Citrus Sinensis ID: 027807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MERASKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVSGINSCKPGAVASY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccEEEEEEEcccccccccccccccccEEEEEcccEEEEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccccEEEEEcEEEEEEccccccccccEEEEEEEEcHHHccccccccccccEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccccccccEEEEEEccccccccccccEEcc
Coil and Loop (DISEMBL)
MERASKLMKLSTLLCMVVLCKaiespqyavvheesDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQganlnnsriamtspivtslvpgagplhsYAYVVTLYlpdkfqsdpptplpeihlnpfewdsHCVAVRKFSGFAIDEVIVKEADNLsfslrrspwanstssdsgyaysvaqyspplqfigrVNEIWVDIdvsginsckpgavasy
Flexible Loop (DISEMBL)
merasklmklSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVsginsckpgavasy
Low Complexity Region (SEG)
MERASKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVSGINSCKPGAVASY
Disordered region (IsUnstruct)
*******MKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQ*****PLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRS*W********GYAYSVAQYSPPLQFIGRVNEIWVDIDVSGINSC********
Disordered Region (DISOPRED)
****SKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSL***********YVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVSGINSCK*******
Disordered Region (DISEMBL)
MERASKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRS*********SGYAYSVAQYSPPLQFIGRVNEIWVDIDVSGINSCKPGAVASY
Disordered Region (DISPRO)
*ERASKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVSGI*****G*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERASKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVSGINSCKPGAVASY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9Y5Z4	205	Heme-binding protein 2 OS	yes	no	0.720	0.765	0.317	9e-16
Q9WU63	205	Heme-binding protein 2 OS	yes	no	0.720	0.765	0.304	3e-14
Q6NU05	190	Heme-binding protein 1 OS	N/A	no	0.706	0.810	0.304	1e-11
Q6DJ66	190	Heme-binding protein 1 OS	yes	no	0.701	0.805	0.303	7e-11
Q9R257	190	Heme-binding protein 1 OS	no	no	0.582	0.668	0.278	2e-08
Q9NRV9	189	Heme-binding protein 1 OS	no	no	0.577	0.666	0.293	5e-08
Q5ZMB2	189	Heme-binding protein 1 OS	no	no	0.619	0.714	0.253	9e-08
Q5ISC6	189	Heme-binding protein 1 OS	no	no	0.577	0.666	0.270	3e-07
Q148C9	191	Heme-binding protein 1 OS	no	no	0.573	0.654	0.283	0.0001

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           +E+R Y  + W+S  V E + +  A   GF +L  YIQG N    +I MT+P+ + + PG
Sbjct: 38  YEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 96

Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
           +GP       ++LY+P + Q DPP PL E  +   +     V VR F GF+  +   ++ 
Sbjct: 97  SGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQL 155

Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
             L+  LR     +    D    Y+ A Y+ P++ + R NE+W+
Sbjct: 156 LTLASILRE----DGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.
Homo sapiens (taxid: 9606)

>sp|Q9WU63|HEBP2_MOUSE Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 7/164 (4%)

Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           +E+R Y  + W+S  V E L +  A   GF +L  YIQG N    +I +T+P+ + + PG
Sbjct: 38  YEIRHYGPAKWVSTCV-ESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPG 96

Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
           + P       ++LY+P + Q DPP P  E  +   +     V VR F GF+  +   ++ 
Sbjct: 97  SSPFSESTITISLYIPSEQQPDPPRPS-ESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQL 155

Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
             L+  LR      +        +  A YS P Q + R NE+W+
Sbjct: 156 LTLANILREEGKVFNEK-----VFYTAGYSSPFQLLDRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin (By similarity). May have low affinity for heme.

Mus musculus (taxid: 10090)

>sp|Q6NU05|HEBP1_XENLA Heme-binding protein 1 OS=Xenopus laevis GN=hebp1 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           FE R Y    ++S  V  +  F +A+  G  RL +Y+ G+N  ++ + MTSP++ +  P 
Sbjct: 31  FEEREYEGGKFISTEVSGK-PFDEASKEGVLRLLKYVGGSNNKSAGMGMTSPVIINSYPS 89

Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
                     V L +P ++Q+DPP P     +   + +S  +   +F G+A      KEA
Sbjct: 90  ENDTLQPNVKVLLRIPSQYQADPPVPTDNT-IQIEDRESVTLYSTQFGGYA------KEA 142

Query: 157 DNLSFSLR-RSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIW 199
           D +S + + RS      S  S Y Y    Y PP++  GR NE+W
Sbjct: 143 DYVSHAAKLRSCLGPDISYHSDY-YMCCGYDPPMKPYGRRNEVW 185

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus laevis (taxid: 8355)

>sp|Q6DJ66|HEBP1_XENTR Heme-binding protein 1 OS=Xenopus tropicalis GN=hebp1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           FE R Y    ++S  V  +  F +A+     RL +Y+ G+N   + + MTSP+V +  P 
Sbjct: 31  FEEREYEGGKFVSTEVSGK-PFDEASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITSYPA 89

Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPE-IHLNPFEWDSHCVAVRKFSGFAIDEVIVKE 155
                     V L +P ++Q+DPP P  + IH+   + +S      +F G+A      KE
Sbjct: 90  ENETLQPNVKVLLRIPSQYQADPPVPTDDTIHIE--DRESVTFYSTQFGGYA------KE 141

Query: 156 ADNLSFSLR-RSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIW 199
           AD +S + + RS      S  + + Y    Y PP++  GR NE+W
Sbjct: 142 ADYVSHAAKLRSCLGPDISYHTDH-YMCCGYDPPMKPYGRRNEVW 185

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus tropicalis (taxid: 8364)

>sp|Q9R257|HEBP1_MOUSE Heme-binding protein 1 OS=Mus musculus GN=Hebp1 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 68  RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
           ++ +Y+ G N     + MT P+  +L P           V   +P++FQ  PP P  E  
Sbjct: 61  KIMKYVGGTNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-S 119

Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
           +   E +   V   +F G+A +   V  A  L  +L  +P     ++  G  Y  A Y P
Sbjct: 120 VKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-----ATYQGDVYYCAGYDP 174

Query: 188 PLQFIGRVNEIWV 200
           P++  GR NE+W+
Sbjct: 175 PMKPYGRRNEVWL 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Mus musculus (taxid: 10090)

>sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens GN=HEBP1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 68  RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
           ++ +Y  G N     + MT PI  ++ P           V   +P++FQSDPP P  +  
Sbjct: 61  KVAKYAGGTNDKGIGMGMTVPISFAVFPNEDGSLQKKLKVWFRIPNQFQSDPPAP-SDKS 119

Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
           +   E +   V   +F G+A      KEAD ++ + R       T++  G  Y    Y P
Sbjct: 120 VKIEEREGITVYSMQFGGYA------KEADYVAQATRLRAALEGTATYRGDIYFCTGYDP 173

Query: 188 PLQFIGRVNEIWV 200
           P++  GR NEIW+
Sbjct: 174 PMKPYGRRNEIWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Homo sapiens (taxid: 9606)

>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 58  FAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQS 117
           F +A+     +L +Y+ G+N   + + MT+P+  +  P           V L +P++FQ+
Sbjct: 51  FDEASKEAALKLLKYVGGSNDKGAGMGMTAPVSITAFPAEDGSLQQKVKVYLRIPNQFQA 110

Query: 118 DPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSG 177
            PP P  E  +   E     +   +F G+A      KE D ++++ +      S ++   
Sbjct: 111 SPPCPSDE-SIKIEERQGMTIYSTQFGGYA------KEVDYVNYAAKLKTALGSEAAYRK 163

Query: 178 YAYSVAQYSPPLQFIGRVNEIW 199
             Y    Y PP++  GR NE+W
Sbjct: 164 DFYFCNGYDPPMKPYGRRNEVW 185

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Gallus gallus (taxid: 9031)

>sp|Q5ISC6|HEBP1_PIG Heme-binding protein 1 OS=Sus scrofa GN=HEBP1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 68  RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
           ++ +Y+ G+N     + MT PI  ++ P  G        V   +P++FQS+PP P  +  
Sbjct: 61  KVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQKKLKVWFRIPNEFQSNPPVPSDD-S 119

Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
           +   E +S  V   +F G+A      KEAD ++ + +        ++     Y    Y P
Sbjct: 120 IKIEERESITVYSLQFGGYA------KEADYVARAAQLRTALEGIATCRSDVYFCTGYDP 173

Query: 188 PLQFIGRVNEIWV 200
           P++  GR NE+W+
Sbjct: 174 PMKPYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Sus scrofa (taxid: 9823)

>sp|Q148C9|HEBP1_BOVIN Heme-binding protein 1 OS=Bos taurus GN=HEBP1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 68  RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPE-I 126
           ++ +Y+ G+N     + MT PI  ++ P           V   +P+KFQSDPP P  + I
Sbjct: 61  KVMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDLQKKLKVWFRIPNKFQSDPPAPSDDSI 120

Query: 127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYS 186
            +   E     V   +F G+A       +A  L  +L       ST+      Y    Y 
Sbjct: 121 KIEDRE--GITVYSTQFGGYAKAADYAAQAAQLRSAL------ESTAKYQTDFYFCTGYD 172

Query: 187 PPLQFIGRVNEIWV 200
           PP++  GR NE+W+
Sbjct: 173 PPMKPYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
224135859	220	predicted protein [Populus trichocarpa]	0.944	0.936	0.661	6e-76
224119478	194	predicted protein [Populus trichocarpa]	0.889	1.0	0.687	3e-73
255540593	230	Heme-binding protein, putative [Ricinus	0.995	0.943	0.605	6e-72
225456963	240	PREDICTED: heme-binding protein 2-like [	0.995	0.904	0.637	4e-70
297733745	248	unnamed protein product [Vitis vinifera]	0.940	0.826	0.660	6e-70
449469553	216	PREDICTED: heme-binding protein 2-like [	0.949	0.958	0.636	3e-66
449487847	245	PREDICTED: heme-binding protein 2-like [	0.949	0.844	0.636	3e-66
242055823	219	hypothetical protein SORBIDRAFT_03g00059	0.866	0.863	0.615	2e-64
357128941	214	PREDICTED: heme-binding protein 2-like [	0.880	0.897	0.608	2e-64
146454570	170	SOUL-like protein [Sonneratia caseolaris	0.766	0.982	0.720	4e-64

>gi|224135859|ref|XP_002322178.1| predicted protein [Populus trichocarpa] gi|222869174|gb|EEF06305.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 137/207 (66%), Positives = 160/207 (77%), Gaps = 1/207 (0%)

Query: 12  TLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQ 71
            +L +V LCKAIESPQYAVVH ESDFEVRLY  STWMSA V  ELSF KATL GFHRLFQ
Sbjct: 15  VVLDLVCLCKAIESPQYAVVHAESDFEVRLYVNSTWMSAPV-NELSFEKATLFGFHRLFQ 73

Query: 72  YIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPF 131
           YIQGANLN+SRIAMT+P+VTS+VPGAGP  S AY+V  YLP KFQ+DPP PL E+HL P+
Sbjct: 74  YIQGANLNSSRIAMTAPVVTSIVPGAGPFRSSAYIVRFYLPVKFQADPPVPLDELHLKPY 133

Query: 132 EWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF 191
            W+S CVAVRKFSG+A DE + +EA  L+ SL  SPW N TS+++  +YS+AQY  P QF
Sbjct: 134 TWNSRCVAVRKFSGYAKDENVAREAKRLAVSLSMSPWVNVTSTENNCSYSIAQYDSPFQF 193

Query: 192 IGRVNEIWVDIDVSGINSCKPGAVASY 218
           I R NE+W DI   G N C+ G +ASY
Sbjct: 194 IHRTNEVWADIKAPGANGCQSGVIASY 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119478|ref|XP_002318082.1| predicted protein [Populus trichocarpa] gi|222858755|gb|EEE96302.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/195 (68%), Positives = 152/195 (77%), Gaps = 1/195 (0%)

Query: 24  ESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRI 83
           ESPQYAVVH E DFEVRLY  STWMSA V E LSF KATL GFHRLFQYIQGANLN SRI
Sbjct: 1   ESPQYAVVHAEPDFEVRLYVNSTWMSAPVNE-LSFEKATLFGFHRLFQYIQGANLNYSRI 59

Query: 84  AMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKF 143
           A+T P+VTS+VPGAGP  S AYVV  YLP K Q+DPP PL E+HL P+ W+SHCVAVRKF
Sbjct: 60  AVTVPVVTSIVPGAGPFRSSAYVVRFYLPVKLQADPPVPLDELHLKPYAWNSHCVAVRKF 119

Query: 144 SGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDID 203
           SG+A DE I +EA  L+ SL RSPWAN +S++S Y+YS+AQY  P QFIGR NE+W DI 
Sbjct: 120 SGYAKDENIAEEAKRLADSLSRSPWANLSSTESNYSYSIAQYDSPFQFIGRTNEVWADIK 179

Query: 204 VSGINSCKPGAVASY 218
           VSG + C    +ASY
Sbjct: 180 VSGADGCNSSGIASY 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540593|ref|XP_002511361.1| Heme-binding protein, putative [Ricinus communis] gi|223550476|gb|EEF51963.1| Heme-binding protein, putative [Ricinus communis]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 132/218 (60%), Positives = 163/218 (74%), Gaps = 1/218 (0%)

Query: 1   MERASKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAK 60
           M++   L+ + TLL  V   + IE PQY V+H ESDFEVRLY +S+WM+A V  E+SF K
Sbjct: 14  MKKDRFLILVITLLFFVAESREIEKPQYQVIHAESDFEVRLYYESSWMAAPV-TEISFEK 72

Query: 61  ATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPP 120
           ATL GFHRLFQ+IQGANLN +RI MT+P+VTS+VPGAGP  S AY V  YLP KFQ+DPP
Sbjct: 73  ATLDGFHRLFQFIQGANLNWTRIPMTAPVVTSIVPGAGPFQSSAYYVLFYLPLKFQADPP 132

Query: 121 TPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAY 180
            PLPE+HL P+   S C+AVR FSGFA D+ IVKEA  L+ SL RSPWAN TS +S  AY
Sbjct: 133 VPLPELHLKPYVQGSRCIAVRTFSGFAKDDNIVKEAKKLAASLSRSPWANRTSLESKSAY 192

Query: 181 SVAQYSPPLQFIGRVNEIWVDIDVSGINSCKPGAVASY 218
           S+AQY  P  FIGRVNE+W D++ +G+NSC+   +A+Y
Sbjct: 193 SIAQYDAPFHFIGRVNEVWADVNANGVNSCEYSNIATY 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456963|ref|XP_002281829.1| PREDICTED: heme-binding protein 2-like [Vitis vinifera]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 173/218 (79%), Gaps = 1/218 (0%)

Query: 1   MERASKLMKLSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAK 60
           ME+    + L ++LC + LCK IESP++AV+H ESDFEVRLY +STWM+A VR+ +SF K
Sbjct: 24  MEKPWLSLMLISILCCLALCKGIESPEFAVIHAESDFEVRLYPESTWMTASVRD-ISFEK 82

Query: 61  ATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPP 120
           +T  GFHRLFQYIQGANLN SRIAMT+P++TS+VPGAGPLHS AY V  YLP KFQ+ PP
Sbjct: 83  STWNGFHRLFQYIQGANLNFSRIAMTAPVLTSIVPGAGPLHSSAYFVRFYLPVKFQATPP 142

Query: 121 TPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAY 180
            PLPE+HL P +W  HC+AVRKFSG+A D+ IVKEA+ L+ SL RSPWAN T+S+S YAY
Sbjct: 143 LPLPELHLKPDKWAIHCIAVRKFSGYARDDNIVKEAEKLAISLSRSPWANFTTSESNYAY 202

Query: 181 SVAQYSPPLQFIGRVNEIWVDIDVSGINSCKPGAVASY 218
           S+AQYS P Q  GRVNEIWVD+  SG+  C+  +V++Y
Sbjct: 203 SIAQYSSPFQIFGRVNEIWVDVKNSGLEGCESSSVSTY 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733745|emb|CBI14992.3| unnamed protein product [Vitis vinifera]

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 136/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%)

Query: 13  LLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQY 72
           +LC + LCK IESP++AV+H ESDFEVRLY +STWM+A VR+ +SF K+T  GFHRLFQY
Sbjct: 44  ILCCLALCKGIESPEFAVIHAESDFEVRLYPESTWMTASVRD-ISFEKSTWNGFHRLFQY 102

Query: 73  IQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFE 132
           IQGANLN SRIAMT+P++TS+VPGAGPLHS AY V  YLP KFQ+ PP PLPE+HL P +
Sbjct: 103 IQGANLNFSRIAMTAPVLTSIVPGAGPLHSSAYFVRFYLPVKFQATPPLPLPELHLKPDK 162

Query: 133 WDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFI 192
           W  HC+AVRKFSG+A D+ IVKEA+ L+ SL RSPWAN T+S+S YAYS+AQYS P Q  
Sbjct: 163 WAIHCIAVRKFSGYARDDNIVKEAEKLAISLSRSPWANFTTSESNYAYSIAQYSSPFQIF 222

Query: 193 GRVNEIWVDIDVSGINSCKPGAVASY 218
           GRVNEIWVD+  SG+  C+  +V++Y
Sbjct: 223 GRVNEIWVDVKNSGLEGCESSSVSTY 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469553|ref|XP_004152484.1| PREDICTED: heme-binding protein 2-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 133/209 (63%), Positives = 165/209 (78%), Gaps = 2/209 (0%)

Query: 10  LSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRL 69
           L  L C + LC AIESPQYAVVH ESDFE+R Y +STW+SA V++  SF KAT  GFHRL
Sbjct: 10  LLNLSCFLSLCIAIESPQYAVVHSESDFEIRFYRKSTWISAPVQDP-SFEKATKNGFHRL 68

Query: 70  FQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLN 129
           FQYIQGANLN SRIAMT+P++TS+VPGAGPLHS +Y+V  YLP KFQ+ PP PLPE+ L 
Sbjct: 69  FQYIQGANLNWSRIAMTAPVLTSIVPGAGPLHSSSYLVQFYLPLKFQASPPLPLPELKLK 128

Query: 130 PFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPL 189
           P +W++HCVAVRKFSGFA DE ++KEA+ L+ SL R P ANST S+ GYAY++AQY  P 
Sbjct: 129 PCDWEAHCVAVRKFSGFARDEKVIKEAEKLATSLSRFPLANST-SERGYAYAIAQYDSPF 187

Query: 190 QFIGRVNEIWVDIDVSGINSCKPGAVASY 218
           + IGRVNE+WVD+D + +  CK  A+A++
Sbjct: 188 RLIGRVNEVWVDVDAADLEGCKSSAIAAF 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487847|ref|XP_004157830.1| PREDICTED: heme-binding protein 2-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 133/209 (63%), Positives = 165/209 (78%), Gaps = 2/209 (0%)

Query: 10  LSTLLCMVVLCKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRL 69
           L  L C + LC AIESPQYAVVH ESDFE+R Y +STW+SA V++  SF KAT  GFHRL
Sbjct: 39  LLNLSCFLSLCIAIESPQYAVVHSESDFEIRFYRKSTWISAPVQDP-SFEKATKNGFHRL 97

Query: 70  FQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLN 129
           FQYIQGANLN SRIAMT+P++TS+VPGAGPLHS +Y+V  YLP KFQ+ PP PLPE+ L 
Sbjct: 98  FQYIQGANLNWSRIAMTAPVLTSIVPGAGPLHSSSYLVQFYLPLKFQASPPLPLPELKLK 157

Query: 130 PFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPL 189
           P +W++HCVAVRKFSGFA DE ++KEA+ L+ SL R P ANST S+ GYAY++AQY  P 
Sbjct: 158 PCDWEAHCVAVRKFSGFARDEKVIKEAEKLATSLSRFPLANST-SERGYAYAIAQYDSPF 216

Query: 190 QFIGRVNEIWVDIDVSGINSCKPGAVASY 218
           + IGRVNE+WVD+D + +  CK  A+A++
Sbjct: 217 RLIGRVNEVWVDVDAADLEGCKSSAIAAF 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055823|ref|XP_002457057.1| hypothetical protein SORBIDRAFT_03g000590 [Sorghum bicolor] gi|241929032|gb|EES02177.1| hypothetical protein SORBIDRAFT_03g000590 [Sorghum bicolor]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 145/195 (74%), Gaps = 6/195 (3%)

Query: 24  ESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRI 83
           E+PQY  VH ESDFEVRLY  + WMSA   +  SF  AT LGFHRLFQY+ GANLN+SRI
Sbjct: 31  ETPQYTTVHAESDFEVRLYRDTVWMSAPTPDIPSFHVATKLGFHRLFQYLMGANLNSSRI 90

Query: 84  AMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKF 143
            MT+P++TS+VPGAGPLHS AY V  YLP KFQ+ PP PLPE++L+P  W SHC+AVR F
Sbjct: 91  RMTTPVLTSVVPGAGPLHSSAYFVRFYLPTKFQASPPVPLPELNLHPDTWPSHCIAVRSF 150

Query: 144 SGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDID 203
           SG+A D+ +V+EA+ L+ SL RSPWANST+  S  AYSVAQYS P + IGRVNE+W D+D
Sbjct: 151 SGYARDKNVVEEAEKLAMSLSRSPWANSTNYPSNSAYSVAQYSSPFRIIGRVNEVWFDVD 210

Query: 204 VSGINSCKPGAVASY 218
                 CK   V +Y
Sbjct: 211 ------CKSTGVETY 219

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357128941|ref|XP_003566128.1| PREDICTED: heme-binding protein 2-like [Brachypodium distachyon]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/199 (60%), Positives = 147/199 (73%), Gaps = 7/199 (3%)

Query: 20  CKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLN 79
            +A E+PQY++VH+ESDFEVRLY  + WMSA   +E+SF  AT LGFHRLFQY+ GANLN
Sbjct: 23  ARAAETPQYSMVHKESDFEVRLYRDTVWMSA-PSDEISFHVATKLGFHRLFQYLMGANLN 81

Query: 80  NSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVA 139
           +SRI MT+PI+TS+VPGAGPLHS AY V LYLP  FQ+ PP PLPE++L P  W SHC+A
Sbjct: 82  SSRIRMTNPILTSIVPGAGPLHSSAYFVRLYLPANFQASPPVPLPELNLRPDRWPSHCIA 141

Query: 140 VRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIW 199
            R F G+A D  +V+EA  L+ SL RSPWANST+  S  AYSVAQYS P + IGRVNE+W
Sbjct: 142 ARSFPGYARDNNVVEEAKKLAMSLSRSPWANSTNYPSENAYSVAQYSSPFRIIGRVNEVW 201

Query: 200 VDIDVSGINSCKPGAVASY 218
            D+D      CK   V +Y
Sbjct: 202 FDVD------CKSAGVETY 214

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454570|gb|ABQ41951.1| SOUL-like protein [Sonneratia caseolaris] gi|146454574|gb|ABQ41953.1| SOUL-like protein [Sonneratia apetala]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/168 (72%), Positives = 138/168 (82%), Gaps = 1/168 (0%)

Query: 22  AIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNS 81
           AIESPQY VVH ESDFEVRLY +STWMSA VR+ LSF KATL GFHRLFQ+I+GANLN S
Sbjct: 4   AIESPQYTVVHAESDFEVRLYGKSTWMSAPVRD-LSFQKATLNGFHRLFQFIEGANLNYS 62

Query: 82  RIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVR 141
           RI MT P+VTS+VP AGPLHS AY V  YLP KFQ  PPTPLPE+HL  + W SHCVA+R
Sbjct: 63  RIPMTFPVVTSIVPEAGPLHSSAYSVLFYLPAKFQETPPTPLPELHLKAYIWASHCVAIR 122

Query: 142 KFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPL 189
           KFSGFA D+ IV+EA+ L+FSL +S WAN+TS+ SGYAYS+AQYS P 
Sbjct: 123 KFSGFAKDDNIVREAEKLAFSLSKSTWANATSAKSGYAYSIAQYSSPF 170

Source: Sonneratia caseolaris

Species: Sonneratia caseolaris

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	0.834	0.784	0.396	2.2e-34
TAIR|locus:2032055	219	AT1G78460 [Arabidopsis thalian	0.811	0.808	0.356	4.4e-25
TAIR|locus:2032065	225	AT1G78450 "AT1G78450" [Arabido	0.899	0.871	0.319	2.6e-24
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.775	0.889	0.348	5.5e-22
UNIPROTKB|F1S6A9	205	HEBP2 "Uncharacterized protein	0.779	0.829	0.318	4.6e-18
UNIPROTKB|E1BFP1	205	HEBP2 "Uncharacterized protein	0.779	0.829	0.300	1.6e-17
UNIPROTKB|Q9Y5Z4	205	HEBP2 "Heme-binding protein 2"	0.788	0.839	0.291	1.6e-17
RGD|1311553	203	Hebp2 "heme binding protein 2"	0.793	0.852	0.293	2.3e-16
MGI|MGI:1860084	205	Hebp2 "heme binding protein 2"	0.793	0.843	0.293	4.7e-16
UNIPROTKB|E2QYU6	200	HEBP2 "Uncharacterized protein	0.788	0.86	0.302	1.6e-15

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 77/194 (39%), Positives = 116/194 (59%)

Query:    20 CKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLN 79
             C  IE P Y +VH  + +E+R Y+ + W+S     ++S   AT   F +LF YIQG N  
Sbjct:    42 CNRIECPSYELVHSGNGYEIRRYNNTVWVSTEPIPDISLVDATRTAFFQLFAYIQGKNEY 101

Query:    80 NSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVA 139
             + +I MT+P+++ + P  GP    ++ V+ Y+P K Q DP  P   +H+   +W+S  VA
Sbjct:   102 HQKIEMTAPVISQVSPSDGPFCESSFTVSFYVPKKNQPDP-APSENLHIQ--KWNSRYVA 158

Query:   140 VRKFSGFAIDEVIVKEADNLSFSLRRSPWANS---TSSDSGY----AYSVAQYSPPLQFI 192
             VR+FSGF  D+ I ++A  L  SL+ + WAN+   +  D G     AY+VAQY+ P +F 
Sbjct:   159 VRQFSGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYTVAQYNSPFEFS 218

Query:   193 GRVNEIWV--DIDV 204
             GRVNEIW+  ++DV
Sbjct:   219 GRVNEIWLPFELDV 232

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
 Identities = 67/188 (35%), Positives = 94/188 (50%)

Query:    20 CKAIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLN 79
             C   E P Y +V     FE+R+Y  + W+S      LS  +AT  GF RL +YI+G N +
Sbjct:    40 CDHYECPTYKLVEAGYGFEIRMYDAALWISTSPIPSLSMTQATKTGFRRLNRYIEGDNKS 99

Query:    80 NSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVA 139
             N ++ MT+P++    PG        Y V+LYLP K Q +PP    ++H+   +     VA
Sbjct:   100 NVKMNMTAPVIAQATPGRS-----VYTVSLYLPKKNQQNPPQA-DDLHVRSTK--PTYVA 151

Query:   140 VRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGY--AYSVAQYSPPLQFIGRV-N 196
             VR+  G+  + V   EA  L  SLR S W        G   AY +A Y+PP     RV N
Sbjct:   152 VRQIGGYVSNNVAKDEAAALMESLRDSNWILPIEKSKGKLPAYFLAVYNPPSHTTARVIN 211

Query:   197 EIWVDIDV 204
             EI V  ++
Sbjct:   212 EIMVPFNM 219

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032065 AT1G78450 "AT1G78450" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 71/222 (31%), Positives = 117/222 (52%)

Query:     1 MERASKLMKLSTLLCMV-----VL------CKAIESPQYAVVHEESDFEVRLYSQSTWMS 49
             ME A  + KLS LL ++     ++      C   E P Y VVH  + +E+  Y+ + W+S
Sbjct:     1 MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWIS 60

Query:    50 ARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTL 109
                 +++S  +A+  G+++L  Y+ G N  + RI +  P +T +           ++V+ 
Sbjct:    61 TEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLS-----TFIVSF 115

Query:   110 YLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWA 169
             ++P  FQ DPP P   +H+    WDS  VAV++ SG+  D  I K+   L  SL+ + WA
Sbjct:   116 FVPKAFQPDPP-PGNNLHVQ--RWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWA 172

Query:   170 NST--SSDSG-----YAYSVAQYSPPLQFIGRVNEIWVDIDV 204
              +   S ++G     +AY+VAQ+S P Q+  RVNEIW   ++
Sbjct:   173 KAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEM 214

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 63/181 (34%), Positives = 96/181 (53%)

Query:    23 IESPQYAVVHEESD-FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNS 81
             +++P+Y     + D +EVR Y  + W+S  V   +   +A   GF RLF+YIQG+N   S
Sbjct:    14 LQNPKYTAQESKGDDYEVRTYQATNWVSTVVTG-MEQDQAMSTGFRRLFKYIQGSNEKKS 72

Query:    82 RIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPL-PEIHLNPFEWDSHCVA- 139
             ++ MT+P+   + PGAGP     + V+ Y+P++ Q+DPP P  P++ +   E      A 
Sbjct:    73 KVEMTTPVSCLIDPGAGPACESTFTVSFYIPEEHQADPPKPTDPDVFI---ESRKELTAF 129

Query:   140 VRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIW 199
             VR F GFA  E   +E   L  SL+R         ++ Y Y  A Y  P +  GR NE+W
Sbjct:   130 VRTFGGFANSESCCEEILKLIESLKRD---GMKFKEAPY-YR-AGYDSPFKLTGRRNEVW 184

Query:   200 V 200
             +
Sbjct:   185 L 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S6A9 HEBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 59/185 (31%), Positives = 89/185 (48%)

Query:    22 AIESPQYAVVHEES----DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGAN 77
             A+E+P +    +       +E+R Y  + W+S  V E   +  A   GF RL  YIQG N
Sbjct:    19 AVETPGWEAPEDTGPQPGSYEIRHYGPAKWVSTSV-ESTDWDSAIQTGFTRLNSYIQGKN 77

Query:    78 LNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWD--S 135
                 +I MT+P+ + + PG+GP       ++LY+P + QSDPP P      N F  D   
Sbjct:    78 EKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQSDPPRPTES---NVFIEDRAE 134

Query:   136 HCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRV 195
               V VR F GF+  +   ++   L+  LR          +  Y Y+ A YS P + + R 
Sbjct:   135 MTVFVRSFDGFSSAQKNQEQLLTLASVLREE---GKVFDEKVY-YT-AGYSSPFELLDRN 189

Query:   196 NEIWV 200
             NE+W+
Sbjct:   190 NEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BFP1 HEBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 55/183 (30%), Positives = 91/183 (49%)

Query:    23 IESPQYAVVHEES----DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANL 78
             +E+P + V  +       +EVR Y  + W+S  V E + +  A   GF RL  Y+QG N 
Sbjct:    20 VETPGWEVPEDAGPQPGSYEVRHYGPAKWVSTAV-ESMDWDSAMQTGFTRLKSYLQGKNE 78

Query:    79 NNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLP-EIHLNPFEWDSHC 137
                +I MT+P+ + + PG+GP       ++LY+P + QSDPP P   ++ +   +     
Sbjct:    79 KEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQSDPPRPAESDVFIE--DRAEMT 136

Query:   138 VAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNE 197
             V VR F GF+  +   ++   L+  LR          +  Y Y+ A Y+ P + + R NE
Sbjct:   137 VFVRSFDGFSSAQKNQEQLLTLASILREE---GKVFDEKVY-YT-AGYNSPFKLLDRNNE 191

Query:   198 IWV 200
             +W+
Sbjct:   192 VWL 194

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9Y5Z4 HEBP2 "Heme-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 54/185 (29%), Positives = 93/185 (50%)

Query:    21 KAIESPQYAVVHEES----DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGA 76
             +A+E+P +    +       +E+R Y  + W+S  V E + +  A   GF +L  YIQG 
Sbjct:    18 QAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQGK 76

Query:    77 NLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLP-EIHLNPFEWDS 135
             N    +I MT+P+ + + PG+GP       ++LY+P + Q DPP PL  ++ +   +   
Sbjct:    77 NEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIE--DRAE 134

Query:   136 HCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRV 195
               V VR F GF+  +   ++   L+  LR          +  Y Y+ A Y+ P++ + R 
Sbjct:   135 MTVFVRSFDGFSSAQKNQEQLLTLASILRED---GKVFDEKVY-YT-AGYNSPVKLLNRN 189

Query:   196 NEIWV 200
             NE+W+
Sbjct:   190 NEVWL 194

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1311553 Hebp2 "heme binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 54/184 (29%), Positives = 91/184 (49%)

Query:    21 KAIESPQYAVVH----EESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGA 76
             +A+E P +        +   +E+R Y  + W+S  V E L +  A   GF +L  YIQG 
Sbjct:    16 QAMEMPSWKAPENIDPQPGSYEIRHYGPAKWVSTCV-ESLDWDSAIQTGFTKLNGYIQGK 74

Query:    77 NLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSH 136
             N    +I +T+P+++ + PG+GP       ++LY+P + Q DPP P  E  +   +    
Sbjct:    75 NEKEMKIKLTAPVMSFVEPGSGPFSESTITISLYIPSEQQHDPPRP-SESDVFIEDRGEM 133

Query:   137 CVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVN 196
              V VR F GF+  +   ++   L+  LR         ++  + Y+ A YS P + + R N
Sbjct:   134 TVFVRSFDGFSSGQKNQEQLLTLANILREE---GKVFNEKVF-YT-AGYSSPFRLLDRNN 188

Query:   197 EIWV 200
             E+W+
Sbjct:   189 EVWL 192

GO:0005737 "cytoplasm" evidence=IEA;ISO

MGI|MGI:1860084 Hebp2 "heme binding protein 2" [Mus musculus (taxid:10090)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 54/184 (29%), Positives = 89/184 (48%)

Query:    21 KAIESPQYAVVHE----ESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGA 76
             +A+E P +    +       +E+R Y  + W+S  V E L +  A   GF +L  YIQG 
Sbjct:    18 QALEMPSWKAPEDIDPQPGSYEIRHYGPAKWVSTCV-ESLDWDSAIQTGFTKLNGYIQGK 76

Query:    77 NLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSH 136
             N    +I +T+P+ + + PG+ P       ++LY+P + Q DPP P  E  +   +    
Sbjct:    77 NEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRP-SESDVFIEDRAEM 135

Query:   137 CVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVN 196
              V VR F GF+  +   ++   L+  LR         ++  + Y+ A YS P Q + R N
Sbjct:   136 TVFVRSFDGFSSGQKNQEQLLTLANILREE---GKVFNEKVF-YT-AGYSSPFQLLDRNN 190

Query:   197 EIWV 200
             E+W+
Sbjct:   191 EVWL 194

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2QYU6 HEBP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 56/185 (30%), Positives = 91/185 (49%)

Query:    21 KAIESPQYAVVHEES----DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGA 76
             +A+E+P +    +       +E+R Y  + W+S  V E L +  A   G+ +L  Y++G 
Sbjct:    13 RAVETPGWTAPEDAGPQPGSYEIRRYGPAKWVSTSV-ESLDWDAAIQTGYSKLDSYMRGK 71

Query:    77 NLNNSRIAMTSPIVTSLV-PGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDS 135
             N    +I MT+P VTSLV PG+GP       ++LY+P + Q DPP P  E  +   +   
Sbjct:    72 NEREMKIKMTAP-VTSLVEPGSGPFSESIITISLYIPSEQQPDPPRP-SESGVFIEDRAE 129

Query:   136 HCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRV 195
               V VR F GF+  +   ++   L+  LR         ++  Y Y+ A Y+ P   +   
Sbjct:   130 MTVFVRAFDGFSSAQKNQEQLLTLASILREE---GKVFNEKVY-YT-AGYNSPFNLLDGN 184

Query:   196 NEIWV 200
             NE+W+
Sbjct:   185 NEVWL 189

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	4e-48

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  155 bits (394), Expect = 4e-48
 Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 13/183 (7%)

Query: 22  AIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNS 81
           A+E+P Y V+  E D+E+R Y    W    V +  S  +A+  GF RL  YI G N +  
Sbjct: 1   AVETPPYTVLEREGDYEIRRYEPMVWAETEV-DAGSRDEASGEGFRRLAGYIFGKNRSGE 59

Query: 82  RIAMTSPIVTSLVPG-AGPLHSYAYVVTLYLPDKFQSD-PPTPL-PEIHLNPFEWDSHCV 138
           +IAMT+P++   +P  A    S A+ V+  +P  +Q++  P PL P++ +   E  +  V
Sbjct: 60  KIAMTAPVLQQAIPMTADEEGSGAWTVSFVMPSGYQAETLPAPLDPDVRIR--EVPARTV 117

Query: 139 AVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPL-QFIGRVNE 197
           AV +FSG A +E + ++A  L   L                  +A Y+PP      R NE
Sbjct: 118 AVIRFSGRASEEDVAEKAAELRAWLEADGLKPR------GEPFLAGYNPPWTPPFLRRNE 171

Query: 198 IWV 200
           +WV
Sbjct: 172 VWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	97.63
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	97.45
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	96.39
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	94.04
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	92.93
PRK10016	156	DNA gyrase inhibitor; Provisional	92.85
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	89.46

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=1.6e-56  Score=367.35  Aligned_cols=174  Identities=37%  Similarity=0.672  Sum_probs=142.3

Q ss_pred             CCCCCCeEEEeecCCeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEEecCCCCCc
Q 027807           22 AIESPQYAVVHEESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLH  101 (218)
Q Consensus        22 ~~e~P~Y~Vl~~~~~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~~~~~~  101 (218)
                      +.|||+|+||++.++||||+|++++||||++. +++++.|...||++|++||+|+|+++++|+||+||++++.+++...|
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~-~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~   79 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVS-GCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESC   79 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEEEE-CS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTC
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEEec-CCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCccc
Confidence            47999999999999999999999999999999 89999999999999999999999999999999999999987766678


Q ss_pred             cceEEEEEEecCCCC-CCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcE
Q 027807          102 SYAYVVTLYLPDKFQ-SDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAY  180 (218)
Q Consensus       102 ~~~~t~sf~lP~~~~-~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~  180 (218)
                      ++.++|||+||++|| ++||+|+ |++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+.      ..+.+
T Consensus        80 ~~~~t~~f~lP~~~~~~~~P~P~-d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~------~~~~~  152 (176)
T PF04832_consen   80 EKEYTMSFFLPSEYQAENPPKPT-DPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLK------DKGYY  152 (176)
T ss_dssp             ECEEEEEEE--HHHC-TS---BS-STTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHH------CCCEE
T ss_pred             CCcEEEEEEcCcccccccCCCCC-CCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCC------cCCCe
Confidence            899999999999999 7899999 899999999999999999999999999999999999999999976      47899


Q ss_pred             EEEEeCCCCCC-CCCceeEEEEee
Q 027807          181 SVAQYSPPLQF-IGRVNEIWVDID  203 (218)
Q Consensus       181 ~~A~Yd~P~~~-~~R~NEV~i~v~  203 (218)
                      ++|+||+||++ ++|||||||+|+
T Consensus       153 ~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  153 YVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             EEEESSSS-SSSSSSCEEEEEE--
T ss_pred             EEEEcCCCCCCccCcceEEEEecC
Confidence            99999999776 999999999985

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=97.63  E-value=0.017  Score=45.78  Aligned_cols=149  Identities=15%  Similarity=0.134  Sum_probs=95.6

Q ss_pred             CeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEEe--cCCCCCccceEEEEEEecC
Q 027807           36 DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLV--PGAGPLHSYAYVVTLYLPD  113 (218)
Q Consensus        36 ~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~--~~~~~~~~~~~t~sf~lP~  113 (218)
                      +++|+..++...++.... + ++.+...++|.+|+.++..+|-.   .  + +.+.-..  |...+..+-.+-+++-+|.
T Consensus         2 ~v~i~~~~~~~va~ir~~-g-~~~~~~~~~~~~L~~~~~~~~l~---~--~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~   73 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLV-G-PWEQTVKQGFEQLMMWVDSHNIV---P--K-EWVAVYYDNPDEVPAEKLRCDTVVTVPD   73 (156)
T ss_pred             ceEEEEccCceEEEEEee-c-CchhHHHHHHHHHHHHHHHcCCC---C--C-cEEEEECCCCCCCChHHceeeEEEEeCC
Confidence            478899999988887765 3 34445678999999999766532   1  2 2232221  2111111123788888887


Q ss_pred             CCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHH-HHHHHhcCCCCCCCCCCCCCcEEEEEeC-CCCCC
Q 027807          114 KFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADN-LSFSLRRSPWANSTSSDSGYAYSVAQYS-PPLQF  191 (218)
Q Consensus       114 ~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~  191 (218)
                      +..  .| +. +..+.+.++|+.++||..+.|.  -+.+.+.-.. +.+||..+|+..      .+.+.+-.|. .|...
T Consensus        74 ~~~--~~-~~-~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~------~~~p~~E~Y~~~~~~~  141 (156)
T PRK10016         74 DFV--LP-EN-SEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQM------APKPCFEVYLNDGAED  141 (156)
T ss_pred             Ccc--cC-CC-CCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCcc------CCCCCEEEeCCCCCCC
Confidence            632  22 11 2469999999999999999995  4456666666 778999998763      2234444555 34433


Q ss_pred             CCCceeEEEEeec
Q 027807          192 IGRVNEIWVDIDV  204 (218)
Q Consensus       192 ~~R~NEV~i~v~~  204 (218)
                      ..-.=||||+++.
T Consensus       142 ~~~~tei~iPI~~  154 (156)
T PRK10016        142 GYWDIEMYVPVQK  154 (156)
T ss_pred             CcEEEEEEEEeEE
Confidence            2224599999984

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=97.45  E-value=0.02  Score=43.58  Aligned_cols=148  Identities=14%  Similarity=0.112  Sum_probs=96.3

Q ss_pred             CeEEEEeCCCeEEEEEecccccHhHH--HHHHHHHHHHhhhccCCCCCccCCCcceEEEEecC--CCCCccceEEEEEEe
Q 027807           36 DFEVRLYSQSTWMSARVREELSFAKA--TLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG--AGPLHSYAYVVTLYL  111 (218)
Q Consensus        36 ~yEiR~Y~~~~wv~t~v~~~~~~~~a--~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~--~~~~~~~~~t~sf~l  111 (218)
                      +++|+.-++...+.....  .+..+.  ....+.+|..++.-.+...    ...+.+.-....  ..+...-.+.+++.+
T Consensus         2 ~~~i~~~p~~~v~~~~~~--~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   75 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRK--GPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEV   75 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEE--EEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEE--ECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEE
Confidence            478888888888887765  334443  6788999999886432211    344554443322  222223455666666


Q ss_pred             cCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHH-HHhcCCCCCCCCCCCCCcEEEEEeCCCCC
Q 027807          112 PDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSF-SLRRSPWANSTSSDSGYAYSVAQYSPPLQ  190 (218)
Q Consensus       112 P~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~  190 (218)
                      +...      +. ..++....+|+..+++..|.|-.  +.+.+....|.. +|.++|+..     ..+..+-...+.|..
T Consensus        76 ~~~~------~~-~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~~-----~~~~~~E~y~~~~~~  141 (155)
T PF06445_consen   76 DEDV------PN-PDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYER-----RDGPDFEIYLNDPDT  141 (155)
T ss_dssp             CTTC------SG-CTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCEE-----ESSEEEEEEESSTTT
T ss_pred             cccc------cC-CceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCcc-----CCCCcEEEECCCCCC
Confidence            5543      22 35788999999999999999977  677788889999 999999731     233333334445553


Q ss_pred             -CCCCceeEEEEee
Q 027807          191 -FIGRVNEIWVDID  203 (218)
Q Consensus       191 -~~~R~NEV~i~v~  203 (218)
                       ...-.=||||+|+
T Consensus       142 ~~~~~~~ei~iPik  155 (155)
T PF06445_consen  142 DEEEYVTEIYIPIK  155 (155)
T ss_dssp             TSCGEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEC
Confidence             2455669999985

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=96.39  E-value=0.26  Score=39.71  Aligned_cols=146  Identities=18%  Similarity=0.103  Sum_probs=95.0

Q ss_pred             CeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEE--EecCCCCCccceEEEEEEecC
Q 027807           36 DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTS--LVPGAGPLHSYAYVVTLYLPD  113 (218)
Q Consensus        36 ~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~--~~~~~~~~~~~~~t~sf~lP~  113 (218)
                      ++||+..++...|.-.-. +  ...-..++|.+|..+-.-+|--..    +..-+.-  -.|...+-.+-.+-.|..+|.
T Consensus         2 dv~I~e~p~~~VA~~rh~-G--~~~~~~~~~~~l~~W~~~~~l~p~----~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~   74 (154)
T COG3449           2 DVEIIELPPIPVAYLRHV-G--DPATLKQTFEQLIAWRRENGLLPE----QSETLGIYQDDPDTTPAEKCRYDACVVVPE   74 (154)
T ss_pred             CceEEecCCceEEEEEee-C--cHHHHHHHHHHHHHHHHHcCCCCC----CceEEEEecCCCCCCCHHHceeeEEEEcCC
Confidence            789999999998887665 4  556678899999999976553211    2222221  124434444456778888883


Q ss_pred             CCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCCCC
Q 027807          114 KFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIG  193 (218)
Q Consensus       114 ~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~  193 (218)
                      .      .+.++..|..-++|+..+||.+|.|.. ++--..-..-+..||.+.|..      ..+.+.+.+|=...- ..
T Consensus        75 ~------~~~n~~~v~~~~i~GG~YAV~r~~~~~-d~~~~aw~~if~ewlp~Sg~~------~~d~P~~e~y~n~~~-~~  140 (154)
T COG3449          75 P------IPENSEGVQLGEIPGGLYAVARFRGTA-DDLAKAWGYIFGEWLPASGYE------PRDRPILERYLNFPA-ED  140 (154)
T ss_pred             c------cCCCCCceeEeeecCCceEEEEEeccH-HHHHHHHHHHHhhhccccCcc------cCCCchHHHHhccCC-CC
Confidence            3      222367899999999999999999954 223333344556677777754      567788888854443 44


Q ss_pred             CceeEEEEe
Q 027807          194 RVNEIWVDI  202 (218)
Q Consensus       194 R~NEV~i~v  202 (218)
                      -..|+.+.+
T Consensus       141 ~~~e~~vdi  149 (154)
T COG3449         141 PEHEIEVDI  149 (154)
T ss_pred             cceeEEEEE
Confidence            555655554

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=94.04  E-value=2  Score=32.45  Aligned_cols=153  Identities=13%  Similarity=0.041  Sum_probs=82.0

Q ss_pred             eEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEE--ecCCCCCccceEEEEEEecCC
Q 027807           37 FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSL--VPGAGPLHSYAYVVTLYLPDK  114 (218)
Q Consensus        37 yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~--~~~~~~~~~~~~t~sf~lP~~  114 (218)
                      +++..-++...+........+ .....+.|.+|++++...+.......  .+++...  .+...+...-.+.+++.++..
T Consensus         2 ~~i~~~~~~~v~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~   78 (158)
T smart00871        2 VRIVELPAFKVAGLRHRGPYE-EEKIPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDTPEGEFRYDAGVEVSDE   78 (158)
T ss_pred             CEEEEcCCceEEEEEeecCcc-cccHHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCCChhHeEEEEEEEeCCC
Confidence            344445555555544431121 22356788889888865543322211  2222222  121111112345555555543


Q ss_pred             CCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCC--C
Q 027807          115 FQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF--I  192 (218)
Q Consensus       115 ~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~--~  192 (218)
                      ..     .  ...+.+..+|+..+++.+|.|- ..+.+.+...+|..++..+|...   ....+..+-..++.|...  .
T Consensus        79 ~~-----~--~~~~~~~~~p~~~y~~~~~~g~-~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~E~y~~~~~~~~~~  147 (158)
T smart00871       79 VE-----N--PEGVETKEIPAGKYAVFTHKGG-SYDEIQETWEAIYGEWLPNSGYE---LRDAGPDFEIYLNDPADTDPE  147 (158)
T ss_pred             CC-----C--CCCceEEEECCCcEEEEEEcCC-CHHHHHHHHHHHHHhhcccCCCc---cCcCCceEEEEeCCCCCCChh
Confidence            11     1  2358888999999999999993 46678888999998888776431   101122222234444331  3


Q ss_pred             CCceeEEEEee
Q 027807          193 GRVNEIWVDID  203 (218)
Q Consensus       193 ~R~NEV~i~v~  203 (218)
                      ...=||+|+|+
T Consensus       148 ~~~~ei~ipv~  158 (158)
T smart00871      148 ELVTEIYIPIK  158 (158)
T ss_pred             HeEEEEEEEcC
Confidence            45678888874

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=92.93  E-value=0.57  Score=37.77  Aligned_cols=70  Identities=11%  Similarity=-0.072  Sum_probs=53.7

Q ss_pred             CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCC-C-CCCceeEEEEee
Q 027807          127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQ-F-IGRVNEIWVDID  203 (218)
Q Consensus       127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~-~-~~R~NEV~i~v~  203 (218)
                      +|.|.+.|+..||..+-.|  ....+.+-.++|.+|.+++|+..     ..+......||+|-. + ..=|--+-+.+.
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p-----~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~   73 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP-----EQSETLGIYQDDPDTTPAEKCRYDACVVVP   73 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC-----CCceEEEEecCCCCCCCHHHceeeEEEEcC
Confidence            6999999999999989899  78889999999999999999763     335566677888885 3 333444444443

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=92.85  E-value=0.85  Score=35.98  Aligned_cols=70  Identities=9%  Similarity=0.017  Sum_probs=51.6

Q ss_pred             CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCC--CCCCCCceeEEEEeec
Q 027807          127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPP--LQFIGRVNEIWVDIDV  204 (218)
Q Consensus       127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P--~~~~~R~NEV~i~v~~  204 (218)
                      +|.|+++|++.++.++..|...+ .+.+...+|.+++.++|+.      .. ..+...||.|  .....-|-+|.|.+..
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~------~~-~~~~i~~D~p~~~~~~~~R~d~~i~v~~   73 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV------PK-EWVAVYYDNPDEVPAEKLRCDTVVTVPD   73 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC------CC-cEEEEECCCCCCCChHHceeeEEEEeCC
Confidence            58999999999999999997643 4778889999999999875      22 3677888998  4433334555555444

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=89.46  E-value=1.7  Score=32.73  Aligned_cols=73  Identities=14%  Similarity=-0.036  Sum_probs=55.2

Q ss_pred             CeeEEeeCCeEEEEEEeccccChHH-HHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCCCCCceeEEEEeec
Q 027807          127 HLNPFEWDSHCVAVRKFSGFAIDEV-IVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDV  204 (218)
Q Consensus       127 ~V~i~~~p~~~v~v~~F~G~~t~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~~  204 (218)
                      +|+|++.|+++++..+..|...+.. +.+..++|.+++...++..     ....+....||.|..........++-+..
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   75 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLST-----DPGPIIGIYYDNPNITDDEEFRYDIGVEV   75 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC-----SSSSEEEEEEECCTSSTGCEEEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhccc-----CCCcceeEEeccccccCCcceEEEEEEEE
Confidence            5899999999999999999887776 8999999999999887541     34567777788886434555555554443

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		6e-17
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		7e-17
4ayz_B	208	X-Ray Structure Of Human Soul Length = 208		3e-14
4ayz_A	208	X-Ray Structure Of Human Soul Length = 208		1e-13
2hva_A	192	Solution Structure Of The Haem-Binding Protein P22h		4e-09
4a1m_A	195	Nmr Structure Of Protoporphyrin-Ix Bound Murine P22		5e-09
2gov_A	195	Solution Structure Of Murine P22hbp Length = 195		5e-09

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           +E+R Y  + W+S  V E + +  A   GF +L  YIQG N    +I MT+P+ + + PG
Sbjct: 60  YEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 118
Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
           +GP       ++LY+P + Q DPP PL E  +   +     V VR F GF+  +   ++ 
Sbjct: 119 SGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQL 177
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
             L+  LR     +    D    Y  A Y+ P++ + R NE+W+
Sbjct: 178 LTLASILRE----DGKVFDEK-VYYTAGYNSPVKLLNRNNEVWL 216

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           +E+R Y  + W+S  V E + +  A   GF +L  YIQG N    +I MT+P+ + + PG
Sbjct: 41  YEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 99
Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
           +GP       ++LY+P + Q DPP PL E  +   +     V VR F GF+  +   ++ 
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQL 158
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
             L+  LR     +    D    Y+ A Y+ P++ + R NE+W+
Sbjct: 159 LTLASILRE----DGKVFDEKVYYT-AGYNSPVKLLNRNNEVWL 197

>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul Length = 208

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           +E+R Y  + W+S  V E   +  A   GF +L  YIQG N    +I  T+P+ + + PG
Sbjct: 41  YEIRHYGPAKWVSTSV-ESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
           +GP  S    ++LY+P + Q DPP PL E  +   +     V VR F GF+  +   ++ 
Sbjct: 100 SGPFESSTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQL 158
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
             L+  LR     +    D    Y  A Y+ P++ + R NE+W+
Sbjct: 159 LTLASILRE----DGKVFDE-KVYYTAGYNSPVKLLNRNNEVWL 197

>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul Length = 208

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Query: 37  FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG 96
           +E+R Y  + W+S  V E   +  A   GF +L  YIQG N    +I  T+P+ + + PG
Sbjct: 41  YEIRHYGPAKWVSTSV-ESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 97  AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEA 156
           +GP       ++LY+P + Q DPP PL E  +   +     V VR F GF+  +   ++ 
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQL 158
Query: 157 DNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWV 200
             L+  LR     +    D    Y  A Y+ P++ + R NE+W+
Sbjct: 159 LTLASILRE----DGKVFDE-KVYYTAGYNSPVKLLNRNNEVWL 197

>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 68  RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
           ++ +Y+ G N     + MT P+  ++ P           V   +P++FQ  PP P  E  
Sbjct: 63  KIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-S 121
Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
           +   E +   V   +F G+A +   V  A  L  +L  +P     ++  G  Y  A Y P
Sbjct: 122 VKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-----ATYQGDVYYCAGYDP 176
Query: 188 PLQFIGRVNEIWV 200
           P++  GR NE+W+
Sbjct: 177 PMKPYGRRNEVWL 189

>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 68  RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
           ++ +Y+ G N     + MT P+  ++ P           V   +P++FQ  PP P  E  
Sbjct: 66  KIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-S 124
Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
           +   E +   V   +F G+A +   V  A  L  +L  +P     ++  G  Y  A Y P
Sbjct: 125 VKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-----ATYQGDVYYCAGYDP 179
Query: 188 PLQFIGRVNEIWV 200
           P++  GR NE+W+
Sbjct: 180 PMKPYGRRNEVWL 192

>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 68  RLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIH 127
           ++ +Y+ G N     + MT P+  ++ P           V   +P++FQ  PP P  E  
Sbjct: 66  KIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-S 124
Query: 128 LNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSP 187
           +   E +   V   +F G+A +   V  A  L  +L  +P     ++  G  Y  A Y P
Sbjct: 125 VKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-----ATYQGDVYYCAGYDP 179
Query: 188 PLQFIGRVNEIWV 200
           P++  GR NE+W+
Sbjct: 180 PMKPYGRRNEVWL 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	2e-38
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	3e-36
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	2e-34

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  130 bits (328), Expect = 2e-38
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 19  LCKAIESPQYAVVH----EESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQ 74
           L  ++E+  + V+     E+  +E R      + +  V  +    +A      ++ +Y+ 
Sbjct: 14  LFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEV-TDKPVDEALREAMPKIMKYVG 72

Query: 75  GANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWD 134
           G N     + MT P+  ++ P           V   +P++FQ  PP P  E  +   E +
Sbjct: 73  GTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE-SVKIEERE 131

Query: 135 SHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGR 194
              V   +F G+A +   V  A  L  +L  +P         G  Y  A Y PP++  GR
Sbjct: 132 GITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATY-----QGDVYYCAGYDPPMKPYGR 186

Query: 195 VNEIWV 200
            NE+W+
Sbjct: 187 RNEVWL 192

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score =  125 bits (315), Expect = 3e-36
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 11/186 (5%)

Query: 19  LCKAIESPQYAVVH----EESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQ 74
             +A+E+P +        +   +E+R Y  + W+S  V E + +  A   GF +L  YIQ
Sbjct: 19  AAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQ 77

Query: 75  GANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWD 134
           G N    +I MT+P+ + + PG+GP       ++LY+P + Q DPP PL        +  
Sbjct: 78  GKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDV-FIEDRA 136

Query: 135 SHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGR 194
              V VR F GF+  +   ++   L+  LR               Y  A Y+ P++ + R
Sbjct: 137 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK-----VYYTAGYNSPVKLLNR 191

Query: 195 VNEIWV 200
            NE+W+
Sbjct: 192 NNEVWL 197

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score =  121 bits (304), Expect = 2e-34
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 19  LCKAIESPQYAVVHE----ESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQ 74
             +A+E+P +    +       +E+R Y  + W+S  V E + +  A   GF +L  YIQ
Sbjct: 38  AAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQ 96

Query: 75  GANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWD 134
           G N    +I MT+P+ + + PG+GP       ++LY+P + Q DPP PL    +   +  
Sbjct: 97  GKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLES-DVFIEDRA 155

Query: 135 SHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGR 194
              V VR F GF+  +   ++   L+  LR               Y  A Y+ P++ + R
Sbjct: 156 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK-----VYYTAGYNSPVKLLNR 210

Query: 195 VNEIWV 200
            NE+W+
Sbjct: 211 NNEVWL 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	98.54
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	98.43
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	96.95
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	96.56
3lur_A	158	Putative bacterial transcription regulation prote;	93.77
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	93.61
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	90.34
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	86.63

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=3.5e-59  Score=395.38  Aligned_cols=197  Identities=29%  Similarity=0.512  Sum_probs=162.0

Q ss_pred             cccchhHHHHHHHhhh---------hcCCCCCCCCeEEEee----cCCeEEEEeCCCeEEEEEecccccHhHHHHHHHHH
Q 027807            2 ERASKLMKLSTLLCMV---------VLCKAIESPQYAVVHE----ESDFEVRLYSQSTWMSARVREELSFAKATLLGFHR   68 (218)
Q Consensus         2 ~~~~~~~~~~~~~~~~---------~~c~~~e~P~Y~Vl~~----~~~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~   68 (218)
                      |+++-+-+||.++.++         +.|.+.|||+|+||++    .++||||+|++++||+|++. +.++++|...||++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~-~~~~~~A~~~gF~~   90 (227)
T 4b0y_A           12 ESTSLYKKAGTMAEPLQPDPGAAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVE-SMDWDSAIQTGFTK   90 (227)
T ss_dssp             -----------------------------CCBCCCEECCC------CCSEEEEECCEEEEEEEEE-ESCHHHHHHHHHHH
T ss_pred             chhhhhhhcceEEecCCCCcccccccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEe-CCCHHHHHHHHHHH
Confidence            6777778899999884         5578999999999999    89999999999999999998 88999999999999


Q ss_pred             HHHhhhccCCCCCccCCCcceEEEEecCCCCCccceEEEEEEecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccC
Q 027807           69 LFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAI  148 (218)
Q Consensus        69 L~~YI~G~N~~~~~i~MT~PV~~~~~~~~~~~~~~~~t~sf~lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t  148 (218)
                      |++||+|+|+++++|+||+||++++.+++++.|++.++|+|+||++||++||+|+ |++|+|+++|+++|||++|+|+++
T Consensus        91 L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-D~~V~i~~~p~~~vaVr~FsG~~~  169 (227)
T 4b0y_A           91 LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSS  169 (227)
T ss_dssp             HHHHHHTCBTTCCCCCCBSCEEEEEECCC--CCCEEEEEEEECCGGGSSSCCCBS-SSSEEEEEECCEEEEEEEESSCCC
T ss_pred             HHHHhhcCCCCCCccccccCEEEEEecCCCcccCceEEEEEEcChhhccCCCCCC-CCceEEEEeCCEEEEEEEecCcCC
Confidence            9999999999999999999999999998888899999999999999999999999 899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCCCCCceeEEEEeecC
Q 027807          149 DEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDVS  205 (218)
Q Consensus       149 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~~~  205 (218)
                      ++++.+++++|+++|+++|+.+     ..+.|++|+||+||++++|||||||.++..
T Consensus       170 ~~~~~~~~~~L~~~L~~~g~~~-----~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~e  221 (227)
T 4b0y_A          170 AQKNQEQLLTLASILREDGKVF-----DEKVYYTAGYNSPVKLLNRNNEVWLIQKNE  221 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCB-----CSSCEEEEECC---CCCSSCEEEEEEBC--
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc-----CCCcEEEEEeCCCCCcCCceeEEEEEECCC
Confidence            9999999999999999999874     456789999999999999999999998753

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=3.9e-58  Score=381.71  Aligned_cols=179  Identities=23%  Similarity=0.412  Sum_probs=169.9

Q ss_pred             hcCCCCCCCCeEEEeecCC----eEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEE
Q 027807           18 VLCKAIESPQYAVVHEESD----FEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSL   93 (218)
Q Consensus        18 ~~c~~~e~P~Y~Vl~~~~~----yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~   93 (218)
                      +.|.+.|||+|+||++.++    ||||+|++++||+|++. ++++++|...||++|++||+|+|+++++|+||+||++++
T Consensus        13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~-~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~   91 (195)
T 2gov_A           13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVT-DKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAV   91 (195)
T ss_dssp             CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEE-SSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEE
T ss_pred             cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEec-CCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEE
Confidence            5689999999999999887    99999999999999998 889999999999999999999999999999999999999


Q ss_pred             ecCCCCCccceEEEEEEecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCC
Q 027807           94 VPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTS  173 (218)
Q Consensus        94 ~~~~~~~~~~~~t~sf~lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~  173 (218)
                      .+.+++.|.+.++|+|+||++||++||+|+ |++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+.+   
T Consensus        92 ~p~~~~~~~~~~tvsF~lP~~~~~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~---  167 (195)
T 2gov_A           92 FPNEDGSLQKKLKVWFRIPNQFQGSPPAPS-DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATY---  167 (195)
T ss_dssp             EECTTSCEEEEEEEEECCCHHHHHSCCCBC-SSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCCE---
T ss_pred             cCCCCCCcCceEEEEEEcchhcccCCCCCC-CCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCcc---
Confidence            888888899999999999999999999998 8999999999999999999999999999999999999999999874   


Q ss_pred             CCCCCcEEEEEeCCCCCCCCCceeEEEEee
Q 027807          174 SDSGYAYSVAQYSPPLQFIGRVNEIWVDID  203 (218)
Q Consensus       174 ~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~  203 (218)
                        ..+.|++|+||+||++++|||||||+.+
T Consensus       168 --~~~~~~~a~Yn~P~~~~~RrNEV~i~~~  195 (195)
T 2gov_A          168 --QGDVYYCAGYDPPMKPYGRRNEVWLVKA  195 (195)
T ss_dssp             --EEEEEEEEESSCCSSSSCCEEEEEEEEC
T ss_pred             --cCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence              3566899999999999999999999863

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=1.9e-57  Score=381.58  Aligned_cols=180  Identities=29%  Similarity=0.549  Sum_probs=168.9

Q ss_pred             hcCCCCCCCCeEEEee----cCCeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEE
Q 027807           18 VLCKAIESPQYAVVHE----ESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSL   93 (218)
Q Consensus        18 ~~c~~~e~P~Y~Vl~~----~~~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~   93 (218)
                      +-+.++|||+|+||++    .++||||+|++++||+|++. +.++++|...||++|++||+|+|.++++|+||+||++++
T Consensus        18 ~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~-~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~   96 (212)
T 3r8j_A           18 AAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVE-SMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYV   96 (212)
T ss_dssp             ----CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEE-ESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEE
T ss_pred             hhcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEe-CCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEE
Confidence            3457899999999999    79999999999999999998 889999999999999999999999999999999999999


Q ss_pred             ecCCCCCccceEEEEEEecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCC
Q 027807           94 VPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTS  173 (218)
Q Consensus        94 ~~~~~~~~~~~~t~sf~lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~  173 (218)
                      .+++++.|.+.++|+|+||++||++||+|+ |++|+|+++|+++|||++|+|+++++++.+++++|+++|+++|+.+   
T Consensus        97 ~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~---  172 (212)
T 3r8j_A           97 EPGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVF---  172 (212)
T ss_dssp             ECTTSTTSCEEEEEEEECCHHHHSSCCCBS-STTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCB---
T ss_pred             ecCCCcccCceEEEEEEcChHHccCCCCCC-CCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCcc---
Confidence            998888899999999999999999999999 8999999999999999999999999999999999999999999874   


Q ss_pred             CCCCCcEEEEEeCCCCCCCCCceeEEEEeec
Q 027807          174 SDSGYAYSVAQYSPPLQFIGRVNEIWVDIDV  204 (218)
Q Consensus       174 ~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~~  204 (218)
                        ..+.|++|+||+||++++|||||||.++.
T Consensus       173 --~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~  201 (212)
T 3r8j_A          173 --DEKVYYTAGYNSPVKLLNRNNEVWLIQKN  201 (212)
T ss_dssp             --CSSCEEEEESSSSSCCSSSCEEEEEEBCC
T ss_pred             --CCCcEEEEEeCCCCCcCCceeEEEEEeCC
Confidence              45678999999999999999999999884

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=98.54  E-value=3.9e-06  Score=63.17  Aligned_cols=149  Identities=14%  Similarity=0.079  Sum_probs=99.5

Q ss_pred             CeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEEe--cCCCCCccceEEEEEEecC
Q 027807           36 DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLV--PGAGPLHSYAYVVTLYLPD  113 (218)
Q Consensus        36 ~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~--~~~~~~~~~~~t~sf~lP~  113 (218)
                      +++|+..++...+.....  .++++....+|.+|++++..+|-..      .+.+.-..  +...+...-.+.+++.+|.
T Consensus         2 ~~~i~~~~~~~v~~~~~~--g~~~~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~~~~~~~~~~~~~~~~~~~v~~   73 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFHLV--GPWEQTVKKGFEQLMMWVDSKNIVP------KEWVAVYYDNPDETPAEKLRCDTVVTVPG   73 (157)
T ss_dssp             CCEEEEECCEEEEEEEEE--SCHHHHHHHHHHHHHHHHHHTTCCC------SEEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred             CCEEEEeCCeEEEEEEEE--CCchhhHHHHHHHHHHHHHHcCCCC------CcEEEEECCCCCCCCHHHheEEEEEEecC
Confidence            478999999988877665  3454566789999999997665322      13332111  1111112346788888886


Q ss_pred             CCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEeC-CCCCC
Q 027807          114 KFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLS-FSLRRSPWANSTSSDSGYAYSVAQYS-PPLQF  191 (218)
Q Consensus       114 ~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~  191 (218)
                      ....  | |. ++.+.+.++|+.+++|..|.|...  .+.+.-++|. ++|.++|+..      .+.+.+-.|. .|..+
T Consensus        74 ~~~~--~-~~-~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~~------~~~~~~E~Y~~~~~~~  141 (157)
T 1jyh_A           74 YFTL--P-EN-SEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEM------LPKPCFEVYLNNGAED  141 (157)
T ss_dssp             TCCC--C-SS-CTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEEE------CSSCEEEEECSCHHHH
T ss_pred             cccc--C-CC-CCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCcc------CCCceEEEecCCCCCc
Confidence            5432  2 32 457999999999999999999863  3566677775 8999888652      3345667774 22233


Q ss_pred             CCCceeEEEEeec
Q 027807          192 IGRVNEIWVDIDV  204 (218)
Q Consensus       192 ~~R~NEV~i~v~~  204 (218)
                      ...+.||||+|+.
T Consensus       142 ~~~~tei~ipi~~  154 (157)
T 1jyh_A          142 GYWDIEMYVAVQP  154 (157)
T ss_dssp             SSEEEEEEEEEEE
T ss_pred             ccEEEEEEEEeee
Confidence            4567799999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=98.43  E-value=3.6e-05  Score=59.53  Aligned_cols=146  Identities=10%  Similarity=0.002  Sum_probs=98.6

Q ss_pred             CeEEEEeCCCeEEEEEecccccHhH---HHHHHHHHHHHhhhccCCCCCccCCCcceEEEEecCCCCCccceEEEEEEec
Q 027807           36 DFEVRLYSQSTWMSARVREELSFAK---ATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLP  112 (218)
Q Consensus        36 ~yEiR~Y~~~~wv~t~v~~~~~~~~---a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~~~~~~~~~~t~sf~lP  112 (218)
                      +++|+..++...+..... + ++.+   ...++|.+|..++..+|-     ..+.|.+.-.....  ..+-++.+++.++
T Consensus         8 ~v~I~~~p~~~va~ir~~-~-~~~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~--~~~~~~~~~~~v~   78 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQ-T-TMSELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMS--AGTFEVEFGFPVE   78 (158)
T ss_dssp             CEEEEEECCCEEEEEEEE-E-CHHHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCT--TSCEEEEEEEECC
T ss_pred             ccEEEeeCCceEEEEEee-c-CHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCC--CcceEEEEEEEeC
Confidence            678999999998887765 2 2332   345789999999876543     23444444332211  1123455665555


Q ss_pred             CCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCC-C
Q 027807          113 DKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQ-F  191 (218)
Q Consensus       113 ~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~-~  191 (218)
                      ...      +. +..|.+.++|+.++++.++.|...+  +.+.-++|.+||.++|+..      .+..+-..+++|.. .
T Consensus        79 ~~~------~~-~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~------~~~~~E~Y~~~p~~~~  143 (158)
T 3e0h_A           79 GGV------EG-SGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDL------SGEAYEIYLDNPAETA  143 (158)
T ss_dssp             SCC------CC-BTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCE------EEEEEEEECSCTTSSC
T ss_pred             CCC------CC-CCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCc------CCCEEEEEeCCCCCCC
Confidence            431      22 3579999999999999999997654  7788888999999999762      33333334567775 2


Q ss_pred             -CCCceeEEEEeecC
Q 027807          192 -IGRVNEIWVDIDVS  205 (218)
Q Consensus       192 -~~R~NEV~i~v~~~  205 (218)
                       ...+.||||+|+++
T Consensus       144 ~~~~~tei~ipv~~~  158 (158)
T 3e0h_A          144 PDQLRTRVSLMLHES  158 (158)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             HHHhEEEEEEEEcCC
Confidence             57799999999863

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=96.95  E-value=0.056  Score=43.76  Aligned_cols=160  Identities=8%  Similarity=-0.001  Sum_probs=96.4

Q ss_pred             CCeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhh------hccCCCCCc-cCCCc-ceEEEEe---cCCC-CCcc
Q 027807           35 SDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYI------QGANLNNSR-IAMTS-PIVTSLV---PGAG-PLHS  102 (218)
Q Consensus        35 ~~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI------~G~N~~~~~-i~MT~-PV~~~~~---~~~~-~~~~  102 (218)
                      .+++|+.-++...+..... +...++....+|.+|+..+      ..++-.... -+.+. |...-..   +... +..+
T Consensus        23 ~~v~i~~~p~~~v~~i~~~-g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~~~~~~~  101 (211)
T 3b49_A           23 RKPERIFVPEMNFLMVDGK-GDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDA  101 (211)
T ss_dssp             SSCEEEEEEEEEEEEEEEE-SCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCCTTCGGG
T ss_pred             CCcEEEEECCeeEEEEEee-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccccCchhh
Confidence            3688888898888877665 4323335678999999987      433321111 12222 3322211   1111 2223


Q ss_pred             ceEEEEEEecCCCCCC------------CCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCC
Q 027807          103 YAYVVTLYLPDKFQSD------------PPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWAN  170 (218)
Q Consensus       103 ~~~t~sf~lP~~~~~~------------~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~  170 (218)
                      -.|.+++.+|...+..            .|.+. ...|.+.++|+..+++.++.|...  .+.+-.+.|.++|.++|+..
T Consensus       102 ~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~-~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~  178 (211)
T 3b49_A          102 WLWTSILRQPDFVTEEVLEWAKEVARKKKPDVD-TSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRN  178 (211)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSC-CTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCB
T ss_pred             eEEEEEEEcCCcccHHHHHHHHHHHhccCCCCC-cccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCcc
Confidence            4677788778654310            12222 357999999999999999999765  35677788889999999731


Q ss_pred             CCCCCCC--CcEEEEEe-CCCCCC--CCCceeEEEEee
Q 027807          171 STSSDSG--YAYSVAQY-SPPLQF--IGRVNEIWVDID  203 (218)
Q Consensus       171 ~~~~~~~--~~~~~A~Y-d~P~~~--~~R~NEV~i~v~  203 (218)
                           ..  +.+.+-.| +.|...  ..-+=||+++|+
T Consensus       179 -----~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          179 -----DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             -----CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             -----ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence                 12  13344444 667642  334678998874

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=96.56  E-value=0.072  Score=44.59  Aligned_cols=151  Identities=7%  Similarity=-0.063  Sum_probs=90.1

Q ss_pred             cCCeEEEEeCCCeEEEEEecccccHhHHH-HHHHHHHHHhhhccCCCCCccCCCcceEEEEecCC-CCCccceE-EEEEE
Q 027807           34 ESDFEVRLYSQSTWMSARVREELSFAKAT-LLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGA-GPLHSYAY-VVTLY  110 (218)
Q Consensus        34 ~~~yEiR~Y~~~~wv~t~v~~~~~~~~a~-~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~~-~~~~~~~~-t~sf~  110 (218)
                      ..+++|+..++...+..... ..+. +.. ..+|.+|.+++...+     +..+.|+........ .+.....+ .+++.
T Consensus       121 ~~~v~I~~~p~~~v~~~~~~-~~~~-~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~~~~~~~~~~~~~~v~  193 (278)
T 1r8e_A          121 LGEVFVLDEEEIRIIQTEAE-GIGP-ENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQPYTSIDEMTYRHIFTP  193 (278)
T ss_dssp             TTCCEEEEECCEEEEEEECT-TCCT-TTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCCCSCGGGCCCSEEEEE
T ss_pred             CCceEEEEcCCeEEEEeecC-CCCh-HhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHHhhcCCCcceeEEEEE
Confidence            34688999999887776552 1211 222 467888999986543     233456544332111 11001111 24444


Q ss_pred             ecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCC
Q 027807          111 LPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQ  190 (218)
Q Consensus       111 lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~  190 (218)
                      ++...   .|.|. +..|.+..+|+..+++..+.|..  +.+.+....|.+||.++|+..      .+..+--..+.|+.
T Consensus       194 v~~~~---~~l~~-~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~------~g~~~E~y~~~~~~  261 (278)
T 1r8e_A          194 VLTNK---QISSI-TPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTV------VSDVYELIIPIHYS  261 (278)
T ss_dssp             CCCCS---CCSSC-CTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCE------EEEEEEEEEESCCC
T ss_pred             ecCcc---ccccc-cCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCcc------CCCeEEEEeecccc
Confidence            44321   11222 35689999999999999999965  456777788889999999762      33333334446664


Q ss_pred             C---CCCceeEEEEee
Q 027807          191 F---IGRVNEIWVDID  203 (218)
Q Consensus       191 ~---~~R~NEV~i~v~  203 (218)
                      .   ..-.-||||+|+
T Consensus       262 ~~~~~~~~teI~iPv~  277 (278)
T 1r8e_A          262 PKKQEEYRVEMKIRIA  277 (278)
T ss_dssp             SSSCCCEEEEEEEEEC
T ss_pred             cCChhheEEEEEEEec
Confidence            2   234679999986

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=93.77  E-value=0.63  Score=35.39  Aligned_cols=71  Identities=11%  Similarity=0.085  Sum_probs=50.2

Q ss_pred             CeeEEeeCCeEEEEEEeccccChHHHHHHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCC-CCCceeEEEEeec
Q 027807          127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNL-SFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF-IGRVNEIWVDIDV  204 (218)
Q Consensus       127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEV~i~v~~  204 (218)
                      .+...++|+.++||-++.|-..+ .+.+--+.+ ..||-+.|+..      .+.+-+-.|...-.. ..-.-||||+|++
T Consensus        86 ~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~~------~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~  158 (158)
T 3lur_A           86 KYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANTV------KSAPFFELYQDGDTTSEKYITEIWMPVKG  158 (158)
T ss_dssp             GSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTTB------CSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred             CcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCee------CCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence            57888999999999999996544 455555555 46898888663      345667778764322 4556799999864

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=93.61  E-value=2.6  Score=34.77  Aligned_cols=72  Identities=7%  Similarity=0.001  Sum_probs=50.2

Q ss_pred             CCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHH-HHHhcCCCCCCCCCCCCCcEEEEEeC---CCC-CCC--CCceeE
Q 027807          126 IHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLS-FSLRRSPWANSTSSDSGYAYSVAQYS---PPL-QFI--GRVNEI  198 (218)
Q Consensus       126 ~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~A~Yd---~P~-~~~--~R~NEV  198 (218)
                      ..+...++|+.++||..+.|.  .+.+.+--..|. +||.+.|+..      .+.+-+-.|.   .|. ...  .-.-||
T Consensus       210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~------~~~p~~E~Y~~~~~~~~~~~~~~~~tEI  281 (292)
T 1d5y_A          210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR------RKGQDIERYYPAEDAKAGDRPINLRCEL  281 (292)
T ss_dssp             TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE------CSSCEEEEECGGGC----CCSCEEEEEE
T ss_pred             CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc------CCCCcEEEEeeccccCCCCCCCceEEEE
Confidence            358888999999999999994  456777788885 8999998652      2334455665   332 221  224599


Q ss_pred             EEEeecC
Q 027807          199 WVDIDVS  205 (218)
Q Consensus       199 ~i~v~~~  205 (218)
                      ||+|+..
T Consensus       282 ~iPI~~k  288 (292)
T 1d5y_A          282 LIPIRRK  288 (292)
T ss_dssp             EEEEECC
T ss_pred             EEEeehh
Confidence            9999874

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=90.34  E-value=1.9  Score=33.37  Aligned_cols=65  Identities=11%  Similarity=0.028  Sum_probs=46.5

Q ss_pred             CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCC--CCCCCCCCCCCcEEEEEeCCCCCCCCCceeEEEEee
Q 027807          127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSP--WANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDID  203 (218)
Q Consensus       127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~  203 (218)
                      .+...++|+.++||-++.|-.. +.+.+--+.+..||-..|  +.      ..+.+-+-.|+...     .-||||+|+
T Consensus       104 g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~------~~~~pdfE~Y~~~~-----~~eI~IpI~  170 (170)
T 3gk6_A          104 ESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK------RAYTTDFEYYKSAN-----TVEISIAVR  170 (170)
T ss_dssp             TCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC------BCCSEEEEECCSSS-----EEEEEEEBC
T ss_pred             CcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce------ecCcCCEEEECCCC-----eEEEEEEEC
Confidence            5788899999999999999543 456666677777999888  44      34566777786532     679999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=86.63  E-value=4.5  Score=30.14  Aligned_cols=70  Identities=4%  Similarity=-0.162  Sum_probs=47.8

Q ss_pred             CeeEEeeCCeEEEEEEeccccCh--HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCCCCCceeEEEEeec
Q 027807          127 HLNPFEWDSHCVAVRKFSGFAID--EVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNEIWVDIDV  204 (218)
Q Consensus       127 ~V~i~~~p~~~v~v~~F~G~~t~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEV~i~v~~  204 (218)
                      +|+|++.|+..++.++..|...+  ..+.+--++|.+++..+|+.      ..+..+...||  +....=+=|+.+++..
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~------~~g~~~~iy~d--~~~~~~~~~~~~~v~~   79 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS------PSGPPFARYFG--MSAGTFEVEFGFPVEG   79 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC------CSSCCEEEEES--CTTSCEEEEEEEECCS
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCeEEEEec--CCCcceEEEEEEEeCC
Confidence            69999999999999999997422  23445667799999988865      24444444445  2223446688888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	9e-43

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  140 bits (353), Expect = 9e-43
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 11/183 (6%)

Query: 22  AIESPQYAVVH----EESDFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGAN 77
           ++E+  + V+     E+  +E R      + +  V  +    +A      ++ +Y+ G N
Sbjct: 6   SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEV-TDKPVDEALREAMPKIMKYVGGTN 64

Query: 78  LNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHC 137
                + MT P+  ++ P           V   +P++FQ  PP P  E        +   
Sbjct: 65  DKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEE-REGIT 123

Query: 138 VAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFIGRVNE 197
           V   +F G+A +   V  A  L  +L  +P         G  Y  A Y PP++  GR NE
Sbjct: 124 VYSTQFGGYAKEADYVAHATQLRTTLEGTPATY-----QGDVYYCAGYDPPMKPYGRRNE 178

Query: 198 IWV 200
           +W+
Sbjct: 179 VWL 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	98.3
d1r8ea2	157	Multidrug-binding domain of transcription activato	97.22
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	87.04

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-56  Score=367.81  Aligned_cols=175  Identities=23%  Similarity=0.418  Sum_probs=165.3

Q ss_pred             CCCCCCCeEEEeecC----CeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEEecC
Q 027807           21 KAIESPQYAVVHEES----DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPG   96 (218)
Q Consensus        21 ~~~e~P~Y~Vl~~~~----~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~   96 (218)
                      .++|||+|+||++.+    +||+|+|++++||||++. ++++++|..+||++|++||+|+|+++++|+||+||++++.+.
T Consensus         5 ~~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~~~-~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~   83 (184)
T d2gova1           5 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVT-DKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPN   83 (184)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEE-SSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEEC
T ss_pred             ccccCCCcEEEEECCccCCCEEEEecCCceEEEEEec-CCChhhHHHhhhHHHhheeccCCCCCcccccccceEEEEecC
Confidence            589999999999865    799999999999999998 899999999999999999999999999999999999999988


Q ss_pred             CCCCccceEEEEEEecCCCCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027807           97 AGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDS  176 (218)
Q Consensus        97 ~~~~~~~~~t~sf~lP~~~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~  176 (218)
                      +++.|.+.++|+|+||++|+++||+|+ |++|+|+++|+.++||++|+|+++++++.+++++|+++|+++|+.+     .
T Consensus        84 ~~~~~~~~~~m~F~lP~~~~~~~P~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~-----~  157 (184)
T d2gova1          84 EDGSLQKKLKVWFRIPNQFQGSPPAPS-DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATY-----Q  157 (184)
T ss_dssp             TTSCEEEEEEEEECCCHHHHHSCCCBC-SSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCCE-----E
T ss_pred             CCCcccCcEEEEEEcchhhcccCCCCc-cccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHHHHCCCcc-----c
Confidence            888899999999999999998999999 8999999999999999999999999999999999999999999874     3


Q ss_pred             CCcEEEEEeCCCCCCCCCceeEEEEe
Q 027807          177 GYAYSVAQYSPPLQFIGRVNEIWVDI  202 (218)
Q Consensus       177 ~~~~~~A~Yd~P~~~~~R~NEV~i~v  202 (218)
                      .+.+++|+||+||+|++|||||||..
T Consensus       158 ~~~~~~a~Yd~P~~p~~R~NEVw~vk  183 (184)
T d2gova1         158 GDVYYCAGYDPPMKPYGRRNEVWLVK  183 (184)
T ss_dssp             EEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred             CCCEEEEEeCCCCCCCCcceeEEEEe
Confidence            45678899999999999999999953

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.1e-05  Score=60.23  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=100.2

Q ss_pred             CeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEE-ecCCCCCccceEEEEEEecCC
Q 027807           36 DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSL-VPGAGPLHSYAYVVTLYLPDK  114 (218)
Q Consensus        36 ~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~-~~~~~~~~~~~~t~sf~lP~~  114 (218)
                      +|||+..++.+.+.....  +++.+...++|.+|..++..++     +..+.+...-. .+...+..+-.+.+++.++..
T Consensus         2 ~~~I~~l~~~~V~g~r~~--g~~~e~i~~~w~~l~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~v~v~~~   74 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLV--GPWEQTVKKGFEQLMMWVDSKN-----IVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGY   74 (155)
T ss_dssp             CCEEEEECCEEEEEEEEE--SCHHHHHHHHHHHHHHHHHHTT-----CCCSEEEEEECSCTTTSCGGGCEEEEEEEECTT
T ss_pred             CcEEEEECCEEEEEEEEE--cCcHHHHHHHHHHHHHHHHHhC-----CCCCCceEEEecCcCcCCccceeEEEEEEcCCc
Confidence            689999999999987765  4577778899999999998654     23334332221 222223334568888888876


Q ss_pred             CCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEeC-CCCCCC
Q 027807          115 FQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNL-SFSLRRSPWANSTSSDSGYAYSVAQYS-PPLQFI  192 (218)
Q Consensus       115 ~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~A~Yd-~P~~~~  192 (218)
                      ...  |..  +..|.+.++|+.++|+..+.|-..+  +.+....| .+||.++|+..      .+.+.+-.|. .|....
T Consensus        75 ~~~--~~~--~~~i~~~~lp~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~~------~~~p~~E~Y~~~~~~~~  142 (155)
T d1jyha_          75 FTL--PEN--SEGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYEM------LPKPCFEVYLNNGAEDG  142 (155)
T ss_dssp             CCC--CSS--CTTCEEEEECCEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEEE------CSSCEEEEECSCHHHHS
T ss_pred             ccc--Ccc--cceEEEEEECCccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCeE------CCCccEEEEcCCCCCCC
Confidence            533  222  3469999999999999999997543  33444455 57999998763      3345555565 333222


Q ss_pred             CCceeEEEEeec
Q 027807          193 GRVNEIWVDIDV  204 (218)
Q Consensus       193 ~R~NEV~i~v~~  204 (218)
                      .-.=||||+|++
T Consensus       143 ~~~~ei~iPIk~  154 (155)
T d1jyha_         143 YWDIEMYVAVQP  154 (155)
T ss_dssp             SEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            223499999986

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.22  E-value=0.0031  Score=47.18  Aligned_cols=150  Identities=6%  Similarity=-0.092  Sum_probs=92.7

Q ss_pred             CeEEEEeCCCeEEEEEecccccHhHHHHHHHHHHHHhhhccCCCCCccCCCcceEEEEecCC-CCCccceEEEEEEecCC
Q 027807           36 DFEVRLYSQSTWMSARVREELSFAKATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGA-GPLHSYAYVVTLYLPDK  114 (218)
Q Consensus        36 ~yEiR~Y~~~~wv~t~v~~~~~~~~a~~~gF~~L~~YI~G~N~~~~~i~MT~PV~~~~~~~~-~~~~~~~~t~sf~lP~~  114 (218)
                      +.-|+.=+.-..+.+... ..+-......+|.+|++|+..+|.-     ...++.......+ .......+.-.|.....
T Consensus         3 ev~i~~~~ei~i~~~~~e-~i~p~~~~~~~~~~L~~~~~~~~~~-----~~~~~G~~~~~~~~~~~~~~~y~~~~~~~~~   76 (157)
T d1r8ea2           3 EVFVLDEEEIRIIQTEAE-GIGPENVLNASYSKLKKFIESADGF-----TNNSYGATFSFQPYTSIDEMTYRHIFTPVLT   76 (157)
T ss_dssp             CCEEEEECCEEEEEEECT-TCCTTTCCGGGGHHHHHHHHHHHSS-----CCCCEEEEECCCCCSCGGGCCCSEEEEECCC
T ss_pred             ceEEeccCcEEEEEEEec-ccCchHHHHHHHHHHHHHHHHcCCC-----CCCceEEEEECCCcccCcceEEEEEEEeccc
Confidence            445666667777777765 4433445567999999999876532     3345544432111 11112233333333222


Q ss_pred             CCCCCCCCCCCCCeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCC---
Q 027807          115 FQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF---  191 (218)
Q Consensus       115 ~~~~~P~P~~d~~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~---  191 (218)
                       ...++.+  ++++.+...|+.++++..|.|...  .+.+.-++|.+|+.++|+..      .+..+=-..++|+..   
T Consensus        77 -~~~~~~~--~~~~~~~~lp~G~ya~~~~~G~y~--~~~~~y~~l~~~~~~~g~~~------~g~~~E~y~~d~~~~~~~  145 (157)
T d1r8ea2          77 -NKQISSI--TPDMEITTIPKGRYACIAYNFSPE--HYFLNLQKLIKYIADRQLTV------VSDVYELIIPIHYSPKKQ  145 (157)
T ss_dssp             -CSCCSSC--CTTSEEEEECSEEEEEEEEECCHH--HHHHHHHHHHHHHHHTTCCE------EEEEEEEEEESCCCSSSC
T ss_pred             -ccccCCc--cCCceEEecCCeEEEEEEEEECcc--chHHHHHHHHHHHHhcCcCc------CCCeEEEEEcCCCCCCCH
Confidence             1222333  367999999999999999999763  67788888999999999763      343333344777753   


Q ss_pred             CCCceeEEEEe
Q 027807          192 IGRVNEIWVDI  202 (218)
Q Consensus       192 ~~R~NEV~i~v  202 (218)
                      ..-.-||.|+|
T Consensus       146 ~~~~teI~ipv  156 (157)
T d1r8ea2         146 EEYRVEMKIRI  156 (157)
T ss_dssp             CCEEEEEEEEE
T ss_pred             HHeEEEEEEEe
Confidence            34466777776

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=3.3  Score=28.81  Aligned_cols=70  Identities=11%  Similarity=0.032  Sum_probs=51.8

Q ss_pred             CeeEEeeCCeEEEEEEeccccChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeCCCCCC--CCCceeEEEEeec
Q 027807          127 HLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQF--IGRVNEIWVDIDV  204 (218)
Q Consensus       127 ~V~i~~~p~~~v~v~~F~G~~t~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~A~Yd~P~~~--~~R~NEV~i~v~~  204 (218)
                      +++|++.|+.+|+..+..|-. .+.+.+--++|.+++.++++.       .+......||.|-..  ..-+-++.+.+..
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~~~v~v~~   73 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV-------PKEWVAVYYDNPDETPAEKLRCDTVVTVPG   73 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC-------CSEEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCC-------CCCceEEEecCcCcCCccceeEEEEEEcCC
Confidence            478999999999888888854 445778888999999998864       234556667877653  2346777777754