Citrus Sinensis ID: 027819

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDADPLPDSSPTQNSGQQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQPPSPSEVRGAGYF
cHHHHHHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEcccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHcccccEEEEEEEEcEEEEccccccEEEEEEEEEEccccEEEEEcccccccccccccccccccc
cccHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEEEEEcccccccEEEcccccEEEEEEEEEccccccccccccccccHHcccccccEEEEEEEcHHHHHHHHHHHccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEcccEEEEEccccccccccHHHccccccc
MAALTRRFYRSLllnpkfsqspkpfftsnifssssrvdsdldesaihsdadplpdssptqnsgqqresfdrplengldpgiFKAILVGqvgqspvqkklksgrtvtlfslgtggirnnrrplenenpteyanrcavqwhrvsvyperlggvvmkhlvpgstiyvegnleqkvfndpiTGLVRRIREIAIRRNGRlvflgkggdaqppspsevrgagyf
MAALTRRFYRSLllnpkfsqspkpfFTSNIFSSSSRVDSDLDESAIhsdadplpdssptqnsgQQRESFDRPLENGLDPGIFKAILVGQVGQspvqkklksgrtvtlfslgtggirnnrrplenenpteYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIyvegnleqkvfndpitgLVRRIREIAIRRNGRLvflgkggdaqppspsevrgagyf
MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDADPLPDSSPTQNSGQQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIrnnrrplenenpTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQPPSPSEVRGAGYF
*******FYRSLLL***************************************************************DPGIFKAILVGQVGQS*V***LKSGRTVTLFSLGTGGI*************EYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG*******************
*****************************************************************************DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNR********TEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRN**************************
MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDA*******************DRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGG****************
********************************************************************FDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNN******ENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKG**********V*****F
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDADPLPDSSPTQNSGQQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQPPSPSEVRGAGYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
Q84J78201 Single-stranded DNA-bindi no no 0.610 0.661 0.376 4e-23
Q8D254163 Single-stranded DNA-bindi yes no 0.504 0.674 0.341 1e-09
Q1RK72150 Single-stranded DNA-bindi yes no 0.559 0.813 0.286 1e-09
Q89A53166 Single-stranded DNA-bindi yes no 0.504 0.662 0.316 2e-09
Q9A894167 Single-stranded DNA-bindi yes no 0.527 0.688 0.341 4e-09
Q92G30152 Single-stranded DNA-bindi yes no 0.490 0.703 0.307 9e-09
Q4UJW3152 Single-stranded DNA-bindi yes no 0.490 0.703 0.307 2e-08
P57610171 Single-stranded DNA-bindi yes no 0.504 0.643 0.3 2e-08
Q68Y11152 Single-stranded DNA-bindi yes no 0.555 0.796 0.279 2e-08
Q9RHF4178 Single-stranded DNA-bindi N/A no 0.504 0.617 0.291 3e-08
>sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 90/146 (61%), Gaps = 13/146 (8%)

Query: 75  NGLDP-------GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENP 127
           +G+DP       G+ +AI+ G+VGQ+P+QK L++GRTVT+F++GTGG+ + R       P
Sbjct: 58  HGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQP 117

Query: 128 TEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
                    QWHR++V+ E LG   ++ L   S++YVEG++E +V+ND I+  V+ I EI
Sbjct: 118 K------PAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEI 171

Query: 188 AIRRNGRLVFLGKGGDAQPPSPSEVR 213
            +RR+G++  +  G      S  E++
Sbjct: 172 CVRRDGKIRMIKYGESISKISFDELK 197
Binds to ss-DNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8D254|SSB_WIGBR Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis GN=ssb PE=3 SV=2 Back     alignment and function description
>sp|Q1RK72|SSB_RICBR Single-stranded DNA-binding protein OS=Rickettsia bellii (strain RML369-C) GN=ssb PE=3 SV=1 Back     alignment and function description
>sp|Q89A53|SSB_BUCBP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=ssb PE=3 SV=1 Back     alignment and function description
>sp|Q9A894|SSB_CAUCR Single-stranded DNA-binding protein OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=ssb PE=3 SV=1 Back     alignment and function description
>sp|Q92G30|SSB_RICCN Single-stranded DNA-binding protein OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=ssb PE=3 SV=1 Back     alignment and function description
>sp|Q4UJW3|SSB_RICFE Single-stranded DNA-binding protein OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=ssb PE=3 SV=1 Back     alignment and function description
>sp|P57610|SSB_BUCAI Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=ssb PE=3 SV=1 Back     alignment and function description
>sp|Q68Y11|SSB_RICTY Single-stranded DNA-binding protein OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=ssb PE=3 SV=1 Back     alignment and function description
>sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
297834764223 single-strand-binding family protein [Ar 0.986 0.964 0.662 2e-77
15229675217 single-strand DNA-binding protein [Arabi 0.977 0.981 0.660 6e-76
449439377234 PREDICTED: single-stranded DNA-binding p 0.986 0.918 0.615 5e-72
255541852223 Single-stranded DNA-binding protein, mit 0.990 0.968 0.631 4e-70
224118858220 predicted protein [Populus trichocarpa] 0.986 0.977 0.625 9e-69
225427470221 PREDICTED: single-stranded DNA-binding p 0.770 0.760 0.710 2e-66
356511595207 PREDICTED: single-stranded DNA-binding p 0.917 0.966 0.574 1e-62
357135683214 PREDICTED: single-stranded DNA-binding p 0.908 0.925 0.570 2e-59
194701226224 unknown [Zea mays] gi|195612674|gb|ACG28 0.963 0.937 0.558 3e-57
115438823224 Os01g0642900 [Oryza sativa Japonica Grou 0.669 0.651 0.702 3e-57
>gi|297834764|ref|XP_002885264.1| single-strand-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297331104|gb|EFH61523.1| single-strand-binding family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 176/222 (79%), Gaps = 7/222 (3%)

Query: 1   MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDAD----PLPDS 56
           +A L+RR YRSLL NP+ SQS   F T+NI   SSR DSD DE + +SD +    P    
Sbjct: 5   VATLSRRLYRSLLSNPRISQSSMSFCTNNI---SSREDSDFDELSANSDTESPIEPKASD 61

Query: 57  SPTQNSGQQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIR 116
             ++ SG++R   +RPLENGLD GIFKAILVGQVGQ P+QKKLKSGRTVTLFS+GTGGIR
Sbjct: 62  PVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIR 121

Query: 117 NNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDP 176
           NNRRPL NE+P EYA+R AVQWHRVSVYPERL  +V+K++ PG+ IY+EGNLE K+F DP
Sbjct: 122 NNRRPLINEDPREYASRSAVQWHRVSVYPERLAELVLKNVEPGTVIYLEGNLETKIFTDP 181

Query: 177 ITGLVRRIREIAIRRNGRLVFLGKGGDAQPPSPSEVRGAGYF 218
           +TGLVRRIRE+AIRRNGR+VFLGK GD Q PS +E+RG GY+
Sbjct: 182 VTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSAELRGVGYY 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15229675|ref|NP_188488.1| single-strand DNA-binding protein [Arabidopsis thaliana] gi|9294319|dbj|BAB02216.1| unnamed protein product [Arabidopsis thaliana] gi|332642598|gb|AEE76119.1| single-strand DNA-binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449439377|ref|XP_004137462.1| PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Cucumis sativus] gi|449486863|ref|XP_004157425.1| PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255541852|ref|XP_002511990.1| Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis] gi|223549170|gb|EEF50659.1| Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224118858|ref|XP_002317924.1| predicted protein [Populus trichocarpa] gi|222858597|gb|EEE96144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225427470|ref|XP_002270678.1| PREDICTED: single-stranded DNA-binding protein, mitochondrial [Vitis vinifera] gi|296088446|emb|CBI37437.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511595|ref|XP_003524509.1| PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|357135683|ref|XP_003569438.1| PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|194701226|gb|ACF84697.1| unknown [Zea mays] gi|195612674|gb|ACG28167.1| single-stranded DNA-binding protein [Zea mays] gi|414881237|tpg|DAA58368.1| TPA: single-stranded DNA-binding protein [Zea mays] Back     alignment and taxonomy information
>gi|115438823|ref|NP_001043691.1| Os01g0642900 [Oryza sativa Japonica Group] gi|55297106|dbj|BAD68750.1| single-strand DNA binding protein-like [Oryza sativa Japonica Group] gi|113533222|dbj|BAF05605.1| Os01g0642900 [Oryza sativa Japonica Group] gi|125571356|gb|EAZ12871.1| hypothetical protein OsJ_02792 [Oryza sativa Japonica Group] gi|215686631|dbj|BAG88884.1| unnamed protein product [Oryza sativa Japonica Group] gi|215707058|dbj|BAG93518.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
TAIR|locus:2086889217 AT3G18580 [Arabidopsis thalian 0.977 0.981 0.614 8.5e-65
TAIR|locus:2136083201 MTSSB "mitochondrially targete 0.633 0.686 0.372 4.9e-21
UNIPROTKB|P09380146 ssbp1-a "Single-stranded DNA-b 0.532 0.794 0.295 9.7e-09
UNIPROTKB|E2RST4148 SSBP1 "Single-stranded DNA-bin 0.527 0.777 0.295 2.6e-08
UNIPROTKB|F1N1S0148 SSBP1 "Single-stranded DNA-bin 0.527 0.777 0.295 3.4e-08
UNIPROTKB|F1SRQ7148 SSBP1 "Single-stranded DNA-bin 0.527 0.777 0.286 4.5e-08
UNIPROTKB|Q95KK4148 SSBP1 "Single-stranded DNA-bin 0.527 0.777 0.303 4.5e-08
ZFIN|ZDB-GENE-050417-340146 ssbp1 "single-stranded DNA bin 0.536 0.801 0.298 4.5e-08
UNIPROTKB|E1BTE0149 SSBP1 "Single-stranded DNA-bin 0.527 0.771 0.286 5.9e-08
UNIPROTKB|P09381148 ssbp1-b "Single-stranded DNA-b 0.573 0.844 0.288 5.9e-08
TAIR|locus:2086889 AT3G18580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 134/218 (61%), Positives = 161/218 (73%)

Query:     1 MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDADPLPDSSPTQ 60
             MA L+RR YRSLL NP+ SQ+   F T+NI S     DSD DE  + S  +P      ++
Sbjct:     5 MATLSRRLYRSLLSNPRISQASMSFCTNNITSPE---DSDFDE--LESPIEPKASDPVSR 59

Query:    61 NSGQQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXX 120
              SG++R   +RPLENGLD GIFKAILVGQVGQ P+QKKLKSGRTVTLFS+GTGGI     
Sbjct:    60 FSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRR 119

Query:   121 XXXXXXXTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGL 180
                     EYA+R AVQWHRVSVYPERL  +V+K++ PG+ IY+EGNLE K+F DP+TGL
Sbjct:   120 PLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGL 179

Query:   181 VRRIREIAIRRNGRLVFLGKGGDAQPPSPSEVRGAGYF 218
             VRRIRE+AIRRNGR+VFLGK GD Q PS +E+RG GY+
Sbjct:   180 VRRIREVAIRRNGRVVFLGKAGDMQQPSSAELRGVGYY 217
GO:0003697 "single-stranded DNA binding" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2136083 MTSSB "mitochondrially targeted single-stranded DNA binding protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P09380 ssbp1-a "Single-stranded DNA-binding protein 1-A, mitochondrial" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E2RST4 SSBP1 "Single-stranded DNA-binding protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1S0 SSBP1 "Single-stranded DNA-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRQ7 SSBP1 "Single-stranded DNA-binding protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q95KK4 SSBP1 "Single-stranded DNA-binding protein, mitochondrial" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-340 ssbp1 "single-stranded DNA binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTE0 SSBP1 "Single-stranded DNA-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P09381 ssbp1-b "Single-stranded DNA-binding protein 1-B, mitochondrial" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
pfam00436104 pfam00436, SSB, Single-strand binding protein fami 2e-15
cd04496100 cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds 3e-14
PRK06642152 PRK06642, PRK06642, single-stranded DNA-binding pr 4e-11
PRK08763164 PRK08763, PRK08763, single-stranded DNA-binding pr 8e-09
PRK05733172 PRK05733, PRK05733, single-stranded DNA-binding pr 1e-08
PRK13732175 PRK13732, PRK13732, single-stranded DNA-binding pr 2e-08
PRK09010177 PRK09010, PRK09010, single-stranded DNA-binding pr 4e-08
PRK06341166 PRK06341, PRK06341, single-stranded DNA-binding pr 8e-08
TIGR00621164 TIGR00621, ssb, single stranded DNA-binding protei 9e-07
PRK06863168 PRK06863, PRK06863, single-stranded DNA-binding pr 9e-06
COG0629167 COG0629, Ssb, Single-stranded DNA-binding protein 7e-05
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 7e-05
>gnl|CDD|215919 pfam00436, SSB, Single-strand binding protein family Back     alignment and domain information 
 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 81  IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
           + K ILVG++ + P  +   +G  V  F+L       ++    +E            + R
Sbjct: 1   MNKVILVGRLTRDPELRYTPNGNAVANFTLAVNRRFKDQNGEGDE---------ETDFIR 51

Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191
           V V+  +L     ++L  GS +YVEG L  + + D   G  R + EI    
Sbjct: 52  VVVWG-KLAENAAEYLKKGSLVYVEGRLRTRKYEDQ-EGQKRYVTEIVADE 100

This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA. Length = 104
>gnl|CDD|239942 cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB) Back     alignment and domain information
>gnl|CDD|135984 PRK06642, PRK06642, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|181549 PRK08763, PRK08763, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|184284 PRK13732, PRK13732, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|236362 PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|233057 TIGR00621, ssb, single stranded DNA-binding protein (ssb) Back     alignment and domain information
>gnl|CDD|136097 PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|223702 COG0629, Ssb, Single-stranded DNA-binding protein [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
PRK06752112 single-stranded DNA-binding protein; Validated 99.97
PRK07459121 single-stranded DNA-binding protein; Provisional 99.97
PRK07275162 single-stranded DNA-binding protein; Provisional 99.97
PRK09010177 single-stranded DNA-binding protein; Provisional 99.97
PRK06642152 single-stranded DNA-binding protein; Provisional 99.97
PRK08763164 single-stranded DNA-binding protein; Provisional 99.97
PRK06863168 single-stranded DNA-binding protein; Provisional 99.97
PRK06958182 single-stranded DNA-binding protein; Provisional 99.97
PRK13732175 single-stranded DNA-binding protein; Provisional 99.96
PRK08486182 single-stranded DNA-binding protein; Provisional 99.96
PRK05733172 single-stranded DNA-binding protein; Provisional 99.96
PRK06751173 single-stranded DNA-binding protein; Provisional 99.96
PRK06341166 single-stranded DNA-binding protein; Provisional 99.96
PRK07274131 single-stranded DNA-binding protein; Provisional 99.96
TIGR00621164 ssb single stranded DNA-binding protein (ssb). Thi 99.96
PRK08182148 single-stranded DNA-binding protein; Provisional 99.96
PRK06293161 single-stranded DNA-binding protein; Provisional 99.95
KOG1653175 consensus Single-stranded DNA-binding protein [Rep 99.94
PF00436104 SSB: Single-strand binding protein family; InterPr 99.94
PRK07772186 single-stranded DNA-binding protein; Provisional 99.94
COG0629167 Ssb Single-stranded DNA-binding protein [DNA repli 99.92
PRK05813219 single-stranded DNA-binding protein; Provisional 99.92
PRK05853161 hypothetical protein; Validated 99.91
PRK02801101 primosomal replication protein N; Provisional 99.9
cd04496100 SSB_OBF SSB_OBF: A subfamily of OB folds similar t 99.88
PRK05813219 single-stranded DNA-binding protein; Provisional 99.8
PRK00036107 primosomal replication protein N; Reviewed 98.31
COG2965103 PriB Primosomal replication protein N [DNA replica 98.1
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 96.97
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 96.12
cd0448482 polC_OBF polC_OBF: A subfamily of OB folds corresp 96.03
cd0448773 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f 95.51
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 95.44
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 95.0
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 94.54
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 93.81
PRK07211 485 replication factor A; Reviewed 93.14
PF11506104 DUF3217: Protein of unknown function (DUF3217); In 92.28
PRK15491374 replication factor A; Provisional 92.14
COG3390196 Uncharacterized protein conserved in archaea [Func 90.94
cd0448291 RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara 90.69
PRK07211 485 replication factor A; Reviewed 90.48
PF1132584 DUF3127: Domain of unknown function (DUF3127); Int 89.53
PRK15491 374 replication factor A; Provisional 87.39
PRK13480 314 3'-5' exoribonuclease YhaM; Provisional 87.18
PF1374299 tRNA_anti_2: OB-fold nucleic acid binding domain 86.16
cd0448875 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f 85.85
TIGR00617 608 rpa1 replication factor-a protein 1 (rpa1). This f 85.77
PRK06461129 single-stranded DNA-binding protein; Reviewed 85.19
PRK00286 438 xseA exodeoxyribonuclease VII large subunit; Revie 85.09
TIGR00237 432 xseA exodeoxyribonuclease VII, large subunit. This 83.57
KOG3416134 consensus Predicted nucleic acid binding protein [ 83.06
PRK14699 484 replication factor A; Provisional 81.08
PRK07373449 DNA polymerase III subunit alpha; Reviewed 81.02
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 80.14
>PRK06752 single-stranded DNA-binding protein; Validated Back     alignment and domain information 
Probab=99.97  E-value=2.1e-30  Score=202.16  Aligned_cols=111  Identities=17%  Similarity=0.263  Sum_probs=102.0

Q ss_pred             CCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCCC
Q 027819           80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG  159 (218)
Q Consensus        80 ~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkKG  159 (218)
                      +||+|+|+|||++|||++++++|.++++|+||+++.|+++.    |+       ..++||+|++|| ++|+.+.++|+||
T Consensus         1 MmN~v~liGrl~~dPelr~t~~G~~~~~f~lAv~~~~~~~~----g~-------~~t~~~~v~~wg-~~Ae~~~~~l~KG   68 (112)
T PRK06752          1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSL----GE-------QQVDFINCVVWR-KSAENVTEYCTKG   68 (112)
T ss_pred             CceEEEEEEECcCCCEEEECCCCCEEEEEEEEECCCeEcCC----CC-------EEEEEEEEEEeh-HHHHHHHHhcCCC
Confidence            48999999999999999999999999999999999998652    32       269999999998 8999999999999


Q ss_pred             CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEeeCCCCCCC
Q 027819          160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLGKGGDAQP  206 (218)
Q Consensus       160 ~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L~~k~~~~~  206 (218)
                      +.|+|+|+|+++.|+++ +|++++.++|+|+   +|+||+++...+.
T Consensus        69 ~~V~V~G~l~~~~~~~~-~G~~~~~~ei~a~---~i~~l~~~~~~~~  111 (112)
T PRK06752         69 SLVGITGRIHTRNYEDD-QGKRIYITEVVIE---SITFLERRREGAS  111 (112)
T ss_pred             CEEEEEEEEEeCccCCC-CCcEEEEEEEEEE---EEEECCCCCcccC
Confidence            99999999999999999 9999999999999   9999998875543

>PRK07459 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK07275 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK09010 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06642 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK08763 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06863 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06958 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK13732 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK08486 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK05733 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06751 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06341 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK07274 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>TIGR00621 ssb single stranded DNA-binding protein (ssb) Back     alignment and domain information
>PRK08182 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK06293 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>KOG1653 consensus Single-stranded DNA-binding protein [Replication, recombination and repair] Back     alignment and domain information
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids Back     alignment and domain information
>PRK07772 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05813 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK05853 hypothetical protein; Validated Back     alignment and domain information
>PRK02801 primosomal replication protein N; Provisional Back     alignment and domain information
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB) Back     alignment and domain information
>PRK05813 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PRK00036 primosomal replication protein N; Reviewed Back     alignment and domain information
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) Back     alignment and domain information
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PF11506 DUF3217: Protein of unknown function (DUF3217); InterPro: IPR024506 This family of proteins with unknown function appears to be restricted to Mycoplasma Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>COG3390 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain Back     alignment and domain information
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK07373 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
3ulp_A124 Plasmodium Falciparum Ssb Complex With Ssdna Length 1e-07
1eqq_A178 Single Stranded Dna Binding Protein And Ssdna Compl 5e-07
3pgz_A193 Crystal Structure Of A Single Strand Binding Protei 7e-07
3tqy_A158 Structure Of A Single-Stranded Dna-Binding Protein 7e-07
1qvc_A145 Crystal Structure Analysis Of Single Stranded Dna B 3e-06
1eyg_A116 Crystal Structure Of Chymotryptic Fragment Of E. Co 5e-06
1kaw_A135 Structure Of Single Stranded Dna Binding Protein (S 7e-06
3lgj_A169 Crystal Structure Of Single-Stranded Binding Protei 8e-06
1sru_A113 Crystal Structure Of Full Length E. Coli Ssb Protei 2e-05
3ull_A132 Human Mitochondrial Single-Stranded Dna Binding Pro 3e-05
2dud_A133 Crystal Structure Of Human Mitochondrial Single-Str 3e-05
>pdb|3ULP|A Chain A, Plasmodium Falciparum Ssb Complex With Ssdna Length = 124 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 83  KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWHRVS 142
           K +L+G+VG  P  K L  G  V  FSL T               T+        WHR+ 
Sbjct: 8   KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTD--------WHRIV 59
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLE-QKVFNDPITGLVRRIREIAIRRN-GRLVFL 198
           VY + +  ++ K+L  G  +YV+G+L  +K   + +    ++I EI +  N G L+FL
Sbjct: 60  VYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFL 117
>pdb|1EQQ|A Chain A, Single Stranded Dna Binding Protein And Ssdna Complex Length = 178 Back     alignment and structure
>pdb|3PGZ|A Chain A, Crystal Structure Of A Single Strand Binding Protein (Ssb) From Bartonella Henselae Length = 193 Back     alignment and structure
>pdb|3TQY|A Chain A, Structure Of A Single-Stranded Dna-Binding Protein (Ssb), From Coxiella Burnetii Length = 158 Back     alignment and structure
>pdb|1QVC|A Chain A, Crystal Structure Analysis Of Single Stranded Dna Binding Protein (Ssb) From E.Coli Length = 145 Back     alignment and structure
>pdb|1EYG|A Chain A, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb Bound To Two 35-Mer Single Strand Dnas Length = 116 Back     alignment and structure
>pdb|1KAW|A Chain A, Structure Of Single Stranded Dna Binding Protein (Ssb) Length = 135 Back     alignment and structure
>pdb|3LGJ|A Chain A, Crystal Structure Of Single-Stranded Binding Protein (Ssb) From Bartonella Henselae Length = 169 Back     alignment and structure
>pdb|1SRU|A Chain A, Crystal Structure Of Full Length E. Coli Ssb Protein Length = 113 Back     alignment and structure
>pdb|3ULL|A Chain A, Human Mitochondrial Single-Stranded Dna Binding Protein Length = 132 Back     alignment and structure
>pdb|2DUD|A Chain A, Crystal Structure Of Human Mitochondrial Single-Stranded Dna-Binding Protein(Hmtssb) Length = 133 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
1qvc_A145 Single stranded DNA binding protein monomer; beta- 5e-16
3lgj_A169 Single-stranded DNA-binding protein; niaid, CAT sc 6e-16
1eqq_A178 Single stranded DNA binding protein; beta barrel, 3e-15
3ulp_A124 Single-strand binding protein; OB-fold, DNA bindin 4e-15
3pgz_A193 Single-stranded DNA-binding protein; ssgcid, singl 2e-14
3ull_A132 DNA binding protein; DNA replication, mitochondrio 6e-14
3tqy_A158 Single-stranded DNA-binding protein; DNA replicati 5e-13
1z9f_A153 Single-strand binding protein; TM0604, single stra 2e-09
2vw9_A134 Single-stranded DNA binding protein; DNA replicati 3e-08
2fxq_A 264 Single-strand binding protein; strand beta-sheet e 4e-08
2fxq_A264 Single-strand binding protein; strand beta-sheet e 2e-07
3vdy_A116 SSB, single-stranded DNA-binding protein SSBB; OB 1e-07
3afp_A168 Single-stranded DNA-binding protein; OB-fold, quat 3e-07
3eiv_A199 Single-stranded DNA-binding protein 2; DNA damage, 3e-07
1se8_A 301 Single-strand binding protein; DNA binding protein 6e-07
1se8_A301 Single-strand binding protein; DNA binding protein 1e-06
3koj_A108 Uncharacterized protein YCF41; single-strand bindi 2e-05
3k7u_C148 MP18 RNA editing complex protein; OB-fold, RNA-edi 3e-05
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A Length = 145 Back     alignment and structure
 Score = 71.3 bits (175), Expect = 5e-16
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 80  GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
           G+ K ILVG +GQ P  + + +G  V   +L T     ++   E +  TE        WH
Sbjct: 4   GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 55

Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
           RV ++  +L  V  ++L  GS +Y+EG L  + + D  +G  R   E+ +   G +  LG
Sbjct: 56  RVVLF-GKLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQMLG 113

Query: 200 KGGDAQPPSPSEVRGA 215
                  P+   + G 
Sbjct: 114 GRQGGGAPAGGNIGGG 129
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} Length = 169 Back     alignment and structure
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3 Length = 178 Back     alignment and structure
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum} Length = 124 Back     alignment and structure
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae} Length = 193 Back     alignment and structure
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A Length = 132 Back     alignment and structure
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii} Length = 158 Back     alignment and structure
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} Length = 153 Back     alignment and structure
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} Length = 134 Back     alignment and structure
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Length = 264 Back     alignment and structure
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Length = 264 Back     alignment and structure
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis} Length = 116 Back     alignment and structure
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A* Length = 168 Back     alignment and structure
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} Length = 199 Back     alignment and structure
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Length = 301 Back     alignment and structure
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Length = 301 Back     alignment and structure
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} Length = 108 Back     alignment and structure
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
3ulp_A124 Single-strand binding protein; OB-fold, DNA bindin 99.97
3tqy_A158 Single-stranded DNA-binding protein; DNA replicati 99.97
3vdy_A116 SSB, single-stranded DNA-binding protein SSBB; OB 99.97
3ull_A132 DNA binding protein; DNA replication, mitochondrio 99.97
3lgj_A169 Single-stranded DNA-binding protein; niaid, CAT sc 99.97
2vw9_A134 Single-stranded DNA binding protein; DNA replicati 99.96
3pgz_A193 Single-stranded DNA-binding protein; ssgcid, singl 99.96
1z9f_A153 Single-strand binding protein; TM0604, single stra 99.96
1qvc_A145 Single stranded DNA binding protein monomer; beta- 99.96
3k7u_C148 MP18 RNA editing complex protein; OB-fold, RNA-edi 99.96
3koj_A108 Uncharacterized protein YCF41; single-strand bindi 99.96
3afp_A168 Single-stranded DNA-binding protein; OB-fold, quat 99.96
4dam_A128 Single-stranded DNA-binding protein 1; OB-fold; 1. 99.96
1eqq_A178 Single stranded DNA binding protein; beta barrel, 99.96
3eiv_A199 Single-stranded DNA-binding protein 2; DNA damage, 99.95
3k81_C164 MP18 RNA editing complex protein; krepa6, single d 99.94
1se8_A 301 Single-strand binding protein; DNA binding protein 99.94
1v1q_A134 Primosomal replication protein N; primosome, DNA r 99.94
2fxq_A264 Single-strand binding protein; strand beta-sheet e 99.93
2fxq_A 264 Single-strand binding protein; strand beta-sheet e 99.93
4dni_A257 Fusion protein of RNA-editing complex proteins MP 99.93
1se8_A301 Single-strand binding protein; DNA binding protein 99.92
1txy_A104 Primosomal replication protein N; OB fold, dimer, 99.92
4gs3_A107 Single-stranded DNA-binding protein; primosome, ol 99.92
3fhw_A115 Primosomal replication protein N; PRIB BPR162 X-RA 99.91
3k8a_A103 Putative primosomal replication protein; beta-barr 99.9
3en2_A101 Probable primosomal replication protein N; PRIB RS 99.84
3stb_C148 RNA-editing complex protein MP42; editosome, nanob 99.82
4dni_A 257 Fusion protein of RNA-editing complex proteins MP 99.79
4dka_C105 RNA-editing complex protein MP81; krepa1, VHH, sin 97.12
3dm3_A105 Replication factor A; probably plays AN essential 95.18
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 94.65
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 94.55
3e0e_A97 Replication protein A; structural genomics, PSI-2, 94.49
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 93.76
2k50_A115 Replication factor A related protein; uncharacteri 93.58
2hql_A110 Hypothetical protein Mg376 homolog; structural gen 92.06
1jmc_A 246 Protein (replication protein A (RPA)); human ssDNA 89.22
3f2b_A 1041 DNA-directed DNA polymerase III alpha chain; DNA p 88.83
4gop_C 444 Putative uncharacterized protein; OB fold, ssDNA b 83.99
3au7_A402 TIAS, putative uncharacterized protein; ATP hydrol 81.73
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 81.52
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum} Back     alignment and structure
Probab=99.97  E-value=2.3e-30  Score=203.79  Aligned_cols=118  Identities=30%  Similarity=0.534  Sum_probs=100.4

Q ss_pred             CCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhcCC
Q 027819           79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP  158 (218)
Q Consensus        79 ~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~LkK  158 (218)
                      ++||+|+|+|||++||++|++++|.++++|+||+++.|++++   .|   +|.  ..++||+|++||+++|+.+.++|+|
T Consensus         4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~---~G---~~~--~~t~~~~v~~wg~~~Ae~~~~~l~K   75 (124)
T 3ulp_A            4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRN---TN---ELK--SKTDWHRIVVYDQNIVDLIDKYLRK   75 (124)
T ss_dssp             CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTT---TC---CEE--EEEEEEEEEECCHHHHHHHHHHCCT
T ss_pred             ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceeccc---CC---cEe--cccEEEEEEEEEchHHHHHHhhcCC
Confidence            479999999999999999999999999999999999998764   24   332  3799999999975699999999999


Q ss_pred             CCEEEEEEEeEeeeeeCCC-CCeEEEEEEEEEEe-CCcEEEeeCCCCC
Q 027819          159 GSTIYVEGNLEQKVFNDPI-TGLVRRIREIAIRR-NGRLVFLGKGGDA  204 (218)
Q Consensus       159 G~~V~VeG~L~t~~~~d~~-dG~~r~~~eI~v~~-~g~i~~L~~k~~~  204 (218)
                      |++|+|+|+|+++.|+++. +|++++.++|+|+. +++|+||+++++.
T Consensus        76 G~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~~  123 (124)
T 3ulp_A           76 GRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRNF  123 (124)
T ss_dssp             TCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-----
T ss_pred             CCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCCC
Confidence            9999999999999999863 79999999999985 7799999988754
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis} Back     alignment and structure
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A Back     alignment and structure
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} Back     alignment and structure
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} Back     alignment and structure
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae} Back     alignment and structure
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} Back     alignment and structure
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A Back     alignment and structure
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D Back     alignment and structure
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} Back     alignment and structure
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A* Back     alignment and structure
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor} Back     alignment and structure
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3 Back     alignment and structure
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} Back     alignment and structure
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei} Back     alignment and structure
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Back     alignment and structure
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A Back     alignment and structure
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Back     alignment and structure
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A Back     alignment and structure
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei} Back     alignment and structure
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Back     alignment and structure
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A Back     alignment and structure
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Back     alignment and structure
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} Back     alignment and structure
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei} Back     alignment and structure
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei} Back     alignment and structure
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae} Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 218
d1se8a_ 231 b.40.4.3 (A:) ssDNA-binding protein {Deinococcus r 3e-12
d1se8a_231 b.40.4.3 (A:) ssDNA-binding protein {Deinococcus r 5e-08
d3ulla_115 b.40.4.3 (A:) ssDNA-binding protein {Human (Homo s 2e-09
d1ue1a_118 b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium 9e-09
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Length = 231 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 61.5 bits (149), Expect = 3e-12
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 80  GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
           G+    L+G + + P  +   +G  V   ++            E   P          +H
Sbjct: 2   GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLP---------WYH 52

Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFLG 199
           RVS+  +       ++L  G  + VEG LE + +  P  G  R    +      R+  LG
Sbjct: 53  RVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAP-EGGKRSAVNVKAL---RMEQLG 108

Query: 200 KGGDAQPPSPSEVR 213
              +    +   VR
Sbjct: 109 TQPELIQDAGGGVR 122
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Length = 231 Back     information, alignment and structure
>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
d3ulla_115 ssDNA-binding protein {Human (Homo sapiens), mitoc 99.97
d1qvca_145 ssDNA-binding protein {Escherichia coli [TaxId: 56 99.97
d1ue1a_118 ssDNA-binding protein {Mycobacterium tuberculosis 99.95
d1se8a_ 231 ssDNA-binding protein {Deinococcus radiodurans [Ta 99.94
d1se8a_231 ssDNA-binding protein {Deinococcus radiodurans [Ta 99.94
d1v1qa_111 Primosomal replication protein N, PriB {Escherichi 99.91
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 96.05
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 95.49
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 93.35
>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Human (Homo sapiens), mitochondria [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=203.67  Aligned_cols=115  Identities=28%  Similarity=0.502  Sum_probs=98.7

Q ss_pred             CCCCCceEEEEEEeCcCCeEEEcCCCcEEEEEEEEeCceecCCCCCCCCCCccccccCceeEEEEEEeCchhHHHHHhhc
Q 027819           77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL  156 (218)
Q Consensus        77 ~~~~~N~v~LiGrIg~dPelr~~~nG~~v~~FsVav~~~~~dr~~g~~g~~~ey~d~~~t~w~~V~~wg~k~Ae~v~~~L  156 (218)
                      |+++||+|+|+||||+||++|++++|.++++|+||+++.|+++++... ..++|  .+.++||+|++||+.+|+.+.++|
T Consensus         1 ~~~~mN~V~L~G~l~~dpe~r~t~~G~~v~~f~vAv~~~~~~~~~~~~-~~g~~--~~~t~w~~v~~~g~~~a~~~~~~l   77 (115)
T d3ulla_           1 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVY-QLGDV--SQKTTWHRISVFRPGLRDVAYQYV   77 (115)
T ss_dssp             CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC----------CC--EEEEEEEEEEECSTTHHHHHHHHC
T ss_pred             CCCceeEEEEEEECCCCCEEEEeCCCCEEEEEEEEccccccccccccc-ccccc--eeeeeeeeeeeeecccchhhhhhc
Confidence            467899999999999999999999999999999999999987642111 11233  237999999999966899999999


Q ss_pred             CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEEe
Q 027819          157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGRLVFL  198 (218)
Q Consensus       157 kKG~~V~VeG~L~t~~~~d~~dG~~r~~~eI~v~~~g~i~~L  198 (218)
                      +||++|+|+|+|+++.|+|+ +|++++.++|+|+   +|+||
T Consensus        78 ~KG~~V~V~Grl~~~~~~dk-dG~~r~~~~v~a~---~i~~L  115 (115)
T d3ulla_          78 KKGSRIYLEGKIDYGEYMDK-NNVRRQATTIIAD---NIIFL  115 (115)
T ss_dssp             CTTCEEEEEEEEECCCEESS-SSEECCCEEEEEE---EEECC
T ss_pred             cCCCEEEEEEEEeeeeEECC-CCCEEEEEEEEEE---EEEeC
Confidence            99999999999999999999 9999999999999   99987
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure