Citrus Sinensis ID: 027817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccccHHHHHHHcccccccEEEEEcccccccccEEEEccccccccccHHHHHHHHcccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccEEccccc
Coil and Loop (DISEMBL)
mlinrflrrgfctavarpwlfvglgnpgdkykgtrhnvGFEMIDAFAEsqgismntvhckatfgqgfvgdapvllakpqtymnlsgestgplaayyklplnrvlvfhddmglpcgvlrlrhngghgghngLKSVMNNFRGNREFARLRigigrppgqmdpkAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Flexible Loop (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIgrppgqmdPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSkgltesarhfntiqkykhirlqnmpa
Low Complexity Region (SEG)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVlrlrhngghgghnglKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered region (IsUnstruct)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI*******
Disordered Region (DISOPRED)
**************VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT**************
Disordered Region (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered Region (DISPRO)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK**RL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q6NLS8	219	Peptidyl-tRNA hydrolase,	yes	no	0.967	0.963	0.759	1e-91
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.899	0.765	0.581	1e-66
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.880	0.741	0.583	4e-65
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.889	0.673	0.561	3e-64
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.894	0.78	0.553	3e-63
Q9LF14	240	Chloroplastic group IIB i	no	no	0.880	0.8	0.578	2e-62
Q9FKN4	246	Chloroplastic group IIB i	no	no	0.880	0.780	0.593	2e-62
Q10LI6	186	CRS2-like protein, chloro	no	no	0.532	0.623	0.75	1e-44
Q47SW2	213	Peptidyl-tRNA hydrolase O	yes	no	0.821	0.840	0.433	5e-43
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.853	0.989	0.409	5e-40

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  335 bits (859), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 181/212 (85%), Gaps = 1/212 (0%)

Query: 2   LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct: 1   MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 61  AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 180
             GGHG HNGLKSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D AL
Sbjct: 121 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKAL 180

Query: 181 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 212
            EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct: 181 AEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  252 bits (643), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 149/196 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 61  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 120

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +
Sbjct: 121 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 180

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + 
Sbjct: 181 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 240

Query: 198 SARHFNTIQKYKHIRL 213
           S   FN +QKYK  R+
Sbjct: 241 STERFNLVQKYKFHRV 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  247 bits (631), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 144/192 (75%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVLL K
Sbjct: 64  PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVK 123

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GVLRL+  GGHG HNGL++VM  
Sbjct: 124 PQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMEC 183

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
              +RE  RL IGIG PPG+MD +AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + 
Sbjct: 184 LDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSG 243

Query: 198 SARHFNTIQKYK 209
           S   FN +QKYK
Sbjct: 244 SIERFNLVQKYK 255

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 151/194 (77%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL   GGHGGHNG++S+++ 
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
            +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  +
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query: 198 SARHFNTIQKYKHI 211
           SA   NT +  + +
Sbjct: 274 SATFVNTRKSMEQL 287

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 149/195 (76%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
           +PWLFVGLGNPG  Y+GTRHNVGFEMID  AE++GIS++++  KA  G+G +GDAP++LA
Sbjct: 54  KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLA 113

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP   LRL   GGHGGHNG++S++N
Sbjct: 114 KPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIIN 173

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 196
           + + NR+F RLRIGIGRPPG+MDP  F+L+ FN   +E +D A   G+E ++++  +G  
Sbjct: 174 HLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFN 233

Query: 197 ESARHFNTIQKYKHI 211
           +SA + NT Q  + +
Sbjct: 234 KSATYVNTAQSSEML 248

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  238 bits (608), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 141/192 (73%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQTYMN SGES G LA++Y++PL  +L+ +D+M LP GVLRL+  GG G HNG+KSVM +
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  +
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224

Query: 198 SARHFNTIQKYK 209
               FN +QKYK
Sbjct: 225 GISRFNLVQKYK 236

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 140/192 (72%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL K
Sbjct: 51  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GVLRL+  GGH  HNGLK+V  +
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 170

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G ++
Sbjct: 171 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 230

Query: 198 SARHFNTIQKYK 209
           S   FN  QKYK
Sbjct: 231 SISRFNLGQKYK 242

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 95/116 (81%)

Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVL 74
           V  PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+     KA FG+G V   PVL
Sbjct: 57  VINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVL 116

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           LAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGVLRL+  GG+G HNG
Sbjct: 117 LAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 119/180 (66%), Gaps = 1/180 (0%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
           WL VGLGNPG KY G RHNVGF ++D  A  +G         A   +  VGDAPV+LAKP
Sbjct: 35  WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKP 94

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
            +YMNLSG     L+A+YK+P++R++V HD++ +P   L+L+  GG  GHNGL+S+  + 
Sbjct: 95  ASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL 154

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 198
            G+ ++ R+R+GIGRPPG+MD  +F+LQ F+   R+ +D  +    + ++ +++ GL ++
Sbjct: 155 -GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermobifida fusca (strain YX) (taxid: 269800)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  164 bits (415), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 113/188 (60%), Gaps = 2/188 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
           WL VGLGNPG++Y  TRHN+GF  ++  AE  G++      K+   +G +    V L KP
Sbjct: 2   WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61

Query: 79  QTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           QTYMNLSG++   L  +YK+ P   +LV +DD+ LP   LRLR  G  G HNG++S++  
Sbjct: 62  QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G  EF RLRIGIG+PPGQMD   ++L +F       +   L    + +++++S+GLT 
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTA 180

Query: 198 SARHFNTI 205
           +   +N +
Sbjct: 181 AMNRYNPL 188

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
225435751	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.986	0.990	0.846	1e-102
449452694	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.995	0.995	0.821	1e-101
449493540	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.995	0.995	0.816	1e-100
449493552	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.995	0.995	0.811	1e-100
449452658	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.995	0.995	0.811	1e-100
358248836	218	uncharacterized protein LOC100808506 [Gl	0.995	0.995	0.797	5e-99
356512501	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.995	1.0	0.778	4e-96
255582564	217	peptidyl-tRNA hydrolase, putative [Ricin	0.995	1.0	0.764	5e-94
224052908	222	predicted protein [Populus trichocarpa]	0.986	0.968	0.772	5e-93
297808049	218	aminoacyl-tRNA hydrolase [Arabidopsis ly	0.995	0.995	0.751	1e-90

>gi|225435751|ref|XP_002283606.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Vitis vinifera] gi|297746470|emb|CBI16526.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/215 (84%), Positives = 192/215 (89%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++NRF RR FCTA  RPWLFVGLGNPGDKYKGTRHNVGFEMI+AFAESQGI M+TVHCKA
Sbjct: 1   MLNRFSRRLFCTASPRPWLFVGLGNPGDKYKGTRHNVGFEMINAFAESQGIPMDTVHCKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FGQGFV   PV LAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGVLRL H
Sbjct: 61  IFGQGFVDAVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVVVFHDDMSLPCGVLRLHH 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQ 181
            GGHG HNGLKSV+ +FRGNREF RLRIGIG+PPGQMDPKAFLLQKF+A ARERID ALQ
Sbjct: 121 KGGHGNHNGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFSATARERIDAALQ 180

Query: 182 EGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 216
           EGV VLKLL SKGLTESAR FNT QKYKHIR+QNM
Sbjct: 181 EGVGVLKLLSSKGLTESARCFNTEQKYKHIRVQNM 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452694|ref|XP_004144094.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/218 (82%), Positives = 193/218 (88%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 180
           HNGGHG HNGLKSV+ +FRGNREFARLRIGIGRPPGQMDPKAFLLQKFN  A+ERIDTAL
Sbjct: 121 HNGGHGYHNGLKSVIYHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQERIDTAL 180

Query: 181 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           QEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 181 QEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493540|ref|XP_004159339.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/218 (81%), Positives = 193/218 (88%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHNVGFEMID FAES GI MN VHCK
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHNVGFEMIDVFAESVGIPMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMTLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 180
           HNGGHG HNGLKSV+++FRGNREFARLRIGIGRPPGQMDPKAFLLQKFN  A+ERIDTAL
Sbjct: 121 HNGGHGYHNGLKSVISHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNNTAQERIDTAL 180

Query: 181 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           QEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 181 QEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493552|ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 192/218 (88%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 180
           HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD KAFLLQKFN  A+ERIDTAL
Sbjct: 121 HNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTAL 180

Query: 181 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           QEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 181 QEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452658|ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 192/218 (88%), Gaps = 1/218 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 180
           HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD KAFLLQKFN  A+ERIDTAL
Sbjct: 121 HNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSKAFLLQKFNNTAQERIDTAL 180

Query: 181 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           QEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 181 QEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248836|ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycine max] gi|255645293|gb|ACU23143.1| unknown [Glycine max]

 Score =  365 bits (938), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 173/217 (79%), Positives = 189/217 (87%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           +++R  RR FCT   RPWLFVGLGNPGDK+KGTRHNVGFEMIDAFAESQGI M+TVH KA
Sbjct: 1   MLHRLSRRCFCTFTPRPWLFVGLGNPGDKFKGTRHNVGFEMIDAFAESQGIPMDTVHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FG+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  IFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLHD 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQ 181
            GGHG H GLKSV+ NFRGNREF RLRIGIG PPGQMDPKAFLLQKFN  AR+RID ALQ
Sbjct: 121 KGGHGSHKGLKSVIYNFRGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEALQ 180

Query: 182 EGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           EG++ LKLLLSKGLTESA+ FN  QKYKH+R+QN+P 
Sbjct: 181 EGIDALKLLLSKGLTESAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512501|ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Glycine max]

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 186/217 (85%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++NR  RR FCT   RPWLFVGLGNPG+K+KGTRHNVGFEMIDAFAESQGI M+TVH KA
Sbjct: 1   MLNRLNRRFFCTVAPRPWLFVGLGNPGEKFKGTRHNVGFEMIDAFAESQGIPMDTVHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
             G+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  ISGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLHD 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQ 181
            GGHG H GLKSV+ +F+GNREF RLRIGIG PPGQMDPKAFLLQKFN  AR+RID ALQ
Sbjct: 121 KGGHGSHKGLKSVIYHFKGNREFPRLRIGIGSPPGQMDPKAFLLQKFNVTARQRIDEALQ 180

Query: 182 EGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           EGV+ LKLLLSKGL  SA+ FN  QKYKH+R+QN+P 
Sbjct: 181 EGVDALKLLLSKGLAVSAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582564|ref|XP_002532065.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223528269|gb|EEF30320.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 166/217 (76%), Positives = 185/217 (85%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++N+  RR FCT  +RPWL VGLGNPGDKYKGTRHNVGFEMIDAFA+   I M+ +H KA
Sbjct: 1   MLNKVCRRCFCTVASRPWLIVGLGNPGDKYKGTRHNVGFEMIDAFAQLLQIPMDKLHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FG+GFVG+A VLLAKPQTYMNLSGES GPLAAYYKLPLNRV+V HDDM LPCGVLRL+ 
Sbjct: 61  IFGEGFVGEASVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVLHDDMDLPCGVLRLQP 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQ 181
            GGHG HNGLKSV+++FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA A++RIDTA+ 
Sbjct: 121 KGGHGSHNGLKSVIHHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNATAQKRIDTAIP 180

Query: 182 EGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           EG   LK +L KGLTE+AR FN  QKYKHIRLQ MP 
Sbjct: 181 EGAAALKSILFKGLTETARCFNQEQKYKHIRLQTMPT 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052908|ref|XP_002297632.1| predicted protein [Populus trichocarpa] gi|222844890|gb|EEE82437.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 170/220 (77%), Positives = 185/220 (84%), Gaps = 5/220 (2%)

Query: 2   LINRFLRRGFCTAVA-----RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT 56
           ++NR  RR FCTA A      PWLFVGLGNPG+K+KGTRHNVGFEMIDAFA S GISMN 
Sbjct: 1   MLNRVSRRCFCTAAAAPTTLSPWLFVGLGNPGEKFKGTRHNVGFEMIDAFAGSLGISMNI 60

Query: 57  VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 116
             CKA FG+GFVGDAPVLLAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGV
Sbjct: 61  PLCKALFGEGFVGDAPVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVFHDDMELPCGV 120

Query: 117 LRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERI 176
           LRL+  GGHG H GLKSV+N+FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNA ARERI
Sbjct: 121 LRLQEKGGHGCHRGLKSVINHFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNATARERI 180

Query: 177 DTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 216
           D AL EGV  L+ +L +GLT +AR FN  QKYK+IR + M
Sbjct: 181 DAALPEGVVALRCILFEGLTRTARWFNQEQKYKYIRSETM 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808049|ref|XP_002871908.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata] gi|297317745|gb|EFH48167.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 163/217 (75%), Positives = 181/217 (83%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           +++   RR +CT+V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ KA
Sbjct: 1   MLSMLSRRCYCTSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
             GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+ 
Sbjct: 61  IMGQGFVDDLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQE 120

Query: 122 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQ 181
            GGHG HNGLKSVMN+FRGNREFARLRIGIG PPGQMDPKAFLLQKF+  ARER+D AL 
Sbjct: 121 KGGHGCHNGLKSVMNHFRGNREFARLRIGIGNPPGQMDPKAFLLQKFSVPARERMDKALA 180

Query: 182 EGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 218
           EGV+ LKL+LSK   ES R FN  QKYKH+R   + A
Sbjct: 181 EGVDALKLVLSKDFGESWRLFNVEQKYKHLRQHTIIA 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.967	0.963	0.707	1.9e-76
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.880	0.8	0.531	1e-52
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.857	0.649	0.524	3.5e-52
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.880	0.768	0.541	1.5e-51
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.839	0.978	0.372	1.6e-29
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.844	0.973	0.367	2.4e-28
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.844	0.989	0.367	3.9e-28
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.844	0.963	0.370	8.2e-28
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.825	0.932	0.376	1.2e-24
TIGR_CMR|VC_2184	196	VC_2184 "peptidyl-tRNA hydrola	0.853	0.948	0.322	3.8e-23

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 150/212 (70%), Positives = 169/212 (79%)

Query:     2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
             +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct:     1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query:    61 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXX 120
             A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGV    
Sbjct:    61 AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

Query:   121 XXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 180
                        KSVMN+FRGNREFARLRIGIG+PPGQMDPKAFLLQKF+  ARER+D AL
Sbjct:   121 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKAL 180

Query:   181 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 212
              EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct:   181 AEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 102/192 (53%), Positives = 130/192 (67%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAK
Sbjct:    45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
             PQTYMN SGES G LA++Y++PL  +L+ +D+M LP GV               KSVM +
Sbjct:   105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query:   138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
               G R F RL IGIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+  G  +
Sbjct:   165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224

Query:   198 SARHFNTIQKYK 209
                 FN +QKYK
Sbjct:   225 GISRFNLVQKYK 236

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 98/187 (52%), Positives = 136/187 (72%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct:    94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
             PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G                +S+++ 
Sbjct:   154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query:   138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
              +G+R+F RLRIGIGRPPG+MD   F+L++FN   +E +D   Q G+E +++LL +G  +
Sbjct:   214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query:   198 SARHFNT 204
             SA   NT
Sbjct:   274 SATFVNT 280

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 104/192 (54%), Positives = 129/192 (67%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL K
Sbjct:    55 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 114

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
             PQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GV               K+V  +
Sbjct:   115 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 174

Query:   138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
               G R + RL IGIG PPG MD KAFLLQKF+ + R+++D  L++GVE +K L+ +G ++
Sbjct:   175 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 234

Query:   198 SARHFNTIQKYK 209
             S   FN  QKYK
Sbjct:   235 SISRFNLGQKYK 246

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 69/185 (37%), Positives = 104/185 (56%)

Query:    19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
             ++  GLGNPG +Y+ TRHN GF ++D  A+  GI +     K+  G+G +    VLL KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:    79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
             QTYMNLSG +     ++YKLPL+R++V +DD+ LP G                 S+++  
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121

Query:   139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 198
              G+ E  RL+IGIGRP    D K ++LQ F    RE ++  L+   E + + L++G  ++
Sbjct:   122 -GSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKA 179

Query:   199 ARHFN 203
                FN
Sbjct:   180 MTDFN 184

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 69/188 (36%), Positives = 99/188 (52%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G + D  ++LAKPQ
Sbjct:     3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFR 139
             TYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  
Sbjct:    63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI- 121

Query:   140 GNREFARLRIGIGRPPGQMDPKAFL---LQKFNAIARERIDTALQEGVEVLKLLLSKGLT 196
             G +EF RL+IGIG+P  + +    +   L  F    RE +D A+    E L  LL+ GL 
Sbjct:   122 GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLD 181

Query:   197 ESARHFNT 204
              ++  FN+
Sbjct:   182 TASNRFNS 189

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 68/185 (36%), Positives = 101/185 (54%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP 
Sbjct:     3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFR 139
             TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  
Sbjct:    63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL- 121

Query:   140 GNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 199
             G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +  
Sbjct:   122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181

Query:   200 RHFNT 204
               FN+
Sbjct:   182 NTFNS 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 70/189 (37%), Positives = 100/189 (52%)

Query:    15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
             +A P L VGLGNPG  Y  TRHN+GF + D  A   G      H +  A    G      
Sbjct:     1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKA-HKRSGAEVATGRSAGRS 59

Query:    73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
             ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct:    60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119

Query:   133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 192
             SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ 
Sbjct:   120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178

Query:   193 KGLTESARH 201
             +G+ E A++
Sbjct:   179 QGM-EPAQN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 70/186 (37%), Positives = 98/186 (52%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L VGLGNPG KY  TRHN GF ++D  A + G S+        FG+G      +LL KPQ
Sbjct:     5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQ 64

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFR 139
             TYMNLSG S      ++KLPL   +V HDD+ +P G                +S++    
Sbjct:    65 TYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQEL- 123

Query:   140 GNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA-LQEG-VEVLKLLLSKGLTE 197
             G   F R+R+GIGRP    D   ++L  F+    E  D A L +G +++L+ LL+ GL +
Sbjct:   124 GGAGFVRVRVGIGRPV-HGDVVNYVLTNFSQ--DEMADLAHLLDGTLDLLESLLTAGLPK 180

Query:   198 SARHFN 203
             +   +N
Sbjct:   181 TMSLYN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2184 VC_2184 "peptidyl-tRNA hydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 61/189 (32%), Positives = 98/189 (51%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
             L VGL NPG +Y  TRHN G  +++  A    +++ N        G+  +    + +  P
Sbjct:     7 LLVGLANPGPEYAKTRHNAGAWVVEELARIHNVTLKNEPKFFGLTGRLLINSQELRVLIP 66

Query:    79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
              T+MNLSG++   LA +Y++    ++V HD++ LP GV               K  ++  
Sbjct:    67 TTFMNLSGKAIAALANFYQIKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISKL 126

Query:   139 RGNREFARLRIGIGRPPGQMDPKA-FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
               N+EF RLR+GIG P G  D  A ++L K  A  +E +D A+ E V  L++L+  GLT+
Sbjct:   127 GNNKEFYRLRLGIGHP-GHKDKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLTK 185

Query:   198 SARHFNTIQ 206
             +    +T +
Sbjct:   186 AQNRLHTFK 194

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4J0Q6	PTH_DESRM	3, ., 1, ., 1, ., 2, 9	0.4530	0.8027	0.8495	yes	no
Q63HI2	PTH_BACCZ	3, ., 1, ., 1, ., 2, 9	0.4216	0.8440	0.9892	yes	no
Q6NLS8	PTHM_ARATH	3, ., 1, ., 1, ., 2, 9	0.7594	0.9678	0.9634	yes	no
Q2J5Z1	PTH_FRASC	3, ., 1, ., 1, ., 2, 9	0.3874	0.8440	0.9340	yes	no
B8G3X3	PTH_CHLAD	3, ., 1, ., 1, ., 2, 9	0.4095	0.8532	0.9893	yes	no
A7GJD4	PTH_CLOBL	3, ., 1, ., 1, ., 2, 9	0.3829	0.8486	0.9788	yes	no
C0ZHD7	PTH_BREBN	3, ., 1, ., 1, ., 2, 9	0.3936	0.8577	0.9894	yes	no
A4T6N5	PTH_MYCGI	3, ., 1, ., 1, ., 2, 9	0.4111	0.8715	0.9895	yes	no
Q6MJR3	PTH_BDEBA	3, ., 1, ., 1, ., 2, 9	0.4064	0.8486	0.9893	yes	no
B9LE93	PTH_CHLSY	3, ., 1, ., 1, ., 2, 9	0.3989	0.8532	0.9893	yes	no
A1TEG1	PTH_MYCVP	3, ., 1, ., 1, ., 2, 9	0.4234	0.8669	0.9843	yes	no
B2TI10	PTH_CLOBB	3, ., 1, ., 1, ., 2, 9	0.3626	0.8715	0.9947	yes	no
Q0RCD6	PTH_FRAAA	3, ., 1, ., 1, ., 2, 9	0.3776	0.8577	0.9492	yes	no
B1KTE2	PTH_CLOBM	3, ., 1, ., 1, ., 2, 9	0.3829	0.8486	0.9788	yes	no
Q0TMG7	PTH_CLOP1	3, ., 1, ., 1, ., 2, 9	0.4032	0.8394	0.9734	yes	no
Q3Z8W2	PTH_DEHE1	3, ., 1, ., 1, ., 2, 9	0.4148	0.8440	0.9735	yes	no
B9IZD4	PTH_BACCQ	3, ., 1, ., 1, ., 2, 9	0.4216	0.8440	0.9892	yes	no
Q9F8Q3	PTH_CARHZ	3, ., 1, ., 1, ., 2, 9	0.4162	0.8394	0.9786	yes	no
Q65PG8	PTH_BACLD	3, ., 1, ., 1, ., 2, 9	0.4239	0.8394	0.9734	yes	no
Q1B425	PTH_MYCSS	3, ., 1, ., 1, ., 2, 9	0.4207	0.8211	0.9322	yes	no
A7FPJ7	PTH_CLOB1	3, ., 1, ., 1, ., 2, 9	0.3829	0.8486	0.9788	yes	no
A1UL23	PTH_MYCSK	3, ., 1, ., 1, ., 2, 9	0.4207	0.8211	0.9322	yes	no
C3KW96	PTH_CLOB6	3, ., 1, ., 1, ., 2, 9	0.3829	0.8486	0.9788	yes	no
A8F920	PTH_BACP2	3, ., 1, ., 1, ., 2, 9	0.4644	0.8348	0.9680	yes	no
P37470	PTH_BACSU	3, ., 1, ., 1, ., 2, 9	0.4347	0.8394	0.9734	yes	no
B1IGZ7	PTH_CLOBK	3, ., 1, ., 1, ., 2, 9	0.3882	0.8486	0.9788	yes	no
A9WBS1	PTH_CHLAA	3, ., 1, ., 1, ., 2, 9	0.3989	0.8532	0.9893	yes	no
A9KR32	PTH_CLOPH	3, ., 1, ., 1, ., 2, 9	0.3945	0.8440	0.9633	yes	no
Q181A2	PTH_CLOD6	3, ., 1, ., 1, ., 2, 9	0.4	0.8440	0.9892	yes	no
Q8XHJ8	PTH_CLOPE	3, ., 1, ., 1, ., 2, 9	0.4032	0.8394	0.9734	yes	no
C1FNE6	PTH_CLOBJ	3, ., 1, ., 1, ., 2, 9	0.3829	0.8486	0.9788	yes	no
A5I7R5	PTH_CLOBH	3, ., 1, ., 1, ., 2, 9	0.3829	0.8486	0.9788	yes	no
A7GJW3	PTH_BACCN	3, ., 1, ., 1, ., 2, 9	0.4378	0.8440	0.9892	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.5833	0.8807	0.7413	yes	no
Q47SW2	PTH_THEFY	3, ., 1, ., 1, ., 2, 9	0.4333	0.8211	0.8403	yes	no
B2UXS9	PTH_CLOBA	3, ., 1, ., 1, ., 2, 9	0.3626	0.8715	0.9947	yes	no
Q6HPW6	PTH_BACHK	3, ., 1, ., 1, ., 2, 9	0.4216	0.8440	0.9892	yes	no
A0PXL3	PTH_CLONN	3, ., 1, ., 1, ., 2, 9	0.4054	0.8394	0.9734	yes	no
Q5L3U7	PTH_GEOKA	3, ., 1, ., 1, ., 2, 9	0.4130	0.8394	0.9838	yes	no
Q899I4	PTH_CLOTE	3, ., 1, ., 1, ., 2, 9	0.4032	0.8394	0.9734	yes	no
Q81VY9	PTH_BACAN	3, ., 1, ., 1, ., 2, 9	0.4216	0.8440	0.9892	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.979
3rd Layer	3.1.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-115
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	5e-81
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	5e-77
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	8e-76
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	2e-72
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	4e-59

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  326 bits (837), Expect = e-115
 Identities = 124/191 (64%), Positives = 152/191 (79%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
            PWL  GLGNPG+KYKGTRHNVGFEM+D  AE++GI+MNT+  K+  G G +GD PVLLA
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLA 60

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KPQTYMN SGES GPLAAYYK+PL  +LV +DDM LP GVLRL+  GGHG HNGL+SV+ 
Sbjct: 61  KPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIE 120

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 196
           +  G+REF RL IGIG PPG+MDP+AFLLQKF++  RE+IDTAL++GV+ ++ L+ KG  
Sbjct: 121 HLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGFN 180

Query: 197 ESARHFNTIQK 207
            SA  FN +QK
Sbjct: 181 GSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  238 bits (611), Expect = 5e-81
 Identities = 88/172 (51%), Positives = 117/172 (68%), Gaps = 1/172 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
           L VGLGNPG KY+ TRHNVGF ++DA AE  G+S      K   G+G +G   VLL KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 80  TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR 139
           TYMNLSGE+   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++ +  
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL- 119

Query: 140 GNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 191
           G  +F RLRIGIGRPP +MD   ++L KF+   RE ++ A+++  + L+ +L
Sbjct: 120 GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  229 bits (586), Expect = 5e-77
 Identities = 85/179 (47%), Positives = 115/179 (64%), Gaps = 2/179 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG KY+ TRHNVGF +ID  AE  G+S+      K    +G +    V+L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
           QTYMNLSGE+   +A +YK+P   +LV HDD+ LP G LRL+  GG GGHNGLKS++ + 
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL 120

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
            G  +F RLRIGIGRPP + D   ++L KF+    E +D A+++  + L+ L+  G  +
Sbjct: 121 -GTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDK 178

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  226 bits (578), Expect = 8e-76
 Identities = 81/188 (43%), Positives = 116/188 (61%), Gaps = 3/188 (1%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 76
             L VGLGNPG +Y  TRHN+GF ++D  A   G S+      K    +G +    V+L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KPQTYMNLSG++   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNGLKS++ 
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIA 121

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 196
           +  G ++F RLRIGIGRP  +     ++L KF+   +E +D A+ +  + ++LLL  G  
Sbjct: 122 HL-GTQDFWRLRIGIGRPDKK-KVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFE 179

Query: 197 ESARHFNT 204
           ++   FN+
Sbjct: 180 KAMNKFNS 187

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  217 bits (555), Expect = 2e-72
 Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 2/188 (1%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIS-MNTVHCKATFGQGFVGDAPVLLA 76
             L VGLGNPG KY  TRHNVGF ++D  A    +S            +G +    V+L 
Sbjct: 2   MKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILL 61

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
           KP TYMNLSG++ G LA++YK+    +LV HD++ LP G +RL+  GG GGHNGLKS++ 
Sbjct: 62  KPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIA 121

Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 196
           +  G   F RLRIGIGRP    D   ++L KF+   RE +D A+ +  + L+LLL     
Sbjct: 122 HL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGDFE 180

Query: 197 ESARHFNT 204
           ++    N 
Sbjct: 181 KAMNKLNA 188

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  184 bits (468), Expect = 4e-59
 Identities = 79/176 (44%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK-ATFGQGFVGDAPVLLAKP 78
           L VGLGNPG KY GTRHN GF ++D  A   G+S+ T         +G +    V+L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
            TYMNLSGE+   LA++Y++    +LV HD++ LP G +RL+  GG GGHNGLKS++++ 
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL 122

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
            G   F RLRIGIG P G      F+L KF       ++ AL + VE L++  S+G
Sbjct: 123 -GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEG 177

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0
TIGR00130	153	frhD coenzyme F420-reducing hydrogenase delta subu	90.96
PRK11544	156	hycI hydrogenase 3 maturation protease; Provisiona	88.85
PRK12362	318	germination protease; Provisional	88.48
TIGR00072	145	hydrog_prot hydrogenase maturation protease. HycI	88.28
COG0680	160	HyaD Ni,Fe-hydrogenase maturation factor [Energy p	85.78
TIGR00142	146	hycI hydrogenase maturation protease HycI. Hydroge	83.68
cd06070	140	H2MP_like-2 Putative [NiFe] hydrogenase-specific C	82.76

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-78  Score=513.83  Aligned_cols=188  Identities=43%  Similarity=0.765  Sum_probs=181.9

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCC-CccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~-~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   95 (218)
                      .|+|||||||||++|+.||||||||++|.||++++.++ +.++|.+.++++.+.+++++|+||+||||+||++|.++++|
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            37899999999999999999999999999999999998 55789999999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      |++++++++|||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||..+++|++|||++|+++|++.
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~  159 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL  159 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 699999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      +++++++|++|++.++++++++|||+||+.
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~mn~~~~~  189 (190)
T COG0193         160 LDKAIDKAADALELLLEGDFEKAMNKLNAL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            999999999999999999999999999974

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=3.2e-78  Score=513.83  Aligned_cols=190  Identities=65%  Similarity=1.131  Sum_probs=181.6

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   96 (218)
                      .|+|||||||||++|++|||||||+++|.||+++++++++.++.+.+++..+.+++++|+||+||||+||+||+++++||
T Consensus         1 ~~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~y   80 (191)
T cd02406           1 TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYY   80 (191)
T ss_pred             CcEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHh
Confidence            47899999999999999999999999999999999988767888999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHH
Q 027817           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERI  176 (218)
Q Consensus        97 ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~l  176 (218)
                      ++++++++|||||||||+|++|+|.+||+|||||||||+++|+||++|+|||||||||+.+.++++|||++|+++|++.+
T Consensus        81 ki~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l  160 (191)
T cd02406          81 KVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQI  160 (191)
T ss_pred             CCCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999965789999999999997667899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHhhhchh
Q 027817          177 DTALQEGVEVLKLLLSKGLTESARHFNTIQ  206 (218)
Q Consensus       177 ~~~i~~a~~~~~~~i~~~~~~amn~~n~~~  206 (218)
                      +++++.|+++++.|+.+++++|||+||+.+
T Consensus       161 ~~~~~~a~~~~~~~~~~~~~~~~n~~n~~~  190 (191)
T cd02406         161 DTALEQGVDAVRTLVLKGFNGSAERFNLVQ  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            999999999999999999999999999654

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=4.2e-76  Score=499.90  Aligned_cols=186  Identities=44%  Similarity=0.771  Sum_probs=178.0

Q ss_pred             CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (218)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   96 (218)
                      |+|||||||||++|++|||||||+++|+||++++.++.+ .++.+.+++..+.+++++|+||+||||+||++|+++++||
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            689999999999999999999999999999999998763 5677888888899999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHH
Q 027817           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERI  176 (218)
Q Consensus        97 ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~l  176 (218)
                      ++++++++|||||||||+|++|+|++||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.+
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l  159 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL  159 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 6899999999999997767899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC-HHHHHHhhhc
Q 027817          177 DTALQEGVEVLKLLLSKG-LTESARHFNT  204 (218)
Q Consensus       177 ~~~i~~a~~~~~~~i~~~-~~~amn~~n~  204 (218)
                      +++++.++++++.|++++ +++|||+||+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~n~~n~  188 (188)
T TIGR00447       160 EKALDKAVEALEMSFSEGAFLKAMNRFNS  188 (188)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence            999999999999999999 9999999985

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=1.8e-74  Score=490.27  Aligned_cols=187  Identities=43%  Similarity=0.794  Sum_probs=177.7

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   95 (218)
                      .|||||||||||++|++|||||||+++|.||++++..+. ..++.+.+++..+.+++++|+||+||||+||++|++++++
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            378999999999999999999999999999999887665 4567789999999889999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      |++++++++|||||+|+|+|++|+|.+||+|||||||||+++| ||++|+|||||||||+ ..++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~  158 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL  158 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 6889999999999997 5679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      ++++++.|+++++.|++++++++||++|+.
T Consensus       159 l~~~~~~a~~~v~~~~~~~~~~~~~~~n~~  188 (189)
T PRK05426        159 LDKAIDKAADAIELLLEGGFEKAMNKFNSK  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999964

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=2.3e-73  Score=481.10  Aligned_cols=183  Identities=44%  Similarity=0.844  Sum_probs=163.1

Q ss_pred             EEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccc-cceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCC
Q 027817           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   98 (218)
Q Consensus        20 LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k-~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki   98 (218)
                      |||||||||++|++|||||||+++|+||++++.++.+.+ +.+.++...+.+.+++|+||+||||+||++|++++++|++
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999999886654 7788888889999999999999999999999999999999


Q ss_pred             CCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHHHH
Q 027817           99 PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDT  178 (218)
Q Consensus        99 ~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~l~~  178 (218)
                      ++++++|||||+|+|+|++|+|.+||+|||||||||+++| +|++|+|||||||||++..++++|||++|+++|++.+++
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~  159 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDK  159 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 689999999999999877789999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHhhh
Q 027817          179 ALQEGVEVLKLLLSKGLTESARHFN  203 (218)
Q Consensus       179 ~i~~a~~~~~~~i~~~~~~amn~~n  203 (218)
                      +++.|+++++.|+++++++|||+||
T Consensus       160 ~~~~a~~~l~~~i~~~~~~~mn~~n  184 (184)
T PF01195_consen  160 VIPQAAEALEQIIEGGFEKAMNKFN  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHhC
Confidence            9999999999999999999999998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=6.5e-73  Score=474.15  Aligned_cols=171  Identities=51%  Similarity=0.938  Sum_probs=164.3

Q ss_pred             EEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 027817           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLP   99 (218)
Q Consensus        20 LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~   99 (218)
                      |||||||||++|++|||||||+++|+||++++.++.+.++.+.+++..+.+++++|+||+||||+||++|+++++||+++
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999988777778899999999999999999999999999999999999999


Q ss_pred             CCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHHHHH
Q 027817          100 LNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTA  179 (218)
Q Consensus       100 ~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~l~~~  179 (218)
                      +++++|||||||||+|++|+|++||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.++++
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~  159 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA  159 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 6899999999999998777999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027817          180 LQEGVEVLKLLL  191 (218)
Q Consensus       180 i~~a~~~~~~~i  191 (218)
                      ++.|+++++.|+
T Consensus       160 ~~~~~~~~~~~~  171 (171)
T cd00462         160 IEKAADALEDIL  171 (171)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.2e-56  Score=377.74  Aligned_cols=183  Identities=56%  Similarity=0.998  Sum_probs=163.6

Q ss_pred             CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 027817           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK   97 (218)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k   97 (218)
                      +|+|+||||||++|..|||||||.++|.||++++++..+.+.++..+-+.+++..+++++|++|||.||++|.+++..|+
T Consensus        39 ~wli~GLGNPg~~y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~  118 (224)
T KOG2255|consen   39 PWLIVGLGNPGSKYVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYK  118 (224)
T ss_pred             ceEEEecCCCcccccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhc
Confidence            58999999999999999999999999999999999876655566667778889999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH-HH
Q 027817           98 LPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE-RI  176 (218)
Q Consensus        98 i~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~-~l  176 (218)
                      ++.++++||||||++|+|++|+|++||++||||+||+++++.|...|+||+||||||++++|+.+|||++|++.|++ .|
T Consensus       119 i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~L  198 (224)
T KOG2255|consen  119 IPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKELL  198 (224)
T ss_pred             chheeEEEEeccccCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHHH
Confidence            99999999999999999999999999999999999999999877799999999999999999999999999999988 45


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHhhhc
Q 027817          177 DTALQEGVEVLKLLLSKGLTESARHFNT  204 (218)
Q Consensus       177 ~~~i~~a~~~~~~~i~~~~~~amn~~n~  204 (218)
                      +..++.    ++.++.+++..-.++||-
T Consensus       199 et~l~~----~~~lil~~l~~~is~~~l  222 (224)
T KOG2255|consen  199 ETLLEH----VKTLILQGLQQSISRFNL  222 (224)
T ss_pred             HHHHhh----hHHHHHHHHHHhcccCcC
Confidence            554444    444555566666666663

>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit)

Probab=90.96  E-value=7.5  Score=31.61  Aligned_cols=133  Identities=17%  Similarity=0.147  Sum_probs=69.9

Q ss_pred             CeEEEEecCCCCCcCcCcchHHHHHHHHHHHH-cCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAES-QGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (218)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~-~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   96 (218)
                      +.+|+|+|||-.    .===+|..++++|+++ +..+                 ..+.+      ++........+..+.
T Consensus         4 ~ilVlGiGN~l~----gDDGvG~~v~~~L~~~~~~~~-----------------~~v~v------id~gt~~~~~l~~~~   56 (153)
T TIGR00130         4 EILVVGCGNILF----GDDGFGPAVIEYLKENGVEKP-----------------DNVCL------IDAGTGAPHFVFTLI   56 (153)
T ss_pred             eEEEEEeCcccc----ccCcHhHHHHHHHHHhCCCCC-----------------CCeEE------EECCCcHHHHHHHHh
Confidence            468999999953    2235999999999863 2111                 01111      221111111111221


Q ss_pred             CCCCCcEEEEeec--CCCCCceEEEec------CCC-CCCCCchhhHHHhhcCCCCccEEEE-eecCCCCCCCccccccC
Q 027817           97 KLPLNRVLVFHDD--MGLPCGVLRLRH------NGG-HGGHNGLKSVMNNFRGNREFARLRI-GIGRPPGQMDPKAFLLQ  166 (218)
Q Consensus        97 ki~~~~ilVihDD--ldlp~G~vrlk~------gGs-~gGHNGLkSIi~~L~gt~~f~RlrI-GIGrP~~~~~v~~yVLs  166 (218)
                      .+...+.+||-|=  .+.++|+++.-.      ..+ +..+-|+..+++.+. ..  .++.| ||- |.. -+..+|= -
T Consensus        57 ~~~~~d~vIivDA~~~~~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~-~~--~~~~iiGi~-p~~-~~~~~~~-~  130 (153)
T TIGR00130        57 PQSKWKKIIVVDIADFGAEPGTLRVLNVDELPNGRYMDAHGWSLAYPLHDLE-ER--IDIRVVGCQ-PKY-VSQPDVD-I  130 (153)
T ss_pred             hhcCCCEEEEEEccCCCcCCCEEEEEchHHcCCCCCCCCccCCHHHHHHHhc-CC--CCEEEEEEE-EeE-ecCCCCC-C
Confidence            2334566777785  578999998742      212 344459999998773 22  45555 553 321 1111222 2


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 027817          167 KFNAIARERIDTALQEG  183 (218)
Q Consensus       167 ~f~~~E~~~l~~~i~~a  183 (218)
                      .+|++=++.++++++.+
T Consensus       131 ~LS~~v~~a~~~~~~~i  147 (153)
T TIGR00130       131 GLTEEVNKAIPRAVEII  147 (153)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            56665555555444433

FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.

>PRK11544 hycI hydrogenase 3 maturation protease; Provisional

Probab=88.85  E-value=9.8  Score=31.18  Aligned_cols=134  Identities=16%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             eEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCC
Q 027817           19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   98 (218)
Q Consensus        19 ~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki   98 (218)
                      .+|+|+|||-..    ===+|..++++|++.. .  .                .+.++.-.|    .|.-+-.+++.+  
T Consensus         3 ~lVlGiGN~L~g----DDGvG~~v~~~L~~~~-~--~----------------~v~vid~gt----~~~~~~~~i~~~--   53 (156)
T PRK11544          3 DVVLTVGNSMMG----DDGAGPLLAEKLAAAP-K--G----------------GWVVIDGGS----APENDIVAIREL--   53 (156)
T ss_pred             EEEEEeCccccc----cCcHHHHHHHHHhccC-C--C----------------CeEEEECCC----CHHHHHHHHHhc--
Confidence            589999999643    3359999999997642 1  0                011121112    122221222211  


Q ss_pred             CCCcEEEEeec--CCCCCceEEEecCC------CCCCCC-chhhHHHhhcCCCCccEEEE-eecCCCCCCCccccccCcC
Q 027817           99 PLNRVLVFHDD--MGLPCGVLRLRHNG------GHGGHN-GLKSVMNNFRGNREFARLRI-GIGRPPGQMDPKAFLLQKF  168 (218)
Q Consensus        99 ~~~~ilVihDD--ldlp~G~vrlk~gG------s~gGHN-GLkSIi~~L~gt~~f~RlrI-GIGrP~~~~~v~~yVLs~f  168 (218)
                      .+ +.+||.|=  .+.++|+++.-...      +...|. ||..++..+.+  ..+++.+ ||= |.   ++ +| =...
T Consensus        54 ~~-d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~--~~p~v~iigI~-~~---~~-~~-g~~L  124 (156)
T PRK11544         54 RP-ERLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DVPEVIFLGIQ-PD---IV-GF-YYPM  124 (156)
T ss_pred             CC-CEEEEEECCccCcCCCEEEEEchhhcccccCCCCCcCCHHHHHHHHhc--CCCcEEEEEEE-ee---ec-cC-CCCC
Confidence            23 55566674  56799999873211      123444 88888888743  3345544 552 32   22 22 2355


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027817          169 NAIARERIDTALQEGVEVLKLLLSKG  194 (218)
Q Consensus       169 ~~~E~~~l~~~i~~a~~~~~~~i~~~  194 (218)
                      |++=++    .++++++.++.|..++
T Consensus       125 S~~v~~----av~~~~~~l~~~~~~~  146 (156)
T PRK11544        125 TQPVKD----AVETVYQRLEGWEGNG  146 (156)
T ss_pred             CHHHHH----HHHHHHHHHHHhhccC
Confidence            654444    4556666777776543

>PRK12362 germination protease; Provisional

Probab=88.48  E-value=14  Score=34.41  Aligned_cols=126  Identities=19%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             HHHHhccCCCCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECC-eeEEEEeC----CCc
Q 027817            7 LRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-APVLLAKP----QTY   81 (218)
Q Consensus         7 ~~~~~~~~~~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~-~~v~L~KP----~Ty   81 (218)
                      +++.+........|||||||.-    -|--..|..|++.|.-....       ..++++..-.+ ..|.-+-|    +|=
T Consensus        89 L~~ll~~~~~~~iLVvGLGN~~----vTpDaLGP~Vv~~l~vTrhl-------~~~~~~~~~~~~~pV~AiaPGVmg~TG  157 (318)
T PRK12362         89 LKKLINLDKEMTVLVVGLGNWN----VTPDALGPKVVSKLMVTRHL-------KEYAPEEIDEGIRPVCAIAPGVLGITG  157 (318)
T ss_pred             HHHHhCCCCCCcEEEEEcCCCC----cCccccchhhhhhhhhhhhh-------hhhcCchhcCCCCcceEecCCcccccc
Confidence            3444422345678999999964    59999999999988643111       01111111111 23444434    566


Q ss_pred             ccccchhHHHHHHHcCCCCCcEEEEeecCC----CCCc-eEEEecCC---CCCCCCchhhHH-HhhcCCCCccEEEEee
Q 027817           82 MNLSGESTGPLAAYYKLPLNRVLVFHDDMG----LPCG-VLRLRHNG---GHGGHNGLKSVM-NNFRGNREFARLRIGI  151 (218)
Q Consensus        82 MN~SG~aV~~~~~~~ki~~~~ilVihDDld----lp~G-~vrlk~gG---s~gGHNGLkSIi-~~L~gt~~f~RlrIGI  151 (218)
                      ||. ++-++.+.+.++   .+++|.-|-+-    --+| +|.+...|   |+|=.|==+.|. +.| |   .+=+.|||
T Consensus       158 iet-~Eii~gIv~k~k---pd~IIAIDALaar~~~Rl~~tIQisdtGI~PGSGVGN~R~~l~~etL-G---VPVIAIGV  228 (318)
T PRK12362        158 IET-AEIIKGVVEKIK---PDLVIAIDALAARSVERVNTTIQISDTGISPGSGVGNKRMGINEETL-G---VPVIAIGV  228 (318)
T ss_pred             hhH-HHHHHHHHHhcC---CCEEEEEeccccCCHHHccCeEEECCCCCCCCccCCCcccccCHHHc-C---CCEEEEcC
Confidence            766 455667766654   46777778775    2467 88888766   343334333333 344 3   56666666

>TIGR00072 hydrog_prot hydrogenase maturation protease

Probab=88.28  E-value=12  Score=30.04  Aligned_cols=127  Identities=17%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             EEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 027817           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLP   99 (218)
Q Consensus        20 LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~   99 (218)
                      ||+|+|||-..    ===+|..++++|++++....                 .+-+      ++. |.....++.+..  
T Consensus         1 lViGiGN~l~~----DDg~G~~v~~~L~~~~~~~~-----------------~v~~------id~-g~~~~~l~~~l~--   50 (145)
T TIGR00072         1 LVLGIGNILRG----DDGFGPRVAERLEERYEFPP-----------------GVEV------LDG-GTLGLELLDAIE--   50 (145)
T ss_pred             CEEEECchhcc----cCcHHHHHHHHHHHhcCCCC-----------------CeEE------EEC-CCCHHHHHHHHh--
Confidence            58999999532    23599999999988653210                 0111      111 111123333332  


Q ss_pred             CCcEEEEeecC--CCCCceEEEec--------CCC-CCCCCchhhHHHhhcCCCCcc-EEEE-eecCCCCCCCccccccC
Q 027817          100 LNRVLVFHDDM--GLPCGVLRLRH--------NGG-HGGHNGLKSVMNNFRGNREFA-RLRI-GIGRPPGQMDPKAFLLQ  166 (218)
Q Consensus       100 ~~~ilVihDDl--dlp~G~vrlk~--------gGs-~gGHNGLkSIi~~L~gt~~f~-RlrI-GIGrP~~~~~v~~yVLs  166 (218)
                      ..+.+||.|=.  +.++|+++.-.        .++ +..+-|+..+++.+.-....+ ++.+ ||= |.   ++ +|- .
T Consensus        51 ~~d~viiVDA~~~g~~pG~v~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~~~~g~~p~~~~lvgi~-~~---~~-~~g-~  124 (145)
T TIGR00072        51 GADRVIVVDAVDSGAEPGTVRRLPGEDLPAFLGGKLSTHQLGLSEVLALLELLGALPPEVVLLGIQ-PE---SL-EFG-L  124 (145)
T ss_pred             CCCEEEEEEccCCCcCCceEEEEchhhccccccCCCCcCcCCHHHHHHHHHHcCCCCCeEEEEEEE-ee---ec-ccC-C
Confidence            24566677765  55999988632        123 333448888887663112343 4444 552 21   22 222 3


Q ss_pred             cCCHHHHHHHHHHHHH
Q 027817          167 KFNAIARERIDTALQE  182 (218)
Q Consensus       167 ~f~~~E~~~l~~~i~~  182 (218)
                      .+|++=++.++++++.
T Consensus       125 ~LS~~v~~~~~~~~~~  140 (145)
T TIGR00072       125 GLSPEVAAAVPAAVEL  140 (145)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6666655555544443

HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.

>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]

Probab=85.78  E-value=19  Score=29.94  Aligned_cols=140  Identities=17%  Similarity=0.168  Sum_probs=81.1

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCC-cccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQT-YMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~T-yMN~SG~aV~~~~~~   95 (218)
                      .+.+|+|+|||=.    .-==+|-.++++|.+++...-                 ++-++.--| -+|+.+         
T Consensus         2 ~~ilIlG~GN~L~----~DDG~Gv~vae~L~~~~~~~~-----------------~v~vid~Gt~~~~l~~---------   51 (160)
T COG0680           2 MRILILGVGNILM----GDDGFGVRVAEKLKKRYKPPE-----------------NVEVIDGGTAGPNLLG---------   51 (160)
T ss_pred             CeEEEEeeCCccc----ccCcccHHHHHHHHHhcCCCC-----------------CeEEEEcCCCcHHHHH---------
Confidence            3578999999953    334689999999988753211                 111222111 133322         


Q ss_pred             cCCCCCcEEEEeecCCC--CCceEEEec------CCCCC---CCC-chhhHHHhhcCCCCccEEEEeecCCCCCCCcccc
Q 027817           96 YKLPLNRVLVFHDDMGL--PCGVLRLRH------NGGHG---GHN-GLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAF  163 (218)
Q Consensus        96 ~ki~~~~ilVihDDldl--p~G~vrlk~------gGs~g---GHN-GLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~y  163 (218)
                       .+...+-++|.|=++.  .+|++++-.      ...+.   .|+ ++..+++.+.-..++...-+|+.-|..  ...+ 
T Consensus        52 -~l~~~d~vIIVDav~~g~epG~v~~i~~e~i~~~~~~~~~s~H~~~~~~~L~~~~~~~~~~~~~~~~~v~~~--~~~~-  127 (160)
T COG0680          52 -LLAGYDPVIIVDAVLFGLEPGEVRIIDPEEIPAYSSASKDSAHELPLSELLALLKELGGLPVLILGVQVPIV--SLPE-  127 (160)
T ss_pred             -HhcCCCcEEEEEeeecCCCCceEEEechhhcccccccCCCccccCCHHHHHHHHHHhcCCceEEEEEeecee--cccc-
Confidence             1233344778886555  599998643      23343   565 677777777433456778888886542  2112 


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHH
Q 027817          164 LLQKFNAIARERIDTALQEGVEVLKLL  190 (218)
Q Consensus       164 VLs~f~~~E~~~l~~~i~~a~~~~~~~  190 (218)
                      +...+|++=++.++.+++.+.+.+..+
T Consensus       128 ~~~~lS~ev~~a~~~av~~i~~~l~~~  154 (160)
T COG0680         128 FGGGLSPEVEEAVDKAVERILEELREW  154 (160)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHhh
Confidence            225566666666666666666655543

>TIGR00142 hycI hydrogenase maturation protease HycI

Probab=83.68  E-value=21  Score=28.67  Aligned_cols=128  Identities=16%  Similarity=0.168  Sum_probs=68.1

Q ss_pred             EEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 027817           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLP   99 (218)
Q Consensus        20 LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~   99 (218)
                      +|+|+|||-..    ===+|..++++|.+.+...                  .+.++.-.|    .|.-.-.+.+.+  .
T Consensus         2 lVlGiGN~l~~----DDG~G~~v~~~L~~~~~~~------------------~v~v~d~gt----~~~~~~~~~~~~--~   53 (146)
T TIGR00142         2 VLLCVGNELMG----DDGAGPYLAEKCAAAPKEE------------------NWVVINAGT----VPENFTVAIREL--R   53 (146)
T ss_pred             EEEEeCccccc----cCcHHHHHHHHHHhccCCC------------------CEEEEECCC----ChHHHHHHHHhc--C
Confidence            79999999643    2349999999998653210                  122222222    122111222222  2


Q ss_pred             CCcEEEEeecC--CCCCceEEEecC-----CCCCCCC-chhhHHHhhcCCCCccEEEE-eecCCCCCCCccccccCcCCH
Q 027817          100 LNRVLVFHDDM--GLPCGVLRLRHN-----GGHGGHN-GLKSVMNNFRGNREFARLRI-GIGRPPGQMDPKAFLLQKFNA  170 (218)
Q Consensus       100 ~~~ilVihDDl--dlp~G~vrlk~g-----Gs~gGHN-GLkSIi~~L~gt~~f~RlrI-GIGrP~~~~~v~~yVLs~f~~  170 (218)
                       .+.++|.|-.  +.++|+++.-..     .+..-|. |+..+++.+.+ .--.++.+ ||- |.   ++ +|- ...|+
T Consensus        54 -~d~viivDA~~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~ll~~~~~-~~~~~~~ligi~-~~---~~-~~g-~~LS~  125 (146)
T TIGR00142        54 -PTHILIVDATDMGLNPGEVRIIDDDIIEMYSMSTHNMPLSYLVDYLKE-DINGEIIFLGIQ-PD---IV-GFY-YPMSQ  125 (146)
T ss_pred             -CCEEEEEECcccCCCCCeEEEEChhhccccccCcCcCCHHHHHHHHHh-cCCCeEEEEEEe-ee---ee-ecC-CCCCH
Confidence             3556666764  569999887432     1223454 99998877732 21234554 553 32   23 333 46676


Q ss_pred             HHHHHHHHHHHHH
Q 027817          171 IARERIDTALQEG  183 (218)
Q Consensus       171 ~E~~~l~~~i~~a  183 (218)
                      +=++.++++++.+
T Consensus       126 ~v~~a~~~~~~~i  138 (146)
T TIGR00142       126 PVKDAVETLYQRL  138 (146)
T ss_pred             HHHHHHHHHHHHH
Confidence            6555555444433

Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.

>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease

Probab=82.76  E-value=23  Score=28.30  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             EEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcCCC
Q 027817           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLP   99 (218)
Q Consensus        20 LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ki~   99 (218)
                      ||+|+|||-..    ===+|+.++++|++ .+                     +-++.-       |.....++.++  .
T Consensus         1 lVlGiGN~l~~----DDg~G~~v~~~L~~-~~---------------------v~vi~~-------g~~~~~ll~~i--~   45 (140)
T cd06070           1 LIIGVGNRLYG----DDGFGSCLAEALEQ-CG---------------------APVFDG-------GLDGFGLLSHL--E   45 (140)
T ss_pred             CEEEECchhcc----cCcHHHHHHHHHhh-CC---------------------CEEEEC-------CCcHHHHHHHH--c
Confidence            68999999532    23599999999976 11                     111111       22222344433  2


Q ss_pred             CCcEEEEeecCC--CCCceEEEecC---------CCCCCCC-chhhHHHhh
Q 027817          100 LNRVLVFHDDMG--LPCGVLRLRHN---------GGHGGHN-GLKSVMNNF  138 (218)
Q Consensus       100 ~~~ilVihDDld--lp~G~vrlk~g---------Gs~gGHN-GLkSIi~~L  138 (218)
                      ..+.+||.|=++  .++|.++++..         .+...|+ |+.++.+.+
T Consensus        46 ~~d~viiVDA~~~~~~pG~~~~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~   96 (140)
T cd06070          46 NYDIVIFIDVAVIDEDVGVFKITPEPASVAEQISFETDAHRLGPAHLLLLL   96 (140)
T ss_pred             CCCEEEEEEeecCCCCCeEEEEecCchhccccccCCCCCCcCCHHHHHHHH
Confidence            455666777654  68998888553         2224566 999987655

Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		2e-58
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		6e-57
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		1e-56
2lgj_A	191	Solution Structure Of Mspth Length = 191		1e-31
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		2e-30
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		7e-29
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		7e-29
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		2e-20
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		2e-20
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		4e-20
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		5e-20
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		2e-19
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		3e-19
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		3e-19
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		9e-16

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 136/196 (69%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVK 76
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + 
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 196
Query: 198 SARHFNTIQKYKHIRL 213
           S   FN +QKYK  R+
Sbjct: 197 STERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  216 bits (551), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 132/189 (69%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + 
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 196
Query: 198 SARHFNTIQ 206
           S   FN +Q
Sbjct: 197 STERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 132/190 (69%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ K
Sbjct: 5   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVK 64
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GV               ++V+ +
Sbjct: 65  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 124
Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + 
Sbjct: 125 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 184
Query: 198 SARHFNTIQK 207
           S   FN +QK
Sbjct: 185 STERFNLVQK 194

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/196 (38%), Positives = 110/196 (56%), Gaps = 7/196 (3%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G S   VH K  A    G +    
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTS 59
Query: 73  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
           V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  G                +
Sbjct: 60  VVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 192
           SV +   G + F R+RIG+GRPPG+ DP AF+L+ F A  R  + T +++  +  +LL++
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIA 178
Query: 193 KGLTESARHFNTIQKY 208
           +GL E A+  NT+  +
Sbjct: 179 QGL-EPAQ--NTVHAW 191

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G S   VH K  A    G +    
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTT 59
Query: 73  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 132
           V+LAKP+  MN SG   GPLA +Y +P  +++V HD++ +  G                +
Sbjct: 60  VVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLR 119
Query: 133 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 192
           SV +   G + F R+RIG+GRPPG+ DP AF+L+ F +  R  + T +++  +  +LL++
Sbjct: 120 SVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIA 178
Query: 193 KGLTESARHFNTIQKY 208
           +GL E A+  NT+  +
Sbjct: 179 QGL-EPAQ--NTVHAW 191

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 99/196 (50%), Gaps = 5/196 (2%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      +
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +S
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 193
           V+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ 179
Query: 194 GLTESARHFNTIQKYK 209
           G+  +    N +  +K
Sbjct: 180 GMEPAQ---NRVHAWK 192

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      +
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 133
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +S
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRS 120
Query: 134 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 193
           V+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +
Sbjct: 121 VVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQ 179
Query: 194 GL 195
           G+
Sbjct: 180 GM 181

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 7/191 (3%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 60
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K ++
Sbjct: 61  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 120
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
           +    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + GL
Sbjct: 121 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 180
Query: 196 TESARHFNTIQ 206
           T++    +  +
Sbjct: 181 TKATNRLHAFK 191

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 7/191 (3%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 64
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K ++
Sbjct: 65  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 124
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
           +    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + GL
Sbjct: 125 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 184
Query: 196 TESARHFNTIQ 206
           T++    +  +
Sbjct: 185 TKATNRLHAFK 195

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 7/183 (3%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 81
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 135
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV               K ++
Sbjct: 82  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 141
Query: 136 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
           +    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + GL
Sbjct: 142 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 201
Query: 196 TES 198
           T++
Sbjct: 202 TKA 204

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG +Y  TRHN GF ++D  A   G ++ +       + +  +    V L +P
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEP 84
Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
           QTYMN SG+S   LA ++K+  N +LV HD++ LP G                K +  + 
Sbjct: 85  QTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL 144
Query: 139 RGNREFARLRIGIGRPPGQMDPKA----------FLLQKFNAIARERIDTALQEGVEVLK 188
             ++++ RLRIGIG P   +   A          F+L+      ++ ID A++  + V+ 
Sbjct: 145 -SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVMP 203
Query: 189 LLLSKGLTESA 199
            ++ KG TE A
Sbjct: 204 AVV-KGETERA 213

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 6/191 (3%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG +Y  TRHN GF  ++  A+  GI++ N        G+G +    V L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNF 138
            TYMN SG+S  P + +Y++    +L+ HD++ +  GV               + ++ + 
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 198
             N  F RLRIGIG P  +      +L K  +  +  +D A+   +  +KLL+   + ++
Sbjct: 126 GPN--FHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183
Query: 199 ARHFNTIQKYK 209
               N I  YK
Sbjct: 184 ---MNQINAYK 191

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
           L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  F  G VG        V 
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 67
Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + +
Sbjct: 68  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 127
Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
           +        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+  
Sbjct: 128 IAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGD 187
Query: 195 LTESARHFNT 204
            T + +  ++
Sbjct: 188 WTRAMQKLHS 197

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
           L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  F  G VG        V 
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYF--GLVGKFSHQGKDVR 61
Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 134
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + +
Sbjct: 62  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 121
Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
           +        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+  
Sbjct: 122 IAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGD 181
Query: 195 LTESARHFNT 204
            T + +  ++
Sbjct: 182 WTRAMQKLHS 191

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLLA 76
           + +GLGN G +Y+ TRHNVG   I   A+    S ++   ++C     +  +    V+L 
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVLV 82
Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 136
            P TYMN SG +   +A +YK+    +LV HD++ +  G                +S+ N
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI-N 141
Query: 137 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 195
              G  ++ RLRIGIG P  +     ++L   +   ++ ID+A+  G+  L  +++  L
Sbjct: 142 QHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKL 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	2e-96
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	1e-89
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	3e-87
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	3e-84
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	9e-81
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	6e-80
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	2e-79

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  278 bits (714), Expect = 2e-96
 Identities = 110/189 (58%), Positives = 144/189 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 136

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + 
Sbjct: 137 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 196

Query: 198 SARHFNTIQ 206
           S   FN +Q
Sbjct: 197 STERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  260 bits (668), Expect = 1e-89
 Identities = 77/189 (40%), Positives = 107/189 (56%), Gaps = 2/189 (1%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVL 74
           A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++
Sbjct: 2   AEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLV 61

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV 134
           LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+  GG GGHNGL+SV
Sbjct: 62  LAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSV 121

Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
           +    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G
Sbjct: 122 VAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQG 180

Query: 195 LTESARHFN 203
           +  +    +
Sbjct: 181 MEPAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  255 bits (653), Expect = 3e-87
 Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 1/190 (0%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVL 74
               L VGLGNPG +Y  TRHN G   ++  A +QG+S+          G+       V 
Sbjct: 2   TAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVR 61

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV 134
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV +L+  GGHGGHNGL+ +
Sbjct: 62  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDI 121

Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
           +        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+  
Sbjct: 122 IAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGD 181

Query: 195 LTESARHFNT 204
            T + +  ++
Sbjct: 182 WTRAMQKLHS 191

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  247 bits (632), Expect = 3e-84
 Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 1/190 (0%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
              N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + GLT+
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTK 182

Query: 198 SARHFNTIQK 207
           +    +  + 
Sbjct: 183 ATNRLHAFKA 192

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  239 bits (611), Expect = 9e-81
 Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 2/183 (1%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVL 74
            +  + +GLGN G +Y+ TRHNVG   I   A+    S ++         +  +    V+
Sbjct: 21  PKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVV 80

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV 134
           L  P TYMN SG +   +A +YK+    +LV HD++ +  G +RL+  GGHGGHNGL+S+
Sbjct: 81  LVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI 140

Query: 135 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 194
             +  G  ++ RLRIGIG P  +     ++L   +   ++ ID+A+  G+  L  +++  
Sbjct: 141 NQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYK 199

Query: 195 LTE 197
           L  
Sbjct: 200 LEP 202

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  236 bits (604), Expect = 6e-80
 Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 3/190 (1%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGLGNPG +Y  TRHN GF  ++  A+  GI++          G+G +    V L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           P TYMN SG+S  P + +Y++    +L+ HD++ +  GV+RL+  GGHGGHNGL+ ++ +
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
                 F RLRIGIG P  +      +L K  +  +  +D A+   +  +KLL+   + +
Sbjct: 125 I--GPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQ 182

Query: 198 SARHFNTIQK 207
           +    N  + 
Sbjct: 183 AMNQINAYKP 192

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  236 bits (604), Expect = 2e-79
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 12/197 (6%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGLGNPG +Y  TRHN GF ++D  A   G ++         + +  +    V L +
Sbjct: 24  KLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQTYMN SG+S   LA ++K+  N +LV HD++ LP G ++L+  GG GGHNGLK +  +
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143

Query: 138 FRGNREFARLRIGIGRPP----------GQMDPKAFLLQKFNAIARERIDTALQEGVEVL 187
              ++++ RLRIGIG P            + D   F+L+      ++ ID A++  + V+
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVM 202

Query: 188 KLLLSKGLTESARHFNT 204
             ++      +    + 
Sbjct: 203 PAVVKGETERAMMQLHR 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0
1cfz_A	162	Hydrogenase 2 maturation protease; metzincins, nic	88.75

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=1.7e-79  Score=521.30  Aligned_cols=187  Identities=35%  Similarity=0.638  Sum_probs=179.5

Q ss_pred             CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (218)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   96 (218)
                      |+|||||||||++|++||||||||++|+||++++.+++ +.++.+.++++.+.+++++|+||+||||+||+||+++++||
T Consensus         2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y   81 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence            68999999999999999999999999999999999987 56788999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcC-CCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        97 ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~g-t~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      +|+++++||||||||||+|++|+|.+||+|||||||||+++| | |++|+|||||||||..+.++++|||++|+++|++.
T Consensus        82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  160 (193)
T 2pth_A           82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL  160 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999 6 89999999999999644568999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      ++++++.|++|++.|+++++++|||+||.+
T Consensus       161 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  190 (193)
T 2pth_A          161 IDEAIDEAARCTEMWFTDGLTKATNRLHAF  190 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence            999999999999999999999999999974

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=1.6e-79  Score=520.73  Aligned_cols=187  Identities=41%  Similarity=0.792  Sum_probs=169.0

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   95 (218)
                      .|+|||||||||++|++|||||||+++|+||++++.++.+ .++.+.++++.+.+++++|+||+||||+||+||+++++|
T Consensus         3 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~   82 (191)
T 2z2i_A            3 EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKF   82 (191)
T ss_dssp             SCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHH
T ss_pred             ccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHH
Confidence            4799999999999999999999999999999999999865 468899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      |+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.
T Consensus        83 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  161 (191)
T 2z2i_A           83 YSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAE  161 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTT
T ss_pred             hCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 699999999999999655679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhc
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHFNT  204 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~  204 (218)
                      ++++++.|++|++.|+++++++|||+||.
T Consensus       162 l~~~i~~a~~a~~~~~~~~~~~amn~~n~  190 (191)
T 2z2i_A          162 VPTICEQAADATELLIEQGMEPAQNRVHA  190 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence            99999999999999999999999999995

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=6.8e-79  Score=521.39  Aligned_cols=191  Identities=57%  Similarity=1.056  Sum_probs=177.4

Q ss_pred             CCCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027817           15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   94 (218)
Q Consensus        15 ~~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   94 (218)
                      ++.++|||||||||++|++|||||||+++|+||++++.++++.++.+.++++.+.+++++|+||+||||+||+||+++++
T Consensus        14 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~   93 (205)
T 1ryb_A           14 EYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAA   93 (205)
T ss_dssp             -CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHH
Confidence            46789999999999999999999999999999999999988878999999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027817           95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  174 (218)
Q Consensus        95 ~~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~  174 (218)
                      ||+|++++|||||||||||+|++|+|.+||+|||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|++
T Consensus        94 ~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  173 (205)
T 1ryb_A           94 YYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERV  173 (205)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHH
T ss_pred             HhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999338899999999999965567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          175 RIDTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       175 ~l~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      .|+++++.|++|++.|+++++++|||+||..
T Consensus       174 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  204 (205)
T 1ryb_A          174 QIDTALEQGVDAVRTLVLKGFSGSTERFNLV  204 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            9999999999999999999999999999963

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=1.3e-78  Score=515.94  Aligned_cols=189  Identities=35%  Similarity=0.655  Sum_probs=181.2

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   95 (218)
                      .++|||||||||++|++|||||||+++|+||++++.++.+ .++.+.+++..+.+++++|+||+||||+||+||+++++|
T Consensus         3 ~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~   82 (193)
T 4hoy_A            3 NISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKF   82 (193)
T ss_dssp             CCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             CceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHH
Confidence            3689999999999999999999999999999999999855 578899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      |+++++++||||||||||+|++|+|.+||+|||||||||+++| || ||+|||||||||+++.++++|||++|+++|++.
T Consensus        83 ~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  160 (193)
T 4hoy_A           83 YQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL  160 (193)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHH
T ss_pred             cCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 56 799999999999888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhchhh
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHFNTIQK  207 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~~~  207 (218)
                      ++++++.|+++++.|+++++++|||+||++++
T Consensus       161 l~~~i~~a~~~i~~~~~~~~~~amn~~n~~kp  192 (193)
T 4hoy_A          161 MDGAIDHALSKVKLLVQGQVPQAMNQINAYKP  192 (193)
T ss_dssp             HHHHHHHHHHTHHHHHTTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence            99999999999999999999999999998654

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.3e-78  Score=517.65  Aligned_cols=188  Identities=35%  Similarity=0.622  Sum_probs=180.2

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   95 (218)
                      ..-|||||||||++|+.|||||||+++|+||++++.++.+ .+|.+.++++.+++++++|+||+||||+||+||+++++|
T Consensus         9 ~~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~   88 (199)
T 4fyj_A            9 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF   88 (199)
T ss_dssp             CCCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             eeeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHH
Confidence            3469999999999999999999999999999999999864 478899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCC-CccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027817           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIARE  174 (218)
Q Consensus        96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~-~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~  174 (218)
                      |+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|++
T Consensus        89 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  167 (199)
T 4fyj_A           89 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE  167 (199)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHH
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHH
Confidence            9999999999999999999999999999999999999999999 687 99999999999987778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          175 RIDTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       175 ~l~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      .|+++++.|++|++.|+++++++|||+||+.
T Consensus       168 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  198 (199)
T 4fyj_A          168 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ  198 (199)
T ss_dssp             HHHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            9999999999999999999999999999974

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=8e-78  Score=519.96  Aligned_cols=189  Identities=34%  Similarity=0.612  Sum_probs=175.8

Q ss_pred             CCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027817           16 ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   94 (218)
Q Consensus        16 ~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~   94 (218)
                      ..++|||||||||++|+.|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||+||+++++
T Consensus        21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~  100 (222)
T 3v2i_A           21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH  100 (222)
T ss_dssp             -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence            457899999999999999999999999999999999998764 6889999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCC----------CCCCCccccc
Q 027817           95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAFL  164 (218)
Q Consensus        95 ~~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP----------~~~~~v~~yV  164 (218)
                      ||+|++++|||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||          +.+.++++||
T Consensus       101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV  179 (222)
T 3v2i_A          101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV  179 (222)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence            99999999999999999999999999999999999999999999 689999999999999          5556899999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          165 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       165 Ls~f~~~E~~~l~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      |++|+++|++.|+++++.|++|++.|+++++++|||+||+.
T Consensus       180 L~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~  220 (222)
T 3v2i_A          180 LKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRN  220 (222)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999975

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=3.2e-78  Score=517.71  Aligned_cols=185  Identities=32%  Similarity=0.604  Sum_probs=178.7

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   95 (218)
                      .|+|||||||||++|++|||||||+++|+||++++.++.+. +|.+.++++.+.+++++|+||+||||+||+||+++++|
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~  101 (207)
T 3nea_A           22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF  101 (207)
T ss_dssp             CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence            58999999999999999999999999999999999998765 78899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      |+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.
T Consensus       102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~  180 (207)
T 3nea_A          102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKD  180 (207)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred             hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 699999999999999877789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhh
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHF  202 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~  202 (218)
                      |+++++.|++|++.|+++++++|||++
T Consensus       181 l~~~i~~a~~a~~~~~~~~~~~amn~~  207 (207)
T 3nea_A          181 IDSAIDNGICFLDDIINYKLEPVMQKL  207 (207)
T ss_dssp             HHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence            999999999999999999999999874

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.6e-79  Score=521.68  Aligned_cols=187  Identities=35%  Similarity=0.623  Sum_probs=178.2

Q ss_pred             CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (218)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   96 (218)
                      |+|||||||||++|++|||||||+++|+||++++.++. +.++.+.++++.+.+++++|+||+||||+||+||+++++||
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fy   83 (194)
T 4fno_A            4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   83 (194)
Confidence            68999999999999999999999999999999999876 45788899988888999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCC-CCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        97 ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt-~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      +|+++++||||||||||+|++|+|.+||+|||||||||+++| || ++|+|||||||||..+.++++|||++|+++|++.
T Consensus        84 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  162 (194)
T 4fno_A           84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL  162 (194)
Confidence            999999999999999999999999999999999999999999 68 8999999999999645579999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      ++++++.|++|++.|+++++++|||+||..
T Consensus       163 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  192 (194)
T 4fno_A          163 LDTSIDFALGVLPEMLAGDWTRAMQKLHSQ  192 (194)
Confidence            999999999999999999999999999973

>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A

Probab=88.75  E-value=4.3  Score=32.20  Aligned_cols=134  Identities=21%  Similarity=0.254  Sum_probs=72.1

Q ss_pred             CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHcC
Q 027817           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK   97 (218)
Q Consensus        18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~k   97 (218)
                      +.+|+|+|||-.    .===+|..++++|.+++..+.                 .+-++--.|    .|..+...+.   
T Consensus         2 ~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~-----------------~v~vid~gt----~~~~l~~~l~---   53 (162)
T 1cfz_A            2 RILVLGVGNILL----TDEAIGVRIVEALEQRYILPD-----------------YVEILDGGT----AGMELLGDMA---   53 (162)
T ss_dssp             CEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCT-----------------TEEEEEEET----CCGGGHHHHS---
T ss_pred             CEEEEEECCccc----ccccHHHHHHHHHHhhCCCCC-----------------CeEEEECCC----CHHHHHHHHh---
Confidence            368999999942    223699999999998754321                 111111101    1222211111   


Q ss_pred             CCCCcEEEEee---cCCCCCceEEEecC--------CCCCCCC-chhhHHHhhcCCCCcc-EE-EEeecCCCCCCCcccc
Q 027817           98 LPLNRVLVFHD---DMGLPCGVLRLRHN--------GGHGGHN-GLKSVMNNFRGNREFA-RL-RIGIGRPPGQMDPKAF  163 (218)
Q Consensus        98 i~~~~ilVihD---Dldlp~G~vrlk~g--------Gs~gGHN-GLkSIi~~L~gt~~f~-Rl-rIGIGrP~~~~~v~~y  163 (218)
                        -.+.+||.|   +.+.++|+++.-..        .+...|+ |+..+.+.+.-..+++ ++ =||| .|.   ++ ++
T Consensus        54 --~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~~  126 (162)
T 1cfz_A           54 --NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-EP  126 (162)
T ss_dssp             --SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-CS
T ss_pred             --CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-CC
Confidence              236777778   66889999886321        1223344 7777777652123455 33 4577 343   22 33


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHH
Q 027817          164 LLQKFNAIARERIDTALQEGVEVL  187 (218)
Q Consensus       164 VLs~f~~~E~~~l~~~i~~a~~~~  187 (218)
                       -...|++=++.++++++.+.+.+
T Consensus       127 -g~~LS~~v~~av~~a~~~i~~~l  149 (162)
T 1cfz_A          127 -HIGLTPTVEAMIEPALEQVLAAL  149 (162)
T ss_dssp             -BSSCCHHHHTTHHHHHHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHH
Confidence             34566665555555544444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	2e-58
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	3e-49

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  181 bits (459), Expect = 2e-58
 Identities = 110/189 (58%), Positives = 144/189 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 3   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +
Sbjct: 63  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 122

Query: 138 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 197
             G REF RL IGIG PPG+MDP+AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + 
Sbjct: 123 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 182

Query: 198 SARHFNTIQ 206
           S   FN +Q
Sbjct: 183 STERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  157 bits (398), Expect = 3e-49
 Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 1/185 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKP 78
           L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
            T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNGLK +++  
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 139 RGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 198
             N  F RLRIGIG P  +     F+L K     ++ ID A+ E     ++  + GLT++
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKA 183

Query: 199 ARHFN 203
               +
Sbjct: 184 TNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.9e-76  Score=497.33  Aligned_cols=189  Identities=58%  Similarity=1.075  Sum_probs=177.1

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHHc
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~   96 (218)
                      .+||||||||||++|++|||||||+++|.||++++.+++..++.+.++...+++++++|+||+||||+||++|++++++|
T Consensus         2 ~p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~   81 (191)
T d1ryba_           2 TPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYY   81 (191)
T ss_dssp             CCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             CceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHhh
Confidence            36999999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHHH
Q 027817           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERI  176 (218)
Q Consensus        97 ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~l  176 (218)
                      ++++++++|||||+|||+|++|+|.+||+|||||||||+++|+|+++|+|||||||||+.+.++++|||++|+++|++.+
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~l  161 (191)
T d1ryba_          82 QVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI  161 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHH
T ss_pred             ccCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999966788999999999998778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHhhhch
Q 027817          177 DTALQEGVEVLKLLLSKGLTESARHFNTI  205 (218)
Q Consensus       177 ~~~i~~a~~~~~~~i~~~~~~amn~~n~~  205 (218)
                      +++++.++++++.|+++|+++|||+||..
T Consensus       162 ~~~~~~~~~~~~~~i~~~~~~~mn~~N~~  190 (191)
T d1ryba_         162 DTALEQGVDAVRTLVLKGFSGSTERFNLV  190 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHhhCC
Confidence            99999999999999999999999999963

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-75  Score=492.32  Aligned_cols=191  Identities=34%  Similarity=0.614  Sum_probs=180.5

Q ss_pred             CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHH
Q 027817           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (218)
Q Consensus        17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~   95 (218)
                      .|+|||||||||++|++|||||||+++|.||++++.++.. .++.+.++...+.+.+++|+||+||||+||++|++++++
T Consensus         1 ~mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~   80 (193)
T d2ptha_           1 TIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF   80 (193)
T ss_dssp             CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             CEEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHH
Confidence            4789999999999999999999999999999999999764 467788888899999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHHH
Q 027817           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER  175 (218)
Q Consensus        96 ~ki~~~~ilVihDDldlp~G~vrlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~f~~~E~~~  175 (218)
                      |++++++++|||||+|||+|++|+|.+||+|||||||||+++|+.+++|+|||||||||+.+.++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~  160 (193)
T d2ptha_          81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL  160 (193)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred             hCCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999994345899999999999877789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHhhhchhh
Q 027817          176 IDTALQEGVEVLKLLLSKGLTESARHFNTIQK  207 (218)
Q Consensus       176 l~~~i~~a~~~~~~~i~~~~~~amn~~n~~~~  207 (218)
                      ++++++.|+++++.|+++|+++|||+||+.+.
T Consensus       161 l~~~i~~~~~~i~~~i~~g~~~amn~~N~~k~  192 (193)
T d2ptha_         161 IDEAIDEAARCTEMWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCcCC
Confidence            99999999999999999999999999998654