~-~~~--~~d~vi~l~~~~e~~---  164 (252)
T 1uj2_A           93 NELILKTLKE-ITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-QE-VRD--LFQMKLFVDTDADTR---  164 (252)
T ss_dssp             HHHHHHHHHH-HHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-HH-HHH--HCSEEEEEECCHHHH---
T ss_pred             HHHHHHHHHH-HHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC-HH-HHH--hcCeeEEEeCCHHHH---
Confidence            2222333333 22110                    01245799999654211 11 222  258999999999999   


Q ss_pred             ccchhhhhhcCC
Q 027791          184 GSVILNEQVDGS  195 (219)
Q Consensus       184 ~~~~~~Rl~~R~  195 (219)
                          ++|+.+|.
T Consensus       165 ----~~R~~~R~  172 (252)
T 1uj2_A          165 ----LSRRVLRD  172 (252)
T ss_dssp             ----HHHHHHHH
T ss_pred             ----HHHHHHHH
Confidence                99998774

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.13  E-value=2.7e-10  Score=89.90  Aligned_cols=112  Identities=15%  Similarity=0.136  Sum_probs=66.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      +..|+|+|+|||||||+++.|++.++.++++.++++++...  ..+......   .|+....+.-..++. .+..     
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~-~l~~-----   72 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVIN-ELTE-----   72 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHH-HHHT-----
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHH-HHHh-----
Confidence            45799999999999999999999999999999888775432  112111110   011000111112222 2221     


Q ss_pred             CCeEEEe---CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          143 ESGFILD---GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       143 ~~g~IlD---G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..++|+.   |.+......+.+..   .+++++++++++++       .+|+.+|.
T Consensus        73 ~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l-------~~R~~~r~  118 (173)
T 1kag_A           73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQ-------LARTQRDK  118 (173)
T ss_dssp             SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHH-------HSCC----
T ss_pred             CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHH-------HHHHhCCC
Confidence            2345553   45554444454544   47899999999999       99998874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.12  E-value=3e-10  Score=95.68  Aligned_cols=122  Identities=13%  Similarity=0.026  Sum_probs=69.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHH-HHHHHHHHhc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF-ALLSKRLEEG  138 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~-~Ll~~~l~~~  138 (219)
                      .+++.|+|.|++||||||+++.|++.++- ..+++-.+.++  +.++++++.+++++.+....+..... -...+|.+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999998755 33322111233  45789999999988753324443322 1112222211


Q ss_pred             c------ccCCCeEEEeCccCC------------HHHHHHHHhh---CCCcEEEEEEeChhhhcccccchhhhh
Q 027791          139 Y------YRGESGFILDGIPRT------------RIQAVSLEFC---YTMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       139 ~------~~~~~g~IlDG~Pr~------------~~qa~~l~~~---~~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      .      ...+..+|.|-|..+            .+....++..   ..||++|+|++|++++       ++|+
T Consensus        97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~-------~~Ri  163 (223)
T 3ld9_A           97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINES-------LSRS  163 (223)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------
T ss_pred             HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHH-------HHHh
Confidence            0      122456788966421            2222233222   3799999999999999       9998

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.11  E-value=1.6e-10  Score=92.98  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      +.|+|+|+|||||||+++.|+++++.+++.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            478999999999999999999999987764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.11  E-value=2.8e-10  Score=103.55  Aligned_cols=101  Identities=11%  Similarity=0.053  Sum_probs=74.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      +..+..|+|+|+|||||||+++.|++++++.+|+.|++ +.        .               ..+...+...+..  
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------~---------------~~~~~~~~~~l~~--  308 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-GS--------W---------------QRCVSSCQAALRQ--  308 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-CS--------H---------------HHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-HH--------H---------------HHHHHHHHHHHhc--
Confidence            45678899999999999999999999999999999875 10        0               1122223334433  


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                         +..+|+|+...+..+.+.+..    ......+|+|+++.+++       .+|+.+|..
T Consensus       309 ---g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l-------~~R~~~R~~  359 (416)
T 3zvl_A          309 ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA-------RHNNRFREM  359 (416)
T ss_dssp             ---TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH-------HHHHHHHHH
T ss_pred             ---CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHH-------HHHHHhhcc
Confidence               357999998887766555432    23456799999999999       999988864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.10  E-value=4.4e-10  Score=94.17  Aligned_cols=121  Identities=13%  Similarity=0.046  Sum_probs=78.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCC-cccHHHHHHH-HHHHHHhc-
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-LVPEDVIFAL-LSKRLEEG-  138 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~-~ip~e~i~~L-l~~~l~~~-  138 (219)
                      +++.|+|.|++||||||+++.|++.++..+    .++++. ..++++|+.+++++.+.. ..++....-+ ..+|.+.. 
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999998732    344433 357899999999998654 3333221111 11222100 


Q ss_pred             ----cccCCCeEEEeCccCCH--H---------HHHHHHh----hCCCcEEEEE-EeChhhhcccccchhhhhhcC
Q 027791          139 ----YYRGESGFILDGIPRTR--I---------QAVSLEF----CYTMALAFLF-LFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       139 ----~~~~~~g~IlDG~Pr~~--~---------qa~~l~~----~~~pd~VI~L-~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                          ....+..+|.|-|..+.  .         ..+++..    ...||++|+| ++|++++       ++|+.+|
T Consensus        79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~-------~~R~~~~  147 (216)
T 3tmk_A           79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNN-------AEKSGFG  147 (216)
T ss_dssp             HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCG-------GGCCSSS
T ss_pred             HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHH-------HHHhccC
Confidence                01234567889664321  0         1223332    2379999999 9999999       9997643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.08  E-value=6.9e-10  Score=89.76  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      .|.|+|++||||||+++.|++++|+++++.|++.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~   40 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA   40 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence            7899999999999999999999999999999988765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.07  E-value=2.3e-10  Score=99.21  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=67.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc--CCCeeccchhHHhhcCCCchhHHHHHHHHHcC----CcccHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPEDVIFALLSKR  134 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g----~~ip~e~i~~Ll~~~  134 (219)
                      .++..|+|.|+|||||||+++.|++++  ++.+||.| .++.......   ..+.+....-    ......+...++...
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D-~~R~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~v~~~  106 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND-TFKQQHPNFD---ELVKLYEKDVVKHVTPYSNRMTEAIISRL  106 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH-HHHTTSTTHH---HHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech-HhHHhchhhH---HHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence            467889999999999999999999999  78888874 4665443211   1111111000    001112223333444


Q ss_pred             HHhccccCCCeEEEeCccCCHHHHHHH----HhhCCCcEEEEEEeChhhh
Q 027791          135 LEEGYYRGESGFILDGIPRTRIQAVSL----EFCYTMALAFLFLFLYGCC  180 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l----~~~~~pd~VI~L~~~~e~l  180 (219)
                      +..     +..+|+|+.+....+.+.+    .....+..+++|.+|++++
T Consensus       107 l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~  151 (287)
T 1gvn_B          107 SDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS  151 (287)
T ss_dssp             HHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred             Hhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence            433     4579999988876644333    2222344579999999988

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.06  E-value=2.3e-10  Score=95.68  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=37.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      +.++..|.|+|++||||||+++.|++++|+++++.|++.+..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~   54 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   54 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence            356778999999999999999999999999999999998864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.04  E-value=4.5e-09  Score=83.17  Aligned_cols=120  Identities=13%  Similarity=0.045  Sum_probs=64.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeec--cchhHHhhcCCCch---hHHHHHHHHHcCCcc-cH---HHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSA---LYKQIANAVNEGKLV-PE---DVIFALLSK  133 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is--~~dllr~~~~~~s~---lg~~i~~~l~~g~~i-p~---e~i~~Ll~~  133 (219)
                      ++.|+|+|+|||||||+++.|+++++.+++.  .|++.. ...+...   .+..+.   ..+... .+   .....+ ..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~   77 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE-AMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAW-AE   77 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH-HSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHH-HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh-hcchhhccchhhcccc---CCCccccchhHHHHHHHH-HH
Confidence            4679999999999999999999999887764  655443 3222100   000000   000000 01   111111 11


Q ss_pred             HHHhccccCCCeEEEeCccC-CHHHHHHH-HhhC-CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          134 RLEEGYYRGESGFILDGIPR-TRIQAVSL-EFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~Pr-~~~qa~~l-~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+.... ..+..+|+|+... .....+.+ .... .+..+|+|++|.+++       .+|+.+|.
T Consensus        78 ~~~~~~-~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l-------~~R~~~r~  134 (178)
T 1qhx_A           78 GVVAMA-RAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA-------EGRETARG  134 (178)
T ss_dssp             HHHHHH-HTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHH-------HHHHHHTS
T ss_pred             HHHHHH-hcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHH-------HHHHHhhC
Confidence            111110 1235689998543 22211222 2222 234688899999999       99998875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.00  E-value=1.5e-10  Score=95.01  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=36.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE  101 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~  101 (219)
                      ++.|+|+|++||||||+++.|++++|+++++.|++++..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~   41 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL   41 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence            467999999999999999999999999999999998863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.98  E-value=3e-09  Score=85.24  Aligned_cols=110  Identities=15%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC---C--CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH--HH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---V--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SK  133 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg---~--~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll--~~  133 (219)
                      .++..|+|+|+|||||||+++.|++.++   .  .+++. |.++..+.....+...-+          ...+..+.  ..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~   79 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG-DWARTTVSEGAGFTREER----------LRHLKRIAWIAR   79 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH-HHHHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence            4678999999999999999999999874   3  34544 445554332111100000          01111111  11


Q ss_pred             HHHhccccCCCeEEEeCccCCHHHHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791          134 RLEEGYYRGESGFILDGIPRTRIQAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                      .+.    ..+..+|+|++.......+.+.    ....++.+|+|++|++++       .+|+.
T Consensus        80 ~~~----~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~-------~~R~~  131 (186)
T 2yvu_A           80 LLA----RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEV-------IRRDP  131 (186)
T ss_dssp             HHH----TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHH-------HHHCH
T ss_pred             HHH----hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHH-------HHhhh
Confidence            111    1234567788654433333332    223578999999999999       88874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.98  E-value=3.8e-09  Score=84.14  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=32.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccc-hhHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQ  100 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~-dllr~  100 (219)
                      .++..|+|+|++||||||+++.|++.+   |++++.++ +.++.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~   46 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ   46 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence            467889999999999999999999998   99988654 34444

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.97  E-value=3.1e-09  Score=87.18  Aligned_cols=107  Identities=13%  Similarity=0.007  Sum_probs=63.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC------CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHH---HHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI---FALL  131 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg------~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i---~~Ll  131 (219)
                      .++..|+|+|+|||||||+++.|++.++      +.+++. |.++..+.........-+          .+.+   ..++
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~-d~~r~~l~~~~~~~~~~r----------~~~~~~~~~~~   91 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADR----------NENIRRIAEVA   91 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHH----------HHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC-hHHhhhhccccCCCHHHH----------HHHHHHHHHHH
Confidence            4578899999999999999999999886      666664 445544332111110000          0111   1222


Q ss_pred             HHHHHhccccCCCeEEEeCccCC-HHHHHHHHh----------hCCCcEEEEEEeChhhhcccccchhhhh
Q 027791          132 SKRLEEGYYRGESGFILDGIPRT-RIQAVSLEF----------CYTMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDG~Pr~-~~qa~~l~~----------~~~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      ...+.     .+..+|+| |+.. ....+.+..          ...|+.+|+|++|++++       ++|+
T Consensus        92 ~~~l~-----~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~-------~~R~  149 (211)
T 1m7g_A           92 KLFAD-----SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA-------EQRD  149 (211)
T ss_dssp             HHHHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHH-------HTSC
T ss_pred             HHHHH-----CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHH-------HHhh
Confidence            22232     24568889 5431 122333322          12468999999999999       8884

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.90  E-value=7.8e-10  Score=90.19  Aligned_cols=120  Identities=16%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc-CCCeeccchhHHhhcCCCchhHHHHHHHHHcC---CcccHHHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIFALLSKRLE  136 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g---~~ip~e~i~~Ll~~~l~  136 (219)
                      .++..|.|+|+|||||||+++.|++.+ ++.+++.|++++..-+-  ..+.   ......   ..+....+.+.+...++
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~i~~~l~   93 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETDK---NGFLQYDVLEALNMEKMMSAISCWME   93 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBCT---TSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hccc---cCCChhHHHHHhHHHHHHHHHHHHHh
Confidence            356789999999999999999999988 89999999887543110  0000   000000   00111222222222222


Q ss_pred             hc---c-------ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          137 EG---Y-------YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       137 ~~---~-------~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      ..   .       ......+|+||++...  .+.+.  ..+|.+|+++++++++       .+|+.+|..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~~--~~~d~~i~l~~~~~~~-------~~R~~~R~~  152 (207)
T 2qt1_A           94 SARHSVVSTDQESAEEIPILIIEGFLLFN--YKPLD--TIWNRSYFLTIPYEEC-------KRRRSTRVY  152 (207)
T ss_dssp             HHTTSSCCC-----CCCCEEEEECTTCTT--CGGGT--TTCSEEEEEECCHHHH-------HHHHHHSCC
T ss_pred             CCCCCCcCCCeeecCCCCEEEEeehHHcC--cHHHH--HhcCeeEEEECCHHHH-------HHHHHHcCC
Confidence            10   0       0124578999975331  11121  2579999999999999       999987753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.90  E-value=4.9e-09  Score=88.85  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ  100 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~  100 (219)
                      .++..|.|+|++||||||+++.|+++||+++++.|+++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~   64 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV   64 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence            3567899999999999999999999999999999998855

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.89  E-value=4e-09  Score=86.08  Aligned_cols=121  Identities=12%  Similarity=0.050  Sum_probs=71.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCCc---h----hHHHHHHHHHcCCcccHH-------
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRS---A----LYKQIANAVNEGKLVPED-------  125 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~s---~----lg~~i~~~l~~g~~ip~e-------  125 (219)
                      .++..|+|+|||||||||+++.|++.++- .+++..+..|+......   .    ..+.+...+.++..+...       
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            56778999999999999999999999853 34444444444321100   0    012334444444332210       


Q ss_pred             -HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCC--CcEEEEEE-eChhhhcccccchhhhhhcCCC
Q 027791          126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYT--MALAFLFL-FLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       126 -~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~--pd~VI~L~-~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                       .....+.+.+..     +..+|+|+.+....   .+.....  -..+|+|+ ++++++       .+|+.+|..
T Consensus        90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l-------~~Rl~~R~~  149 (204)
T 2qor_A           90 GTLKSEYDLAVGE-----GKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDIL-------LGRLKNRNT  149 (204)
T ss_dssp             EEEHHHHHHHHHT-----TCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHH-------HHHHHTCTT
T ss_pred             cCCHHHHHHHHHc-----CCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHH-------HHHHHHcCC
Confidence             001122333332     46899998764333   3333222  23899999 999999       999998863

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.89  E-value=7e-09  Score=85.41  Aligned_cols=117  Identities=11%  Similarity=0.033  Sum_probs=65.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCC-chhHHHHHHHHHcCC-cc------------cHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SALYKQIANAVNEGK-LV------------PEDVIF  128 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~-s~lg~~i~~~l~~g~-~i------------p~e~i~  128 (219)
                      .+.|.|.|++||||||+++.||+++|+++++ +++++...... .+. ..+.+.-+... ..            ..+.+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            4689999999999999999999999999999 88887654321 111 11111100000 00            011112


Q ss_pred             HHHHHHHHhcccc-CCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          129 ALLSKRLEEGYYR-GESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       129 ~Ll~~~l~~~~~~-~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      ....+.+.+. .. ...+.|++|--  -.  -.+.. ..-.++|+|++|.+++       .+|+.++
T Consensus        84 ~~~~~~i~~l-a~~~~~~~Vi~Gr~--g~--~vl~~-~~~~~~V~L~A~~e~r-------~~R~~~~  137 (201)
T 3fdi_A           84 IRQFNFIRKK-ANEEKESFVIVGRC--AE--EILSD-NPNMISAFILGDKDTK-------TKRVMER  137 (201)
T ss_dssp             HHHHHHHHHH-HHTSCCCEEEESTT--HH--HHTTT-CTTEEEEEEEECHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHH-HhhcCCCEEEEECC--cc--hhcCC-CCCeEEEEEECCHHHH-------HHHHHHH
Confidence            2222222221 10 23568888751  11  11221 1125899999999999       9998765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.84  E-value=3.4e-10  Score=92.11  Aligned_cols=123  Identities=15%  Similarity=0.081  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchh-HHHHHHHHHc--CCcccHHHHHHHHH--------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL-YKQIANAVNE--GKLVPEDVIFALLS--------  132 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~l-g~~i~~~l~~--g~~ip~e~i~~Ll~--------  132 (219)
                      +.|+|.|++||||||+++.|++.++...+++. +++... .+++. ++.++..+..  +...++.....++.        
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAFPR-YGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV   78 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEESSE-EEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEeecC-CCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence            36899999999999999999999854333221 111100 01111 2223332211  11111111111111        


Q ss_pred             HHHHhccccCCCeEEEeCccCCH--HHH------------HHHHhh-------CCCcEEEEEEeChhhhcccccchhhhh
Q 027791          133 KRLEEGYYRGESGFILDGIPRTR--IQA------------VSLEFC-------YTMALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       133 ~~l~~~~~~~~~g~IlDG~Pr~~--~qa------------~~l~~~-------~~pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      +.+.... ..+..+|+|+++.+.  .|.            +++...       ..||.+|+|++|++++       ++|+
T Consensus        79 ~~i~~~l-~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~-------~~R~  150 (214)
T 1gtv_A           79 HTIQGLC-RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELA-------GERS  150 (214)
T ss_dssp             HHHHHEE-EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHH-------HHHH
T ss_pred             HHHHHHh-hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHH-------HHHH
Confidence            1122211 224568899998653  121            222221       2589999999999999       9999


Q ss_pred             hcCCC
Q 027791          192 VDGSL  196 (219)
Q Consensus       192 ~~R~~  196 (219)
                      .+|..
T Consensus       151 ~~R~~  155 (214)
T 1gtv_A          151 RGRAQ  155 (214)
T ss_dssp             HHHHH
T ss_pred             Hcccc
Confidence            88853

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.82  E-value=1.2e-08  Score=86.62  Aligned_cols=120  Identities=12%  Similarity=0.101  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHh-hcC--CCchhHHHHHH---H-H-----HcCCcccHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ-ELS--PRSALYKQIAN---A-V-----NEGKLVPEDVIFALL  131 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~-~~~--~~s~lg~~i~~---~-l-----~~g~~ip~e~i~~Ll  131 (219)
                      ..|+|+|||||||||+++.|+++++.++++.|++... ...  ...+...+...   . +     .++ ........+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~   80 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL   80 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence            4688999999999999999999999999999886421 110  00010000000   0 0     000 12333333344


Q ss_pred             HHHHHhccccCCCeEEEeCccCCHHHHHHH-Hhh---CCC-cEEEEEEeCh-hhhcccccchhhhhhcCC
Q 027791          132 SKRLEEGYYRGESGFILDGIPRTRIQAVSL-EFC---YTM-ALAFLFLFLY-GCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       132 ~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l-~~~---~~p-d~VI~L~~~~-e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+ +.. ..+..+|++|-..  ...+.+ ...   ... ..+|+|++|. +++       .+|+.+|.
T Consensus        81 ~~~i-~~~-~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l-------~~Rl~~R~  139 (253)
T 2ze6_A           81 IFEV-DWR-KSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAF-------LTRAKQRV  139 (253)
T ss_dssp             HHHH-HTT-TTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHH-------HHHHHHHH
T ss_pred             HHHH-HHH-hCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHH-------HHHHHHHH
Confidence            4444 321 2345677775322  222222 220   112 2689999997 999       99998874

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.80  E-value=1.3e-08  Score=85.51  Aligned_cols=41  Identities=7%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS  103 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~  103 (219)
                      ..+.|.|.|++||||||+++.||+++|+++++ +|+++....
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~   53 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE   53 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence            35789999999999999999999999999999 677776553

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.80  E-value=4.8e-08  Score=79.34  Aligned_cols=110  Identities=14%  Similarity=0.113  Sum_probs=63.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCC--eeccchhHHhhcCCCchhH-HHHHHHHHcCCcccHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSKR  134 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~--~Is~~dllr~~~~~~s~lg-~~i~~~l~~g~~ip~e~i~~Ll~~~  134 (219)
                      .++..|+|+|++||||||+++.|+..+   |..  +++.+++ +..+.....+. +.....+        ..+..+ ...
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~   92 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV-RHGLNRDLSFKAEDRAENI--------RRVGEV-AKL   92 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHH-HHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh-hhHhhcccCcChHHHHHHH--------HHHHHH-HHH
Confidence            456789999999999999999999998   655  7776554 33332211110 0000000        001111 111


Q ss_pred             HHhccccCCCeEEEeCccCCHHHHHHHHhhCC--CcEEEEEEeChhhhcccccchhhhh
Q 027791          135 LEEGYYRGESGFILDGIPRTRIQAVSLEFCYT--MALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~--pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                      +..    .+..+|.++........+.+.+...  ...+|+|+++.+++       .+|.
T Consensus        93 ~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~-------~~R~  140 (200)
T 3uie_A           93 FAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVC-------EARD  140 (200)
T ss_dssp             HHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHH-------HHHC
T ss_pred             HHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHH-------HHhc
Confidence            221    2345666654334455555555433  34679999999999       9997

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.76  E-value=6.7e-08  Score=92.38  Aligned_cols=113  Identities=19%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccc-hhHHhhcCCCchhHHHHH-HHHHcCCcccHHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALYKQIA-NAVNEGKLVPEDVIFALLSKRL  135 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~-dllr~~~~~~s~lg~~i~-~~l~~g~~ip~e~i~~Ll~~~l  135 (219)
                      .+++.|+|+|+|||||||+++.|++++   |++++.++ |.+|..+.........-+ +.+       .+ +..++...+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~-------r~-i~eva~~~l  121 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV-------RR-IAEVAKLFA  121 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH-------HH-HHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH-------HH-HHHHHHHHH
Confidence            367899999999999999999999999   99988774 566654432111110000 000       01 112222112


Q ss_pred             HhccccCCCeEEEeC-ccCC--HHHHHHH-HhhCCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          136 EEGYYRGESGFILDG-IPRT--RIQAVSL-EFCYTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       136 ~~~~~~~~~g~IlDG-~Pr~--~~qa~~l-~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      .     .+.-+|.|+ .|..  .+....+ .....++.+|+|++|++++       .+|+.+
T Consensus       122 ~-----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl-------~~Rl~r  171 (630)
T 1x6v_B          122 D-----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVC-------EQRDVK  171 (630)
T ss_dssp             H-----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHH-------HHHCTT
T ss_pred             h-----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHH-------HHHhcc
Confidence            2     123455552 2221  1222222 2223468999999999999       999763

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.75  E-value=1.6e-09  Score=91.85  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc-CCCeec
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHIS   93 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~Is   93 (219)
                      .+++.|+|.|++||||||+++.|++.+ ++.++.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            577899999999999999999999998 666663

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.72  E-value=4.7e-09  Score=98.29  Aligned_cols=120  Identities=16%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCe-----eccchhHHhhcCCCchhHHHHHHHHHcCC----cccHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRSALYKQIANAVNEGK----LVPEDVIFALL  131 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~-----Is~~dllr~~~~~~s~lg~~i~~~l~~g~----~ip~e~i~~Ll  131 (219)
                      ..+..|+++|.|||||||+++.|++.++..+     |+.|++.++........     +++....    ...+++....+
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~~~~l  107 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCALAAL  107 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999985443     67788555433221100     0010000    00011222222


Q ss_pred             H---HHHHhccccCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeC-hhhhcccccchhhhhhcCC
Q 027791          132 S---KRLEEGYYRGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFL-YGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       132 ~---~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~-~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .   ..+..   ..+..+|+|+...+..+.+.+...    .....+|++.|+ ++++       .+|+.+|.
T Consensus       108 ~~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i-------~~ri~~r~  169 (520)
T 2axn_A          108 RDVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVV-------ASNIMEVK  169 (520)
T ss_dssp             HHHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHH-------HHHHHHHT
T ss_pred             HHHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHH-------HHHHHhhh
Confidence            2   22211   235679999988887766554322    222346666677 5666       77876554

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.66  E-value=1.2e-07  Score=80.19  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=37.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      .+++.|.|.|||||||||+++.|++++|+++++.|++++...
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~   48 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT   48 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence            356889999999999999999999999999999999987743

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.58  E-value=3.2e-08  Score=88.01  Aligned_cols=30  Identities=17%  Similarity=0.001  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ..+++.|+|.|+.||||||+++.|++.++-
T Consensus         4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            4 MVTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            346789999999999999999999998854

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.58  E-value=4.5e-07  Score=85.32  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC-----CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE  136 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~-----~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~  136 (219)
                      .+..|+|+|+|||||||+++.|+++++.     .+++. |.++..+..+......-+...     +  +.+..++...+.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-----l--~~i~~~~~~~l~  442 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-----I--LRVGFVASEIVK  442 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-----H--HHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-----H--HHHHHHHHHHHh
Confidence            4678999999999999999999998863     56665 456665543221111100000     0  011122222222


Q ss_pred             hccccCCCeEEEeCccCCHHHHHHHHhhC-CCc-EEEEEEeChhhhcccccchhhhhhc
Q 027791          137 EGYYRGESGFILDGIPRTRIQAVSLEFCY-TMA-LAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       137 ~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~-~pd-~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                           .+.++|+|+........+.+.... .++ .+|+|++|.+++       .+|+.+
T Consensus       443 -----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~-------~~Rl~r  489 (546)
T 2gks_A          443 -----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVC-------EERDVK  489 (546)
T ss_dssp             -----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGH-------HHHCCS
T ss_pred             -----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHH-------HHHhhc
Confidence                 246899997433333333333322 256 899999999999       999863

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.52  E-value=4.1e-07  Score=72.72  Aligned_cols=116  Identities=11%  Similarity=-0.024  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      ..++|+||+||||||+++.|++.++. .+++.+++.+. ...+.. .+..       ...+...+.+.+........ ..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~~~~-~~~~-------~~~~~~~~~~~l~~~~~~~~-~~   72 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVGGYR-PPWE-------SDELLALTWKNITDLTVNFL-LA   72 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCTTCC-CGGG-------CHHHHHHHHHHHHHHHHHHH-HT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hccccc-cCcc-------chhHHHHHHHHHHHHHHHHH-hc
Confidence            46889999999999999999998865 67777665432 111100 0000       00011112222211111110 12


Q ss_pred             CCeEEEeCccCCHHHHHHHHhh----C-C-CcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFC----Y-T-MALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~----~-~-pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      ...+|+|++- .....+.+...    . . ...+++|.++.+++       .+|...|...
T Consensus        73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l-------~~R~~~r~~d  125 (189)
T 2bdt_A           73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREEL-------LRRDALRKKD  125 (189)
T ss_dssp             TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHH-------HHHTTTSCC-
T ss_pred             CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHH-------HHHHHhcccc
Confidence            3468999852 33322222221    1 1 33568899999999       9999888644

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.50  E-value=3.3e-08  Score=79.71  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..|+|+|++||||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            46789999999999999999999876

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.48  E-value=1e-06  Score=73.04  Aligned_cols=119  Identities=9%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhHHhhcC--CCchhHHHHHHHHHcCCcccHHHH---HHHH--
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELS--PRSALYKQIANAVNEGKLVPEDVI---FALL--  131 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dllr~~~~--~~s~lg~~i~~~l~~g~~ip~e~i---~~Ll--  131 (219)
                      +++.|+|+|.|||||+|+++.+.+.+|   +++++++|.++++..  .+-++...+.+. .-.+..-..++   ..+.  
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~-~ykE~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS-TYKEAFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC--------CCSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchh-hhHHHHHHHHHHHHHHHHhc
Confidence            567899999999999999999988884   788999999985321  111110100000 00000000000   0000  


Q ss_pred             -----HHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCC-CcEEEEEEeChhhhcccccchhhhh
Q 027791          132 -----SKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYT-MALAFLFLFLYGCCVIIGSVILNEQ  191 (219)
Q Consensus       132 -----~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~-pd~VI~L~~~~e~l~~~~~~~~~Rl  191 (219)
                           .+.....  .....|||||. |...+.+.|.+... .-.+|.+.+++++.       .+|.
T Consensus        89 d~~~~~~~~~~~--~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R-------~~Rg  144 (202)
T 3ch4_B           89 DPGFFCRKIVEG--ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSR-------QQRG  144 (202)
T ss_dssp             CTTTTHHHHSBT--CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHH-------HHTT
T ss_pred             CchHHHHHHHHh--cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHH-------HHHh
Confidence                 0011111  12347999998 88888999976432 24579999999999       8984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.45  E-value=7.9e-07  Score=70.81  Aligned_cols=118  Identities=17%  Similarity=0.129  Sum_probs=64.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCC--eeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      ++..++|+|+|||||||+++.|+..++..  +++.+++.... ......+     ++.+... +...+.+.+....... 
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~-----~~~~~~~-~~~~v~~~l~~~~~~~-   79 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDP-----WLPQSHQ-QNRMIMQIAADVAGRY-   79 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCT-----TSSSHHH-HHHHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccC-----Cccchhh-hhHHHHHHHHHHHHHH-
Confidence            56789999999999999999999987655  66666654321 1110000     0000000 1112222221111100 


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+..+++|++.... ..+.+.....+..++++.++.+++       +.|+..|.
T Consensus        80 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~-------~~R~~~r~  127 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEA-------IERCLDRG  127 (191)
T ss_dssp             HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHH-------HHHHHTTC
T ss_pred             hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHH-------HHHHHhcC
Confidence            0123457889865432 222232212233689999999999       99998774

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.42  E-value=4.4e-07  Score=73.82  Aligned_cols=118  Identities=11%  Similarity=0.055  Sum_probs=53.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCee--ccchhHHhh---cCCCchhHHHHHHHHHcCCcccHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHI--SMGSLVRQE---LSPRSALYKQIANAVNEGKLVPEDVIFALLS  132 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~I--s~~dllr~~---~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~  132 (219)
                      .++..|.|+|++||||||+++.|+..+   +..++  +.+...+..   ...+.+.+..   +. .+. +..+.+.+.+-
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~-~~~-~d~~~l~~~v~   94 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YY-YLQ-WDVEWLTHQLF   94 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HH-HTS-SCHHHHHHHTG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CC-ccc-cCHHHHHHHHH
Confidence            467889999999999999999999876   55443  444433221   1112221211   11 111 11122212110


Q ss_pred             HHHHh--------------------ccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhh
Q 027791          133 KRLEE--------------------GYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQV  192 (219)
Q Consensus       133 ~~l~~--------------------~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~  192 (219)
                      ..+..                    .......-+|+||......   .+..  .+|.+|++++|++++       ++|+.
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~--~~d~~i~v~~~~~~~-------~~R~~  162 (201)
T 1rz3_A           95 RQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRK---EWRP--FFDFVVYLDCPREIR-------FAREN  162 (201)
T ss_dssp             GGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTST---TTGG--GCSEEEEECCC----------------
T ss_pred             HHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccH---HHHh--hcCEEEEEeCCHHHH-------HHHHh
Confidence            11100                    0011244688898532211   1111  368999999999999       99999


Q ss_pred             cCC
Q 027791          193 DGS  195 (219)
Q Consensus       193 ~R~  195 (219)
                      +|.
T Consensus       163 ~R~  165 (201)
T 1rz3_A          163 DQV  165 (201)
T ss_dssp             ---
T ss_pred             cCC
Confidence            886

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.39  E-value=7.1e-07  Score=74.42  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-CC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~   89 (219)
                      +++.|+|.|++||||||+++.|++.+ ++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~   29 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            46889999999999999999999999 44

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.39  E-value=4.6e-07  Score=75.34  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      ..++..|.|+|+.||||||+++.|+.. +..+
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v   47 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI   47 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence            357789999999999999999999876 4433

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.38  E-value=2.1e-06  Score=70.21  Aligned_cols=120  Identities=15%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCC---Cch----hHHHHHHHHHcCCcccHH-------
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPED-------  125 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~---~s~----lg~~i~~~l~~g~~ip~e-------  125 (219)
                      .++..|+|+||+||||||+++.|++.+.- .+.+.....+.....   +..    ......+.+.++..+...       
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y   85 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY   85 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence            35678999999999999999999998753 333322222221111   000    012233333333321100       


Q ss_pred             -HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeC-hhhhcccccchhhhhhcCC
Q 027791          126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFL-YGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       126 -~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~-~e~l~~~~~~~~~Rl~~R~  195 (219)
                       +....+.+.++.     +..+|+|..+...   ..+........+|++..+ .+++       .+|+.+|.
T Consensus        86 g~~~~~i~~~l~~-----g~~vild~~~~g~---~~~~~~~~~~~~i~i~~ps~~~l-------~~Rl~~R~  142 (208)
T 3tau_A           86 GTPLEYVEEKLAA-----GVDIFLEIEVQGA---MQVRKAMPEGIFIFLTPPDLSEL-------KNRIIGRG  142 (208)
T ss_dssp             EEEHHHHHHHHHT-----TCCEEEECCHHHH---HHHHHHCTTSEEEEEECTTTTTS-------SCC-----
T ss_pred             CCcHHHHHHHHHc-----CCeEEEEeeHHHH---HHHHHhCCCeEEEEEeCCCHHHH-------HHHHHhcC
Confidence             001112333333     4568999864333   333332222256666655 8888       89998885

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.37  E-value=2.5e-06  Score=80.67  Aligned_cols=113  Identities=15%  Similarity=0.064  Sum_probs=61.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC----CC--eeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE----VP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKR  134 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg----~~--~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~  134 (219)
                      .+++.|+|+|+|||||||+++.|+++++    .+  +++ +|.++..+.........-+.  .   .  -+.+..++...
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD-~D~ir~~l~~~~~f~~~er~--~---~--i~ri~~v~~~~  465 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL-GDTVRHELSSELGFTREDRH--T---N--IQRIAFVATEL  465 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE-HHHHHHHTCTTCCCSHHHHH--H---H--HHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC-cHHHHHHhccccCCChhHHH--H---H--HHHHHHHHHHH
Confidence            4568899999999999999999999986    44  444 35566544322111100000  0   0  00111222222


Q ss_pred             HHhccccCCCeEEEeCccCCHHHHHHHHhh---CCCcEEEEEEeChhhhcccccchhhhhhc
Q 027791          135 LEEGYYRGESGFILDGIPRTRIQAVSLEFC---YTMALAFLFLFLYGCCVIIGSVILNEQVD  193 (219)
Q Consensus       135 l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~---~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~  193 (219)
                      ..     .+..+|.|..-......+.+.+.   ..++.+|+|++|.+++       .+|..+
T Consensus       466 ~~-----~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~-------~~R~~r  515 (573)
T 1m8p_A          466 TR-----AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHC-------EQSDKR  515 (573)
T ss_dssp             HH-----TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHH-------HHHCSS
T ss_pred             Hh-----CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHH-------HHHhcc
Confidence            22     23456666432112222222211   1245899999999999       898643

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.34  E-value=1.2e-06  Score=78.06  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCChHHHH-HHHHHHcCCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYA-DNLSKLLEVP   90 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a-~~La~~lg~~   90 (219)
                      .+++.|+|.|+.||||||++ +.|++.++-.
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~   40 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITP   40 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            46789999999999999999 9999987643

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.28  E-value=5e-07  Score=72.68  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++..+.|+||+||||||+++.|+..+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456789999999999999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.21  E-value=1.7e-06  Score=76.96  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl   97 (219)
                      .++..|+|+||+||||||++..||++++.++||.|.+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            3456899999999999999999999999999999875

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.18  E-value=6.8e-06  Score=75.46  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      .++..|+++|.|||||||+++.|++.++...++
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~   69 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVP   69 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence            467899999999999999999999987644443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.18  E-value=4e-06  Score=67.93  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC--CCeeccchhHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVR   99 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~~dllr   99 (219)
                      .++..|.|+|++||||||+++.|+..++  +.+++.+..++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            3567899999999999999999999998  88888877654

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.14  E-value=1e-05  Score=71.74  Aligned_cols=28  Identities=18%  Similarity=0.084  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .+++.|+|.|+.||||||+++.|++.+.
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3578999999999999999999999875

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.13  E-value=1.9e-05  Score=71.11  Aligned_cols=28  Identities=18%  Similarity=0.084  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .+++.|+|.|+.||||||+++.|++.+.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5778999999999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.11  E-value=2.9e-06  Score=69.17  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccch
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS   96 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~d   96 (219)
                      .++..|.|+||+||||||+++.|+..+.     ..+|+.++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            4678899999999999999999999875     55666654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.03  E-value=2.5e-05  Score=65.18  Aligned_cols=30  Identities=17%  Similarity=0.150  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .++..|.|+||+||||||+++.|+..+|..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            356789999999999999999999988865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.00  E-value=8.9e-06  Score=71.74  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll   98 (219)
                      .++..|.|.|++||||||+++.|+..++       +.++++|+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            5678899999999999999999998875       4457776643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.94  E-value=5.1e-06  Score=73.45  Aligned_cols=35  Identities=26%  Similarity=0.194  Sum_probs=32.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl   97 (219)
                      +..|+|+||+||||||++..|+++++.++|+.|++
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            35799999999999999999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.89  E-value=3.6e-05  Score=62.68  Aligned_cols=116  Identities=12%  Similarity=0.013  Sum_probs=62.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCC-CeeccchhHHhhcCCC---ch----hHHHHHHHHHcCCcccHH--------HHHH
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPED--------VIFA  129 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~-~~Is~~dllr~~~~~~---s~----lg~~i~~~l~~g~~ip~e--------~i~~  129 (219)
                      |+|+||+||||||+++.|.+++.- ..++..-.-|....+.   ..    .-++..+.+++|..+--.        +...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~   83 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence            789999999999999999988632 2333333333322211   00    123455556666533210        1112


Q ss_pred             HHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhC--CCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          130 LLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCY--TMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       130 Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~--~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      -+.+.+.+     +..+|+|.-+..   +..+....  .+..++.+--+.+++       .+|+.+|..
T Consensus        84 ~v~~~l~~-----g~~vil~id~~g---~~~~k~~~~~~~~~Ifi~pps~e~L-------~~RL~~Rg~  137 (186)
T 1ex7_A           84 SVKQVSKS-----GKTCILDIDMQG---VKSVKAIPELNARFLFIAPPSVEDL-------KKRLEGRGT  137 (186)
T ss_dssp             HHHHHHHH-----TSEEEEECCHHH---HHHHHTCGGGCCEEEEEECSCHHHH-------HHHHHHHCC
T ss_pred             eeeehhhC-----CCEEEecCCHHH---HHHHHHhcccCceEEEEeCCCHHHH-------HHHHHhcCC
Confidence            22334443     356888876433   33343322  233344444456788       899998864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.87  E-value=3.1e-06  Score=73.30  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR   99 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr   99 (219)
                      +++.|.|.|++||||||+++.|++.++     +++|++|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567899999999999999999999887     89999999875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.76  E-value=2.3e-05  Score=67.56  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ..|..++|.||||+|||++++.+|+.+|.+++.+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v   67 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM   67 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            4556788899999999999999999999887755

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.74  E-value=1.8e-05  Score=67.10  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      +.|.|+|++||||||+++.|.+.+|++++++++-+++++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~   40 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence            578999999999999999999999999999998877765

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.71  E-value=1.6e-05  Score=70.65  Aligned_cols=34  Identities=21%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl   97 (219)
                      ..|+|.||+||||||++..|++.++..+|++|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            4789999999999999999999999999999886

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.67  E-value=8.2e-05  Score=70.06  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC------CCeeccchh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSL   97 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg------~~~Is~~dl   97 (219)
                      ++..|+|+|++||||||+++.|+..++      +.+++.+++
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            567899999999999999999999884      334665554

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.64  E-value=3.2e-05  Score=68.10  Aligned_cols=35  Identities=31%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      .+..|+|.||+||||||++..|+++++.++||.|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            45678899999999999999999999999999876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.60  E-value=3.4e-05  Score=68.09  Aligned_cols=35  Identities=26%  Similarity=0.158  Sum_probs=32.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL   97 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dl   97 (219)
                      +..|+|.||+||||||++..|+++++..+||.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            45788999999999999999999999999998875

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=97.60  E-value=8.9e-05  Score=64.93  Aligned_cols=106  Identities=9%  Similarity=-0.096  Sum_probs=64.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~  137 (219)
                      ..++.|+|.|..||||+|+.++|.+.++=   .++.+.          .|.++++.              ..++...+..
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~--------------~~yl~R~~~~  139 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG--------------QWYFQRYVAT  139 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT--------------SCTTHHHHTT
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh--------------chHHHHHHHh
Confidence            36899999999999999999999998844   344331          12122211              1122223333


Q ss_pred             ccccCCCeEEEeCccCC------------HH-------HHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          138 GYYRGESGFILDGIPRT------------RI-------QAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       138 ~~~~~~~g~IlDG~Pr~------------~~-------qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      . ...+.-+|+|.+..+            ..       +...|+.    ...|++.|+|++++++.       .+|+.+|
T Consensus       140 L-P~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq-------~kR~~~R  211 (304)
T 3czq_A          140 F-PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ-------LKRFHDR  211 (304)
T ss_dssp             C-CCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH-------HHHHHHH
T ss_pred             c-ccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH-------HHHHHHh
Confidence            2 123455788855321            11       1111211    23689999999999999       9999877


Q ss_pred             CCCC
Q 027791          195 SLCL  198 (219)
Q Consensus       195 ~~~~  198 (219)
                      ...+
T Consensus       212 ~~dp  215 (304)
T 3czq_A          212 RHDP  215 (304)
T ss_dssp             HHCT
T ss_pred             hcCc
Confidence            5444

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.55  E-value=7.7e-05  Score=63.55  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+..++|+||||+|||++++.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345569999999999999999999987

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.52  E-value=7.4e-05  Score=61.95  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +.-++|+||||+|||++++.++++++.+++.+
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            34588999999999999999999999887754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=5.5e-05  Score=69.30  Aligned_cols=33  Identities=15%  Similarity=0.243  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            456799999999999999999999999987755

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.50  E-value=8.3e-05  Score=62.02  Aligned_cols=30  Identities=23%  Similarity=0.515  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      -++|+||||+||||+++.++..++.+++.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            488999999999999999999998877654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.49  E-value=6.5e-05  Score=68.88  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-|+|+||||+|||++|+.+|.+++++++.+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            456789999999999999999999999988754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.48  E-value=6.9e-05  Score=68.54  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            44589999999999999999999999988765

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.46  E-value=5.6e-05  Score=67.66  Aligned_cols=30  Identities=27%  Similarity=0.453  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      ..+.|+|+|+|||||||+++.|++.+++++
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            345799999999999999999999999888

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.45  E-value=6.6e-05  Score=68.22  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +.-|+|+||||+|||++|+.+|.+++.+++++
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            44589999999999999999999999988765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.44  E-value=0.00011  Score=64.80  Aligned_cols=32  Identities=34%  Similarity=0.564  Sum_probs=28.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +..++|.||||+|||++|+.|++.++.+++.+
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            44589999999999999999999999988865

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.43  E-value=9.5e-05  Score=58.79  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++..++|+||+||||||+++.|+..+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4566899999999999999999998763

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.41  E-value=0.001  Score=52.33  Aligned_cols=32  Identities=28%  Similarity=0.222  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      ++-.+.++|++||||||+++.+.  .+..+++.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d   39 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD   39 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH
Confidence            56788999999999999999854  344555543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.41  E-value=0.0001  Score=62.62  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..++|+||||+||||+++.+++.++.+++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i   85 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI   85 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            345689999999999999999999998776643

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.39  E-value=0.00011  Score=61.95  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +..++|+||||+|||++++.+++.++.+++.+
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34589999999999999999999999887654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.39  E-value=0.00011  Score=63.29  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +..++|+||||+||||+++.++..++.+++.+
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v   80 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQANFISI   80 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence            45689999999999999999999998877755

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.37  E-value=0.00014  Score=61.29  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ..+..++|+||||+|||++++.+++.++.+++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3556799999999999999999999999987755

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.36  E-value=0.00015  Score=57.25  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc----CC--CeeccchhHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL----EV--PHISMGSLVR   99 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l----g~--~~Is~~dllr   99 (219)
                      +..++|+||||+||||+++.++..+    |.  .+++..+++.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~   80 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF   80 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            5678999999999999999999876    43  4455555443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.35  E-value=0.00015  Score=62.93  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..++|+||||+|||++++.++++++.+++.+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            345799999999999999999999998877754

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.34  E-value=0.0001  Score=67.03  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      ..|+|.||+||||||++..|+++++..+||+|.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            568899999999999999999999999999876

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00011  Score=67.93  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            456789999999999999999999999988755

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.00013  Score=66.85  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-|+|+||||+|||++|+.+|.+++.+++.+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            345699999999999999999999999987765

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.33  E-value=0.00016  Score=66.44  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .+..|+|+||||+||||+++.||+.++.+++..+
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            3456999999999999999999999999998765

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.33  E-value=0.00015  Score=61.37  Aligned_cols=32  Identities=34%  Similarity=0.491  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +..++|+||||+|||++++.+++.++.+++.+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i   81 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            34588999999999999999999998877644

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.30  E-value=0.00017  Score=63.66  Aligned_cols=33  Identities=30%  Similarity=0.436  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      +..++|+||||+|||++++.|++.++.+++..+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            345899999999999999999999998887653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.30  E-value=0.00017  Score=62.49  Aligned_cols=38  Identities=26%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dll   98 (219)
                      .++..|.|+|++||||||+++.|+..++       +.+|++++..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence            4678899999999999999999999876       5667776643

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.30  E-value=0.00013  Score=68.09  Aligned_cols=28  Identities=18%  Similarity=0.092  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .++.|+|+|.+||||||+++.|+++++.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            5588999999999999999999999986

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.28  E-value=0.00018  Score=61.40  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=25.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++|+||||+||||+++.|+..++...+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i   75 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISV   75 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence            89999999999999999999998766544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.24  E-value=0.00024  Score=54.93  Aligned_cols=25  Identities=36%  Similarity=0.565  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..++|+|+||+|||++++.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4458899999999999999999986

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.20  E-value=0.00011  Score=61.48  Aligned_cols=29  Identities=34%  Similarity=0.566  Sum_probs=26.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++|+||||+|||++++.++++++.+++.+
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            78999999999999999999998877654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.19  E-value=0.00021  Score=55.40  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..++|+|+||+||||+++.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4457899999999999999999987

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.18  E-value=0.00073  Score=62.90  Aligned_cols=107  Identities=12%  Similarity=-0.099  Sum_probs=59.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC---CeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~---~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~  137 (219)
                      ..++.|+|.|..||||+|+.++|.+.++=   .++.+..          |...+.      +        ...+.....+
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E~------~--------~~yl~R~~~~   96 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEEL------E--------RPPQWRFWRR   96 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHHH------T--------SCTTHHHHHH
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhc------c--------CChhhhHHHh
Confidence            47799999999999999999999999844   3443311          111110      0        1122334444


Q ss_pred             ccccCCCeEEEeCccC------------CHH-------HHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          138 GYYRGESGFILDGIPR------------TRI-------QAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       138 ~~~~~~~g~IlDG~Pr------------~~~-------qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .. ..+.-+|+|.+..            +.+       +...|+.    ...+++.++|+++.+..       .+|+.+|
T Consensus        97 lP-~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq-------~kRl~~R  168 (500)
T 3czp_A           97 LP-PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQL-------KERLKAL  168 (500)
T ss_dssp             CC-CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHH-------HHCC---
T ss_pred             CC-CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHH-------HHHHHHH
Confidence            32 2334466675421            111       1111211    13578999999999999       9999998


Q ss_pred             CCCCC
Q 027791          195 SLCLT  199 (219)
Q Consensus       195 ~~~~~  199 (219)
                      ...+.
T Consensus       169 ~~~p~  173 (500)
T 3czp_A          169 EKDPQ  173 (500)
T ss_dssp             -----
T ss_pred             hcCCc
Confidence            76553

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.17  E-value=0.00028  Score=58.69  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=26.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++|+||||+||||+++.++..++.+.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            89999999999999999999988776654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.16  E-value=0.00027  Score=61.67  Aligned_cols=37  Identities=24%  Similarity=0.268  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-CCCee--ccchhH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHI--SMGSLV   98 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~I--s~~dll   98 (219)
                      .+.-|+|+||||+|||++++.+++++ +.+++  +..+++
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~   83 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV   83 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence            34568899999999999999999998 66554  344443

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.14  E-value=0.00024  Score=62.72  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +..|+|+||||+|||++++.+++.++.+++.+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            34588999999999999999999999887654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.13  E-value=0.0003  Score=60.81  Aligned_cols=39  Identities=13%  Similarity=0.055  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCee-ccchhHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHI-SMGSLVR   99 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~I-s~~dllr   99 (219)
                      .++..|.|.|++||||||+++.|++.++       ...+ +.|+.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~   75 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   75 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence            4678899999999999999999999875       3445 7777543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.12  E-value=0.00034  Score=63.81  Aligned_cols=32  Identities=34%  Similarity=0.493  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcC--CCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg--~~~Is~   94 (219)
                      +..++|.||||+|||++|+.+|+.++  ++++.+
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            35689999999999999999999998  777654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.11  E-value=0.00025  Score=57.33  Aligned_cols=37  Identities=11%  Similarity=-0.059  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV   98 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dll   98 (219)
                      .+..++|.||||+||||+++.+++.++     +.+++..++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            456789999999999999999998764     3455555543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.10  E-value=0.00037  Score=60.18  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      ..++|+|+||+|||++++.+++.++.+++...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            45899999999999999999999999887653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.08  E-value=0.00028  Score=58.45  Aligned_cols=35  Identities=26%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      -.+..|+|+||+|+||||++..|+++.+ .+|+.|.
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            3567799999999999999999998877 7777654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.07  E-value=0.00036  Score=61.59  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..++|+||||+|||++++.+++.++.+++.+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i  148 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI  148 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence            455789999999999999999999999877644

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.07  E-value=0.00031  Score=56.30  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +++.|+||+||||||+.+.|+..+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            478999999999999999999988743

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.04  E-value=0.00043  Score=60.43  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ..++|+||||+||||+++.++..++.++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~   80 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIH   80 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            45889999999999999999999987654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.02  E-value=0.00045  Score=61.44  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..++|+||||+|||++++.++++++.+++.+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            346799999999999999999999999887754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.01  E-value=0.00047  Score=58.26  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=26.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++|+||||+||||+++.|+..++.+.+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            89999999999999999999988776655

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.99  E-value=0.00045  Score=52.93  Aligned_cols=28  Identities=21%  Similarity=0.230  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL---EVPHI   92 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l---g~~~I   92 (219)
                      .|+|.|+||+|||++|+.|++..   +.+++
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            38999999999999999999865   44544

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.99  E-value=0.00068  Score=54.16  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..++|.|+||+||||+++.++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999877

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.96  E-value=0.00064  Score=55.80  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++..|+|+||+||||||+.+.|.+.+.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3566789999999999999999998875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.93  E-value=0.00065  Score=62.85  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      -++|+||||+||||+++.++.+.+.+++.+
T Consensus        51 gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            388999999999999999999999988765

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.91  E-value=0.00062  Score=63.04  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..++|.||||+||||+++.+++.++++++.+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            345789999999999999999999999887754

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=96.91  E-value=0.00084  Score=62.52  Aligned_cols=106  Identities=8%  Similarity=-0.035  Sum_probs=65.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~  137 (219)
                      ..++.|+|.|..||||+|+.++|.+.+   |+.++.+..          |...+              .....+...+.+
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E--------------~~~~yl~R~~~~  353 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEE--------------RAQPYLWRFWRH  353 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHH--------------HTSCTTHHHHTT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhh--------------hcchHHHHHHHh
Confidence            478999999999999999999999988   444444321          11111              111122334444


Q ss_pred             ccccCCCeEEEeCccCC------------HH-------HHHHHH----hhCCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          138 GYYRGESGFILDGIPRT------------RI-------QAVSLE----FCYTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       138 ~~~~~~~g~IlDG~Pr~------------~~-------qa~~l~----~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .. ..+.-+|+|.+..+            .+       +...|+    ..+.+++.++|+++.++.       .+|+.+|
T Consensus       354 lP-~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ-------~~R~~~R  425 (500)
T 3czp_A          354 IP-ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQ-------MERFKER  425 (500)
T ss_dssp             CC-CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHH-------HHHHHHH
T ss_pred             CC-CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHH-------HHHHHHH
Confidence            32 23455788854321            12       111121    113578999999999999       9999888


Q ss_pred             CCCC
Q 027791          195 SLCL  198 (219)
Q Consensus       195 ~~~~  198 (219)
                      ...+
T Consensus       426 ~~~p  429 (500)
T 3czp_A          426 EKTP  429 (500)
T ss_dssp             HHSS
T ss_pred             hcCC
Confidence            6544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.91  E-value=0.00044  Score=67.81  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .|.-|+|+||||+|||++++.+|.++|.+++.+
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            456799999999999999999999999988765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.85  E-value=0.00056  Score=55.28  Aligned_cols=27  Identities=22%  Similarity=0.143  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++..+.|+||+||||||+.+.|...+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            345688999999999999999998763

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.84  E-value=0.00071  Score=61.59  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-CCCee--ccchhHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHI--SMGSLVR   99 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-g~~~I--s~~dllr   99 (219)
                      .+.-|+|+||||+|||++++.++..+ +.+++  +..+++.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            34678999999999999999999998 66554  4444443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.82  E-value=0.0008  Score=57.11  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..++|+||||+||||+++.|++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            368999999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.80  E-value=0.00045  Score=53.71  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..++|+|++|+||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45578899999999999999999877

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.79  E-value=0.00083  Score=57.86  Aligned_cols=31  Identities=13%  Similarity=-0.015  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc---CCCeec
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL---EVPHIS   93 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is   93 (219)
                      +..++|+||||+||||+++.++..+   +.+++.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~   70 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY   70 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence            3458899999999999999999987   665543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.77  E-value=0.001  Score=53.04  Aligned_cols=26  Identities=31%  Similarity=0.355  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ..++|.|+||+||||+++.+++.++.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            46889999999999999999998754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.77  E-value=0.00078  Score=57.51  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      ..++|.|+||+||||+++.+++.++.+++.
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~   68 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRV   68 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            348899999999999999999999887653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.76  E-value=0.00053  Score=56.32  Aligned_cols=26  Identities=35%  Similarity=0.325  Sum_probs=17.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH-HHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLS-KLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La-~~l   87 (219)
                      ++..+.|+||+||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45678999999999999999999 765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.75  E-value=0.001  Score=57.91  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC--Ceec
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHIS   93 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is   93 (219)
                      +..++|.||||+|||++++.+++.++.  +++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~  102 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA  102 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcccCCccc
Confidence            467999999999999999999999874  5443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.75  E-value=0.00095  Score=59.92  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      .++..++|.|||||||||+++.|+..++..++.
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            355688999999999999999999998877665

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.72  E-value=0.00068  Score=58.50  Aligned_cols=29  Identities=24%  Similarity=0.444  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      .++|+||||+|||++++.+++.++.+++.
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~~   76 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFHR   76 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            48999999999999999999999877653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.71  E-value=0.00082  Score=55.90  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .-.++|.||||+||||+|..|++.+...+++.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~f   89 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   89 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence            34589999999999999999999886655543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.00094  Score=52.73  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++|+|+||+|||++++.+++.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999876

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.66  E-value=0.0012  Score=60.34  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      ..++|.||||+||||+++.|++.++.+++.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            46899999999999999999999988776553

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.66  E-value=0.0013  Score=57.29  Aligned_cols=34  Identities=12%  Similarity=0.172  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----------CCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----------EVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----------g~~~Is~~   95 (219)
                      .+..++|.||||+||||+++.+++.+           +.+++.++
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            34579999999999999999999987           77666553

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.64  E-value=0.00085  Score=54.36  Aligned_cols=25  Identities=16%  Similarity=0.027  Sum_probs=22.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      ++|+|++||||||+|+.|++. +.++
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            789999999999999999987 7654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.64  E-value=0.0012  Score=61.07  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-++|+||||+|||++++.++.+++.+++.+
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            344589999999999999999999998877754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.64  E-value=0.0009  Score=57.96  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..++|+||||+||||+++.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999987

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.64  E-value=0.00038  Score=53.31  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=23.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      |+|.|+||+|||++|+.+++..+ +++.
T Consensus        30 vll~G~~GtGKt~lA~~i~~~~~-~~~~   56 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKNGT-PWVS   56 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred             EEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence            88999999999999999998776 4443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.63  E-value=0.0012  Score=61.29  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=26.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++|+||||+||||+++.|+..++.+++.+
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~~~~i~i   95 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEARVPFITA   95 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            89999999999999999999998877755

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.61  E-value=0.0011  Score=56.83  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      +..+++.||||+||||+++.+++.++.+++.++
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            345777888999999999999999988777553

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.60  E-value=0.0019  Score=50.82  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=25.1

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+....+|+|+|.+|+||||+..+|...
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            334456789999999999999999999764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.59  E-value=0.0016  Score=59.59  Aligned_cols=26  Identities=38%  Similarity=0.577  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....++|+|+||+|||++++.|++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999997

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.58  E-value=0.0015  Score=52.80  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++-.+.|+||+||||||+.+.|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4567889999999999999999998763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.57  E-value=0.0014  Score=56.69  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc------CCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l------g~~~Is~   94 (219)
                      .+..++|+|+||+||||+++.+++.+      +.+++..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i   82 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI   82 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            44578899999999999999999987      6666644

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.57  E-value=0.0014  Score=61.36  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++..++|+||||+||||+++.|+..++.+.+.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            566899999999999999999999987765543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.56  E-value=0.0013  Score=53.88  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||+||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45678899999999999999999876

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.55  E-value=0.0012  Score=51.45  Aligned_cols=28  Identities=11%  Similarity=0.089  Sum_probs=21.7

Q ss_pred             CCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           58 SPPRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        58 ~~~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+.+..+|+|+|.+|+||||+..+|..
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence            3345778999999999999999999975

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.54  E-value=0.0016  Score=51.06  Aligned_cols=28  Identities=25%  Similarity=0.269  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+..+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            3456789999999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.54  E-value=0.0017  Score=53.73  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++-.++|+||+||||||+.+.|+..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4567899999999999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.51  E-value=0.0011  Score=65.13  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHhh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQE  101 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~~  101 (219)
                      .+.-++|+||||+|||.+|+.+|.+.+.+++++  .+++...
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~  551 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW  551 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence            345689999999999999999999999988865  4555544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.48  E-value=0.0018  Score=51.31  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....+|+|+|++||||||+.++++...
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence            345789999999999999999998643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.48  E-value=0.002  Score=56.23  Aligned_cols=27  Identities=26%  Similarity=0.132  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|.|++||||||+++.|+..+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            567889999999999999999999876

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.0011  Score=58.22  Aligned_cols=27  Identities=7%  Similarity=0.124  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..++|.||||+|||++++.+++++
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            356778999999999999999999988

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.42  E-value=0.0026  Score=49.49  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      -+..+|+|+|++|+||||+..+|..
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3568999999999999999999986

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.41  E-value=0.0021  Score=53.56  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++|+|+||+|||++++.+++..+
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcC
Confidence            488999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.40  E-value=0.0026  Score=50.09  Aligned_cols=27  Identities=7%  Similarity=0.036  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +.+..+|+|+|.+|+||||+..++...
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            356689999999999999999888764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.39  E-value=0.0021  Score=51.77  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+||+||||||+++.|+-.+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998744

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.39  E-value=0.0023  Score=51.25  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..+.|.|++||||||++..|...+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            35578899999999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.36  E-value=0.0026  Score=55.26  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..++|+||||+||||+++.++..+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999988

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.34  E-value=0.0023  Score=51.19  Aligned_cols=27  Identities=22%  Similarity=0.063  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++-.++|.|+|||||||++..++...+
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~   45 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGLLSG   45 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence            566789999999999999999987433

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.32  E-value=0.0026  Score=51.08  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|+|+|||||||++..++..+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999998543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.32  E-value=0.0034  Score=47.70  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..++...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.31  E-value=0.0028  Score=61.15  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc----------CCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL----------EVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l----------g~~~Is~   94 (219)
                      .+..++|+||||+|||++++.|++.+          +..++..
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~  242 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL  242 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence            44568999999999999999999997          6666655

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.29  E-value=0.0026  Score=49.95  Aligned_cols=28  Identities=11%  Similarity=0.178  Sum_probs=23.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+..+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcC
Confidence            3456789999999999999999999853

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.28  E-value=0.0026  Score=49.64  Aligned_cols=28  Identities=18%  Similarity=0.192  Sum_probs=23.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+....+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456789999999999999999999864

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.28  E-value=0.0029  Score=51.74  Aligned_cols=26  Identities=15%  Similarity=0.181  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .-+|+++++|+||||||+.+..+...
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            35689999999999999999886544

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.27  E-value=0.0028  Score=50.81  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..++++|+||+||||.+..++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999997777665

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.27  E-value=0.0023  Score=55.03  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=21.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++|+||||+||||+++.+++.++
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.25  E-value=0.0016  Score=56.08  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=21.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++|+|+||+|||++++.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            89999999999999999999886

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.24  E-value=0.0026  Score=55.24  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ++|+||||+||||+++.++..+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            899999999999999999998743

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.23  E-value=0.0031  Score=47.72  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence            45689999999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.23  E-value=0.003  Score=49.39  Aligned_cols=28  Identities=21%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3456789999999999999999999753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.21  E-value=0.0035  Score=54.32  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcC----CCe--eccchhHHh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLE----VPH--ISMGSLVRQ  100 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg----~~~--Is~~dllr~  100 (219)
                      +..++|.||||+|||+++..++..+.    .++  ++..+++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            45788999999999999999998553    444  455555443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.20  E-value=0.004  Score=48.94  Aligned_cols=26  Identities=19%  Similarity=0.278  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45678999999999999999999877

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.20  E-value=0.0032  Score=48.46  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Confidence            45689999999999999999999864

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.19  E-value=0.0032  Score=53.31  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++|.||||+||||+++.+++.+.
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            489999999999999999999864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.18  E-value=0.0035  Score=60.35  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             CCCCe-EEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhH
Q 027791           60 PRRGV-QWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLV   98 (219)
Q Consensus        60 ~~~~~-~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dll   98 (219)
                      +.++. .++|+||||+|||++++.|++.++.+++  ++.++.
T Consensus       484 ~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~  525 (758)
T 1r6b_X          484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM  525 (758)
T ss_dssp             TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence            33443 6899999999999999999999986655  444443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.17  E-value=0.0034  Score=54.23  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++|+||+|+||||+++.|+..+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999965

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.17  E-value=0.0038  Score=54.02  Aligned_cols=28  Identities=29%  Similarity=0.307  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +..++|.||||+||||+++.+++.++..
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3468899999999999999999988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.15  E-value=0.0033  Score=50.32  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+..+|+|+|.+|+||||+..+|..
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhc
Confidence            35678999999999999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.15  E-value=0.0026  Score=49.83  Aligned_cols=28  Identities=14%  Similarity=0.100  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+..+|+|+|.+|+||||+..+|....
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4567899999999999999999987543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.14  E-value=0.0033  Score=57.10  Aligned_cols=25  Identities=12%  Similarity=0.197  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..++|+||||+||||+++.++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999977

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.12  E-value=0.0034  Score=51.03  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|+|||||||++..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5668899999999999999999984

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.11  E-value=0.0034  Score=48.97  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      -+..+|+|+|.+|+||||+..+|....
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCC
Confidence            356899999999999999999998653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.11  E-value=0.0041  Score=48.92  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +.+..+|+|+|.+|+||||+..+|...
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence            356689999999999999999999764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.10  E-value=0.0034  Score=50.77  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++.|+|++||||||+.+.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58899999999999999999877

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.09  E-value=0.0035  Score=49.05  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=22.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+....+|+|+|.+|+||||+..+|..
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            346778999999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.08  E-value=0.0057  Score=46.83  Aligned_cols=26  Identities=15%  Similarity=0.164  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+..+|+|+|.+|+||||+..+|..
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            35778999999999999999999975

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.07  E-value=0.0062  Score=47.22  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            46789999999999999999999875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.07  E-value=0.0042  Score=46.65  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|++|+||||+..++...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999998764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.03  E-value=0.0037  Score=52.72  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++|+||||+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            8999999999999999999986

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.01  E-value=0.0044  Score=46.39  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+++|.+|+||||+..++...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.01  E-value=0.0045  Score=50.32  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.++|.|+||+||||++..++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567889999999999999888764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.01  E-value=0.0048  Score=53.68  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+|++||||||++..||..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            456788999999999999999999876

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.00  E-value=0.0043  Score=49.18  Aligned_cols=26  Identities=23%  Similarity=0.143  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            56789999999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.00  E-value=0.0046  Score=48.60  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..++...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            46689999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.99  E-value=0.0056  Score=46.87  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            4668999999999999999999975

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.99  E-value=0.0052  Score=53.99  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+||+||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999865

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.98  E-value=0.0044  Score=49.75  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .....+|+|+|.+|+||||+..+|...
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhC
Confidence            346689999999999999999999764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.97  E-value=0.0054  Score=51.99  Aligned_cols=27  Identities=15%  Similarity=0.198  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+||+||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            356689999999999999999998865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.96  E-value=0.0046  Score=53.91  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      .++-.+.|+||+||||||+++.|+..+...++
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~  155 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL  155 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence            35678999999999999999999988744443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.96  E-value=0.0053  Score=49.04  Aligned_cols=25  Identities=16%  Similarity=0.020  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ...+.|.|++||||||+.+.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4578899999999999999998864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.95  E-value=0.0052  Score=49.13  Aligned_cols=27  Identities=11%  Similarity=0.001  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..+|+|+|++|+||||+..+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            466889999999999999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.94  E-value=0.0056  Score=45.96  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++|+|+|++|+||||+..++....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.94  E-value=0.0052  Score=48.59  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +.+..+|+|+|.+|+||||+..+|...
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999999999753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.92  E-value=0.0053  Score=46.97  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|++|+||||+..+|...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            45689999999999999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.91  E-value=0.0064  Score=46.48  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            46689999999999999999999875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.91  E-value=0.0054  Score=46.72  Aligned_cols=24  Identities=38%  Similarity=0.481  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ...+|+|+|.+|+||||+..+|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            457899999999999999999874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.90  E-value=0.0058  Score=46.88  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+..+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence            356789999999999999999999764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.89  E-value=0.0048  Score=52.15  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=21.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++|.||||+||||+++.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999999986

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.89  E-value=0.0056  Score=46.73  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....+|+|+|.+|+||||+..+|...-
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence            456899999999999999999998643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.88  E-value=0.0054  Score=46.51  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..++...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45689999999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.88  E-value=0.0068  Score=47.31  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .....+|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcC
Confidence            346689999999999999999999764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.87  E-value=0.0053  Score=47.69  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++.+|+|+|.||+||||+..+|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999854

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.87  E-value=0.0058  Score=45.94  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.87  E-value=0.0055  Score=52.00  Aligned_cols=26  Identities=12%  Similarity=0.193  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|.|+||+||||++..|+-.+
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56678999999999999999988754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.0063  Score=47.51  Aligned_cols=27  Identities=11%  Similarity=0.001  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..+|+|+|++|+||||+...|....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            466899999999999999999998653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.87  E-value=0.0068  Score=52.72  Aligned_cols=30  Identities=17%  Similarity=0.189  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      .+..++|.||||+||||+++.+++.+....
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            345699999999999999999999987654

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=95.86  E-value=0.013  Score=50.73  Aligned_cols=32  Identities=6%  Similarity=0.039  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ..++.|+|.|..||||+++.++|.+.++=..+
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~  104 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGV  104 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGE
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCce
Confidence            47899999999999999999999999854333

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.86  E-value=0.0051  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ....+|+|+|.+|+||||+..+|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4668999999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.84  E-value=0.0055  Score=47.04  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+|+|+|++|+||||+..+|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999975

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.84  E-value=0.0068  Score=58.49  Aligned_cols=41  Identities=27%  Similarity=0.558  Sum_probs=30.2

Q ss_pred             CCCCe-EEEEEcCCCCChHHHHHHHHHHc---CCC--eeccchhHHh
Q 027791           60 PRRGV-QWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQ  100 (219)
Q Consensus        60 ~~~~~-~Ivl~G~PGSGKST~a~~La~~l---g~~--~Is~~dllr~  100 (219)
                      |.+|. .++|+||||+|||++|+.|++.+   +.+  .+++.++...
T Consensus       517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~  563 (758)
T 3pxi_A          517 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK  563 (758)
T ss_dssp             TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence            34444 68999999999999999999986   334  4555555443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.84  E-value=0.0062  Score=52.87  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999766

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.84  E-value=0.0058  Score=48.38  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+|+|+|++|+||||+.++|...
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3478999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.83  E-value=0.0069  Score=48.59  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +...|+|+|.+|+||||+..+|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.83  E-value=0.0059  Score=46.18  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+|+|+|++|+||||+..++...
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhC
Confidence            3578999999999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.82  E-value=0.0056  Score=47.24  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..+|+|+|.+|+||||+..+|....
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence            56899999999999999999998643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.81  E-value=0.0065  Score=47.36  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            45689999999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.81  E-value=0.0044  Score=47.80  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      .+..+|+|+|++|+||||+..++.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999999886

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.80  E-value=0.0068  Score=52.53  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            466789999999999999999999875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.80  E-value=0.0057  Score=46.79  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|++|+||||+..++...
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcC
Confidence            35679999999999999999999754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.80  E-value=0.0066  Score=46.87  Aligned_cols=26  Identities=19%  Similarity=0.268  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999863

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.79  E-value=0.0065  Score=45.80  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|.+|+||||+..++...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999999863

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.79  E-value=0.0066  Score=47.41  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      |....+|+|+|++|+||||+..++...
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999999998754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.78  E-value=0.007  Score=50.39  Aligned_cols=27  Identities=15%  Similarity=-0.103  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..++++|+||+||||.+-.++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            456789999999999999999988877

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.77  E-value=0.0041  Score=49.19  Aligned_cols=28  Identities=11%  Similarity=-0.052  Sum_probs=21.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+.+..+|+|+|.+|+||||+.+++..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence            3467789999999999999999887654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.76  E-value=0.0057  Score=48.16  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ....+|+|+|.+|+||||+..+|..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.76  E-value=0.0065  Score=45.94  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +..+|+|+|.+|+||||+..+|..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            357899999999999999999975

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.75  E-value=0.005  Score=46.50  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            35679999999999999999999863

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.75  E-value=0.0059  Score=46.06  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|++|+||||+..++...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.74  E-value=0.0095  Score=46.14  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            45678999999999999999999764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.74  E-value=0.0061  Score=46.51  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcC
Confidence            35589999999999999999999753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.73  E-value=0.0066  Score=46.59  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            45689999999999999999999764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.72  E-value=0.0063  Score=46.01  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      ..+|+|+|.+|+||||+..++.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHc
Confidence            4689999999999999999985

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.72  E-value=0.0078  Score=48.44  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..+|+|+|.+|+||||+..+|+..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.71  E-value=0.0056  Score=51.01  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            5567899999999999999999753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.71  E-value=0.0065  Score=45.96  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..+|+|+|++|+||||+..+|....
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            55799999999999999999998653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.70  E-value=0.0074  Score=52.12  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..+.|+|++|+||||++..|+..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356788899999999999999999755

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.69  E-value=0.0088  Score=46.15  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45689999999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.68  E-value=0.0084  Score=48.65  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999999865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.66  E-value=0.0067  Score=49.74  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...++|+|+|.+|+||||+...|...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            45689999999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.66  E-value=0.0095  Score=47.19  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..++...
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            46689999999999999999999864

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.65  E-value=0.0092  Score=51.17  Aligned_cols=27  Identities=15%  Similarity=0.135  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .-.++|.||||+|||+++..|+..++.
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            345899999999999999999997543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.63  E-value=0.0067  Score=52.29  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .|+|+|+||+|||++|+.|++..
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHS
T ss_pred             cEEEECCCCchHHHHHHHHHHhC
Confidence            48899999999999999999854

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.62  E-value=0.0079  Score=45.61  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.+|+||||+..++..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999999863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.61  E-value=0.0062  Score=50.32  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4557889999999999999999753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.61  E-value=0.0067  Score=53.42  Aligned_cols=28  Identities=14%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +.++.|+|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999999987654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.60  E-value=0.0064  Score=53.72  Aligned_cols=32  Identities=13%  Similarity=0.097  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc--CCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~   94 (219)
                      +..++|.||||+||||++..++...  .+.+++.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            3457899999999999999999764  3557776

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.60  E-value=0.0076  Score=47.93  Aligned_cols=26  Identities=23%  Similarity=0.241  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            45689999999999999999999753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.58  E-value=0.0062  Score=47.59  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|++|+||||+..++..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999975

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.58  E-value=0.0071  Score=51.00  Aligned_cols=25  Identities=24%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|+|||||||++..++..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            5678899999999999999999864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.57  E-value=0.0091  Score=54.54  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|+++|++||||||++..|+..+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            357888999999999999999999765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.57  E-value=0.0094  Score=52.30  Aligned_cols=27  Identities=37%  Similarity=0.526  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..+.|+|+|||||||+.+.|+..+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999998654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.57  E-value=0.0073  Score=47.91  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ....+|+|+|.+|+||||+..+|..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            4678999999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.56  E-value=0.007  Score=51.51  Aligned_cols=32  Identities=16%  Similarity=-0.048  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      ..++|.|++|+||||+++.+++..++.+++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            46889999999999999999999875566543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.56  E-value=0.0093  Score=52.46  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..+|.|+|+||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.54  E-value=0.007  Score=50.45  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5567899999999999999999754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.54  E-value=0.006  Score=59.79  Aligned_cols=25  Identities=36%  Similarity=0.565  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..++|+|+||+||||+++.+++++
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999987

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.53  E-value=0.0098  Score=52.40  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....|.|+|+|||||||+...|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.52  E-value=0.0092  Score=46.51  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45689999999999999999999753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.51  E-value=0.0084  Score=47.24  Aligned_cols=26  Identities=12%  Similarity=0.102  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|++|+||||+..++...
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.51  E-value=0.0099  Score=48.15  Aligned_cols=33  Identities=9%  Similarity=0.067  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .+.-|+|.|++|+||||++..|.+ .|...++-|
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD   47 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDD   47 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESS
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCC
Confidence            456799999999999999999987 577776543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.51  E-value=0.0045  Score=48.55  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ...++|+|+|.+|+||||+..+|...-
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            466899999999999999999998754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.49  E-value=0.0081  Score=50.14  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999998644

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.49  E-value=0.0083  Score=46.33  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            45689999999999999999999764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.48  E-value=0.01  Score=45.66  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +..+|+|+|.+|+||||+..++...
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            5679999999999999999999753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.46  E-value=0.014  Score=53.52  Aligned_cols=26  Identities=15%  Similarity=0.318  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +|..|+|.|++|+||||++..||..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.46  E-value=0.0053  Score=48.69  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .++.+|+|+|++||||||+.+.|..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4667899999999999999998864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.46  E-value=0.0081  Score=58.87  Aligned_cols=28  Identities=32%  Similarity=0.534  Sum_probs=23.9

Q ss_pred             CCCC-eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           60 PRRG-VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        60 ~~~~-~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |.+| ..++|+||||+|||++|+.|++.+
T Consensus       584 ~~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          584 PNRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3344 378899999999999999999987

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.45  E-value=0.011  Score=52.69  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            467789999999999999999999876

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.011  Score=46.40  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45689999999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.43  E-value=0.0087  Score=50.10  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      -.+.|+||.||||||+.+.|+-.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            568899999999999999998543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.43  E-value=0.0082  Score=50.84  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55678899999999999999998543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.42  E-value=0.01  Score=46.00  Aligned_cols=26  Identities=12%  Similarity=0.219  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..++...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999753

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.41  E-value=0.013  Score=49.22  Aligned_cols=35  Identities=20%  Similarity=0.079  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCe--eccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPH--ISMG   95 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~--Is~~   95 (219)
                      ...++|++.|+||+||||++-.++..+   |..+  ++++
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            345789999999999999988888765   5544  3553

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.41  E-value=0.011  Score=44.54  Aligned_cols=24  Identities=13%  Similarity=0.061  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+|+|+|.+|+||||+..++...-
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            378999999999999999997643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.41  E-value=0.011  Score=46.63  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....+|+|+|.+|+||||+..+|....
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence            466899999999999999999997643

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.41  E-value=0.0061  Score=56.59  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .++|+||||+|||++++.|+..++
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHh
Confidence            589999999999999999999774

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.40  E-value=0.0098  Score=47.72  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            46689999999999999999999874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.40  E-value=0.011  Score=45.27  Aligned_cols=26  Identities=23%  Similarity=0.232  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..++...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            45689999999999999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.39  E-value=0.014  Score=48.07  Aligned_cols=27  Identities=19%  Similarity=0.356  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+...+++.|.+|+||||++..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            466788999999999999999999765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.39  E-value=0.01  Score=45.95  Aligned_cols=27  Identities=11%  Similarity=-0.039  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....+|+|+|.+|+||||+.+.+...+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence            456899999999999999998887654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.38  E-value=0.013  Score=45.64  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ....+|+|+|.+|+||||+..+|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3568999999999999999999976

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.38  E-value=0.053  Score=46.87  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+.++|.||||+||||.++.|++..
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            5689999999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.37  E-value=0.0084  Score=50.97  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4567889999999999999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.37  E-value=0.011  Score=50.29  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5567899999999999999999863

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.37  E-value=0.0068  Score=49.66  Aligned_cols=24  Identities=17%  Similarity=0.026  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +-.+.|+||.||||||+.+.|+-.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            446889999999999999999853

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.35  E-value=0.0096  Score=46.56  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            35679999999999999999999865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.35  E-value=0.0082  Score=51.39  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45678899999999999999997543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.35  E-value=0.009  Score=50.78  Aligned_cols=26  Identities=31%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            55678899999999999999998543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.34  E-value=0.0049  Score=49.11  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+.|+|++||||||+++.|...|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.34  E-value=0.01  Score=49.77  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|+.||||||+.+.|+-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557889999999999999999863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.34  E-value=0.012  Score=52.45  Aligned_cols=26  Identities=12%  Similarity=0.146  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|+||+||||||+.+.|+..+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45679999999999999999999865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.33  E-value=0.012  Score=45.73  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999984

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.33  E-value=0.012  Score=46.42  Aligned_cols=25  Identities=12%  Similarity=0.213  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.+|+||||+..++..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            5678999999999999999999853

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.33  E-value=0.012  Score=46.49  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            46789999999999999999999753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.30  E-value=0.012  Score=47.32  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            46689999999999999999999764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.29  E-value=0.0094  Score=50.40  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            55688999999999999999998644

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.29  E-value=0.013  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++-.++|.|+||+|||++|..++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            566888999999999999988764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.29  E-value=0.0091  Score=49.81  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578899999999999999998543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.29  E-value=0.009  Score=50.34  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55678899999999999999997543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.29  E-value=0.0091  Score=50.12  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678899999999999999997643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.29  E-value=0.011  Score=46.84  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|++|+||||+..++..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.29  E-value=0.0093  Score=45.92  Aligned_cols=25  Identities=12%  Similarity=0.128  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            5679999999999999999999853

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.28  E-value=0.0095  Score=50.72  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55678999999999999999997644

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.27  E-value=0.0098  Score=50.29  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            55678899999999999999997543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.26  E-value=0.011  Score=52.06  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|+|||||||++..++-..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            66789999999999999999999876

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.26  E-value=0.0097  Score=49.28  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55678999999999999999998643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.25  E-value=0.012  Score=46.18  Aligned_cols=26  Identities=35%  Similarity=0.492  Sum_probs=21.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +.+..+|+|+|.+|+||||+..++..
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            45778999999999999999999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.25  E-value=0.015  Score=47.15  Aligned_cols=32  Identities=13%  Similarity=-0.109  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHI   92 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~I   92 (219)
                      .++..++++|++||||||.+-.++.++   |..++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~   40 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ   40 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence            346789999999999999999999887   55444

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.23  E-value=0.0085  Score=49.38  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568899999999999999997543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.23  E-value=0.0095  Score=45.73  Aligned_cols=25  Identities=12%  Similarity=0.112  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +..+|+|+|.+|+||||+..++...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            5689999999999999999999864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.20  E-value=0.013  Score=52.16  Aligned_cols=26  Identities=19%  Similarity=0.093  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+|||||||||++..++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.19  E-value=0.012  Score=46.16  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            45689999999999999999999764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.19  E-value=0.012  Score=46.02  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..++...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            46689999999999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.18  E-value=0.011  Score=45.70  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+||||+..++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            57999999999999999999753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.17  E-value=0.014  Score=56.22  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..++|+|+||+|||++++.|++.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999987

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.17  E-value=0.01  Score=51.11  Aligned_cols=25  Identities=12%  Similarity=-0.118  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|.|+||+||||++..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.16  E-value=0.014  Score=54.26  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.|.|+|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            467889999999999999999999765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.16  E-value=0.011  Score=50.11  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55678899999999999999997543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.14  E-value=0.012  Score=45.58  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcC
Confidence            35579999999999999999999764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.14  E-value=0.011  Score=49.81  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45578899999999999999987543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.12  E-value=0.015  Score=45.76  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            35679999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.11  E-value=0.011  Score=50.62  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45678899999999999999998543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.09  E-value=0.014  Score=46.80  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc
Confidence            4568999999999999999999974

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.06  E-value=0.017  Score=50.50  Aligned_cols=27  Identities=19%  Similarity=0.274  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+|++|+||||++..||..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456788899999999999999999866

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.06  E-value=0.015  Score=46.32  Aligned_cols=27  Identities=11%  Similarity=-0.071  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..+|+|+|.+|+||||+..+|....
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.03  E-value=0.012  Score=49.60  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557889999999999999999754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.01  E-value=0.016  Score=48.01  Aligned_cols=26  Identities=19%  Similarity=0.436  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..+|...
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCC
Confidence            45689999999999999999999753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.01  E-value=0.015  Score=48.80  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|+||+||||+..+|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.01  E-value=0.012  Score=46.78  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      ....+|+|+|.+|+||||+..++.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999999985

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.00  E-value=0.012  Score=55.39  Aligned_cols=26  Identities=31%  Similarity=0.604  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ..++|+||||+||||+++.|+..+..
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            46899999999999999999997753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.99  E-value=0.018  Score=50.44  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.++|+||+||||+...|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.98  E-value=0.017  Score=45.98  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..++...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            46689999999999999999999863

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.98  E-value=0.019  Score=48.80  Aligned_cols=27  Identities=15%  Similarity=0.041  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      ..++|.|++|+||||+++.++++.+..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~   57 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLP   57 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            378899999999999999999987543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.96  E-value=0.019  Score=50.99  Aligned_cols=34  Identities=12%  Similarity=0.068  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc----CCCeeccchh
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL----EVPHISMGSL   97 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l----g~~~Is~~dl   97 (219)
                      -.++|+||+||||||+.+.|+..+    +..++..+|-
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~  161 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP  161 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence            489999999999999999998765    3444555443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.94  E-value=0.011  Score=52.31  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++-.+.|+|+.||||||+.+.|+..+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            445889999999999999999998763

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.93  E-value=0.015  Score=45.94  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            45689999999999999999999763

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.90  E-value=0.016  Score=51.13  Aligned_cols=34  Identities=18%  Similarity=0.052  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~   95 (219)
                      ++-.+.|.|+|||||||++..++...     .+.+|+..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            56688899999999999999998654     34455553

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.89  E-value=0.014  Score=46.51  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+|+|+|.+|+||||+..+|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            4579999999999999999999863

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.88  E-value=0.016  Score=51.60  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            4567889999999999999999854

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.88  E-value=0.013  Score=53.28  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..|.|+|+||+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.88  E-value=0.017  Score=51.39  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+||||||+++.+.--
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~   56 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRII   56 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHH
Confidence            57899999999999999999998433

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.88  E-value=0.022  Score=49.95  Aligned_cols=25  Identities=12%  Similarity=-0.040  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|.|+|||||||++..++..
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            6778899999999999999999986

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.86  E-value=0.018  Score=46.88  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ....+|+|+|.||+||||+..++..
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3557899999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.79  E-value=0.018  Score=51.21  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+--
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCC
Confidence            4567889999999999999999854

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.79  E-value=0.017  Score=50.55  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             CCeEEEE--EcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVL--IGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl--~G~PGSGKST~a~~La~~l   87 (219)
                      .+..++|  .|+||+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3456777  9999999999999999876

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.79  E-value=0.016  Score=48.62  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.||+||||+..+|..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC
Confidence            4568899999999999999999975

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.78  E-value=0.014  Score=45.40  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      .+..+|+|+|.+|+||||+..++.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999999884

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.015  Score=53.35  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++.++.|+||.||||||+++.|+-.+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            56789999999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.74  E-value=0.021  Score=45.76  Aligned_cols=29  Identities=28%  Similarity=0.515  Sum_probs=23.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHH-HHHHc
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADN-LSKLL   87 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~-La~~l   87 (219)
                      .+....+|+|+|.+|+||||+..+ +...+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            345678999999999999999998 54443

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.74  E-value=0.019  Score=51.52  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+--+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            45678899999999999999998543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.73  E-value=0.02  Score=51.05  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            4567889999999999999999854

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.71  E-value=0.02  Score=53.17  Aligned_cols=27  Identities=15%  Similarity=0.182  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|.|+|+||+||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.70  E-value=0.024  Score=44.93  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+..++...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            35689999999999999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.70  E-value=0.018  Score=48.92  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+.|+|++||||||+.+.|+..+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999765

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.70  E-value=0.024  Score=51.37  Aligned_cols=27  Identities=15%  Similarity=-0.021  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++-.++|+||+||||||+.+.|...+.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            445789999999999999999998774

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.69  E-value=0.0071  Score=57.20  Aligned_cols=29  Identities=24%  Similarity=0.432  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ..++|+||||+|||++++.+++.++...+
T Consensus       328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~  356 (595)
T 3f9v_A          328 IHILIIGDPGTAKSQMLQFISRVAPRAVY  356 (595)
T ss_dssp             CCEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred             cceEEECCCchHHHHHHHHHHHhCCCcee
Confidence            46999999999999999999998764433

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.68  E-value=0.022  Score=45.01  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+|+|+|.||+||||+..++...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999854

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.67  E-value=0.021  Score=51.10  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            5567889999999999999999854

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.64  E-value=0.022  Score=49.39  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|.|+||+||||++..++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            56688999999999999999999764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.64  E-value=0.018  Score=48.93  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +-.+.|+||.||||||+.+.|+-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            5678999999999999999998543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.63  E-value=0.011  Score=45.51  Aligned_cols=26  Identities=31%  Similarity=0.291  Sum_probs=12.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..++...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             SEEEEEEEECCCCC------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            35689999999999999999998743

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.62  E-value=0.02  Score=50.85  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4567889999999999999999853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.58  E-value=0.018  Score=49.57  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|+.||||||+.+.|+-.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            5567889999999999999999754

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.56  E-value=0.02  Score=51.62  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+|+|||||||++..|+-.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Confidence            5678899999999999999988743

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.47  E-value=0.023  Score=50.76  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcC
Confidence            4557889999999999999999854

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.43  E-value=0.025  Score=50.49  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+--
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcC
Confidence            5567889999999999999999753

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.43  E-value=0.026  Score=50.09  Aligned_cols=33  Identities=12%  Similarity=0.039  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~   94 (219)
                      ++..++|.|+||+||||+|..++...     .+.+|+.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            56678899999999999999998754     3445655

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.42  E-value=0.03  Score=43.58  Aligned_cols=25  Identities=20%  Similarity=0.187  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ..+|+|+.||||||+.+.|.-.++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            6789999999999999999876653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.39  E-value=0.017  Score=51.25  Aligned_cols=25  Identities=20%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcC
Confidence            4567889999999999999999853

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.38  E-value=0.028  Score=45.27  Aligned_cols=26  Identities=35%  Similarity=0.373  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence            45689999999999999999999763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.37  E-value=0.03  Score=48.31  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..+.+.|++|+||||++..|+..+
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36788889999999999999999766

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.35  E-value=0.026  Score=50.80  Aligned_cols=24  Identities=21%  Similarity=0.309  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++-.+.|+||.||||||+.+.|+-
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            566889999999999999999985

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.32  E-value=0.033  Score=47.86  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..+.|+|++|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56778888999999999999999765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.29  E-value=0.0067  Score=47.92  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      ....+|+|+|.+|+||||+..+|.
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999999998775

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.24  E-value=0.015  Score=50.55  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            55688999999999999999998654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.18  E-value=0.036  Score=47.91  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|.|+||+||||++..++...
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999998754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.15  E-value=0.03  Score=50.77  Aligned_cols=23  Identities=13%  Similarity=0.185  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++|.|+||+||||++..+++.+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78899999999999999998876

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.14  E-value=0.036  Score=50.39  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|+|.|++|+||||++..||..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356788888999999999999999765

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.13  E-value=0.031  Score=49.29  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CCCCCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        57 ~~~~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |..+. + .+.|.|+||+||||++..++...
T Consensus        24 GGl~~-G-iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           24 GGMQS-G-LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             CCBCS-E-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCCcC-C-eEEEECCCCCCHHHHHHHHHHHH
Confidence            44553 4 68999999999999988877643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.12  E-value=0.018  Score=50.39  Aligned_cols=25  Identities=20%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +-.+.|+|++||||||+.+.|+..+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999998766

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=94.07  E-value=0.037  Score=45.27  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      |-+..+|+|+|.+|+|||++..++..
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence            44567999999999999999999875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.06  E-value=0.034  Score=47.19  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|.||+||||+..+|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            468999999999999999999753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.03  E-value=0.018  Score=46.01  Aligned_cols=26  Identities=12%  Similarity=0.074  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...++|+|+|.+|+||||+..+|...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            35678999999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.02  E-value=0.032  Score=49.61  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +-.+.|+|++|+||||+...|+-.
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhcc
Confidence            457899999999999999999743

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.97  E-value=0.017  Score=51.16  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4567889999999999999999853

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.92  E-value=0.036  Score=47.71  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..+.|+|++|+||||+.+.|+ .+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            34678899999999999999998 44

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.92  E-value=0.022  Score=52.88  Aligned_cols=26  Identities=8%  Similarity=0.239  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..++|+||+||||||+.+.|+..+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34569999999999999999998765

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=93.91  E-value=0.049  Score=45.14  Aligned_cols=32  Identities=16%  Similarity=-0.064  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHI   92 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~I   92 (219)
                      .++...+++|++||||||.+-.++.++   |..++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl   60 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI   60 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence            456788899999999999999998877   55544

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=93.88  E-value=0.033  Score=48.18  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +...++|+|+.||||||+.+.|...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            3467889999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=93.87  E-value=0.034  Score=47.74  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|.|+|+||+||||+..+|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHC
Confidence            3556899999999999999999975

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.86  E-value=0.042  Score=49.84  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|.|+||+||||++..++...
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            55688999999999999999988743

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.83  E-value=0.013  Score=45.86  Aligned_cols=26  Identities=12%  Similarity=0.174  Sum_probs=7.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..+|...
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEEC-----------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            35579999999999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.75  E-value=0.041  Score=51.41  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +.++-.+.|+||.||||||+.+.|+-.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4677889999999999999999998643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=93.72  E-value=0.041  Score=49.85  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+.|+|++||||||+.+.|+-
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            345899999999999999999986

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=93.69  E-value=0.043  Score=51.64  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ...++|.|+||+||||+...+...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.66  E-value=0.038  Score=51.11  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNL   83 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~L   83 (219)
                      ++-.+.|+|++||||||+++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            6678999999999999999994

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.66  E-value=0.039  Score=46.28  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++|+|+|.||+||||+...|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            47899999999999999999754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=93.64  E-value=0.046  Score=46.15  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|.||+||||+..+|...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999999999999999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.57  E-value=0.035  Score=47.65  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +..+.|+|++||||||+.+.|+-
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCcHHHHHHHhcc
Confidence            45788999999999999999864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=93.55  E-value=0.042  Score=47.22  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      |.++-.|.|+|.||+||||+..+|..
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            34566899999999999999999875

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.53  E-value=0.051  Score=47.54  Aligned_cols=32  Identities=28%  Similarity=0.275  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+.-++|.|++|+||||++..|.++ |...++-
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d  174 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD  174 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence            4567999999999999999999764 7777644

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=93.51  E-value=0.019  Score=45.82  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ....+|+|+|.+|+||||+..+|..
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999998873

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=93.51  E-value=0.048  Score=46.80  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+|+|+|.||+||||+..++...
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999998654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=92.60  E-value=0.013  Score=46.27  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.+|+||||+..++..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4678999999999999999988864

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=93.48  E-value=0.048  Score=47.35  Aligned_cols=26  Identities=12%  Similarity=0.187  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+..+|+|+|.+|+||||+..+|..
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~  187 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKL  187 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhC
Confidence            34667999999999999999998854

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.47  E-value=0.049  Score=48.97  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .++.++.|+|+||+||||+.+.|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4678999999999999999999987

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=93.47  E-value=0.048  Score=48.49  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~   95 (219)
                      ++-.++|.|+||+||||+|..++...     .+.+|+++
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            45678889999999999999988754     34555554

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.46  E-value=0.055  Score=47.71  Aligned_cols=27  Identities=15%  Similarity=0.136  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++-++.|+|++|+||||+.+.|+....
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567899999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.45  E-value=0.052  Score=48.96  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....++.|+|+||+||||+..+|...
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCC
Confidence            35689999999999999999999754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.42  E-value=0.046  Score=45.81  Aligned_cols=26  Identities=15%  Similarity=0.092  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...++|+|+|.||+||||+..+|...
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            35578999999999999999999753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.41  E-value=0.046  Score=50.50  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|.|++||||||+++.++...
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55688999999999999999998654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=93.41  E-value=0.057  Score=49.10  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..|.|.|++|+||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56778888999999999999999876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.36  E-value=0.041  Score=47.32  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      -...|.|+|++|+||||+.+.|..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999763

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.33  E-value=0.045  Score=49.85  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+.|+|++||||||+.+.|+-.
T Consensus        44 ~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3899999999999999999754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=93.31  E-value=0.064  Score=45.43  Aligned_cols=26  Identities=19%  Similarity=0.136  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...++|+|+|.||+||||+...|...
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            34578999999999999999999753

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=93.31  E-value=0.082  Score=43.92  Aligned_cols=25  Identities=12%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCC---------CCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDP---------GVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~P---------GSGKST~a~~La~   85 (219)
                      .+..+|+|+|.+         |+||||+..++..
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            466899999999         9999999999985

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.26  E-value=0.053  Score=50.58  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-++.|+|+.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999998643

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.17  E-value=0.04  Score=58.83  Aligned_cols=38  Identities=11%  Similarity=0.023  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dll   98 (219)
                      .++..++|+||||+|||++|..++.+-     .+.+|++.+.+
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence            467789999999999999999997764     33467665543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.09  E-value=0.065  Score=48.42  Aligned_cols=26  Identities=15%  Similarity=0.279  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|.|+||+||||++..++...
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56688899999999999999988753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.07  E-value=0.066  Score=48.70  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ++-++.|+|++||||||+.+.|+..+.
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            556899999999999999999998764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.02  E-value=0.065  Score=44.81  Aligned_cols=26  Identities=15%  Similarity=0.253  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            35689999999999999999999753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=92.96  E-value=0.059  Score=50.47  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.++||.||||||+.+.|+..+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45688999999999999999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=92.88  E-value=0.065  Score=46.92  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .....|+|+|+||+||||+...|+..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.87  E-value=0.053  Score=50.77  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.++||.||||||+.+.|+..+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            45688999999999999999998755

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.86  E-value=0.075  Score=50.42  Aligned_cols=28  Identities=29%  Similarity=0.359  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +.++-.+.|+||.||||||+.+.|+-.+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            4677889999999999999999998644

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=92.80  E-value=0.46  Score=40.79  Aligned_cols=104  Identities=11%  Similarity=0.053  Sum_probs=53.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC-CCeeccchhHHhhcCC---Cc----h-hHHHHHHHHHcCCcc----------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELSP---RS----A-LYKQIANAVNEGKLV----------  122 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg-~~~Is~~dllr~~~~~---~s----~-lg~~i~~~l~~g~~i----------  122 (219)
                      .+..|+|+||   ||+|+.++|.+.+. -..++....-|....+   +.    . .-++....+.+|..+          
T Consensus       104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y  180 (295)
T 1kjw_A          104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY  180 (295)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence            4456888898   79999999998763 1112222222322111   10    0 123445556666543          


Q ss_pred             --cHHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeC-hhhh
Q 027791          123 --PEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFL-YGCC  180 (219)
Q Consensus       123 --p~e~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~-~e~l  180 (219)
                        +.+.+..+    +.+     +..+|+|.-+....+...  ....| .+|++..| .+.+
T Consensus       181 Gt~~~~V~~~----~~~-----G~~vildid~~g~~~l~~--~~~~p-i~IfI~pps~~~L  229 (295)
T 1kjw_A          181 GTSVQSVREV----AEQ-----GKHCILDVSANAVRRLQA--AHLHP-IAIFIRPRSLENV  229 (295)
T ss_dssp             EEEHHHHHHH----HHT-----TCEEEECCCTTHHHHHHH--TTCCC-EEEEECCSSHHHH
T ss_pred             eeeHHHHHHH----Hhc-----CCeEEEEeCHHHHHHHHh--cccCC-eEEEEECCCHHHH
Confidence              33333333    332     457899976544333322  11235 78888876 4444

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=92.80  E-value=0.065  Score=47.32  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....++|+|++||||||+.+.+...+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            44568899999999999999988753

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=92.79  E-value=0.057  Score=43.61  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |+|.|.|..|+||||++..||..+
T Consensus         1 mkI~vs~kGGvGKTt~a~~LA~~l   24 (254)
T 3kjh_A            1 MKLAVAGKGGVGKTTVAAGLIKIM   24 (254)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999877

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=92.65  E-value=0.072  Score=46.56  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .+.-++|.|++|+||||+|..|.+ .|...++-|
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD  178 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDD  178 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence            456799999999999999999864 677776543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=92.64  E-value=0.087  Score=44.46  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....+|+|+|.+|+||||+..++...
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhC
Confidence            35589999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	3e-11
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	7e-11
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	8e-11
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-10
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	8e-10
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-09
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-09
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-08
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	3e-08
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	5e-06
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	7e-06
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	2e-05

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 2/114 (1%)

Query: 62  RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL 121
           +GV+ VL+G PG  K   A  L+K   V H++ G ++R  ++  S L K++   ++ GKL
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 122 VPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLF 175
           V ++++  L+ K LE    +  +GF+LDG PRT  QA  L+         L   
Sbjct: 62  VSDEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSV 113

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 56.8 bits (136), Expect = 7e-11
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           ++ G P   K    + +    ++ HIS G L+R E++  S   K+    + +G+LVP+++
Sbjct: 7   MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEI 66

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCV 181
           +  ++ +R        E+G++LDG PR+  QA++LE        F+ L +    +
Sbjct: 67  VVNMVKER-LRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELL 120

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 56.8 bits (136), Expect = 8e-11
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   A+ +     +PHIS G + R  +   + L  Q    ++ G LVP++V
Sbjct: 4   VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTM 167
              ++ +RL +     ++GF+LDG PRT  QA +LE     
Sbjct: 64  TIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALETMLAD 102

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           VL+G PG  K   AD + +    PHIS G + R  +   + L  +  + +++G LVP++V
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCY 165
              ++ +R        ++GF+LDG PRT  QA +L+   
Sbjct: 64  TIGIVRER--LSKSDCDNGFLLDGFPRTVPQAEALDQLL 100

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 54.1 bits (129), Expect = 8e-10
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 60  PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG 119
             R ++  ++G PG  K   +  ++K  E+ H+S G L+R  +   + +       +++G
Sbjct: 3   SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQG 62

Query: 120 KLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGC 179
           KL+P+DV+       L E     +  ++LDG PRT  QA +L+  Y +         +  
Sbjct: 63  KLIPDDVMT---RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEV 119

Query: 180 CVII 183
               
Sbjct: 120 IKQR 123

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G PG  K   A  L++ L +P IS G L R+ +   + L  +    ++ G LVP D+
Sbjct: 4   LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTM 167
              L+  RL        +GFILDG PR+  QA +L      
Sbjct: 64  TNELVDDRLNN--PDAANGFILDGYPRSVEQAKALHEMLER 102

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
           +L+G P   K   A  + +   +P IS G ++R  +   S L KQ  + ++ GKLV +++
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLF 173
           + AL+ +R         +GF+LDG PRT  QA +++         L 
Sbjct: 64  VIALVKER--IAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLE 108

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 58  SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAV 116
           SP +  V   ++G PG  K    + L K     H+S G L+R E     S   + I N +
Sbjct: 4   SPDQVSVI-FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCI 62

Query: 117 NEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
            EG++VP+++  ALL   + +     +  F++DG PR   QA+S 
Sbjct: 63  KEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISF 107

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPED 125
            ++G PG  K      + +     H+S G L+R E   P S   + I   + EGK+VP +
Sbjct: 5   FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 64

Query: 126 VIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCC 180
           +  +LL + +++       ++ F++DG PR +                 F+  + C 
Sbjct: 65  ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 64  VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP 123
           ++ VLIG PG  K   A NL +     H++ G ++R +++  + L  +    +++G LV 
Sbjct: 3   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 62

Query: 124 EDVIFALLSKRLEEGYYRGESGFILDG 150
           +D++  ++   L       ++GFILDG
Sbjct: 63  DDIMVNMIKDELTNNPAC-KNGFILDG 88

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K    + + +     H+S G L+R E+S  SA  K ++  + +G+LVP + 
Sbjct: 12  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLET 71

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSL 161
           +  +L   +         GF++DG PR   Q    
Sbjct: 72  VLDMLRDAMVA-KVDTSKGFLIDGYPREVKQGEEF 105

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 67  VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV 126
            ++G PG  K     N+ +     H+S G L+RQE    S   + IA  +  G++VP  V
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTM 167
              LL   ++    +    F++DG PR      S E     
Sbjct: 70  TVKLLKNAIDANQGK---NFLVDGFPRNEENNNSWEENMKD 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.95
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.93
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.93
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.92
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.91
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.91
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.91
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.9
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.9
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.89
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.89
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.87
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.54
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.47
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.44
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.42
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.39
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.38
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.34
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.32
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.28
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.27
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.24
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.22
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.2
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.2
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.16
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.15
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.15
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.1
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.06
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.02
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.0
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.94
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.92
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.9
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.76
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.73
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.71
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.7
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.58
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.57
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.55
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.48
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.4
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.34
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.33
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.3
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.2
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.13
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.01
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.0
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.98
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.94
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.88
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.84
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.83
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.8
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.8
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.78
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.76
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.7
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.58
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.51
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.51
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.5
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.42
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.41
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.33
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.22
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.14
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.11
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.09
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.06
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.03
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.01
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.0
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.99
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.91
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	96.9
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.88
d1okkd2	207	GTPase domain of the signal recognition particle r	96.84
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.81
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.73
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.66
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.62
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.58
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.55
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.53
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.52
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.48
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.41
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.39
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.37
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.31
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.3
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.28
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.28
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.22
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.2
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.09
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.05
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.03
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.97
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.96
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.88
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.88
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.87
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.79
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.78
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.78
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.75
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.68
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.62
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.61
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.59
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.58
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.55
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.53
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.53
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.51
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.51
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.49
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.48
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.46
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.45
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.45
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.43
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.42
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.42
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.39
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.37
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.36
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.34
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.32
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.26
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.26
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.25
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.2
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.2
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.19
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.17
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.16
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.16
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.14
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.12
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.11
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.05
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.05
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.96
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.9
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.89
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.85
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.85
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.83
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.8
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.73
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.71
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.68
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.66
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.65
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.64
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.58
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.56
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.54
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.53
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.39
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.37
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.35
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.34
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.33
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.3
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.2
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.09
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.05
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.99
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.98
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.98
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.93
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.88
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.85
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.84
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.82
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.75
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.65
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.62
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	93.6
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.56
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.46
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.37
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	93.36
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.34
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.12
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.12
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.11
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.92
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.8
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.67
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.53
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	92.24
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.08
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	92.08
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.84
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.38
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.27
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	91.16
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	90.94
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	90.86
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.74
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.57
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.34
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.34
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.19
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.0
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.82
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.45
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.3
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.09
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.03
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.39
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.1
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	88.1
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	87.8
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	87.49
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.41
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	86.85
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.5
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.71
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.47
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.42
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	85.35
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	84.77
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	84.47
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	84.15
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.39
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	83.39
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.23
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	83.06
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	82.88
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	82.43
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.22
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	82.04
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	81.05

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.95  E-value=1.2e-27  Score=194.64  Aligned_cols=126  Identities=25%  Similarity=0.417  Sum_probs=118.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      |.+.|+|+|+|||||||||+|+.||++||++|||++|++|+++...++.+..+.+.+..|..+|++++..++.+.+... 
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~-   81 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL-   81 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH-
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh-
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999988775 


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                        ...+||+||||++..|++.|+....++.||+|+++++++       .+|+.+|.
T Consensus        82 --~~~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l-------~~R~~~r~  128 (189)
T d2ak3a1          82 --TQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVI-------KQRLTDRP  128 (189)
T ss_dssp             --TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHTGSH
T ss_pred             --hhcCcccccccchhhHHHHhhhcCcceEEEEEeccchhh-------hhhcccch
Confidence              357899999999999999999888899999999999999       99998774

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6e-26  Score=181.23  Aligned_cols=123  Identities=27%  Similarity=0.433  Sum_probs=113.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|||||||||+|+.|+++||++||++++++++....+++.++.+.+++.+|..+|++++..++..++....  ..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~--~~   78 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR   78 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccc--cc
Confidence            6899999999999999999999999999999999999988889999999999999999999999999988886653  46


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      +|||+||||++..|+..+... ..|+.||+|++|++++       .+|+.+|.
T Consensus        79 ~g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l-------~~R~~~~~  124 (179)
T d1e4va1          79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELI-------VDRIVKDD  124 (179)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHH-------HHHHHTTC
T ss_pred             cceeecccccchHHhhhhhhccCCceEEEEeccchhhh-------hhhhcccc
Confidence            799999999999999998765 4799999999999999       99998874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.93  E-value=1.2e-25  Score=181.04  Aligned_cols=129  Identities=29%  Similarity=0.433  Sum_probs=117.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++++|+|+|||||||||+|+.||++||++||+++|++|++...+++.++.+..++++|..++++.+..++..++....  
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~--   79 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP--   79 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG--
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccc--
Confidence            678999999999999999999999999999999999999988889999999999999999999999999999987653  


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT  199 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~  199 (219)
                      ..+|||+||||++..|+..|...     ..++++++|+++++.+       .+|+..|..+..
T Consensus        80 ~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~-------~~r~~~r~~~~d  135 (190)
T d1ak2a1          80 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL-------IRRITGRLIHSD  135 (190)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHTCEECCC
T ss_pred             ccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHH-------HhhhccCCCCCc
Confidence            46899999999999999988653     3678999999999999       999999976653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.5e-25  Score=174.92  Aligned_cols=128  Identities=25%  Similarity=0.395  Sum_probs=114.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG  142 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~  142 (219)
                      .|+|+|+|||||||||+|+.||++||++||++++++++.....++.+..++++++++..++++....++..++.+..+ .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~   80 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA-C   80 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG-G
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcc-c
Confidence            478999999999999999999999999999999999999988999999999999999999999999999988877643 4


Q ss_pred             CCeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          143 ESGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       143 ~~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                      ..|||+||||++..|++.+.+.     ..|+.||+|+++++++       ++|+.+|....
T Consensus        81 ~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~-------~~R~~~~~~~~  134 (180)
T d1akya1          81 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL-------VARITNADALK  134 (180)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-------HHHHHSHHHHH
T ss_pred             cCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchh-------hhccccccccc
Confidence            6799999999999999887653     3689999999999999       99998775443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=4.4e-24  Score=170.55  Aligned_cols=127  Identities=28%  Similarity=0.400  Sum_probs=114.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|||||||||+|+.|+++||+.||+++++++++....++.+..+.++++++..+++++...++..++....  ..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~   78 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD--AA   78 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcc--cc
Confidence            6899999999999999999999999999999999999998889999999999999999999999999998887653  46


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT  199 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~  199 (219)
                      .+||+||||++..|+..+...     ..|+++|+|+++++++       .+|+.+|.....
T Consensus        79 ~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l-------~~R~~~r~r~~~  132 (181)
T d2cdna1          79 NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL-------LERLKGRGRADD  132 (181)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHHHCCTTC
T ss_pred             ccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHH-------Hhhhcccccccc
Confidence            799999999999999888653     3789999999999999       999998865433

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=4e-24  Score=172.97  Aligned_cols=126  Identities=22%  Similarity=0.318  Sum_probs=114.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      ++..|+|+|||||||||+|+.|+++||++||++++++|++....++.+..+.+++.+|..+|++++..++..++....+ 
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-   85 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVD-   85 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTT-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccc-
Confidence            5577999999999999999999999999999999999999988899999999999999999999999999999987643 


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..+|||+||||++..|++.++.. ..++.++++.++.++.       .+|...+.
T Consensus        86 ~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~  133 (194)
T d3adka_          86 TSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETM-------TKRLLKRG  133 (194)
T ss_dssp             TCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred             ccccceeeeccchhHHHHHHHHHhCCccchhccccchhhh-------HhHhhhhc
Confidence            47799999999999999999764 4789999999999999       88865553

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.91  E-value=3.5e-24  Score=172.69  Aligned_cols=129  Identities=22%  Similarity=0.300  Sum_probs=114.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .+|..|+|+|||||||||+|++||++||++||++++++|++.....+.+..+...++++...+++.+..++..++...  
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   81 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--   81 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhh--
Confidence            467889999999999999999999999999999999999999888899999999999999999999988888887664  


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT  199 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~  199 (219)
                       ..++||+||||++.+|++.+++.    ..|++||+|++|++++       .+|+.+|.....
T Consensus        82 -~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~-------~~R~~~~~~~~~  136 (194)
T d1qf9a_          82 -QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVM-------TQRLLKRGESSG  136 (194)
T ss_dssp             -TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH-------HHHHHHHHTTSC
T ss_pred             -hcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHH-------HHHHHhhccccc
Confidence             35789999999999999888653    3689999999999999       999987755443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.90  E-value=8.3e-24  Score=169.25  Aligned_cols=122  Identities=27%  Similarity=0.431  Sum_probs=110.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|||||||||+|+.||++||++||+++|++|++....++.++.+.+++.+|..+|+++...++..++....  .+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~--~~   78 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSD--CD   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSST--TS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccc--cc
Confidence            6899999999999999999999999999999999999988889999999999999999999999999999887653  46


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDG  194 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R  194 (219)
                      .+||+||||++..|+..|...     ..+..+++++++++.+       .+|+..+
T Consensus        79 ~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~-------~~R~~~~  127 (182)
T d1s3ga1          79 NGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEEL-------IARLTAD  127 (182)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTT
T ss_pred             cceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhh-------hhhhhcc
Confidence            799999999999999988653     2568899999999999       9998655

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=171.04  Aligned_cols=129  Identities=21%  Similarity=0.400  Sum_probs=112.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC-CCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc-
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY-  140 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~-~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~-  140 (219)
                      |++|+|+|||||||||+|++||++||+.||++++++|++.. ..++.++.+...++++..+|++.+..++.+++....+ 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            68999999999999999999999999999999999998874 4578899999999999999999999999888765432 


Q ss_pred             -cCCCeEEEeCccCCHHHHHHHHhh----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          141 -RGESGFILDGIPRTRIQAVSLEFC----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       141 -~~~~g~IlDG~Pr~~~qa~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                       ....+|++||||++..|++.++..    ..++.|++++++.+++       .+|+.+|..+.
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~-------~~r~~~R~~~~  136 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC-------IERCLERGKSS  136 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH-------HHHHHHHHHTS
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhh-------eeecccCCCcc
Confidence             346899999999999999988754    3578999999999999       99998886554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.3e-23  Score=167.31  Aligned_cols=129  Identities=26%  Similarity=0.423  Sum_probs=112.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcC-CCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~-~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      |.+...|+|+|||||||||+|+.|+++||++||+++|++|++.. ..+.+++.+.++..++...++.....++.+++...
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   84 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhh
Confidence            34667888999999999999999999999999999999998764 45788999999999999999999888888777664


Q ss_pred             cccCCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          139 YYRGESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ......+||+||||++.+|+..+... ..++.+++|+++++++       ++|+.+|.
T Consensus        85 ~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~~~  135 (196)
T d1ukza_          85 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIM-------LERLLERG  135 (196)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred             hccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHH-------HHHHHhcc
Confidence            33456799999999999999988665 5789999999999999       99987654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.89  E-value=1.9e-23  Score=168.08  Aligned_cols=126  Identities=25%  Similarity=0.379  Sum_probs=111.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR  141 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~  141 (219)
                      .||+|+|+|||||||||+|+.|+++||++||++++++++......+..+.+.+.+..|..++++.....+...+.... .
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~   80 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPD-A   80 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHH-H
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcc-c
Confidence            578999999999999999999999999999999999999988788888899999999999999988777776665543 2


Q ss_pred             CCCeEEEeCccCCHHHHHHHHhh-CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          142 GESGFILDGIPRTRIQAVSLEFC-YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       142 ~~~g~IlDG~Pr~~~qa~~l~~~-~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+||+||||++..|+..|+.. ..|+.+|+|+++++++       .+|+..|.
T Consensus        81 ~~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l-------~~R~~~~~  128 (189)
T d1zaka1          81 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELL-------VERVVFDD  128 (189)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHH-------HHHHTTTC
T ss_pred             ccCcEEeeccchhhHHHhhhhhcccccchheeechhhhhh-------hhhccccc
Confidence            35789999999999999999875 4789999999999999       99997764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=2.8e-22  Score=158.96  Aligned_cols=123  Identities=28%  Similarity=0.457  Sum_probs=110.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|||||||||+|+.||++||++||+++++++++....++.+..+.+++.+|..+|++....++..++....  ..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   78 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDD--CQ   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchh--hh
Confidence            6899999999999999999999999999999999999888888999999999999999999999999988877653  36


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+||+||+|.+..+...+...     ..++.+++|+++.+.+       ++|+..+.
T Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~-------~~R~~~~~  128 (182)
T d1zina1          79 NGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVL-------MERLTADD  128 (182)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-------HHHHHTTC
T ss_pred             cCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchh-------hhcccccc
Confidence            799999999999988777543     3689999999999999       99998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.54  E-value=1.2e-14  Score=112.63  Aligned_cols=116  Identities=13%  Similarity=0.128  Sum_probs=75.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC-CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhcc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY  139 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg-~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~  139 (219)
                      +++++|+|+|+|||||||+|+.|+++|+ ..+++.+++............       ..+.....+.....+.+.+....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i   75 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDT-------ELDTHIIEEKDEDRLLDFMEPIM   75 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHHH-------hhcccchHHHHHHHHHHHHHhhh
Confidence            4789999999999999999999999996 577777666655433222111       11222333333333333333322


Q ss_pred             ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          140 YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       140 ~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                       ....++++|++++...+      ...++.+|+|+++++++       ++|+.+|..+
T Consensus        76 -~~~~~~~~~~~~~~~~~------~~~~~~vI~L~~~~e~l-------~~Rl~~R~~~  119 (174)
T d1y63a_          76 -VSRGNHVVDYHSSELFP------ERWFHMVVVLHTSTEVL-------FERLTKRQYS  119 (174)
T ss_dssp             -TSSSEEEEECSCCTTSC------GGGCSEEEEEECCHHHH-------HHHHHHTTCC
T ss_pred             -hhcccccccHHHHHHHH------HhcCceEEEEECCHHHH-------HHHHHhCCCc
Confidence             24568899988765321      12467899999999999       9999998644

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.2e-13  Score=104.31  Aligned_cols=117  Identities=11%  Similarity=-0.001  Sum_probs=74.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHH---HHHHHHHHHh
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI---FALLSKRLEE  137 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i---~~Ll~~~l~~  137 (219)
                      ..+..|+|+|+|||||||+++.|+++++.++++.+++......          .....+.....+..   ...+...+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI----------EKMASGEPLNDDDRKPWLQALNDAAFA   73 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHh----------hhhccCcceehhhhHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999876544321          11112222222111   1111111111


Q ss_pred             ccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          138 GYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       138 ~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .. .....++++.........+.+.....+..+|+|++|++++       ++|+.+|.
T Consensus        74 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~-------~~Rl~~R~  123 (171)
T d1knqa_          74 MQ-RTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVI-------ESRLKARK  123 (171)
T ss_dssp             HH-HHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHH-------HHHHHTST
T ss_pred             HH-hccCceEeeccchHHHHHHHHHHhCCCceEEeecCCHHHH-------HHHHHhCc
Confidence            11 1234555554433445556666666778999999999999       99999885

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.45  E-value=8.7e-14  Score=107.25  Aligned_cols=109  Identities=18%  Similarity=0.177  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      |+|+|+|+|||||||+|+.|+++||++++++++.++..........      .........+.+...+.+...      .
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~------~   72 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDE------EYDCPILDEDRVVDELDNQMR------E   72 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCS------SSSCCCBCHHHHHHHHHHHHH------H
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhH------HhhhhhHHHHHHHHHhhhhhh------c
Confidence            6799999999999999999999999999999999887543211000      001222333343333333322      2


Q ss_pred             CeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          144 SGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .+..++++.....     . ....+.+|+|+++++++       .+|+.+|...
T Consensus        73 ~~~~~~~~~~~~~-----~-~~~~~~~i~l~~~~~~~-------~~Rl~~r~~~  113 (173)
T d1rkba_          73 GGVIVDYHGCDFF-----P-ERWFHIVFVLRTDTNVL-------YERLETRGYN  113 (173)
T ss_dssp             CCEEEECSCCTTS-----C-GGGCSEEEEEECCHHHH-------HHHHHHTTCC
T ss_pred             CCcccchhHHHHH-----H-HhcCCCcceecCCHHHH-------HHHHHhcCCC
Confidence            3566676654321     1 12367899999999999       9999988644

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.44  E-value=2.4e-13  Score=104.17  Aligned_cols=124  Identities=11%  Similarity=-0.011  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ..|+|+|||||||||+|+.|+++++..++..+|.++..............+.    .....+.+..++...+.     ..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~   73 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDEL----LALTWKNITDLTVNFLL-----AQ   73 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHH----HHHHHHHHHHHHHHHHH-----TT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHH----HHHHHHHHHHHHHHHHh-----cC
Confidence            4688999999999999999999999988877777777655332111110000    00111223333333332     35


Q ss_pred             CeEEEeCccCCHHHHHHHHhh-----CCCcEEEEEEeChhhhcccccchhhhhhcCCCCCCCCCc
Q 027791          144 SGFILDGIPRTRIQAVSLEFC-----YTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLTCPCN  203 (219)
Q Consensus       144 ~g~IlDG~Pr~~~qa~~l~~~-----~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~~g~~  203 (219)
                      .++|+|++.............     ..+..+++|+++++++       .+|+.+|......+..
T Consensus        74 ~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-------~~R~~~R~~~~~~~~~  131 (176)
T d2bdta1          74 NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREEL-------LRRDALRKKDEQMGER  131 (176)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHH-------HHHTTTSCC----CGG
T ss_pred             CCcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHH-------HHHHHhCCCchhhhHH
Confidence            788999887765544433321     2345689999999999       9999999765544443

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.42  E-value=9.6e-14  Score=108.94  Aligned_cols=110  Identities=9%  Similarity=0.028  Sum_probs=70.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-CCcccHHHHHHHHHHHHHhccccCCC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      |+|+|+|||||||+|+.||+++|+++++.|+++++..  +.++    .+.+.. |.    +....+..+.+....  ...
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~--g~~i----~ei~~~~g~----~~~~~~~~~~l~~~~--~~~   72 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTV----ADVVAAEGW----PGFRRRESEALQAVA--TPN   72 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCH----HHHHHHHHH----HHHHHHHHHHHHHHC--CSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh--hhhh----hhhhcccch----HHHHHHHHHHHHhhc--ccc
Confidence            6789999999999999999999999999999887653  2222    222221 11    222233333333321  234


Q ss_pred             eEEEe--CccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          145 GFILD--GIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       145 g~IlD--G~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                      .++..  |.+......+.+...   ..+|+|+++++++       .+|+.+|...
T Consensus        73 ~~~~~~~~~~~~~~~~~~l~~~---~~~v~L~~~~e~l-------~~Rl~~~~~~  117 (170)
T d1e6ca_          73 RVVATGGGMVLLEQNRQFMRAH---GTVVYLFAPAEEL-------ALRLQASLQA  117 (170)
T ss_dssp             EEEECCTTGGGSHHHHHHHHHH---SEEEEEECCHHHH-------HHHHHHHHCS
T ss_pred             ceecccccchhhhHHHHhhhcc---ceeEEEecCchhH-------HHHHhhcccc
Confidence            45444  344554445555442   4799999999999       9998765433

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.39  E-value=3.8e-13  Score=102.27  Aligned_cols=118  Identities=13%  Similarity=0.062  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH-cCCCeeccchhHHhhcCCCchhH----HHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL-LEVPHISMGSLVRQELSPRSALY----KQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~-lg~~~Is~~dllr~~~~~~s~lg----~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      ..|+|+|+|||||||+|+.|.+. .+..+++.+++.+..........    .....       ...++...++...+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~   75 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILYGG   75 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhH-------HHHHHHHHHHHHHHHhh
Confidence            35778999999999999998765 48999999988766543221110    00000       01123444444444443


Q ss_pred             cccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          139 YYRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                        .....+|+|+........+.+..    ......+|+|++|.|++       ++|..+|...
T Consensus        76 --~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~~~  129 (152)
T d1ly1a_          76 --DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL-------VKRNSKRGTK  129 (152)
T ss_dssp             --SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHH-------HHHHTTCGGG
T ss_pred             --ccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHH-------HHHHHccCCC
Confidence              23457899987777665544433    33567899999999999       9999998643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.38  E-value=2.1e-13  Score=106.54  Aligned_cols=109  Identities=14%  Similarity=0.080  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      .|+|+|+|||||||+++.||+++|++++++|+++++...  .++...    +.......-......+.+.+..    .+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g--~~i~~~----~~~~g~~~~r~~e~~v~~~l~~----~~~   71 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKVSEI----FEQKRENFFREQEQKMADFFSS----CEK   71 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCHHHH----HHHHCHHHHHHHHHHHHHHHTT----CCS
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHh--hhhhhH----HHhhhhccchhhhhhhchhhhh----ccc
Confidence            388999999999999999999999999999999877542  222222    2211111111122222333332    223


Q ss_pred             eEEEeC-ccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          145 GFILDG-IPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       145 g~IlDG-~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      .++..| -+.+   ...+   ...+.+|+|++|.+++       ++|+.+|..
T Consensus        72 ~v~~~~g~~~~---~~~l---~~~~~vI~L~~s~~~l-------~~Rl~~~~~  111 (161)
T d1viaa_          72 ACIATGGGFVN---VSNL---EKAGFCIYLKADFEYL-------KKRLDKDEI  111 (161)
T ss_dssp             EEEECCTTGGG---STTG---GGGCEEEEEECCHHHH-------TTCCCGGGT
T ss_pred             cccccccchhh---HHHH---HhCCeEEEeccchHHH-------HHHHccccc
Confidence            344333 2111   1112   2356899999999999       999976643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=1.7e-12  Score=101.10  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE  143 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~  143 (219)
                      ++|+|+|+|||||||+++.||+++|++++++|+++.+...  .++.+....   .|.....+.-...+..-+..     +
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g--~~i~~~~~~---~g~~~~r~~e~~~~~~~~~~-----~   71 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RSIADIFAT---DGEQEFRRIEEDVVRAALAD-----H   71 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SCHHHHHHH---HCHHHHHHHHHHHHHHHHHH-----C
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhh--hhhhhhhhh---hhHHHHHHHHhhhhhhcccc-----c
Confidence            4588889999999999999999999999999998876532  222222111   12211222323333333332     2


Q ss_pred             CeEEEeCcc--CCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          144 SGFILDGIP--RTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       144 ~g~IlDG~P--r~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ..++..|.+  .+......    .....+|+|+++++++       ++|+.++.
T Consensus        72 ~~vi~~gg~~~~~~~~~~~----l~~~~~I~L~~~~~~~-------~~R~~~~~  114 (165)
T d2iyva1          72 DGVLSLGGGAVTSPGVRAA----LAGHTVVYLEISAAEG-------VRRTGGNT  114 (165)
T ss_dssp             CSEEECCTTGGGSHHHHHH----HTTSCEEEEECCHHHH-------HHHTTCCC
T ss_pred             ccccccccccccccccccc----ccccceeeeeccchhh-------hhcccccc
Confidence            345554432  22222222    2345789999999999       99997653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-11  Score=100.97  Aligned_cols=122  Identities=14%  Similarity=0.110  Sum_probs=76.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHH-----
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS-----  132 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~-----  132 (219)
                      +++..|+|.|++||||||+++.|++.+   |+.++.+.     +....++.++.+++.+.....++.....-+..     
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~   75 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE   75 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHH
Confidence            367899999999999999999999987   67776443     22345677888888877666555543322221     


Q ss_pred             --HHHHhccccCCCeEEEeCccCCHH------------HHHHHHh-hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          133 --KRLEEGYYRGESGFILDGIPRTRI------------QAVSLEF-CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       133 --~~l~~~~~~~~~g~IlDG~Pr~~~------------qa~~l~~-~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                        ..+... ...+..+|+|.|+.+..            ..+.+.. ...||++|+|++|++++       .+|..++.
T Consensus        76 ~~~~i~~~-l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~-------~~R~~~~~  145 (209)
T d1nn5a_          76 QVPLIKEK-LSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADA-------AKRGAFGH  145 (209)
T ss_dssp             THHHHHHH-HHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHH-------HHC-----
T ss_pred             HHHhHHHH-hhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHH-------hhhhcccc
Confidence              111111 02245689998754221            1111211 13799999999999999       99986554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=4.2e-12  Score=100.50  Aligned_cols=103  Identities=11%  Similarity=0.005  Sum_probs=76.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY  140 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~  140 (219)
                      .+|..|+++|+|||||||+|+.+++.+++.+|+.|++...                        +.....+...+.+   
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~---   64 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ---   64 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT---
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC---
Confidence            4678899999999999999999999999999999775321                        1123344455544   


Q ss_pred             cCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCCCCC
Q 027791          141 RGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCLT  199 (219)
Q Consensus       141 ~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~~  199 (219)
                        +..+|+|+...+..+...+..    ......+|+|++|.+++       .+|...|..+..
T Consensus        65 --g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~-------~~Rn~~R~~~~~  118 (172)
T d1yj5a2          65 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA-------RHNNRFREMTDP  118 (172)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH-------HHHHHHHHHHCT
T ss_pred             --CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHH-------HHHHHHhcccCc
Confidence              457999998777776555533    23345789999999999       999988865543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.27  E-value=8.2e-12  Score=96.28  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=73.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc-chhHHhhcCCCc-----hhHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM-GSLVRQELSPRS-----ALYKQIANAVNEGKLVPEDVIFALLSKRL  135 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~-~dllr~~~~~~s-----~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l  135 (219)
                      .+..|+|.|+|||||||+|+.|++++|.+++++ +|.++.......     +........       .......++....
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~   75 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM-------IMQIAADVAGRYA   75 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHH-------HHHHHHHHHHHHH
Confidence            456799999999999999999999999998865 345665544221     111100000       0011112222111


Q ss_pred             HhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCC
Q 027791          136 EEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLC  197 (219)
Q Consensus       136 ~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~  197 (219)
                           .....+|+|+.++... ...+.....+..+|+|+++++++       .+|+.+|...
T Consensus        76 -----~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~e~~-------~~R~~~R~~~  124 (176)
T d1zp6a1          76 -----KEGYFVILDGVVRPDW-LPAFTALARPLHYIVLRTTAAEA-------IERCLDRGGD  124 (176)
T ss_dssp             -----HTSCEEEECSCCCTTT-THHHHTTCSCEEEEEEECCHHHH-------HHHHHTTCTT
T ss_pred             -----hcCCCeEecccccHHH-HHHHHhcccccccccCCCCHHHH-------HHHHHhCCCc
Confidence                 2356789998765432 33333444567889999999999       9999998643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.24  E-value=1.7e-12  Score=100.49  Aligned_cols=122  Identities=13%  Similarity=0.052  Sum_probs=69.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcC-----CCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG  138 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg-----~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~  138 (219)
                      ..|+|.|+|||||||+++.|+++|+     +++++.++..+..........  ..+.+................+.+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS--DRDQMRKMDPETQKRIQKMAGRKIAEM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS--SGGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhh--hhhhhhhhhchhhHHHHHHHHHHHHHH
Confidence            4688999999999999999999884     345556666655432110000  000000000000111222222333322


Q ss_pred             cccCCCeEEEeCccCCHHHH-------HHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          139 YYRGESGFILDGIPRTRIQA-------VSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       139 ~~~~~~g~IlDG~Pr~~~qa-------~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                        .....+++|+++.+..+.       ..+.....|+.+|+|+++++++       .+|+.+|..
T Consensus        80 --~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-------~~R~~~~~~  135 (190)
T d1khta_          80 --AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEI-------LMRRMSDET  135 (190)
T ss_dssp             --HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHH-------HHHHHTSSS
T ss_pred             --hCCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHH-------HHHHHHhcc
Confidence              235678999987643211       1122234689999999999999       999887653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=2.7e-11  Score=97.78  Aligned_cols=119  Identities=14%  Similarity=0.121  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccH-------------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE-------------------  124 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~-------------------  124 (219)
                      ..|.|+|++||||||+|+.|. ++|+++|++|++.++.+..+.+....+.+........++                   
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            467799999999999999985 699999999999999888777776666554422211111                   


Q ss_pred             ----HHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          125 ----DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       125 ----e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                          .+++..+.+++..... ....-+|+|+ |.-.+ .. +  ....|.+|++++|+++.       .+|+..|+
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~ll~e-~~-~--~~~~d~ii~v~~~~~~r-------~~R~~~R~  145 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIE-NK-L--TALCDRILVVDVSPQTQ-------LARSAQRD  145 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTT-TT-C--GGGCSEEEEEECCHHHH-------HHHHC---
T ss_pred             hHhhcccCHHHHHHHHHHHhhccCCeEEEEe-ccccc-cc-h--hhhhhheeeecchHHHH-------HHHHHhcC
Confidence                2334344334433211 1233466664 43322 11 1  12478999999999999       99999985

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.9e-12  Score=101.92  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      ++.|+|.|||||||||+|+.|+++||++|||+|||+|+..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a   42 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   42 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            4588899999999999999999999999999999999754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.2e-11  Score=99.71  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=73.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcc-----cHHH-------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV-----PEDV-------  126 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~i-----p~e~-------  126 (219)
                      ++..|+|.|++||||||+++.|++.+   |+.++..   .++  +.+++.++.+++.+..+...     ....       
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~---~~e--p~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF---TRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   75 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE---EES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE---ecC--CCCccchhhhHHHHhccccccccccchHHHHHHHHH
Confidence            46789999999999999999999977   5554321   122  24567888888877654321     2111       


Q ss_pred             -----HHHHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHHh----hCCCcEEEEEEeChhhhccccc
Q 027791          127 -----IFALLSKRLEEGYYRGESGFILDGIPRT------------RIQAVSLEF----CYTMALAFLFLFLYGCCVIIGS  185 (219)
Q Consensus       127 -----i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~------------~~qa~~l~~----~~~pd~VI~L~~~~e~l~~~~~  185 (219)
                           ...++...+.     .+..+|.|.|..+            ......+..    ...||++|+|++|++++     
T Consensus        76 ~~~~~~~~~i~~~l~-----~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~-----  145 (210)
T d4tmka_          76 ARVQLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVG-----  145 (210)
T ss_dssp             HHHHHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-----
T ss_pred             HHHHHHHHHHHHHHH-----cCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHH-----
Confidence                 1111122222     2345677866422            111111111    24799999999999999     


Q ss_pred             chhhhhhcCCCC
Q 027791          186 VILNEQVDGSLC  197 (219)
Q Consensus       186 ~~~~Rl~~R~~~  197 (219)
                        .+|+.+|...
T Consensus       146 --~~Ri~~R~~~  155 (210)
T d4tmka_         146 --LKRARARGEL  155 (210)
T ss_dssp             --HHHHHHHSSC
T ss_pred             --HHHhhhcccc
Confidence              9999888643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.16  E-value=5.8e-12  Score=97.94  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCC-----CeeccchhHHhhcCCCchh--HHHHHHH-HHcCCcccHHHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEV-----PHISMGSLVRQELSPRSAL--YKQIANA-VNEGKLVPEDVIFALLSKRL  135 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~-----~~Is~~dllr~~~~~~s~l--g~~i~~~-l~~g~~ip~e~i~~Ll~~~l  135 (219)
                      ..|+|.|+|||||||+++.|++.|+.     ++++.++..+.........  ....... .............. +....
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG-IAEEA   80 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHH-HHHHH
Confidence            35678899999999999999999854     3455566655543221110  0000000 00000001111111 22222


Q ss_pred             HhccccCCCeEEEeCccCCHHHH-------HHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCCCC
Q 027791          136 EEGYYRGESGFILDGIPRTRIQA-------VSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSLCL  198 (219)
Q Consensus       136 ~~~~~~~~~g~IlDG~Pr~~~qa-------~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~~~  198 (219)
                      ..   ....++++|+++....+.       ..+.....|+.+|+|+++++++       ++|+.+|....
T Consensus        81 ~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-------~~R~~~r~~~~  140 (194)
T d1nksa_          81 RA---GGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKII-------LSRQKRDTTRN  140 (194)
T ss_dssp             HH---TCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHH-------HHHHHHCTTTC
T ss_pred             HH---hCCCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHH-------HHHHHHhhhcc
Confidence            22   245678888776432211       1122223689999999999999       99998876543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.15  E-value=8.4e-12  Score=100.57  Aligned_cols=41  Identities=17%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      +.++|.|.|||||||||+|+.||++||++|||+|+++|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            35778899999999999999999999999999999999754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=3.2e-11  Score=95.52  Aligned_cols=121  Identities=14%  Similarity=0.040  Sum_probs=71.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHH---------------HHHHHHHcCC-c--cc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYK---------------QIANAVNEGK-L--VP  123 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~---------------~i~~~l~~g~-~--ip  123 (219)
                      .|+.|.|+|++||||||+|+.| +++|++++++|++.+.......+...               .+.+.+-... .  --
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            5789999999999999999999 56999999999888775543221111               1111110000 0  00


Q ss_pred             HHHHHHHHHHHHHhcc-ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 EDVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ~e~i~~Ll~~~l~~~~-~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ...+.......+.... ......+|+|+.+.....   +  ...+|.+|+++||+++.       .+|+.+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~---~--~~~~d~vI~v~a~~e~r-------~~Rl~~R~  141 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG---W--EGRLHGTLLVAAPLEER-------VRRVMARS  141 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT---C--GGGSSEEEEECCCHHHH-------HHHHHTTT
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeecccccc---c--cccceeEEEEecchhhH-------HHHHHhcc
Confidence            1112222222222111 123456778875322111   1  12468999999999999       99999984

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.10  E-value=3.4e-11  Score=92.38  Aligned_cols=123  Identities=9%  Similarity=-0.023  Sum_probs=63.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc-hhHHhhcCCCchhHHHHHHHHHcCCc-cc-H--HHHHHHHHHHHHhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG-SLVRQELSPRSALYKQIANAVNEGKL-VP-E--DVIFALLSKRLEEG  138 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~-dllr~~~~~~s~lg~~i~~~l~~g~~-ip-~--e~i~~Ll~~~l~~~  138 (219)
                      ..|+|.|+|||||||+|+.|+++++.++++++ |.+........ ........+..+.. .. +  ..+...+...+...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKM-QSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGG-GTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccc-cchhHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            46888899999999999999999998876543 33333221100 00000000000100 00 1  11112222111111


Q ss_pred             cccCCCeEEEeC-ccCCHHHHHHHHh--hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          139 YYRGESGFILDG-IPRTRIQAVSLEF--CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       139 ~~~~~~g~IlDG-~Pr~~~qa~~l~~--~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                       ......++++. +.......+.+..  ......+|+|++|++++       ++|...|.
T Consensus        83 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~-------~~R~~~R~  134 (178)
T d1qhxa_          83 -ARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA-------EGRETARG  134 (178)
T ss_dssp             -HHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHH-------HHHHHHTS
T ss_pred             -HhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHH-------HHHHHhcC
Confidence             12234566665 3233322222222  13456789999999999       99998885

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.1e-10  Score=87.68  Aligned_cols=111  Identities=10%  Similarity=0.044  Sum_probs=61.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      .|+|+|||||||||+|+.||++||+++++.++..............   +..       .+.....+.............
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~   73 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVF---DLE-------GEEGFRDREEKVINELTEKQG   73 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHH---HHH-------HHHHHHHHHHHHHHHHHTSSS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchh---hhh-------hhhHHHHHHHHHHHhhccccc
Confidence            4888999999999999999999999999998876654332111111   100       111111111111111111234


Q ss_pred             eEEEeCccC--CHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          145 GFILDGIPR--TRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       145 g~IlDG~Pr--~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .++..+...  .......+..   ....+++.++++++       ..|+.++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~-------~~r~~~~~  116 (169)
T d1kaga_          74 IVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQ-------LARTQRDK  116 (169)
T ss_dssp             EEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHH-------HSCC----
T ss_pred             eEeeccchhhhhhhhhHHhhh---cceeeeccCcHHHh-------hhHhhhcc
Confidence            455544432  2222222322   36789999999999       88887654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=2e-10  Score=92.78  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHc-----CCccc---------------
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVP---------------  123 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~-----g~~ip---------------  123 (219)
                      ..|.|+|++||||||+|+.|. ++|++++++|++.++.+..+.+....+.+.+..     ...+.               
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            367799999999999999985 789999999999999888766655555443221     11111               


Q ss_pred             ---HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          124 ---EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       124 ---~e~i~~Ll~~~l~~~~~-~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                         +.+++.++.+.+.+... .....++++. |.-.+ ...   ....|.+|++++++++.       .+|+.+|.
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll~e-~~~---~~~~~~iI~V~a~~e~r-------~~R~~~R~  146 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVE-NSL---YKKANRVLVVDVSPETQ-------LKRTMQRD  146 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTT-TTG---GGGCSEEEEEECCHHHH-------HHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eeccc-ccc---cccCCEEEEEeCCHHHH-------HHHHHHhh
Confidence               12344444444433211 1234556654 32211 100   12468899999999999       99998884

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=2.5e-09  Score=86.78  Aligned_cols=122  Identities=11%  Similarity=0.030  Sum_probs=68.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCC-cccHHHHHHHH-HH------
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-LVPEDVIFALL-SK------  133 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~-~ip~e~i~~Ll-~~------  133 (219)
                      ++..|+|.|+.||||||+++.|++.+.-...-    ++. -..+++.++.+++.+.... .+++....-+. ..      
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~----~~~-p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~   76 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   76 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEE----EES-SCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEE----EEE-CCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHH
Confidence            68899999999999999999999998654331    222 2345778888988876543 33443322111 11      


Q ss_pred             HHHhccccCCCeEEEeCccCCHH--H---------HHHHHh----hCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          134 RLEEGYYRGESGFILDGIPRTRI--Q---------AVSLEF----CYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~Pr~~~--q---------a~~l~~----~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      .+... ...+..+|.|.|..+.-  |         ..++..    ...||++|+|+++++..       .+|..+|..
T Consensus        77 ~i~~~-l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~-------~~r~~~~~~  146 (214)
T d1tmka_          77 KIKKD-LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDN-------NAEKSGFGD  146 (214)
T ss_dssp             HHHHH-HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC-----------------CCS
T ss_pred             HHHHH-HhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHH-------HHHhcccch
Confidence            12111 12345688897754311  1         111111    23899999999999998       888666543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=8.7e-10  Score=87.61  Aligned_cols=120  Identities=15%  Similarity=0.104  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCeeccchhHHhhcCCCchhHHHHHHHHHcCCccc----HHHHHHHHHHHH-
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP----EDVIFALLSKRL-  135 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip----~e~i~~Ll~~~l-  135 (219)
                      |+|+|.|++||||||+++.|+++|   |.+++-+.    . -..+++.+..+......+....    ......+..... 
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~----~-P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA----F-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE----S-SCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe----c-CCCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            579999999999999999999977   66665321    1 1123455555554443332111    111111110000 


Q ss_pred             -----HhccccCCCeEEEeCccCCHHH-----------------HHHHHhh----CCCcEEEEEEeChhhhcccccchhh
Q 027791          136 -----EEGYYRGESGFILDGIPRTRIQ-----------------AVSLEFC----YTMALAFLFLFLYGCCVIIGSVILN  189 (219)
Q Consensus       136 -----~~~~~~~~~g~IlDG~Pr~~~q-----------------a~~l~~~----~~pd~VI~L~~~~e~l~~~~~~~~~  189 (219)
                           .......+..+|+|-++.+...                 ...+...    ..||++|+|++++|++       .+
T Consensus        76 ~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~-------~~  148 (208)
T d1gsia_          76 GAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELA-------GE  148 (208)
T ss_dssp             TTHHHHHHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHH-------HH
T ss_pred             HHHHhHHHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHH-------HH
Confidence                 0000123456888977543211                 1111111    3689999999999999       99


Q ss_pred             hhhcCC
Q 027791          190 EQVDGS  195 (219)
Q Consensus       190 Rl~~R~  195 (219)
                      |+.+|.
T Consensus       149 Ri~~R~  154 (208)
T d1gsia_         149 RSRGRA  154 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHhhh
Confidence            998884

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=3e-10  Score=89.88  Aligned_cols=117  Identities=14%  Similarity=0.098  Sum_probs=60.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC-----eeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP-----HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE  137 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~-----~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~  137 (219)
                      |..|+++|.|||||||+|+.|++.++..     +++.| .+|.........................+.....+...+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG-QYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc-ceehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            5789999999999999999999988543     44444 45554432111000000000000000111222222222221


Q ss_pred             ccccCCCeEEEeCccCCHHHHHHHHh----hCCCcEEEEEEeChhhh
Q 027791          138 GYYRGESGFILDGIPRTRIQAVSLEF----CYTMALAFLFLFLYGCC  180 (219)
Q Consensus       138 ~~~~~~~g~IlDG~Pr~~~qa~~l~~----~~~pd~VI~L~~~~e~l  180 (219)
                      .......-+|+|+...+..+.+.+..    ...+..++...++++.+
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEV  127 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHH
Confidence            11123445788987766665555433    23455677788888777

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=2.9e-09  Score=83.89  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=29.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      ..+|+.|+|.|+.||||||+++.|++.++-..+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            468899999999999999999999999876554

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.76  E-value=5.6e-08  Score=78.53  Aligned_cols=114  Identities=18%  Similarity=0.069  Sum_probs=66.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc----CCCee-ccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHH--HH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHI-SMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SK  133 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l----g~~~I-s~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll--~~  133 (219)
                      .+++.|.|+|.|||||||+|+.|++++    +.+.+ --+|.+|+.+.........-+.          +....+.  .+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~----------~~~~r~~~~a~   91 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRN----------ENIRRIAEVAK   91 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHH----------HHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHH----------HHHHHHHHHHH
Confidence            678899999999999999999999765    44443 2345677766432111111111          1111111  11


Q ss_pred             HHHhccccCCCeEEEeCccCCHHHHHHHHh----------hCCCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          134 RLEEGYYRGESGFILDGIPRTRIQAVSLEF----------CYTMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       134 ~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~----------~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      .+..    ....+|++.........+.+.+          ...+...||++||.+++       .+|-.++.
T Consensus        92 ~~~~----~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~-------~~Rd~k~~  152 (208)
T d1m7ga_          92 LFAD----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA-------EQRDPKGL  152 (208)
T ss_dssp             HHHH----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHH-------HTSCTTCH
T ss_pred             HHhc----cCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHH-------HHhhcccc
Confidence            2222    3456777764333332222221          12456789999999999       89876664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.9e-09  Score=84.53  Aligned_cols=117  Identities=13%  Similarity=0.071  Sum_probs=66.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC----------CeeccchhHHhhcCCCchhHHHHHHHHHcCC-------cccHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV----------PHISMGSLVRQELSPRSALYKQIANAVNEGK-------LVPED  125 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~----------~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~-------~ip~e  125 (219)
                      |..|.|.|++||||||+++.|++.++.          .+|++|+..+...    . ....  ....+.       ....+
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~----~-~~~~--~~~~~~~~~~~~~~~~~~   74 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT----S-EQKA--KALKGQFNFDHPDAFDNE   74 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC----H-HHHH--HHHTTCSCTTSGGGBCHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccc----h-hhhh--hhhhcccccCCcHHHHHH
Confidence            678889999999999999999999864          3566666543211    0 0000  011111       11123


Q ss_pred             HHHHHHHHHHHhcc-------------------ccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccc
Q 027791          126 VIFALLSKRLEEGY-------------------YRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSV  186 (219)
Q Consensus       126 ~i~~Ll~~~l~~~~-------------------~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~  186 (219)
                      .+...+....+...                   .....-+|++|.+.-.+ .. +..  .+|+.|++++++++.      
T Consensus        75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~-~~-l~~--~~D~~i~v~~~~~~~------  144 (213)
T d1uj2a_          75 LILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-QE-VRD--LFQMKLFVDTDADTR------  144 (213)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-HH-HHH--HCSEEEEEECCHHHH------
T ss_pred             HHHhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhcc-HH-HHh--hhheeeeecCCHHHH------
Confidence            33333332221110                   01234578888764221 11 111  269999999999999      


Q ss_pred             hhhhhhcCCCC
Q 027791          187 ILNEQVDGSLC  197 (219)
Q Consensus       187 ~~~Rl~~R~~~  197 (219)
                       ++|...|...
T Consensus       145 -~~R~~~Rd~~  154 (213)
T d1uj2a_         145 -LSRRVLRDIS  154 (213)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHHH
Confidence             8988777543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=8.8e-09  Score=80.13  Aligned_cols=43  Identities=23%  Similarity=0.185  Sum_probs=35.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      +.+++.|+|+|+|||||||+|+.|+++++.++++.+.+..+..
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~   58 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   58 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhh
Confidence            3578999999999999999999999999888777766554443

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.9e-08  Score=79.01  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      +|.+|+|.|+.||||||+++.|++.++-..+.
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~i~   32 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA   32 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcCCc
Confidence            36789999999999999999999999776654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.58  E-value=1.1e-08  Score=78.10  Aligned_cols=35  Identities=11%  Similarity=0.085  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      -...+|+|+|+|||||||+|+.|+++||.++++.+
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            35578999999999999999999999999998654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.57  E-value=3.2e-08  Score=80.70  Aligned_cols=38  Identities=16%  Similarity=0.173  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLV   98 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dll   98 (219)
                      ..|..|+|.||||+||||+|+.||++++.  ..++++++.
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            45667999999999999999999999855  455665543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.55  E-value=1.3e-07  Score=71.65  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      .+|+.|+|+|+|||||||+|+.|+++|+..+++
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~   36 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGR   36 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            578999999999999999999999999654443

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2e-07  Score=74.85  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ++.+|+|.|+.||||||+++.|++.|.-
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4678999999999999999999998854

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.40  E-value=6.2e-07  Score=77.45  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .++|.|.|+.||||||+++.|++.++..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            4689999999999999999999988653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=4.4e-09  Score=81.81  Aligned_cols=31  Identities=19%  Similarity=0.106  Sum_probs=26.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +..++.|.|.|++||||||+|+.|++.++..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            3567888999999999999999999987543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.33  E-value=1.6e-06  Score=74.91  Aligned_cols=27  Identities=19%  Similarity=0.096  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ..++|+|.|+.||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            468999999999999999999999874

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.30  E-value=3.8e-07  Score=78.75  Aligned_cols=28  Identities=18%  Similarity=0.071  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      ..++|.|.|+.||||||+++.|++.++.
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4568999999999999999999988754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=4e-06  Score=65.03  Aligned_cols=32  Identities=28%  Similarity=0.278  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +..|+|+||+||||||+++.|.+++.-.+++.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~   33 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV   33 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEE
Confidence            45788999999999999999999874334433

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=2.8e-06  Score=66.44  Aligned_cols=118  Identities=11%  Similarity=0.009  Sum_probs=64.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCCCe-eccchhHHhhcCC---C----chhHHHHHHHHHcCCcccHH--------HHHH
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSP---R----SALYKQIANAVNEGKLVPED--------VIFA  129 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~~~-Is~~dllr~~~~~---~----s~lg~~i~~~l~~g~~ip~e--------~i~~  129 (219)
                      |+|+||+||||+|+++.|++++.-.+ +.....-|.....   +    ...-+.....+.+|..+...        +...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            78999999999999999999874211 1110111111110   0    01123445555555533210        0111


Q ss_pred             HHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEEEEEeChhhhcccccchhhhhhcCCC
Q 027791          130 LLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAFLFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       130 Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      -+...+.+     +..+|+|+.|....+...+.. ..+..++++..+.+++       .+|+.+|..
T Consensus        84 ~i~~~~~~-----g~~~i~~~~~~~~~~lk~~~~-~~~~~i~~~~~~~e~l-------~~RL~~Rg~  137 (186)
T d1gkya_          84 SVKQVSKS-----GKTCILDIDMQGVKSVKAIPE-LNARFLFIAPPSVEDL-------KKRLEGRGT  137 (186)
T ss_dssp             HHHHHHHH-----TSEEEEECCHHHHHHHHTCGG-GCCEEEEEECSCHHHH-------HHHHHHHSC
T ss_pred             hHHHHhcC-----CCeEEecchHHHHHHHHHhhc-ccceEEEecCCcHHHH-------HHHHHhhcc
Confidence            12333332     346788888654444433221 2355677777888999       999998854

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.13  E-value=6.9e-07  Score=72.18  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=33.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL  102 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~  102 (219)
                      .+|.|+|++||||||+|+.|++++|+++++.+|.+...+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            578899999999999999999999999999766555544

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.4e-06  Score=73.02  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHcC-------CCeeccchhHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLVR   99 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~lg-------~~~Is~~dllr   99 (219)
                      ...|..|.|.|++||||||+|+.|++.+.       +.+|++|+.+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            36788999999999999999999999763       45688998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=1.9e-06  Score=69.21  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +.++|+||||+||||+|+.|+++++.+++.+
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~   66 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHVT   66 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCcccc
Confidence            3588999999999999999999999987754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=7.8e-06  Score=64.19  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcCC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      |+|+||+||||+|+++.|+++++-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            789999999999999999998753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.94  E-value=1.8e-06  Score=73.14  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCC--eeccchhHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVR   99 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~--~Is~~dllr   99 (219)
                      .+.+.|.|.|++||||||+++.|.+.+   ++.  +|+.|+..+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            355689999999999999999998866   454  788888754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=4.1e-06  Score=67.33  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ..++|.||||+||||+|+.+++++++++...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            4588999999999999999999999987654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.84  E-value=4e-06  Score=63.78  Aligned_cols=27  Identities=22%  Similarity=0.471  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      |+|+|+|||||||||+.+.|+..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            689999999999999999999988654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.83  E-value=5.5e-06  Score=68.11  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      +.-|+|.||||+|||++++.||++++++++.++
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            345899999999999999999999999988664

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=7.6e-06  Score=67.77  Aligned_cols=39  Identities=21%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeec--cchhHHh
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQ  100 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is--~~dllr~  100 (219)
                      .+.-++|+||||+|||++++.||++++.++++  ..+++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~   84 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM   84 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            34568999999999999999999999998854  5555543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.80  E-value=7.8e-06  Score=67.29  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeecc--chhHHh
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ  100 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~--~dllr~  100 (219)
                      +.-++|.||||+|||++++.|+++++++++.+  .+++..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~   81 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   81 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            34589999999999999999999999998654  466544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=7e-05  Score=59.64  Aligned_cols=119  Identities=11%  Similarity=0.032  Sum_probs=62.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC--CeeccchhHHhhcCCC---c----hhHHHHHHHHHcCCcccHH--------
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPR---S----ALYKQIANAVNEGKLVPED--------  125 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~--~~Is~~dllr~~~~~~---s----~lg~~i~~~l~~g~~ip~e--------  125 (219)
                      +..|+|+||+||||+|+.+.|.+++..  ..+++.---|...+..   .    ..-++..+.+.+|..+.-.        
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            567899999999999999999998742  1122211122221111   0    1123455566666543210        


Q ss_pred             HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHHhhCCCcEEE-EEEeChhhhcccccchhhhhhcCCC
Q 027791          126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAVSLEFCYTMALAF-LFLFLYGCCVIIGSVILNEQVDGSL  196 (219)
Q Consensus       126 ~i~~Ll~~~l~~~~~~~~~g~IlDG~Pr~~~qa~~l~~~~~pd~VI-~L~~~~e~l~~~~~~~~~Rl~~R~~  196 (219)
                      +-..-+...+.     .+..+|+|.-+.-   +..+.....-..+| ++-.+.+++       .+|+.+|..
T Consensus        82 t~~~~v~~~~~-----~g~~~ildid~~g---~~~lk~~~~~~~~ifi~pps~~~l-------~~RL~~Rg~  138 (205)
T d1s96a_          82 TSREAIEQVLA-----TGVDVFLDIDWQG---AQQIRQKMPHARSIFILPPSKIEL-------DRRLRGRGQ  138 (205)
T ss_dssp             EEHHHHHHHHT-----TTCEEEEECCHHH---HHHHHHHCTTCEEEEEECSSHHHH-------HHHHHTTSC
T ss_pred             cccchHHHHHh-----cCCceeecCcHHH---HHHHHhhhcccceeeeeccchHHH-------HHHHHhcCC
Confidence            00111222333     2467888866432   34443332222344 444555677       889998853

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=1e-05  Score=65.09  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      .....++|.||||+||||+++.||+.+++.++.
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhhc
Confidence            344578899999999999999999999887653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.70  E-value=1.1e-05  Score=68.21  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCee--ccchhH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLV   98 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dll   98 (219)
                      .-++|+||||+|||.+|+.||+.++.+.+  ++.++.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~   86 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred             ceEEEECCCCCCHHHHHHHHhhccccchhcccccccc
Confidence            45789999999999999999999988755  455554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.3e-05  Score=59.96  Aligned_cols=29  Identities=14%  Similarity=0.021  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~I   92 (219)
                      +.+.|+|+|||||||+++.|++++   |+.+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~   34 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPG   34 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            468899999999999999999876   55443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.7e-05  Score=59.48  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .|+|+|+||+||||+++.+++.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            58999999999999999999987

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=1.9e-05  Score=70.28  Aligned_cols=33  Identities=33%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      .+..|+++||+|||||.+|+.||+.+++|++..
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            455899999999999999999999999999876

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.1e-05  Score=63.69  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=28.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .-++|.||||+|||++++.+|.+++.+++.++
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            34899999999999999999999999877653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=3.1e-05  Score=65.24  Aligned_cols=39  Identities=13%  Similarity=0.109  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc--------CCCeeccchhHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLVR   99 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l--------g~~~Is~~dllr   99 (219)
                      .+|..|.|.|++||||||++..|.+.+        .+.+||+||++.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~   71 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   71 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCC
Confidence            467888999999999999998876553        345689999753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=2.9e-05  Score=64.15  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      +.-|+|.||||+|||++++.+|.++|.+++.++
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            445899999999999999999999999877653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.42  E-value=4.8e-05  Score=65.89  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++..++|.||||+|||++|..|++.+|.+++++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            556899999999999999999999999999876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.41  E-value=2.6e-05  Score=62.11  Aligned_cols=27  Identities=30%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      ..++|.||||+||||+++.++++++..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~~   72 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFGE   72 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            358899999999999999999987543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.33  E-value=7.7e-05  Score=59.39  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ..+..++|.||||+||||+++.|++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            3456799999999999999999999873

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=4.9e-05  Score=60.34  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCe
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPH   91 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~   91 (219)
                      .++|.||||+||||+++.|+++++...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~~   64 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGRS   64 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhccc
Confidence            488999999999999999999987654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00014  Score=61.48  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCee--ccchh
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSL   97 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~I--s~~dl   97 (219)
                      .++|+||||+|||.+|+.||+.++.+++  +++++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~   88 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY   88 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEeccccc
Confidence            5789999999999999999999988776  44444

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00017  Score=57.99  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +.+|..|+|+||+|+||||....||.++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567788899999999999999999876

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00012  Score=58.39  Aligned_cols=25  Identities=20%  Similarity=0.174  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+.++|+||||+||||+++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3458899999999999999999986

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00014  Score=57.34  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++|.||||+||||+++.+++++
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            48899999999999999999985

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00015  Score=57.24  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .++|.||||+||||+++.++++++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~~   62 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYGK   62 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhcC
Confidence            47899999999999999999987543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.03  E-value=0.00019  Score=54.10  Aligned_cols=23  Identities=13%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .|.|+|.+||||||+..+|..+|
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            45699999999999999999876

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.01  E-value=0.0002  Score=56.39  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +.|+|+|++||||||+.++|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            468999999999999999998755

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.00  E-value=0.00013  Score=58.28  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++|.||||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45567999999999999999986

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.99  E-value=0.0003  Score=56.47  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..|..|+|+||+|+||||.+..||..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467788899999999999999999876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.91  E-value=0.0005  Score=54.32  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|.|+||+|||++|..++...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56778899999999999999999875

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.90  E-value=0.0049  Score=44.57  Aligned_cols=98  Identities=22%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCeeccchhHHhhcCCCchhHHHHHHHHHcCCcccHHHHHHHHHHHHHhccccCCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES  144 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~dllr~~~~~~s~lg~~i~~~l~~g~~ip~e~i~~Ll~~~l~~~~~~~~~  144 (219)
                      .|++.||..+=|||++..|++++.+|+|.-..+-         +.+       .|    ++-+++    .++..  ..+.
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfe---------lak-------sg----neklfe----hfnkl--aded   55 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE---------LAK-------SG----NEKLFE----HFNKL--ADED   55 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHH---------HHH-------HC----HHHHHH----HHHHH--TTCC
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhh---------hhh-------cc----CHHHHH----HHHhh--cccc
Confidence            4789999999999999999999999998543321         100       11    111111    12222  1346


Q ss_pred             eEEEeCcc---------------CCHHHHHHHHhhC-CCcEEEEEEeChhhhcccccchhhhhhcCC
Q 027791          145 GFILDGIP---------------RTRIQAVSLEFCY-TMALAFLFLFLYGCCVIIGSVILNEQVDGS  195 (219)
Q Consensus       145 g~IlDG~P---------------r~~~qa~~l~~~~-~pd~VI~L~~~~e~l~~~~~~~~~Rl~~R~  195 (219)
                      ++|+|.|.               .+..|...++... ....|++|.+++.++       .+|+.-|.
T Consensus        56 nviidrfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvi-------kkrlrvrg  115 (164)
T d2axpa1          56 NVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVI-------KKRLRVRG  115 (164)
T ss_dssp             SEEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHH-------HHHHHHHT
T ss_pred             ceeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHH-------HHHhcccc
Confidence            78888764               3456666665432 345799999999999       99997664

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00048  Score=55.21  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+|..|+|+||+|+||||....||..+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            457788899999999999999999766

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.84  E-value=0.00043  Score=55.33  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++..|+|+||+||||||.+..||..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            466788899999999999999999876

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.81  E-value=0.00038  Score=50.90  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++|+|+|+||+||||+..+|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999999754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.73  E-value=0.00037  Score=59.32  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=27.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC--CCe--eccchhHHh
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE--VPH--ISMGSLVRQ  100 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg--~~~--Is~~dllr~  100 (219)
                      ++|+||||+|||.+++.||.+.+  +++  ++..+++..
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~  164 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG  164 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTT
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhc
Confidence            45579999999999999999975  444  455666654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.66  E-value=0.00069  Score=58.37  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      ++..++|+||+|+|||.+|++||+.++.+.+-.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~   99 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS   99 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeeh
Confidence            344599999999999999999999998886643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.62  E-value=0.0011  Score=52.79  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+-.|+|.||+|+||||.+..||..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567889999999999999999876

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.58  E-value=0.00084  Score=53.02  Aligned_cols=30  Identities=17%  Similarity=0.036  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHcCCCeec
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS   93 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~lg~~~Is   93 (219)
                      ..++|.|++|+||||+++.+++..+..+.-
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~   59 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPYIY   59 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCeEE
Confidence            468899999999999999999998776543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00079  Score=50.70  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..+.|.|+|||||||+|..++...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            66788999999999999999998764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.53  E-value=0.00072  Score=50.38  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+..+|+|+|.||+||||+..+|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5778999999999999999999854

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.52  E-value=0.00092  Score=50.18  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           59 PPRRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        59 ~~~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+.+.++|+|+|.||+||||+..+|..
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            346779999999999999999998843

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00078  Score=51.96  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .|+|+||+||||+|+.+.|.+++
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            47889999999999999999876

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.41  E-value=0.0014  Score=50.08  Aligned_cols=30  Identities=17%  Similarity=0.213  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      .++..|++.|.-||||||+++.+++.+|+.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            356789999999999999999999999884

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.00082  Score=53.79  Aligned_cols=28  Identities=29%  Similarity=0.307  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEVP   90 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~~   90 (219)
                      +..++|.||||+||||+++.+++.++..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            4458899999999999999999988654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.37  E-value=0.0011  Score=49.39  Aligned_cols=25  Identities=12%  Similarity=0.222  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +.++|+|+|+||+||||+..+|...
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCC
Confidence            3578999999999999999998653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.31  E-value=0.0014  Score=48.98  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+-++|+|+|.|||||||+..+|..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            3558999999999999999999875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0014  Score=51.52  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .+..++|.||||+||||+++.+++.+..
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            3456999999999999999999998754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0014  Score=55.60  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..+|-|+|+|||||||+...|...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998765

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.0012  Score=55.61  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=22.9

Q ss_pred             CCCe-EEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGV-QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~-~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+|. .++|.||+|+|||.+|+.||+.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            3444 57788999999999999999987

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.22  E-value=0.0017  Score=54.98  Aligned_cols=27  Identities=37%  Similarity=0.526  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..+|-|+|+||+||||+...|.+.+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.20  E-value=0.0017  Score=47.39  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +-++|+|+|.||+||||+..++...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC
Confidence            4588999999999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.09  E-value=0.00096  Score=55.88  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++|.|+||+||||+++.+++-+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            58999999999999999999866

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0019  Score=46.67  Aligned_cols=22  Identities=14%  Similarity=0.146  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +|+|+|+|++||||+..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.002  Score=47.42  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +++|+|+|.|++||||+..+|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            47899999999999999999974

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0022  Score=47.72  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .++|+|+|.||+||||+..++..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0026  Score=47.86  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           60 PRRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        60 ~~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      |.+..+|+|+|.+|+||||+..++...
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhC
Confidence            356689999999999999999998763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.97  E-value=0.0024  Score=50.07  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++..++|.|+|||||||++..++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            66788999999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0017  Score=50.47  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++..++|.|+|||||||++..++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            6678889999999999999988753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.88  E-value=0.003  Score=49.07  Aligned_cols=34  Identities=26%  Similarity=0.245  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      .+.-|+|.|++|+||||++..|.++ |...++-|.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~   46 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIADDR   46 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCe
Confidence            4566899999999999999998875 888775543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0016  Score=48.62  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ...++|+|+|.|++||||+..+|..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999998854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.003  Score=49.85  Aligned_cols=26  Identities=35%  Similarity=0.540  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....++++|+||+|||++.+.||++.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHH
Confidence            33468999999999999999999865

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0036  Score=48.86  Aligned_cols=26  Identities=12%  Similarity=-0.033  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++..++|.|+||+|||++|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            37788999999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.78  E-value=0.0031  Score=46.87  Aligned_cols=23  Identities=13%  Similarity=0.200  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++|+|+|++++||||+..+|...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            68999999999999999999764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.78  E-value=0.0027  Score=50.30  Aligned_cols=35  Identities=14%  Similarity=0.099  Sum_probs=27.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc-----CCCeeccchhHHh
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ  100 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l-----g~~~Is~~dllr~  100 (219)
                      ++|.|++|+|||.+++.++.++     .+.+++..++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   78 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH
Confidence            6799999999999999999876     3445666555443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0032  Score=47.72  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++.++|+|+|.+|+||||+..++.+.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            46789999999999999999998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0033  Score=47.63  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.||+||||+..+|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            6899999999999999999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.68  E-value=0.0024  Score=47.89  Aligned_cols=25  Identities=12%  Similarity=0.179  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+.++|+++|+|++||||+..++..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            5678999999999999999999864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.62  E-value=0.0037  Score=47.72  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La   84 (219)
                      ++|.|+|.||+||||+...|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            479999999999999999996

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.61  E-value=0.0039  Score=46.57  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+||||+..++...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            57999999999999999999763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0039  Score=46.29  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+++|.||+||||+..++...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999998763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.004  Score=46.70  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.||+||||+..++...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            57999999999999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0041  Score=46.41  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.+|+||||+..++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5799999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.55  E-value=0.0045  Score=47.73  Aligned_cols=26  Identities=15%  Similarity=-0.063  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.++|.|+||+|||+++..++...
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            67789999999999999999999755

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0042  Score=50.22  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+--
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            5567899999999999999999753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0042  Score=46.43  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+||||+.+++...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999999863

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0044  Score=46.58  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.||+||||+..++..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999865

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.51  E-value=0.0047  Score=47.54  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccch
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS   96 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~d   96 (219)
                      .+.-|+|.|++|+||||++-.|.++ |...|+-|-
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~   47 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDN   47 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCe
Confidence            4567999999999999999888776 887775443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.51  E-value=0.0038  Score=48.52  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~~   95 (219)
                      .+.-++|.|++|+||||++..|.+ .|...++-|
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~-~G~~lvaDD   46 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDD   46 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCceecCC
Confidence            456689999999999999999875 488777554

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0046  Score=45.68  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+|+|+|.+|+||||+..++..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            45799999999999999999976

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0045  Score=46.32  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.||+||||+..++..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.46  E-value=0.0036  Score=51.12  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|++||||||+++.|.-.+
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            356689999999999999999997644

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0049  Score=50.77  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....++++|+||+|||++.+.||+++
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            33568899999999999999999875

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.45  E-value=0.027  Score=43.72  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..++|.|+||+||+|+|..+++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0041  Score=50.46  Aligned_cols=27  Identities=15%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|...+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            356789999999999999999998755

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0043  Score=46.09  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +..+|+|+|.+|+||||+..++..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            557899999999999999999875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.42  E-value=0.0041  Score=50.38  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+|+.||||||+.+.|+-.+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            366789999999999999999997654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0051  Score=45.66  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|.+|+||||+..++...
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999999764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.39  E-value=0.0037  Score=47.12  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      .+..+|+|+|.||+||||+..+|.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            567899999999999999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0053  Score=46.39  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.+|+||||+..++..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0049  Score=46.99  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +.|+|+|+|++||||+..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0048  Score=50.26  Aligned_cols=27  Identities=33%  Similarity=0.374  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-++.|+|+.||||||+.+.|.-.+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            366789999999999999999997654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0057  Score=45.43  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.||+||||+..++...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0062  Score=45.46  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0058  Score=45.75  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.|++||||+..++..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999999876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.26  E-value=0.005  Score=45.92  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .|+|+|.|++||||+..+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999964

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.25  E-value=0.0047  Score=49.79  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+--
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            5567899999999999999988753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0056  Score=45.52  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +..+|+|+|.+|+||||+..++..
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            346899999999999999999976

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0049  Score=50.01  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .++-.+.|+||.||||||+.+.|+-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcC
Confidence            3556789999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.19  E-value=0.0057  Score=46.99  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++-.+.|.|+||+|||+++..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            667788999999999999977654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0064  Score=45.17  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.+|+||||+..++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.17  E-value=0.0056  Score=49.73  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+.|+||.||||||+.+.|+--+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            56689999999999999998644

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.16  E-value=0.0064  Score=49.29  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+--+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            55678899999999999999998644

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.16  E-value=0.0044  Score=48.68  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            45578899999999999999997643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.14  E-value=0.0061  Score=49.45  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+--+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45578899999999999999997543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0062  Score=50.37  Aligned_cols=27  Identities=19%  Similarity=0.194  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-.+.|+||.||||||+.+.|+-.+
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            356789999999999999999997654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.11  E-value=0.0097  Score=44.61  Aligned_cols=25  Identities=16%  Similarity=0.384  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ...++|.|+|.+++||||+..+|..
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3568999999999999999998864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0066  Score=45.26  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +..+|+|+|.||+||||+..++...
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999998763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.007  Score=45.09  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      -+|+|+|.+|+||||+..++...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47899999999999999999853

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.0076  Score=44.80  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++|+|+|.+|+||||+..++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.0071  Score=46.25  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+||||+..++...
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhhC
Confidence            67999999999999999998763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0075  Score=44.47  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +|+|+|.+|+||||+..++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999975

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0076  Score=44.70  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+||||+..++...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999998763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0075  Score=44.80  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      -+|+|+|.+|+||||+..++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999998875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.95  E-value=0.0078  Score=45.46  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNL   83 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~L   83 (219)
                      |-.+|+|+|.+||||||+..++
T Consensus         1 r~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHH
Confidence            3478999999999999999999

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0085  Score=44.97  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..++|+|+|.+|+||||+..++..
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            347899999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.92  E-value=0.0051  Score=49.62  Aligned_cols=26  Identities=19%  Similarity=0.491  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+--+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            55678999999999999999998643

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.90  E-value=0.0062  Score=45.49  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      -|+|+|.|++||||+..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999964

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0085  Score=44.88  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+||||+..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0084  Score=44.62  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+|+|+|.+++||||+..++..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999999866

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.85  E-value=0.0084  Score=46.03  Aligned_cols=22  Identities=14%  Similarity=-0.013  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .|+|+|+|++||||+..+|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999763

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0091  Score=44.27  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0085  Score=44.65  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      +|+|+|.+|+||||+.+++...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            6899999999999999998653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.0027  Score=46.58  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++|.|+|.|++||||+..+|..+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.73  E-value=0.0081  Score=49.09  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++-.+.|+|+.||||||+++.|+-
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            556788999999999999999974

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.71  E-value=0.0099  Score=44.33  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|+|+|.+|+||||+..++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.68  E-value=0.0047  Score=50.52  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++-++.|+|+.||||||+.+.|.-.+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            366789999999999999999987544

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.0098  Score=44.52  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      -+|+|+|.+|+||||+.+++..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0088  Score=45.50  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ..+|+|+|.+|+|||++..++.+.
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            468999999999999999998763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.64  E-value=0.0076  Score=50.73  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc--CCCeeccchh
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSL   97 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l--g~~~Is~~dl   97 (219)
                      .|+|.|++||||||+...|....  +..++.+.|-
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~  202 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  202 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeeccch
Confidence            48999999999999999998876  4456665553

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.58  E-value=0.0052  Score=49.95  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+--
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            5567999999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.56  E-value=0.011  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|+|+|.+|+|||++.+++.+.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999998774

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0097  Score=45.09  Aligned_cols=25  Identities=20%  Similarity=0.200  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...+|+|+|.+|+||||+..++...
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhC
Confidence            3468999999999999999998763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.53  E-value=0.013  Score=46.98  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++-.++|.|+||+||||++..++..
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            45678999999999999998888754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.39  E-value=0.01  Score=47.91  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55678899999999999999997543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.012  Score=43.99  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .|.|+|.||+||||+..+|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.35  E-value=0.017  Score=46.95  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ...|.|.|+.|.||||+|+.+.++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578899999999999999987763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.34  E-value=0.011  Score=47.56  Aligned_cols=15  Identities=13%  Similarity=0.219  Sum_probs=12.7

Q ss_pred             EEEEcCCCCChHHHH
Q 027791           66 WVLIGDPGVKKHVYA   80 (219)
Q Consensus        66 Ivl~G~PGSGKST~a   80 (219)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            567899999999864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.019  Score=43.54  Aligned_cols=30  Identities=17%  Similarity=0.142  Sum_probs=24.6

Q ss_pred             eEEEEEcC-CCCChHHHHHHHHHHc---CCCeec
Q 027791           64 VQWVLIGD-PGVKKHVYADNLSKLL---EVPHIS   93 (219)
Q Consensus        64 ~~Ivl~G~-PGSGKST~a~~La~~l---g~~~Is   93 (219)
                      .+++|+|. +|+||||++-.||..+   |..++-
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~   35 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            57899999 5999999999999876   665543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.0074  Score=45.15  Aligned_cols=23  Identities=35%  Similarity=0.417  Sum_probs=10.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      -.+|+|+|.+|+||||+.++|..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999988864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.20  E-value=0.013  Score=46.41  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCeecc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM   94 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~Is~   94 (219)
                      +.-.++|.|||++|||+++..|.+-++..+++.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            556788999999999999999999987666654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.014  Score=43.23  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .|.|+|.|++||||+..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999974

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.05  E-value=0.013  Score=47.57  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++-.+.|+||.||||||+.+.|+-.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            5567889999999999999998754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.99  E-value=0.015  Score=46.89  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ...++|+|+|.||+||||+...|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            3568999999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.01  Score=44.36  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      -+|+|+|.+|+||||+..++..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3789999999999999988765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.013  Score=46.94  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++-.+.|+||.||||||+.+.|+-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            566789999999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.93  E-value=0.02  Score=49.21  Aligned_cols=35  Identities=11%  Similarity=0.054  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC---CCeeccchhHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVR   99 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg---~~~Is~~dllr   99 (219)
                      .|+|.||.||||||....+-+.++   ..++++.|=+.
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE  197 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  197 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcc
Confidence            478999999999999888888763   34556555333

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.88  E-value=0.016  Score=47.02  Aligned_cols=15  Identities=13%  Similarity=0.233  Sum_probs=12.9

Q ss_pred             EEEEcCCCCChHHHH
Q 027791           66 WVLIGDPGVKKHVYA   80 (219)
Q Consensus        66 Ivl~G~PGSGKST~a   80 (219)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            668899999999765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.87  E-value=0.016  Score=46.64  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++-.+.|+||.||||||+.+.|+-.+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678899999999999999997644

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.85  E-value=0.012  Score=44.26  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .|.|+|+|++||||+..+|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999853

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.021  Score=41.55  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc----CCCeecc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL----EVPHISM   94 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l----g~~~Is~   94 (219)
                      ..+.-|+|.|.+||||+|+|..|...+    |-.+++.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtl   41 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKI   41 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEE
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEE
Confidence            567889999999999999999997766    3466653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.021  Score=42.46  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+|+++|.+|+||||+..++..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.75  E-value=0.015  Score=50.20  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..++++|+||+|||++.+.||.+.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHH
Confidence            346788999999999999999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.024  Score=42.71  Aligned_cols=24  Identities=13%  Similarity=0.129  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      -.+|+++|.+|+||||+..++...
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC
Confidence            479999999999999999988763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.019  Score=45.28  Aligned_cols=26  Identities=15%  Similarity=0.003  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +-+.++|+|..||||||+.+++.+..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            34678899999999999999998754

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.60  E-value=0.0038  Score=36.15  Aligned_cols=23  Identities=4%  Similarity=-0.464  Sum_probs=19.2

Q ss_pred             CCCCCCCCCccccc---------chhhhhhhh
Q 027791          194 GSLCLTCPCNTGWL---------CRKFLIKLW  216 (219)
Q Consensus       194 R~~~~~~g~~~~~~---------~~~~~~~~~  216 (219)
                      |++|+.||+.||..         |-.||+.|-
T Consensus         2 R~vc~~cG~~Yh~~~~pPk~~g~CD~cg~~L~   33 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLV   33 (37)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred             ceeeCCcCChhhhccCCccccCCccCCCCcCE
Confidence            78999999998875         788888763

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.56  E-value=0.023  Score=42.40  Aligned_cols=25  Identities=12%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      -++|+|+|..|+||||+..++....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3689999999999999999997654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.024  Score=44.96  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +-..+|.|+||+||||++-.||...
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3467799999999999999988753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.025  Score=48.02  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=17.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNL   83 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~L   83 (219)
                      ....+|.|+||+||||+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            357889999999999887544

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.0046  Score=35.35  Aligned_cols=24  Identities=4%  Similarity=-0.391  Sum_probs=19.6

Q ss_pred             cCCCCCCCCCccccc---------chhhhhhhh
Q 027791          193 DGSLCLTCPCNTGWL---------CRKFLIKLW  216 (219)
Q Consensus       193 ~R~~~~~~g~~~~~~---------~~~~~~~~~  216 (219)
                      .|++|+.||+.||..         |-.||+.|-
T Consensus         1 GRr~c~~cG~~Yh~~~~PPk~~g~CD~cg~~L~   33 (35)
T d1e4va2           1 GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELT   33 (35)
T ss_dssp             TEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred             CccCCcCcCChhhhccCccccCCcccCCCCEee
Confidence            478999999999875         788888763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.34  E-value=0.015  Score=43.41  Aligned_cols=20  Identities=20%  Similarity=0.322  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 027791           66 WVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~   85 (219)
                      |.|+|.|++||||+..+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999863

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.033  Score=44.47  Aligned_cols=35  Identities=17%  Similarity=0.057  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc---CCCe--eccc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPH--ISMG   95 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l---g~~~--Is~~   95 (219)
                      ..|..|++.|.=|+||||++..||..+   |..+  ||.|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            356688899999999999988888876   5544  4543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.12  E-value=0.041  Score=39.16  Aligned_cols=31  Identities=10%  Similarity=-0.167  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      .-...+|.+|.|||||+++-.+..+.|..++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~vl   37 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL   37 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCcEE
Confidence            3355678999999999999777776666544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.11  E-value=0.025  Score=44.19  Aligned_cols=25  Identities=16%  Similarity=0.193  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+|+|+|.+|+||||+.+++....
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~   30 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH   30 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4689999999999999999986544

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.92  E-value=0.046  Score=44.50  Aligned_cols=29  Identities=14%  Similarity=0.146  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .+...+++.|||++|||+++..|.+.+|-
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            35567779999999999999999998855

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.037  Score=45.04  Aligned_cols=26  Identities=12%  Similarity=-0.001  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+....|.|+|||||||+|-.++...
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            66788899999999999999988765

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.67  E-value=0.034  Score=41.21  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      -++|+|+|..|+||||+.+++...
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            368999999999999999998654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.66  E-value=0.033  Score=44.71  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |+|.|++|+||+++|+.|.+..
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            7899999999999999998754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.53  E-value=0.033  Score=41.82  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+...|.++|.|.+||||+..+|..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHH
Confidence            3556899999999999999999974

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.24  E-value=0.012  Score=34.19  Aligned_cols=23  Identities=4%  Similarity=-0.370  Sum_probs=18.5

Q ss_pred             cCCCCCCCCCcccc---------cchhhhhhh
Q 027791          193 DGSLCLTCPCNTGW---------LCRKFLIKL  215 (219)
Q Consensus       193 ~R~~~~~~g~~~~~---------~~~~~~~~~  215 (219)
                      .|++|+.||+.||.         .|-.||+.|
T Consensus         1 GRr~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L   32 (38)
T d1akya2           1 GRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL   32 (38)
T ss_dssp             TEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CccCCcCccchhhhhccCcCcCCccCCCCCEe
Confidence            47899999999885         577788765

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.08  E-value=0.011  Score=33.71  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=19.5

Q ss_pred             cCCCCCCCCCcccc---------cchhhhhhhh
Q 027791          193 DGSLCLTCPCNTGW---------LCRKFLIKLW  216 (219)
Q Consensus       193 ~R~~~~~~g~~~~~---------~~~~~~~~~~  216 (219)
                      .|++|+.||..||.         .|-.||+.|.
T Consensus         1 GRr~C~~CG~~Yh~~~~pPk~~g~CD~cG~~L~   33 (35)
T d1zina2           1 GRRICRNCGATYHLIFHPPAKPGVCDKCGGELY   33 (35)
T ss_dssp             TEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred             CccCCcCcCchhccccCCCCCCCcCCCCCCCcc
Confidence            47899999999985         5888888763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.87  E-value=0.049  Score=43.46  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ++...+|+|++|+||||+...|...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            3457889999999999999998543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.84  E-value=0.05  Score=42.62  Aligned_cols=26  Identities=15%  Similarity=0.135  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      |++.|.|+|-|.+||||+...|....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            44569999999999999999987643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.11  Score=41.20  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ....|++.|.=|+||||++-.||..+
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            44567778999999999988877765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.27  E-value=0.041  Score=38.37  Aligned_cols=21  Identities=29%  Similarity=0.238  Sum_probs=17.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYAD   81 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~   81 (219)
                      .++...++.+|+|||||.++-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            456778899999999997663

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.16  E-value=0.073  Score=43.40  Aligned_cols=25  Identities=20%  Similarity=0.384  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ...|+|-|+|.|.+||||+-..|..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHC
Confidence            3568999999999999999999974

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=90.94  E-value=0.017  Score=32.85  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=18.6

Q ss_pred             cCCCCCCCCCcccc---------cchhhhhhh
Q 027791          193 DGSLCLTCPCNTGW---------LCRKFLIKL  215 (219)
Q Consensus       193 ~R~~~~~~g~~~~~---------~~~~~~~~~  215 (219)
                      .|++|+.||+.||.         .|-.||+.|
T Consensus         1 GR~~C~~CG~~Yh~~~~pPk~~g~CD~cg~~L   32 (35)
T d1s3ga2           1 GRRICKVCGTSYHLLFNPPQVEGKCDKDGGEL   32 (35)
T ss_dssp             SEEEETTTCCEEETTTBCCSBTTBCTTTCCBE
T ss_pred             CccCCcCcCchhccccCCCCCCCccCCCCCCc
Confidence            47899999999886         477888766

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.86  E-value=0.068  Score=45.74  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      ..+.+|.|+|.||+||||+...|-
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh
Confidence            356899999999999999999985

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.079  Score=43.78  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++.++.|+|++|+||||++..+++..
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999998743

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.077  Score=44.79  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=19.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ....++|+|++|||||+..+.+...
T Consensus        49 ~~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          49 EPRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCcHHHHHHHHHHH
Confidence            4456899999999999987655543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.016  Score=42.68  Aligned_cols=24  Identities=21%  Similarity=0.136  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ..+|+|+.||||||+...|.--++
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            456889999999999999986553

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.00  E-value=0.1  Score=42.07  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      +++|-|+|.|.+||||+-.+|..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            57899999999999999999984

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.82  E-value=0.096  Score=40.46  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      ...|.++|-+++||||+..+|....|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            36899999999999999999965443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.45  E-value=0.14  Score=41.09  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .++.++.|+|.|.+||||+...|..+-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccc
Confidence            577899999999999999999998654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.30  E-value=0.14  Score=41.67  Aligned_cols=27  Identities=19%  Similarity=0.047  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..+....|.|+||+||||+|..++...
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            366778899999999999998887654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.09  E-value=0.081  Score=42.34  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      .-+|+|+.||||||+.++|+=-+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            456999999999999998854443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.03  E-value=0.14  Score=41.65  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc---C--CCeeccc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG   95 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l---g--~~~Is~~   95 (219)
                      .+...-|.|+|||||||+|..++...   |  +.+|++.
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            56688899999999999999888754   3  3455554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.39  E-value=0.048  Score=43.68  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ++...+|+|++|+||||+...|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             ccceEEEECCCCccHHHHHHhhcc
Confidence            345678999999999999999853

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.10  E-value=0.098  Score=40.17  Aligned_cols=22  Identities=18%  Similarity=0.072  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHc
Q 027791           66 WVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ++|+|+..||||.+|+.++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            7899999999999999998654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.23  Score=35.94  Aligned_cols=25  Identities=16%  Similarity=0.021  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      +..-+++||+.|||||..-+.+.++
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHH
Confidence            4556789999999999888877766

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.80  E-value=0.19  Score=39.82  Aligned_cols=24  Identities=13%  Similarity=0.123  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      ...++|+||..+||||+.+.++--
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            356889999999999999998763

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.49  E-value=0.16  Score=41.29  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      |.|-|+|.|.+||||+-..|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            5789999999999999999943

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.41  E-value=0.14  Score=42.32  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHHcC
Q 027791           66 WVLIGDPGVKKHVYADNLSKLLE   88 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~~lg   88 (219)
                      -+|+|+.||||||+..+|+=-+|
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45889999999999999964343

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.85  E-value=0.29  Score=37.35  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCCCee
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEVPHI   92 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~~~I   92 (219)
                      +.+|..|+|+|||.++-.++.+++.+.+
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~L  114 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTPTL  114 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCEE
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCcee
Confidence            4568899999999999999998876654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.50  E-value=0.23  Score=40.50  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 027791           61 RRGVQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        61 ~~~~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++.++.++|++|+|||+++..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            36679999999999999999999865

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.71  E-value=0.27  Score=36.63  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 027791           66 WVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        66 Ivl~G~PGSGKST~a~~La~   85 (219)
                      .++.+|.|||||.++..++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            67889999999998777665

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.42  E-value=0.4  Score=37.57  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      ..|.|.|.=|+||||++-.||..+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHH
Confidence            467789999999999998888766

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.35  E-value=0.26  Score=38.73  Aligned_cols=22  Identities=9%  Similarity=0.125  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 027791           65 QWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .++|+||..+||||+.+.++--
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            5789999999999999987753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=84.77  E-value=0.32  Score=37.21  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKL   86 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~   86 (219)
                      .+|.++|-+.+||||++.+|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            67999999999999999998653

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.47  E-value=0.45  Score=34.70  Aligned_cols=26  Identities=15%  Similarity=-0.068  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHc
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .+..=+++||+.|||||-.-+...+|
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHHh
Confidence            45566789999999999988888776

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.15  E-value=0.5  Score=36.84  Aligned_cols=28  Identities=11%  Similarity=0.099  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .-++|+++|-..+||||+..+|....|.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4467999999999999999999776665

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.39  E-value=0.59  Score=35.25  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=21.6

Q ss_pred             eEEEEE-cCCCCChHHHHHHHHHHc---CCCee
Q 027791           64 VQWVLI-GDPGVKKHVYADNLSKLL---EVPHI   92 (219)
Q Consensus        64 ~~Ivl~-G~PGSGKST~a~~La~~l---g~~~I   92 (219)
                      ..|.|. +.-|+||||++..||..+   |.+++
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vl   35 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVL   35 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence            345566 777999999999998865   55543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.39  E-value=0.45  Score=38.17  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 027791           62 RGVQWVLIGDPGVKKHVYADNLS   84 (219)
Q Consensus        62 ~~~~Ivl~G~PGSGKST~a~~La   84 (219)
                      ..++|+|+|...|||||+...|.
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHh
Confidence            34578999999999999999986

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.23  E-value=0.51  Score=34.23  Aligned_cols=23  Identities=13%  Similarity=-0.184  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHc
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~l   87 (219)
                      .=+++||+.|||||-.-+...++
T Consensus         4 L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHHHHH
Confidence            44689999999999766666665

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.06  E-value=0.46  Score=35.93  Aligned_cols=21  Identities=33%  Similarity=0.370  Sum_probs=17.3

Q ss_pred             EEEcCCCCChHHHHHHHHHHc
Q 027791           67 VLIGDPGVKKHVYADNLSKLL   87 (219)
Q Consensus        67 vl~G~PGSGKST~a~~La~~l   87 (219)
                      +..|..|+||||++..||..+
T Consensus         6 v~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           6 VASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEESSSCSCHHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHHH
Confidence            344889999999999888765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.88  E-value=0.48  Score=35.87  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      ..+|.++|-..+||||+..+|..
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CeEEEEEEccCCcHHHHHHHHHh
Confidence            36899999999999999999963

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.43  E-value=0.48  Score=38.45  Aligned_cols=27  Identities=4%  Similarity=-0.149  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           63 GVQWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        63 ~~~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      -..|.++|..|+||||++.+|...-|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            346999999999999999999766654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.22  E-value=0.64  Score=36.81  Aligned_cols=29  Identities=24%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHc---CCCee
Q 027791           64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHI   92 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~~l---g~~~I   92 (219)
                      .+|.|.|.=|+||||++-.||..+   |..++
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVL   34 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM   34 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            457778999999999877776654   55543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=82.04  E-value=0.51  Score=38.03  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHcCC
Q 027791           65 QWVLIGDPGVKKHVYADNLSKLLEV   89 (219)
Q Consensus        65 ~Ivl~G~PGSGKST~a~~La~~lg~   89 (219)
                      .|.|+|..|+||||++..|.-.-|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            5889999999999999999765554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=81.05  E-value=0.51  Score=35.32  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 027791           64 VQWVLIGDPGVKKHVYADNLSK   85 (219)
Q Consensus        64 ~~Ivl~G~PGSGKST~a~~La~   85 (219)
                      .+|.++|-+.+||||+..+|..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            5789999999999999999953