Citrus Sinensis ID: 027830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MDMELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEccHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccccEEEEEEccccEEEEEEEEcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccHHHcccccccccEEEEEccHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHcccccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccEccccc
Coil and Loop (DISEMBL)
MDMELFFkkikpspreeahpsspLVHRLALELGRHKDLVESLWHAGDKLVvvdffspgcggckalhpkicqlaemnpdvqFLQVNYEEHKSMCYSLnvhvlpffrfyrgahgrvcsfsctnATIKKFKDALAkhtpdrcglgptkglEEKELLALAANkdlsfnytpkphpmpapaveevglaevppphsipnlplplpstlkstqEIEDKTLVSAGR
Flexible Loop (DISEMBL)
MDMELFFkkikpspreeahpssPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDalakhtpdrcglgptKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLplpstlkstqeiedktlvsagr
Low Complexity Region (SEG)
MDMELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTkgleekellalaankdlSFNYTPKPHPMPAPAVEEVGLAEVppphsipnlplplpstlksTQEIEDKTLVSAGR
Disordered region (IsUnstruct)
************************VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGP*******ELLALAA*************************************************************
Disordered Region (DISOPRED)
************************VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK*************************************************************************************
Disordered Region (DISEMBL)
MDMELFFKKIK************LVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR
Disordered Region (DISPRO)
******F*************SSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPK**************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
O64654	275	Thioredoxin-like 1-1, chl	yes	no	0.802	0.636	0.734	3e-75
Q10M18	279	Thioredoxin-like 1-2, chl	yes	no	0.811	0.634	0.678	9e-69
Q6Z4N3	279	Thioredoxin-like 1-1, chl	yes	no	0.944	0.738	0.604	5e-66
O22779	273	Thioredoxin-like 1-3, chl	no	no	0.605	0.483	0.772	9e-59
Q9XFI1	245	Thioredoxin-like 1-2, chl	no	no	0.619	0.551	0.674	6e-50
Q5TKD8	216	Thioredoxin-like 2, chlor	no	no	0.541	0.546	0.466	9e-30
Q8LEK4	221	Thioredoxin-like 2-1, chl	no	no	0.486	0.479	0.462	1e-26
Q8LCT3	236	Thioredoxin-like 2-2, chl	no	no	0.444	0.411	0.484	3e-23
O96952	106	Thioredoxin OS=Geodia cyd	N/A	no	0.371	0.764	0.345	8e-10
Q8IFW4	157	Thioredoxin-T OS=Drosophi	yes	no	0.431	0.598	0.364	7e-09

>sp|O64654|TRL11_ARATH Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1

 Score =  281 bits (718), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 154/188 (81%), Gaps = 13/188 (6%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   ++LV+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct: 101 EISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 160

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSL VHVLPFFRFYRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPTKGLEEK
Sbjct: 161 SMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEK 220

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIED 210
           EL+ALAANK+L+F YTPKP P+           E   P S P+LP+PLPS   +    ++
Sbjct: 221 ELVALAANKELNFTYTPKPVPVE---------KEAATPDSNPSLPVPLPSMSSN----DE 267

Query: 211 KTLVSAGR 218
           KTLVSAGR
Sbjct: 268 KTLVSAGR 275

Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10M18|TRL12_ORYSJ Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0326500 PE=2 SV=1

 Score =  259 bits (662), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 131/193 (67%), Positives = 151/193 (78%), Gaps = 16/193 (8%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +DLV+SL +AGD LV+VDFFSPGCGGC+ALHPKICQ+AE NPDV FLQVNYEEHK
Sbjct: 98  EVESAQDLVDSLTNAGDNLVIVDFFSPGCGGCRALHPKICQIAEQNPDVLFLQVNYEEHK 157

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSL+VHVLPFFRFYRGA GR+CSFSCTNATIKKF+DALAKH PDRC LGPT+GLEE 
Sbjct: 158 SMCYSLHVHVLPFFRFYRGAQGRLCSFSCTNATIKKFRDALAKHKPDRCSLGPTRGLEES 217

Query: 151 ELLALAANKDLSFNYTPKPHPMP---APAVEEV--GLAEVPPPHSIPNLPLPLPSTLKST 205
           ELLALAANKDL FNYT KP  +P   A A +E+  G  ++ PP      PL         
Sbjct: 218 ELLALAANKDLQFNYTKKPELVPSGDAAAAQELDRGSTKLSPPAK----PL-------VK 266

Query: 206 QEIEDKTLVSAGR 218
           Q  E+++LVS+GR
Sbjct: 267 QGSEERSLVSSGR 279

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z4N3|TRL11_ORYSJ Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0684100 PE=2 SV=1

 Score =  250 bits (639), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 158/225 (70%), Gaps = 19/225 (8%)

Query: 8   KKIKPSPR--EEAHPSSPLVHRLAL------------ELGRHKDLVESLWHAGDKLVVVD 53
           +K +P PR  E AH    L    A+            E+   +DL +SL +AGDKLVVVD
Sbjct: 60  RKARPLPRNLEAAHGQMNLTIGKAMRWWEKCLQPNMREIESAQDLADSLLNAGDKLVVVD 119

Query: 54  FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 113
           FFSPGCGGC+ALHPKI QLAE NP+V FLQVNYE+HKSMCYSL+VHVLPFFRFYRGA GR
Sbjct: 120 FFSPGCGGCRALHPKIAQLAEKNPEVLFLQVNYEKHKSMCYSLHVHVLPFFRFYRGAQGR 179

Query: 114 VCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHPMP 173
           V SFSCTNATIKKFKDALAKH PDRCGLGP KGLEE EL+ALA N+DL+F YTP    +P
Sbjct: 180 VSSFSCTNATIKKFKDALAKHGPDRCGLGPAKGLEESELMALAINRDLNFTYTPNQDLVP 239

Query: 174 APAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIEDKTLVSAGR 218
              + +  L E   P   P LPLP  +T    Q  E+ +L+S+GR
Sbjct: 240 ---IADALLKEAAAPGG-PWLPLPATATQLFIQGSEN-SLLSSGR 279

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22779|TRL13_ARATH Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1

 Score =  226 bits (576), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 120/132 (90%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS 95
           +DLV SL +AGDKLVVVDFFSP CGGCKALHPKIC++AE NP+V+FLQVNYEEH+S+C S
Sbjct: 102 QDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQS 161

Query: 96  LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLAL 155
           LN+HVLPFFRFYRG+ GRVCSFSCTNATI+KFK+AL KH  ++C +G TKGLEEKEL+A+
Sbjct: 162 LNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEKELVAM 221

Query: 156 AANKDLSFNYTP 167
           AANKDLSF+Y P
Sbjct: 222 AANKDLSFDYKP 233

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFI1|TRL12_ARATH Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 109/135 (80%)

Query: 30  LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
           LE+     LV+SL +AGD+LVV+DF+SPGCGGCK+LHPKICQLAE NP+V FL+VN EE 
Sbjct: 88  LEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEEL 147

Query: 90  KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEE 149
           ++MC+ LNVHVLPFF+FYRGA G+VCSFSCT ATI KFK AL KH  +RC LG  KGL+E
Sbjct: 148 RTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLGDAKGLDE 207

Query: 150 KELLALAANKDLSFN 164
           KEL ALA+  +L  N
Sbjct: 208 KELAALASVGELKMN 222

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5TKD8|TRL2_ORYSJ Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1

 Score =  130 bits (326), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 85/118 (72%)

Query: 30  LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
           +++   ++ +++L  AGD+LV+V+F+   CG C+AL P++C+ A  NPD+ FL+VN++E+
Sbjct: 82  IDIHSTQEFLDALRDAGDRLVIVEFYGTWCGSCRALFPRLCRTAVENPDILFLKVNFDEN 141

Query: 90  KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL 147
           K MC  LNV VLP+F FYRGA G++ +FSC+ A  +K KDA+A H   RC +GP  G+
Sbjct: 142 KPMCKRLNVKVLPYFHFYRGADGQLEAFSCSLAKFQKLKDAIAVHNTARCSIGPPVGV 199

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LEK4|TRL21_ARATH Thioredoxin-like 2-1, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 79/106 (74%)

Query: 30  LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
           +++   +  + +L  AGD+LV+VDF+   CG C+A+ PK+C+ A+ +P++ FL+VN++E+
Sbjct: 96  IDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDEN 155

Query: 90  KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135
           KS+C SLNV VLP+F FYRGA G+V SFSC+ A  +K ++A+ +H 
Sbjct: 156 KSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERHN 201

Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCT3|TRL22_ARATH Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 72/97 (74%)

Query: 30  LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
           +++   ++ + +L  AG++LV+V+F+   C  C+AL PK+C+ A  +PD+ FL+VN++E+
Sbjct: 106 VDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDEN 165

Query: 90  KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126
           K MC SLNV VLPFF FYRGA G++ SFSC+ A +KK
Sbjct: 166 KPMCKSLNVRVLPFFHFYRGADGQLESFSCSLAKVKK 202

Thiol-disulfide oxidoreductase that may participate in various redox reactions. Possesses insulin disulfide bonds reducing activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O96952|THIO_GEOCY Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%)

Query: 32  LGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS 91
           L    D  ++L  AGDKLVV+DF +  CG C+ + PK  ++A+  PDV F +V+ +E+  
Sbjct: 5   LKTKADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDE 64

Query: 92  MCYSLNVHVLPFFRFYRGAHG 112
              +  +  +P F+FY+    
Sbjct: 65  TAEAEKIQAMPTFKFYKSGKA 85

Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.

Geodia cydonium (taxid: 6047)

>sp|Q8IFW4|THIOT_DROME Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=2 SV=1

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 34  RHKD-LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKS 91
           R+KD L + L  A DKLVV+DF++  CG CK + PK+ +LA E +  V  L+VN +E++ 
Sbjct: 6   RNKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENED 65

Query: 92  MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF 127
           +    NV+ +P F F +G +       C +  + K 
Sbjct: 66  ITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKL 101

Probably participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. Its tissue specificity suggests a regulatory role in the germline.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
224144761	295	predicted protein [Populus trichocarpa]	0.857	0.633	0.8	7e-81
255568982	296	Thioredoxin, putative [Ricinus communis]	0.862	0.635	0.753	7e-79
380710175	287	chloroplast Trx [Gossypium hirsutum]	0.834	0.634	0.734	8e-75
224125912	304	predicted protein [Populus trichocarpa]	0.862	0.618	0.728	1e-74
356571680	297	PREDICTED: thioredoxin-like 1-1, chlorop	0.844	0.619	0.744	4e-74
255639909	248	unknown [Glycine max]	0.844	0.741	0.744	6e-74
384156891	222	thioredoxin-like protein 1.2, partial [P	0.862	0.846	0.728	8e-74
312282269	274	unnamed protein product [Thellungiella h	0.802	0.638	0.755	8e-74
15223262	275	thioredoxin-like 1-1 [Arabidopsis thalia	0.802	0.636	0.734	2e-73
145323804	244	thioredoxin-like 1-1 [Arabidopsis thalia	0.802	0.717	0.734	2e-73

>gi|224144761|ref|XP_002325404.1| predicted protein [Populus trichocarpa] gi|222862279|gb|EEE99785.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 165/190 (86%), Gaps = 3/190 (1%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +DLV+SL +AGD+LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK
Sbjct: 107 EVTSAQDLVDSLMNAGDQLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 166

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSLNVHVLPFFRFYRGAHGR+CSFSCTNATIKKFKDALAKHTP+RC LGPTKGLEEK
Sbjct: 167 SMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTPERCSLGPTKGLEEK 226

Query: 151 ELLALAANKDLSFNYTPKP-HPMPAPAVEEVGLAEVPPPHSIPNLPLPLP-STLKSTQEI 208
           EL+ALAANKDLSF YTPKP  P P PA EEV      P HS   LPLPLP ++ KS Q+ 
Sbjct: 227 ELVALAANKDLSFTYTPKPVQPAPVPAEEEVA-PTAGPSHSDRGLPLPLPITSSKSAQDS 285

Query: 209 EDKTLVSAGR 218
           E+KTLVS+GR
Sbjct: 286 EEKTLVSSGR 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568982|ref|XP_002525461.1| Thioredoxin, putative [Ricinus communis] gi|223535274|gb|EEF36951.1| Thioredoxin, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 144/191 (75%), Positives = 162/191 (84%), Gaps = 3/191 (1%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +DLV+SL +AGDKLV+VDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct: 106 EITSAQDLVDSLMNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 165

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSLNVHVLPFFRFYRGA GRVCSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEK
Sbjct: 166 SMCYSLNVHVLPFFRFYRGAQGRVCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEK 225

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLP---STLKSTQE 207
           EL+ALA+NKDL+F  TPKP    APA EE+  A + P H    LPLP+P   ++L S Q+
Sbjct: 226 ELIALASNKDLNFTCTPKPVQPTAPAQEEIIPAALTPAHVNQTLPLPIPLSTTSLMSAQD 285

Query: 208 IEDKTLVSAGR 218
           + +KTLV++GR
Sbjct: 286 LGEKTLVTSGR 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380710175|gb|AFD98846.1| chloroplast Trx [Gossypium hirsutum]

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 152/188 (80%), Gaps = 6/188 (3%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +DLV+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct: 106 EVASAQDLVDSLLNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 165

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSLNVHVLPFFRFYRGA GRVCSFSCTNATIKKF+DALAKHTPDRC L  TKGLEEK
Sbjct: 166 SMCYSLNVHVLPFFRFYRGAQGRVCSFSCTNATIKKFRDALAKHTPDRCSLSTTKGLEEK 225

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIED 210
           ELLAL+ANKDLSFNYT      P P   E+ + +  P  S   LPL +P+T    ++ E+
Sbjct: 226 ELLALSANKDLSFNYT------PIPTHGEILIWKQVPSDSTRKLPLSVPTTSAKQRDSEE 279

Query: 211 KTLVSAGR 218
           KTLV  GR
Sbjct: 280 KTLVGVGR 287

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125912|ref|XP_002319706.1| predicted protein [Populus trichocarpa] gi|118488527|gb|ABK96076.1| unknown [Populus trichocarpa] gi|222858082|gb|EEE95629.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/195 (72%), Positives = 155/195 (79%), Gaps = 7/195 (3%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +DLV+SL ++GDKLVVVDFFSPGCGGCKALHPK+CQLAEMNPDVQFLQVNYEEHK
Sbjct: 110 EVTSAQDLVDSLMNSGDKLVVVDFFSPGCGGCKALHPKLCQLAEMNPDVQFLQVNYEEHK 169

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSLNVHVLPFFR YRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEK
Sbjct: 170 SMCYSLNVHVLPFFRLYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEK 229

Query: 151 ELLALAANKDLSFNYTPKP-HPMPAPAVEEVGLAEVPPPHSIPNLPLPLP------STLK 203
           EL ALAANKDLSF YTPK   P P P  EE  +      HS   LP          ++LK
Sbjct: 230 ELAALAANKDLSFTYTPKKVQPAPVPVAEEEVVPATAASHSDGGLPPLPLTLPLPITSLK 289

Query: 204 STQEIEDKTLVSAGR 218
           S Q+ E+KTL  +GR
Sbjct: 290 SAQDSEEKTLAISGR 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571680|ref|XP_003554002.1| PREDICTED: thioredoxin-like 1-1, chloroplastic-like [Glycine max]

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 155/188 (82%), Gaps = 4/188 (2%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +D V+SL  AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct: 114 EVTSAQDFVDSLLSAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 173

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSLNVHVLPFFRFYRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEK
Sbjct: 174 SMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEK 233

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIED 210
           ELLALAANKDLSF  +P+P   PA A EE+G    P P S     LP PS + +++  + 
Sbjct: 234 ELLALAANKDLSFTNSPEP-LQPAHADEELGTEPAPAPGSK---SLPSPSMILNSEVSKK 289

Query: 211 KTLVSAGR 218
           +TL ++GR
Sbjct: 290 RTLTTSGR 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639909|gb|ACU20247.1| unknown [Glycine max]

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 155/188 (82%), Gaps = 4/188 (2%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +D V+SL  AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct: 65  EVTSAQDFVDSLLSAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 124

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSLNVHVLPFFRFYRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEK
Sbjct: 125 SMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEK 184

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIED 210
           ELLALAANKDLSF  +P+P   PA A EE+G    P P S     LP PS + +++  + 
Sbjct: 185 ELLALAANKDLSFTNSPEPL-QPAHADEELGTEPAPAPGSK---SLPSPSMILNSEVSKK 240

Query: 211 KTLVSAGR 218
           +TL ++GR
Sbjct: 241 RTLTTSGR 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|384156891|gb|AFH68082.1| thioredoxin-like protein 1.2, partial [Populus trichocarpa x Populus deltoides]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 142/195 (72%), Positives = 155/195 (79%), Gaps = 7/195 (3%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   +DLV+SL ++GDKLVVVDFFSPGCGGCKALHPK+CQLAEMNPDVQFLQVNYEEHK
Sbjct: 28  EVTSAQDLVDSLMNSGDKLVVVDFFSPGCGGCKALHPKLCQLAEMNPDVQFLQVNYEEHK 87

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSLNVHVLPFFR YRGAHGR+CSFSCTNATIKKFKDALAKHTPDRC LGPTKGLEEK
Sbjct: 88  SMCYSLNVHVLPFFRLYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGPTKGLEEK 147

Query: 151 ELLALAANKDLSFNYTPKP-HPMPAPAVEEVGLAEVPPPHSIPNLPLPLP------STLK 203
           EL ALAANKDLSF YTPK   P P P  EE  +      HS   LP          ++LK
Sbjct: 148 ELAALAANKDLSFTYTPKKVQPAPVPVAEEEVVPATAASHSDGGLPPLPLTLPLPITSLK 207

Query: 204 STQEIEDKTLVSAGR 218
           S Q+ E+KTL  +GR
Sbjct: 208 SAQDSEEKTLAISGR 222

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282269|dbj|BAJ34000.1| unnamed protein product [Thellungiella halophila]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 142/188 (75%), Positives = 157/188 (83%), Gaps = 13/188 (6%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   ++LV+SL +AGDKLVVVDFFSPGCGGCKALHPK+CQLAE NPDVQFLQVNYEEHK
Sbjct: 100 EISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKLCQLAEQNPDVQFLQVNYEEHK 159

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSL VHVLPFFRFYRGAHGRVCSFSCTNATIKKF+DALAKHTPDRC LGPTKGLEEK
Sbjct: 160 SMCYSLGVHVLPFFRFYRGAHGRVCSFSCTNATIKKFRDALAKHTPDRCSLGPTKGLEEK 219

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIED 210
           EL+ALAANK+L+F+YTPK  P     VEE    E   P S P+LP+P PS   S    ++
Sbjct: 220 ELVALAANKELNFSYTPKIVP-----VEE----EAASPTSNPSLPVPHPSMSAS----DE 266

Query: 211 KTLVSAGR 218
           KTLVSAGR
Sbjct: 267 KTLVSAGR 274

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223262|ref|NP_172333.1| thioredoxin-like 1-1 [Arabidopsis thaliana] gi|51701910|sp|O64654.1|TRL11_ARATH RecName: Full=Thioredoxin-like 1-1, chloroplastic; AltName: Full=Atypical cysteine/histidine-rich thioredoxin 4; Short=AtACHT4; AltName: Full=Lilium-type thioredoxin 1-1; Flags: Precursor gi|4973256|gb|AAD35005.1|AF144387_1 thioredoxin-like 1 [Arabidopsis thaliana] gi|9802552|gb|AAF99754.1|AC003981_4 F22O13.5 [Arabidopsis thaliana] gi|14334494|gb|AAK59444.1| putative thioredoxin [Arabidopsis thaliana] gi|17104801|gb|AAL34289.1| putative thioredoxin [Arabidopsis thaliana] gi|332190186|gb|AEE28307.1| thioredoxin-like 1-1 [Arabidopsis thaliana]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 154/188 (81%), Gaps = 13/188 (6%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   ++LV+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct: 101 EISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 160

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSL VHVLPFFRFYRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPTKGLEEK
Sbjct: 161 SMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEK 220

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIED 210
           EL+ALAANK+L+F YTPKP P+           E   P S P+LP+PLPS   +    ++
Sbjct: 221 ELVALAANKELNFTYTPKPVPVE---------KEAATPDSNPSLPVPLPSMSSN----DE 267

Query: 211 KTLVSAGR 218
           KTLVSAGR
Sbjct: 268 KTLVSAGR 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145323804|ref|NP_001077491.1| thioredoxin-like 1-1 [Arabidopsis thaliana] gi|332190187|gb|AEE28308.1| thioredoxin-like 1-1 [Arabidopsis thaliana]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 154/188 (81%), Gaps = 13/188 (6%)

Query: 31  ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
           E+   ++LV+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct: 70  EISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 129

Query: 91  SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK 150
           SMCYSL VHVLPFFRFYRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPTKGLEEK
Sbjct: 130 SMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEK 189

Query: 151 ELLALAANKDLSFNYTPKPHPMPAPAVEEVGLAEVPPPHSIPNLPLPLPSTLKSTQEIED 210
           EL+ALAANK+L+F YTPKP P+           E   P S P+LP+PLPS   +    ++
Sbjct: 190 ELVALAANKELNFTYTPKPVPVE---------KEAATPDSNPSLPVPLPSMSSN----DE 236

Query: 211 KTLVSAGR 218
           KTLVSAGR
Sbjct: 237 KTLVSAGR 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2025625	275	ACHT4 "atypical CYS HIS rich t	0.669	0.530	0.726	1.4e-55
TAIR|locus:2051048	273	ACHT3 "atypical CYS HIS rich t	0.605	0.483	0.659	7.9e-46
TAIR|locus:2163168	245	ACHT5 "atypical CYS HIS rich t	0.532	0.473	0.683	5.9e-41
TAIR|locus:2120860	221	ACHT1 "atypical CYS HIS rich t	0.481	0.475	0.466	1.4e-25
TAIR|locus:2134443	236	ACHT2 "atypical CYS HIS rich t	0.417	0.385	0.516	3.8e-23
UNIPROTKB|Q98TX1	105	TXN "Thioredoxin" [Ophiophagus	0.435	0.904	0.336	1.2e-10
FB|FBgn0029752	157	TrxT "Thioredoxin T" [Drosophi	0.440	0.611	0.357	1.5e-10
ZFIN|ZDB-GENE-030131-8581	108	zgc:56493 "zgc:56493" [Danio r	0.417	0.842	0.357	1.1e-09
RGD|1359251	550	Txndc2 "thioredoxin domain con	0.435	0.172	0.346	2e-09
UNIPROTKB|Q5XHX6	550	Txndc2 "Thioredoxin domain-con	0.435	0.172	0.346	2e-09

TAIR|locus:2025625 ACHT4 "atypical CYS HIS rich thioredoxin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 106/146 (72%), Positives = 115/146 (78%)

Query:    31 ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 90
             E+   ++LV+SL +AGDKLVVVDFFSPGCGGCKALHPKICQ AEMNPDVQFLQVNYEEHK
Sbjct:   101 EISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHK 160

Query:    91 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTXXXXXX 150
             SMCYSL VHVLPFFRFYRG+ GRVCSFSCTNATIKKF+DALAKH PDRC LGPT      
Sbjct:   161 SMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEK 220

Query:   151 XXXXXXXXXXXSFNYTPKPHPMPAPA 176
                        +F YTPKP P+   A
Sbjct:   221 ELVALAANKELNFTYTPKPVPVEKEA 246

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0031969 "chloroplast membrane" evidence=IDA

TAIR|locus:2051048 ACHT3 "atypical CYS HIS rich thioredoxin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 87/132 (65%), Positives = 103/132 (78%)

Query:    36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS 95
             +DLV SL +AGDKLVVVDFFSP CGGCKALHPKIC++AE NP+V+FLQVNYEEH+S+C S
Sbjct:   102 QDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQS 161

Query:    96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTXXXXXXXXXXX 155
             LN+HVLPFFRFYRG+ GRVCSFSCTNATI+KFK+AL KH  ++C +G T           
Sbjct:   162 LNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEKELVAM 221

Query:   156 XXXXXXSFNYTP 167
                   SF+Y P
Sbjct:   222 AANKDLSFDYKP 233

GO:0005739 "mitochondrion" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2163168 ACHT5 "atypical CYS HIS rich thioredoxin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 80/117 (68%), Positives = 96/117 (82%)

Query:    26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN 85
             H + LE+     LV+SL +AGD+LVV+DF+SPGCGGCK+LHPKICQLAE NP+V FL+VN
Sbjct:    85 HNM-LEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVN 143

Query:    86 YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLG 142
              EE ++MC+ LNVHVLPFF+FYRGA G+VCSFSCT ATI KFK AL KH  +RC LG
Sbjct:   144 QEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLG 200

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2120860 ACHT1 "atypical CYS HIS rich thioredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 49/105 (46%), Positives = 79/105 (75%)

Query:    30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
             +++   +  + +L  AGD+LV+VDF+   CG C+A+ PK+C+ A+ +P++ FL+VN++E+
Sbjct:    96 IDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDEN 155

Query:    90 KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
             KS+C SLNV VLP+F FYRGA G+V SFSC+ A  +K ++A+ +H
Sbjct:   156 KSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERH 200

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010109 "regulation of photosynthesis" evidence=IMP

GO:0051776 "detection of redox state" evidence=IMP

TAIR|locus:2134443 ACHT2 "atypical CYS HIS rich thioredoxin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 47/91 (51%), Positives = 69/91 (75%)

Query:    36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS 95
             ++ + +L  AG++LV+V+F+   C  C+AL PK+C+ A  +PD+ FL+VN++E+K MC S
Sbjct:   112 EEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKS 171

Query:    96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKK 126
             LNV VLPFF FYRGA G++ SFSC+ A +KK
Sbjct:   172 LNVRVLPFFHFYRGADGQLESFSCSLAKVKK 202

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

UNIPROTKB|Q98TX1 TXN "Thioredoxin" [Ophiophagus hannah (taxid:8665)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/101 (33%), Positives = 58/101 (57%)

Query:    37 DLVE---SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC 93
             DL E    L +AG KL+VVDF +  CG CK + P    + E  PDV F++++ ++ + + 
Sbjct:     7 DLTEFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVA 66

Query:    94 YSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
                +V  +P F+FY+  + +V  FS  N   +K ++A+ K+
Sbjct:    67 SHCDVKCMPTFQFYKN-NEKVHEFSGANK--EKLEEAIKKY 104

GO:0009314 "response to radiation" evidence=ISS

GO:0033158 "regulation of protein import into nucleus, translocation" evidence=ISS

GO:0043388 "positive regulation of DNA binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

FB|FBgn0029752 TrxT "Thioredoxin T" [Drosophila melanogaster (taxid:7227)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/98 (35%), Positives = 56/98 (57%)

Query:    34 RHKD-LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKS 91
             R+KD L + L  A DKLVV+DF++  CG CK + PK+ +LA E +  V  L+VN +E++ 
Sbjct:     6 RNKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENED 65

Query:    92 MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKD 129
             +    NV+ +P F F +G +       C +  + K  +
Sbjct:    66 ITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLME 103

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=NAS

GO:0000806 "Y chromosome" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=NAS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006457 "protein folding" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

ZFIN|ZDB-GENE-030131-8581 zgc:56493 "zgc:56493" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 35/98 (35%), Positives = 58/98 (59%)

Query:    40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSL 96
             ++L  AGDKLVVVDF +  CG C+++ P    L+E NPD   V FL+V+ ++ + +  S 
Sbjct:    13 KALAGAGDKLVVVDFTATWCGPCQSIAPFYKGLSE-NPDYSNVVFLKVDVDDAQDVAQSC 71

Query:    97 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
              +  +P F FY+    ++  FS +N T  K ++ + +H
Sbjct:    72 EIKCMPTFHFYKNGK-KLDDFSGSNQT--KLEEMVKQH 106

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|1359251 Txndc2 "thioredoxin domain containing 2 (spermatozoa)" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query:    36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS 95
             ++  E L  AG+KLV VDF +P CG C+ + P    L+  + DV FL+V+ E+ + +   
Sbjct:   454 EEFEEVLKDAGEKLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQD 513

Query:    96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 133
               V  LP F+FY+    +V  FS   A ++K + ++A+
Sbjct:   514 CEVFHLPTFQFYKNEE-KVGEFS--GALVEKLEKSIAE 548

GO:0001520 "outer dense fiber" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031514 "motile cilium" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q5XHX6 Txndc2 "Thioredoxin domain-containing protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query:    36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS 95
             ++  E L  AG+KLV VDF +P CG C+ + P    L+  + DV FL+V+ E+ + +   
Sbjct:   454 EEFEEVLKDAGEKLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQD 513

Query:    96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK 133
               V  LP F+FY+    +V  FS   A ++K + ++A+
Sbjct:   514 CEVFHLPTFQFYKNEE-KVGEFS--GALVEKLEKSIAE 548

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64654	TRL11_ARATH	No assigned EC number	0.7340	0.8027	0.6363	yes	no
Q10M18	TRL12_ORYSJ	No assigned EC number	0.6787	0.8119	0.6344	yes	no
Q6Z4N3	TRL11_ORYSJ	No assigned EC number	0.6044	0.9449	0.7383	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	1e-18
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	6e-12
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	7e-10
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	5e-09
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-08
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	3e-08
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	7e-08
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	6e-07
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	2e-06
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	3e-06
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	1e-05
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	4e-05
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	7e-05
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-04
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	2e-04
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	2e-04
cd02989	113	cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam	2e-04
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	4e-04
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	8e-04
cd03023	154	cd03023, DsbA_Com1_like, DsbA family, Com1-like su	8e-04
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	8e-04
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	0.001
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	0.002
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	0.004

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 76.8 bits (190), Expect = 1e-18
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
              K VVVDF++P CG CKA+ P + +LAE  P V+F++V+ +E+  +     V  +P F
Sbjct: 8   KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTF 67

Query: 105 RFYRG 109
            F++ 
Sbjct: 68  LFFKN 72

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 59.5 bits (145), Expect = 6e-12
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
             DK V+VDF++P CG CKAL P+  +LA E   DV+F +V+ +E+  +     V   P 
Sbjct: 16  KSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADENPDLASEYGVRGFPT 75

Query: 104 FRFYRG 109
            +F++ 
Sbjct: 76  IKFFKN 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVL 101
              K V+V+F++P CG CKAL P+  +LA+    +  V   +V+   +  +C    V   
Sbjct: 13  KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGY 72

Query: 102 PFFRFYRG 109
           P  + +  
Sbjct: 73  PTIKLFPN 80

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
           DK V+VDF++P CG CK + P + +LA E    V+F+++N +E+
Sbjct: 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN 57

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 16/64 (25%), Positives = 37/64 (57%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           + ++LV+VDF++  CG CK + P   + ++    + F++V+ +E   +    N+  +P F
Sbjct: 16  SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTF 75

Query: 105 RFYR 108
           + ++
Sbjct: 76  KVFK 79

Length = 98

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---M 92
           ++L E+L  A  +LVV++F     G    ++P + +L+    DV FL VN +E+ S   +
Sbjct: 4   EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMEL 63

Query: 93  CYSLNVHVLPFFRFYRGA 110
           C    +  +P F FY+  
Sbjct: 64  CRREKIIEVPHFLFYKDG 81

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 51  VVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           +VDF++P CG C+AL P++ + A      V+   V+ ++++S+C   N+   P  R Y
Sbjct: 23  LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY 80

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 46.8 bits (110), Expect = 6e-07
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 41 SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE 88
          SL     K V+VDF++P C  C+A  P + +LAE    DV+ + VN ++
Sbjct: 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDD 74

Length = 127

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
              VVV F+ PG   CK L   + +LA   P+ +F+++N E+   +   L++ VLP    
Sbjct: 24  GTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK-AFLVNYLDIKVLPTLLV 82

Query: 107 YRG--AHGRVCSFS 118
           Y+       +  F 
Sbjct: 83  YKNGELIDNIVGFE 96

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 42  LWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHV 100
           L+H  D+L++V + SP CG C+ L P + ++  E +  V F++++ +E + +  +  +  
Sbjct: 8   LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG 67

Query: 101 LPFFRFYR 108
            P  +F++
Sbjct: 68  TPTVQFFK 75

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 51  VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRFY 107
           +V F++P C  C+AL P + +LA +N  V+F  V+ +E  ++        V  +P    +
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60

Query: 108 RGAHGRV 114
               G  
Sbjct: 61  GPGIGVK 67

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 47  DKLVVVDFFSPGCGGCKALHP---KIC-QLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
           +++V+V F++P CG CK L P   K    L E   ++    V+  E   +     V   P
Sbjct: 49  NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108

Query: 103 FFRFYRG 109
             +F+  
Sbjct: 109 TIKFFNK 115

Length = 477

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
            KL+V+ F++P    CK ++    +LA E  P V FL +  EE   +     +  +P F 
Sbjct: 14  SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFV 73

Query: 106 FYRG 109
           F+R 
Sbjct: 74  FFRN 77

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 46  GDKLVVVDFFSPGCGGCKALHP---KICQ-LAEMNPDVQFLQVNYEEHKSMCYSLNVHVL 101
             + V+V+F++P CG CK+L P   K    L +  P ++  +V+  E K +     V   
Sbjct: 17  SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGY 76

Query: 102 PFFRFYR 108
           P  + +R
Sbjct: 77  PTLKIFR 83

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 17/82 (20%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAE----MNPDVQFLQVNYEEHKSMCYS----- 95
              K V+V F  P C  CK LH ++ +  +    +  +   + VN ++ K +        
Sbjct: 3   GNGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETL 62

Query: 96  --------LNVHVLPFFRFYRG 109
                     V   P   F  G
Sbjct: 63  SEKELARKYGVRGTPTIVFLDG 84

Length = 105

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 45 AGDKLVVVDFFSPGCGGCKALHP---KICQLAEMNPDVQFLQVNYEEHKSMC 93
            +K V+V+F++P CG CK L P   K+ +  + +PD+   +V+    K + 
Sbjct: 11 LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLA 62

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 48  KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           + VV  F+ P    CK +   +  LA+ + + +F++VN E+   +   LN+ VLP    +
Sbjct: 23  ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82

Query: 108 R 108
           +
Sbjct: 83  K 83

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEHKSMC 93
           K+V++ F++  C  C+A  P++ +L E    P V+ + V+ +  +   
Sbjct: 1  GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDEEEW 49

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 52  VDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           V FF+P CG CK L P   QLA+     NP V+  +V+  +H+ +C    V   P    +
Sbjct: 21  VKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80

Query: 108 RG 109
           + 
Sbjct: 81  KD 82

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239321 cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF 81
           + +V+FF   CG CK L P++ +L + +PDV+ 
Sbjct: 6  DVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRV 39

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. Length = 154

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 48  KLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNY-EEHKSMCYSLNVHVLPF 103
           K V+V+F++P CG CK L P+  +LA +     DV   +V+  E +K +     V   P 
Sbjct: 19  KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT 78

Query: 104 FRFY 107
            +F+
Sbjct: 79  LKFF 82

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEE 88
          K+V+V+F++  C  C+A  P++  LA+   +  V+ + VN ++
Sbjct: 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 47 DKLVVVDFFSPGCGGCKALHP 67
          D + +V+F++P CG CK L P
Sbjct: 18 DDVWLVEFYAPWCGHCKNLAP 38

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYE 87
          D  VV+DF++P CG C+   P    +A E +  V+F++VN E
Sbjct: 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE 93

Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.9
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.89
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.89
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.88
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.88
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.88
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.88
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.87
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.87
PHA02278	103	thioredoxin-like protein	99.87
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.87
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.86
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.86
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.86
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.85
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.85
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.85
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.85
PRK09381	109	trxA thioredoxin; Provisional	99.85
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.84
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.84
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.84
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.83
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.83
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.83
PRK10996	139	thioredoxin 2; Provisional	99.83
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.82
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.82
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.82
PTZ00051	98	thioredoxin; Provisional	99.82
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.81
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.81
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.81
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.81
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.8
PTZ00102	477	disulphide isomerase; Provisional	99.8
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.8
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.8
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.8
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.8
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.8
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.79
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.78
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.78
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.77
PTZ00062	204	glutaredoxin; Provisional	99.77
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.77
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.77
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.77
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.76
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.76
PLN02309	457	5'-adenylylsulfate reductase	99.76
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.76
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.75
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.74
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.74
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.74
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.72
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.72
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.71
PTZ00102	477	disulphide isomerase; Provisional	99.71
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.71
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.7
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.7
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.65
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.64
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.62
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.58
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.56
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.55
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.53
PHA02125	75	thioredoxin-like protein	99.52
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.52
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.5
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.46
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.45
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.45
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.44
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.42
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.42
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.42
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.39
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.39
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.39
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.39
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.38
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.36
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.36
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.32
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.3
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.28
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.26
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.26
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.21
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.19
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.18
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.14
PTZ00056	199	glutathione peroxidase; Provisional	99.13
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.11
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.11
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.11
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	99.08
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.08
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.07
PF13728	215	TraF: F plasmid transfer operon protein	99.06
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.05
KOG1672	211	consensus ATP binding protein [Posttranslational m	99.04
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.02
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.01
PLN02412	167	probable glutathione peroxidase	98.99
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.99
smart00594	122	UAS UAS domain.	98.98
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.97
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.96
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.94
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.93
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.92
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.88
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.87
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.78
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.77
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.77
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.74
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.73
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.73
PTZ00256	183	glutathione peroxidase; Provisional	98.72
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.72
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.72
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.71
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.63
PRK11200	85	grxA glutaredoxin 1; Provisional	98.61
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.59
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.58
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.57
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.56
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.55
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.51
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.48
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.48
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.47
PRK13190	202	putative peroxiredoxin; Provisional	98.44
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.43
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	98.42
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.4
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.4
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.4
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.38
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.38
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.34
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.33
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.32
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.3
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.3
PRK15000	200	peroxidase; Provisional	98.28
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.28
KOG3171	273	consensus Conserved phosducin-like protein [Signal	98.27
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.27
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.26
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.26
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.22
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.16
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.13
PRK13189	222	peroxiredoxin; Provisional	98.13
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.12
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.09
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.09
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.07
PRK13599	215	putative peroxiredoxin; Provisional	98.03
PRK13191	215	putative peroxiredoxin; Provisional	97.99
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.98
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.96
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.94
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.94
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.88
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.87
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.86
PRK10329	81	glutaredoxin-like protein; Provisional	97.84
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.81
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.73
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.72
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.72
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.7
PHA03050	108	glutaredoxin; Provisional	97.69
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.69
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	97.6
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.58
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.57
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.57
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.55
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.52
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	97.47
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.47
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.42
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.41
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.4
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	97.25
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.23
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.22
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.21
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.13
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.08
PRK10638	83	glutaredoxin 3; Provisional	97.07
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.93
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.89
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.8
PRK10824	115	glutaredoxin-4; Provisional	96.64
KOG2640	319	consensus Thioredoxin [Function unknown]	96.3
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	96.24
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	96.18
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	96.09
PTZ00062	204	glutaredoxin; Provisional	96.05
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	95.85
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	95.77
COG1331	667	Highly conserved protein containing a thioredoxin	95.68
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.36
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	95.02
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	94.89
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	94.72
PHA03075	123	glutaredoxin-like protein; Provisional	93.44
cd02978	72	KaiB_like KaiB-like family; composed of the circad	93.42
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	93.03
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	92.99
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	92.7
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	92.59
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	92.58
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	92.14
PRK09301	103	circadian clock protein KaiB; Provisional	91.25
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	91.08
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	91.0
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	90.11
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	89.69
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	89.67
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	89.26
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	89.26
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	89.03
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	88.85
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	88.61
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	88.52
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	88.21
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	87.68
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	87.24
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	86.05
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	85.94
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	85.91
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	85.8
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	85.06
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	85.05
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	84.87
PHA02278	103	thioredoxin-like protein	84.77
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	84.71
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	84.37
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	84.16
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	83.95
PRK12559	131	transcriptional regulator Spx; Provisional	83.66
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	82.91
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	82.85
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	82.84
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	80.67
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	80.51
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	80.38

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.2e-23  Score=160.58  Aligned_cols=107  Identities=18%  Similarity=0.380  Sum_probs=96.8

Q ss_pred             cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      .....+.+..+|++.+.+ ++.+|+|+|||+||++|+.+.|.++++..+|.| ++|++||.|++.+++.+|+|..+||++
T Consensus        42 ~~~~~~~s~~~~~~~Vi~-S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvl  120 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVIN-SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVL  120 (150)
T ss_pred             cccccccCHHHHHHHHHc-cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEE
Confidence            346677888899999986 899999999999999999999999999999987 999999999999999999999999999


Q ss_pred             EEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          106 FYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +|++|+ ....+. |..+.+.|.++|++.+.
T Consensus       121 vfknGe-~~d~~v-G~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  121 VFKNGE-KVDRFV-GAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEECCE-Eeeeec-ccCCHHHHHHHHHHHhc
Confidence            999996 444555 89999999999998764

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.89  E-value=2.4e-22  Score=149.10  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=87.1

Q ss_pred             cCcEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHH-HHCCCCcCCE
Q 027830           27 RLALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMC-YSLNVHVLPF  103 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~-~~~~I~~~Pt  103 (218)
                      .++.++++. +|.+.+. ..++++++|+|||+||++|+.+.|.|+++++.+.+ +.|++|||+.+.++| ++|+|.++||
T Consensus         9 ~~v~~l~~~-~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT   87 (113)
T cd03006           9 SPVLDFYKG-QLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV   87 (113)
T ss_pred             CCeEEechh-hhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence            567777765 5555421 34799999999999999999999999999999987 899999999999999 5899999999


Q ss_pred             EEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830          104 FRFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       104 i~l~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      +++|++|. ....+. |.++.+.|..|+
T Consensus        88 l~lf~~g~-~~~~y~-G~~~~~~i~~~~  113 (113)
T cd03006          88 IHLYYRSR-GPIEYK-GPMRAPYMEKFV  113 (113)
T ss_pred             EEEEECCc-cceEEe-CCCCHHHHHhhC
Confidence            99999986 456666 899999998873

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.89  E-value=8.2e-22  Score=142.26  Aligned_cols=98  Identities=27%  Similarity=0.531  Sum_probs=88.9

Q ss_pred             ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe
Q 027830           34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  112 (218)
Q Consensus        34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~  112 (218)
                      +.++|.+.+.+ ++++++|+||++||++|+.+.|.|.++++.+. ++.|+.||+++++.++++|+|.++||+++|++|+ 
T Consensus         5 t~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~-   82 (103)
T PF00085_consen    5 TDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK-   82 (103)
T ss_dssp             STTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE-
T ss_pred             CHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc-
Confidence            44678888865 68999999999999999999999999999998 6999999999999999999999999999999996 


Q ss_pred             eEEEEecCccCHHHHHHHHHhh
Q 027830          113 RVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                      ....+. |.++.++|.+||++|
T Consensus        83 ~~~~~~-g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   83 EVKRYN-GPRNAESLIEFIEKH  103 (103)
T ss_dssp             EEEEEE-SSSSHHHHHHHHHHH
T ss_pred             EEEEEE-CCCCHHHHHHHHHcC
Confidence            445555 889999999999986

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.88  E-value=3.3e-22  Score=145.36  Aligned_cols=93  Identities=13%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc-CcHHHHHHCCCCcCCEEEEEeCCCeeE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYRGAHGRV  114 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~-~~~~l~~~~~I~~~Pti~l~~~g~~~~  114 (218)
                      +.+.+++...++++++|+|||+||++|+.+.|.|+++++.++++.++.||++ +++.++++|+|.++||+++|++|  .+
T Consensus         7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~   84 (100)
T cd02999           7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR   84 (100)
T ss_pred             hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence            4566777777899999999999999999999999999999999999999999 89999999999999999999887  35


Q ss_pred             EEEecCccCHHHHHHHH
Q 027830          115 CSFSCTNATIKKFKDAL  131 (218)
Q Consensus       115 ~~~~~g~~~~~~l~~~l  131 (218)
                      ..+. |.++.++|.+||
T Consensus        85 ~~~~-G~~~~~~l~~f~  100 (100)
T cd02999          85 VRYN-GTRTLDSLAAFY  100 (100)
T ss_pred             eEec-CCCCHHHHHhhC
Confidence            6666 899999999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.88  E-value=4.8e-22  Score=144.79  Aligned_cols=101  Identities=24%  Similarity=0.453  Sum_probs=86.3

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l  106 (218)
                      ++.+++ .++|.+.+.+ ++++++|+|||+||++|+.+.|.|+++++++.+ +.|++|||++++++|++|+|.++||+++
T Consensus         2 ~v~~l~-~~~f~~~i~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLT-PEDFPELVLN-RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcC-HHHHHHHHhc-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            455664 4578887765 677999999999999999999999999999865 9999999999999999999999999999


Q ss_pred             EeCCCeeEEEEecCccC-HHHHHHHH
Q 027830          107 YRGAHGRVCSFSCTNAT-IKKFKDAL  131 (218)
Q Consensus       107 ~~~g~~~~~~~~~g~~~-~~~l~~~l  131 (218)
                      |++|...+..+. |..+ .++|.+||
T Consensus        80 ~~~g~~~~~~~~-G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNASKYHSYN-GWHRDADSILEFI  104 (104)
T ss_pred             EcCCCCCceEcc-CCCCCHHHHHhhC
Confidence            998843555665 7776 99998875

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.88  E-value=2e-21  Score=141.81  Aligned_cols=97  Identities=24%  Similarity=0.387  Sum_probs=83.7

Q ss_pred             ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH---HHHHHCCCCcCCEEEEEeCC
Q 027830           34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK---SMCYSLNVHVLPFFRFYRGA  110 (218)
Q Consensus        34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~---~l~~~~~I~~~Pti~l~~~g  110 (218)
                      +.++|.+.+.+..+++++|+|||+||++|+.+.|.|++++++++++.|+.||++++.   +++++|+|.++||++||++|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G   81 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG   81 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence            567899999876799999999999999999999999999999977999999999874   89999999999999999988


Q ss_pred             CeeEEEEecCccCHHHHHHHHHh
Q 027830          111 HGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       111 ~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                      + .+..+.  +...++|.+.+.+
T Consensus        82 ~-~v~~~~--G~~~~~l~~~~~~  101 (103)
T cd02985          82 E-KIHEEE--GIGPDELIGDVLY  101 (103)
T ss_pred             e-EEEEEe--CCCHHHHHHHHHh
Confidence            6 333343  4677888877754

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.88  E-value=9e-22  Score=142.78  Aligned_cols=98  Identities=17%  Similarity=0.344  Sum_probs=85.4

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l  106 (218)
                      ++++++ .++|.+.+.  .+++++|+|||+||++|+.+.|.|+++++.+.+ +.|++|||++++.+|++|+|.++||+++
T Consensus         2 ~~~~l~-~~~f~~~v~--~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLD-RGDFDAAVN--SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcC-HhhHHHHhc--CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            456665 457888774  468999999999999999999999999999976 8999999999999999999999999999


Q ss_pred             EeCCCeeEEEEecCccCHHHHHHH
Q 027830          107 YRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus       107 ~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      |++|+ .+..+. |.++.+.|.+|
T Consensus        79 ~~~g~-~~~~~~-G~~~~~~l~~f  100 (101)
T cd03003          79 FPSGM-NPEKYY-GDRSKESLVKF  100 (101)
T ss_pred             EcCCC-CcccCC-CCCCHHHHHhh
Confidence            99886 444555 88999998876

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.87  E-value=6.7e-22  Score=146.21  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830           35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      .++|.+.+....+++++|+|||+||++|+.+.|.++++++++++ +.|++||++++++++.+|+|.++||+++|++|+
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            46788888765789999999999999999999999999999998 799999999999999999999999999999986

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.3e-21  Score=142.01  Aligned_cols=94  Identities=45%  Similarity=0.729  Sum_probs=80.4

Q ss_pred             HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEE
Q 027830           38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSF  117 (218)
Q Consensus        38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~  117 (218)
                      +.......++++++|+|||+||++|+.+.|.+.+|+.+|+++.|++||+|+..++++.++|..+|||+||++|+ ++..+
T Consensus        12 ~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~   90 (106)
T KOG0907|consen   12 LVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEV   90 (106)
T ss_pred             HHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEE
Confidence            33334444679999999999999999999999999999999999999999999999999999999999999996 45555


Q ss_pred             ecCccCHHHHHHHHHhh
Q 027830          118 SCTNATIKKFKDALAKH  134 (218)
Q Consensus       118 ~~g~~~~~~l~~~l~~~  134 (218)
                      .  +.+.+++.+.|.++
T Consensus        91 v--Ga~~~~l~~~i~~~  105 (106)
T KOG0907|consen   91 V--GANKAELEKKIAKH  105 (106)
T ss_pred             e--cCCHHHHHHHHHhc
Confidence            5  45566888877654

>PHA02278 thioredoxin-like protein

Probab=99.87  E-value=2.8e-21  Score=141.12  Aligned_cols=94  Identities=17%  Similarity=0.256  Sum_probs=80.2

Q ss_pred             cChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCc----HHHHHHCCCCcCCEEEEE
Q 027830           33 GRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH----KSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        33 ~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~----~~l~~~~~I~~~Pti~l~  107 (218)
                      ++.++|.+.+.  .+++++|+|||+||++|+.+.|.++++++++. ++.|++||++.+    ++++++|+|.++||+++|
T Consensus         2 ~~~~~~~~~i~--~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f   79 (103)
T PHA02278          2 NSLVDLNTAIR--QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY   79 (103)
T ss_pred             CCHHHHHHHHh--CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence            56788988884  58999999999999999999999999998754 378999999976    689999999999999999


Q ss_pred             eCCCeeEEEEecCccCHHHHHHH
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      ++|+  .+....|..+.+.|.++
T Consensus        80 k~G~--~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         80 KDGQ--LVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             ECCE--EEEEEeCCCCHHHHHhh
Confidence            9986  44444477888887764

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.87  E-value=3.1e-21  Score=138.38  Aligned_cols=94  Identities=22%  Similarity=0.359  Sum_probs=82.6

Q ss_pred             hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830           37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~  115 (218)
                      +|.+.+.++.+++++|+|||+||++|+.+.|.++++++.+++ +.++.||++.++.++++|+|.++||+++|++|+ .+.
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~   80 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD   80 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence            567777665688999999999999999999999999999876 899999999999999999999999999999875 333


Q ss_pred             EEecCccCHHHHHHHHH
Q 027830          116 SFSCTNATIKKFKDALA  132 (218)
Q Consensus       116 ~~~~g~~~~~~l~~~l~  132 (218)
                      .+. |..+.++|.+||+
T Consensus        81 ~~~-g~~~~~~l~~~l~   96 (96)
T cd02956          81 GFQ-GAQPEEQLRQMLD   96 (96)
T ss_pred             eec-CCCCHHHHHHHhC
Confidence            444 8889999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.86  E-value=4.9e-21  Score=140.60  Aligned_cols=100  Identities=16%  Similarity=0.323  Sum_probs=84.5

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC----C---CcEEEEEeCcCcHHHHHHCCCCc
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----P---DVQFLQVNYEEHKSMCYSLNVHV  100 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~----~---~v~~~~Vd~~~~~~l~~~~~I~~  100 (218)
                      ++.+++ .++|.+.+.  .+++++|+|||+||++|+++.|.|+++++.+    +   ++.|++|||+.+.+++++|+|++
T Consensus         2 ~v~~l~-~~~f~~~i~--~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~   78 (108)
T cd02996           2 EIVSLT-SGNIDDILQ--SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK   78 (108)
T ss_pred             ceEEcC-HhhHHHHHh--cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence            456675 457888773  5789999999999999999999999998764    2   38999999999999999999999


Q ss_pred             CCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830          101 LPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       101 ~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      +||+++|++|+.....+. |.++.++|.+||
T Consensus        79 ~Ptl~~~~~g~~~~~~~~-g~~~~~~l~~fi  108 (108)
T cd02996          79 YPTLKLFRNGMMMKREYR-GQRSVEALAEFV  108 (108)
T ss_pred             CCEEEEEeCCcCcceecC-CCCCHHHHHhhC
Confidence            999999999862234455 899999999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3.4e-21  Score=161.49  Aligned_cols=108  Identities=20%  Similarity=0.377  Sum_probs=95.4

Q ss_pred             cCcEEecChhhHHHHH-HhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830           27 RLALELGRHKDLVESL-WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l-~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      .++++||+. +|.+.+ ..+..++|+|+||||||++|+.+.|.+++++.+|.+ +.+++||||+++.++..|||+++||+
T Consensus        23 ~~I~dvT~a-nfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV  101 (304)
T COG3118          23 PGIKDVTEA-NFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV  101 (304)
T ss_pred             ccceechHh-HHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence            338888876 455555 454566999999999999999999999999999988 99999999999999999999999999


Q ss_pred             EEEeCCCeeEEEEecCccCHHHHHHHHHhhCCC
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus       105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  137 (218)
                      ++|++|+ -+..|. |....+.++.||.++++.
T Consensus       102 ~af~dGq-pVdgF~-G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         102 YAFKDGQ-PVDGFQ-GAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EEeeCCc-CccccC-CCCcHHHHHHHHHHhcCh
Confidence            9999997 566666 888899999999999975

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.86  E-value=1.5e-20  Score=136.96  Aligned_cols=97  Identities=20%  Similarity=0.326  Sum_probs=84.1

Q ss_pred             EecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830           31 ELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        31 ~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~  108 (218)
                      .|.+.++|.+.+.  ++++++|+|||+||++|+.+.|.+.++++.+.+  +.|+.+|++ +.+++++|+|+++||+++|+
T Consensus         3 ~i~~~~~~~~~i~--~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~   79 (102)
T cd02948           3 EINNQEEWEELLS--NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYK   79 (102)
T ss_pred             EccCHHHHHHHHc--cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEE
Confidence            5788899999873  588999999999999999999999999999864  889999999 78899999999999999999


Q ss_pred             CCCeeEEEEecCccCHHHHHHHHHh
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                      +|+  .+....| .+.+.|.++|.+
T Consensus        80 ~g~--~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          80 NGE--LVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             CCE--EEEEEec-CChHHHHHHHhh
Confidence            885  4444434 588999998875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.85  E-value=1.3e-20  Score=144.44  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=92.0

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE-E
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR-F  106 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~-l  106 (218)
                      +..+.+.+++.+.+....+++|+|+|||+||++|+.+.|.|+++++++++ +.|++||+|+++++++.|+|++.||++ |
T Consensus         5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f   84 (142)
T PLN00410          5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF   84 (142)
T ss_pred             HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence            45678999999999866799999999999999999999999999999998 888999999999999999999877666 8


Q ss_pred             EeCCCeeEEEEecC--------ccCHHHHHHHHHhhCC
Q 027830          107 YRGAHGRVCSFSCT--------NATIKKFKDALAKHTP  136 (218)
Q Consensus       107 ~~~g~~~~~~~~~g--------~~~~~~l~~~l~~~~~  136 (218)
                      |++|+.. +.+..|        ..+.++|++.++....
T Consensus        85 fk~g~~~-vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~  121 (142)
T PLN00410         85 FRNKHIM-IDLGTGNNNKINWALKDKQEFIDIVETVYR  121 (142)
T ss_pred             EECCeEE-EEEecccccccccccCCHHHHHHHHHHHHH
Confidence            8998633 444336        5788889888887763

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.85  E-value=8.8e-21  Score=140.31  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=84.7

Q ss_pred             ChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCC
Q 027830           34 RHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  110 (218)
Q Consensus        34 s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g  110 (218)
                      +.++|.+.+. ...+++++|+|||+||++|+.+.|.|.++++++.  ++.|++||++.++.++++++|.++||+++|++|
T Consensus        10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g   89 (111)
T cd02963          10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING   89 (111)
T ss_pred             eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence            4456665443 3468999999999999999999999999999986  489999999999999999999999999999988


Q ss_pred             CeeEEEEecCccCHHHHHHHHHh
Q 027830          111 HGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       111 ~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                      +  ...+..|..+.+.|.+||++
T Consensus        90 ~--~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          90 Q--VTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             E--EEEEecCCCCHHHHHHHHhc
Confidence            5  45555588999999999976

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.85  E-value=1.9e-20  Score=140.16  Aligned_cols=103  Identities=13%  Similarity=0.133  Sum_probs=89.2

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChh--HH--hHHHHHHHHHHHC--CC-cEEEEEeCcCcHHHHHHCCCCc
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGG--CK--ALHPKICQLAEMN--PD-VQFLQVNYEEHKSMCYSLNVHV  100 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~--C~--~~~p~l~~la~~~--~~-v~~~~Vd~~~~~~l~~~~~I~~  100 (218)
                      .+..++ .++|.+.+.+ ++.++|++||+.||++  |+  .+.|.+.+++.++  .+ +.|++||++++++++++|+|++
T Consensus        10 ~v~~lt-~~nF~~~v~~-~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~   87 (120)
T cd03065          10 RVIDLN-EKNYKQVLKK-YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE   87 (120)
T ss_pred             ceeeCC-hhhHHHHHHh-CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence            355555 4688888875 6779999999999977  99  8899999999987  54 9999999999999999999999


Q ss_pred             CCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830          101 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       101 ~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      +||+++|++|+  .+.+. |.++.+.|.+||++..
T Consensus        88 iPTl~lfk~G~--~v~~~-G~~~~~~l~~~l~~~~  119 (120)
T cd03065          88 EDSIYVFKDDE--VIEYD-GEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccEEEEEECCE--EEEee-CCCCHHHHHHHHHHHh
Confidence            99999999986  45555 8999999999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.85  E-value=2.6e-20  Score=134.88  Aligned_cols=98  Identities=14%  Similarity=0.316  Sum_probs=83.7

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      ++++++ .++|.+.+ +  ++ ++|+|||+||++|+.+.|.|+++++.+.  ++.|++||+++++.++++|+|.++||++
T Consensus         2 ~v~~l~-~~~f~~~~-~--~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   76 (101)
T cd02994           2 NVVELT-DSNWTLVL-E--GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY   76 (101)
T ss_pred             ceEEcC-hhhHHHHh-C--CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence            466776 45787765 2  33 7899999999999999999999998875  4899999999999999999999999999


Q ss_pred             EEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830          106 FYRGAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                      +|++|+  +..+. |.++.++|.+||++
T Consensus        77 ~~~~g~--~~~~~-G~~~~~~l~~~i~~  101 (101)
T cd02994          77 HAKDGV--FRRYQ-GPRDKEDLISFIEE  101 (101)
T ss_pred             EeCCCC--EEEec-CCCCHHHHHHHHhC
Confidence            998885  45555 89999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.85  E-value=5.4e-20  Score=135.12  Aligned_cols=105  Identities=15%  Similarity=0.350  Sum_probs=90.6

Q ss_pred             cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      ..+++++. ++|.+.+.+ .+++++|+||++||++|+.+.|.|+++++.+++ +.|+.+|++.++.++++|+|.++||++
T Consensus         3 ~~v~~~~~-~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (109)
T PRK09381          3 DKIIHLTD-DSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL   80 (109)
T ss_pred             CcceeeCh-hhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence            45777765 577776654 688999999999999999999999999999976 999999999999999999999999999


Q ss_pred             EEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830          106 FYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      +|++|+  ......|..+.++|..+|.+++
T Consensus        81 ~~~~G~--~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         81 LFKNGE--VAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEeCCe--EEEEecCCCCHHHHHHHHHHhc
Confidence            998875  4444448889999999998875

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.84  E-value=3.3e-20  Score=137.75  Aligned_cols=84  Identities=25%  Similarity=0.419  Sum_probs=79.0

Q ss_pred             ccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      ...+..|++.++|.+.+.+  +++++|+||++||++|+.+.|.|++++++++++.|++||++++++++++|+|.++||++
T Consensus         3 ~g~v~~i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l   80 (113)
T cd02989           3 HGKYREVSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI   80 (113)
T ss_pred             CCCeEEeCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence            3568899998999999954  78999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCC
Q 027830          106 FYRGAH  111 (218)
Q Consensus       106 l~~~g~  111 (218)
                      +|++|+
T Consensus        81 ~fk~G~   86 (113)
T cd02989          81 LFKNGK   86 (113)
T ss_pred             EEECCE
Confidence            999996

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.84  E-value=2.8e-20  Score=136.21  Aligned_cols=100  Identities=25%  Similarity=0.479  Sum_probs=85.5

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcC--cHHHHHHCCCCcCCEEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~--~~~l~~~~~I~~~Pti~  105 (218)
                      ++++++ ++|.+.+.+ .+++++|+|||+||++|+.+.|.|.++++.+.+ +.|+.||++.  +..++++|+|.++||++
T Consensus         2 v~~l~~-~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTP-KNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcch-hhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            445554 467777765 688899999999999999999999999999876 8999999998  88999999999999999


Q ss_pred             EEeCCC---e-eEEEEecCccCHHHHHHHH
Q 027830          106 FYRGAH---G-RVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       106 l~~~g~---~-~~~~~~~g~~~~~~l~~~l  131 (218)
                      +|++|+   . ....|. |.++.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~-G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYN-GERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCccccccccccc-CccCHHHHHHHh
Confidence            998885   1 234455 899999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.84  E-value=6.5e-20  Score=135.98  Aligned_cols=83  Identities=29%  Similarity=0.538  Sum_probs=75.7

Q ss_pred             cCcEEecChhhHHHHHHhcC-CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           27 RLALELGRHKDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~-~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      ..+.+|++ ++|.+.+.+.+ +++++|+||++||++|+.+.|.|++++++|+++.|++||++++ .++++|+|.++||++
T Consensus         4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~   81 (113)
T cd02957           4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL   81 (113)
T ss_pred             ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence            45778888 78988887532 4899999999999999999999999999999999999999998 999999999999999


Q ss_pred             EEeCCC
Q 027830          106 FYRGAH  111 (218)
Q Consensus       106 l~~~g~  111 (218)
                      +|++|+
T Consensus        82 ~f~~G~   87 (113)
T cd02957          82 VYKNGE   87 (113)
T ss_pred             EEECCE
Confidence            999986

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.83  E-value=8.4e-20  Score=132.18  Aligned_cols=100  Identities=22%  Similarity=0.406  Sum_probs=86.3

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~  107 (218)
                      +.+++ .++|.+.+.+ .+++++|+||++||++|+.+.|.|.++++.+.+ +.|+.+|+++++.++++|+|+++|++++|
T Consensus         2 v~~l~-~~~~~~~i~~-~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELT-DSNFDKKVLN-SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcC-HHhHHHHHhc-CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            44554 4578777765 567799999999999999999999999998865 99999999999999999999999999999


Q ss_pred             eCCCeeEEEEecCccCHHHHHHHH
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      ++|+.....+. |..+.++|.+|+
T Consensus        80 ~~~~~~~~~~~-g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKNSPQDYQ-GGRTAKAIVSAA  102 (103)
T ss_pred             CCCCcceeecC-CCCCHHHHHHHh
Confidence            98854556666 899999999986

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3.2e-20  Score=151.43  Aligned_cols=109  Identities=28%  Similarity=0.493  Sum_probs=100.7

Q ss_pred             cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l  106 (218)
                      +.|+.|++..+|...+.....|.++|+|||+||++|+++.|.|..|+.+|++..|++||+++....+..+||...|||++
T Consensus         1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif   80 (288)
T KOG0908|consen    1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF   80 (288)
T ss_pred             CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence            46899999999999999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830          107 YRGAHGRVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       107 ~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~  138 (218)
                      |.+|. ++..+  .+.+...|+..+.+++...
T Consensus        81 f~ng~-kid~~--qGAd~~gLe~kv~~~~sts  109 (288)
T KOG0908|consen   81 FRNGV-KIDQI--QGADASGLEEKVAKYASTS  109 (288)
T ss_pred             EecCe-Eeeee--cCCCHHHHHHHHHHHhccC
Confidence            99996 55555  4789999999999998544

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.83  E-value=1.2e-19  Score=133.51  Aligned_cols=99  Identities=12%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCee
Q 027830           35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR  113 (218)
Q Consensus        35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~  113 (218)
                      .+++.+.+...++++|+|.|||+||++|+.+.|.|++++++|++ +.|++||+++.+++++.|+|...||++||++|+.-
T Consensus         2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986           2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence            45778888766799999999999999999999999999999999 99999999999999999999999999999999733


Q ss_pred             EEEEecCc--------cCHHHHHHHHHh
Q 027830          114 VCSFSCTN--------ATIKKFKDALAK  133 (218)
Q Consensus       114 ~~~~~~g~--------~~~~~l~~~l~~  133 (218)
                      .+.+..|+        .+.++|++.++-
T Consensus        82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~  109 (114)
T cd02986          82 KVDYGSPDHTKFVGSFKTKQDFIDLIEV  109 (114)
T ss_pred             EEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence            33333232        345677766654

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PRK10996 thioredoxin 2; Provisional

Probab=99.83  E-value=2.9e-19  Score=137.38  Aligned_cols=108  Identities=21%  Similarity=0.399  Sum_probs=91.7

Q ss_pred             cccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcC
Q 027830           23 PLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVL  101 (218)
Q Consensus        23 ~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~  101 (218)
                      .+....+.++ +.++|.+.+.  .+++++|+||++||++|+.+.|.|.++++++.+ +.|++||++++++++++|+|.++
T Consensus        31 ~~~~~~~i~~-~~~~~~~~i~--~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~  107 (139)
T PRK10996         31 DLFDGEVINA-TGETLDKLLQ--DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSI  107 (139)
T ss_pred             ccCCCCCEEc-CHHHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCcc
Confidence            4455566665 4567887773  589999999999999999999999999998765 99999999999999999999999


Q ss_pred             CEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830          102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       102 Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      ||+++|++|+  .+....|..+.+.|.+||++++
T Consensus       108 Ptlii~~~G~--~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        108 PTIMIFKNGQ--VVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             CEEEEEECCE--EEEEEcCCCCHHHHHHHHHHhC
Confidence            9999999875  4444448899999999998763

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.1e-20  Score=167.44  Aligned_cols=127  Identities=24%  Similarity=0.402  Sum_probs=106.9

Q ss_pred             hhhhhhcCCCCCCCCCCCCcccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cE
Q 027830            4 ELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQ   80 (218)
Q Consensus         4 ~~~~~~~~~~~~~~~~p~~~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~   80 (218)
                      +++-|+++++++|+++|+.+. ..+|+.+.. ++|.+++.+ .+|.|||.||||||+||+++.|+|++|++.|.+   +.
T Consensus       344 ~~l~Gk~~p~~kSqpiPe~~~-~~pVkvvVg-knfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vv  420 (493)
T KOG0190|consen  344 DFLDGKVKPHLKSQPIPEDND-RSPVKVVVG-KNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVV  420 (493)
T ss_pred             HHhcCccccccccCCCCcccc-cCCeEEEee-cCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcE
Confidence            567899999999999996554 344555554 367777765 899999999999999999999999999999864   99


Q ss_pred             EEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe-eEEEEecCccCHHHHHHHHHhhCC
Q 027830           81 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus        81 ~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~-~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +++||.+.|.  .....+.++|||.+|+.|.. .++.|. |.++.++|..||.++..
T Consensus       421 iAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~-g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  421 IAKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYN-GDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             EEEecccccc--CccccccccceEEEecCCCCCCCcccC-CCcchHHHHhhhccCCC
Confidence            9999999987  35667888999999988763 466776 99999999999999886

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.82  E-value=1.6e-19  Score=133.00  Aligned_cols=101  Identities=15%  Similarity=0.297  Sum_probs=83.8

Q ss_pred             cEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcC-cHHHHH-HCCCCcCCE
Q 027830           29 ALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE-HKSMCY-SLNVHVLPF  103 (218)
Q Consensus        29 v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~-~~~l~~-~~~I~~~Pt  103 (218)
                      |++++. ++|...+. ..++++++|.||++||++|+++.|.|.++++.+.+  +.++.||++. +..++. .|+|+++||
T Consensus         3 v~~~~~-~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           3 VVTLSR-AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             ceeccH-HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            455555 47777764 34689999999999999999999999999998864  8999999997 577886 499999999


Q ss_pred             EEEEeCCCeeEEEEecC-ccCHHHHHHHH
Q 027830          104 FRFYRGAHGRVCSFSCT-NATIKKFKDAL  131 (218)
Q Consensus       104 i~l~~~g~~~~~~~~~g-~~~~~~l~~~l  131 (218)
                      +++|.+|......|. | .++.+.|+.||
T Consensus        82 i~~f~~~~~~~~~y~-g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYP-SEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceecc-CCCCCHHHHHhhC
Confidence            999988765566676 5 58999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.82  E-value=2.9e-19  Score=147.23  Aligned_cols=107  Identities=12%  Similarity=0.228  Sum_probs=93.2

Q ss_pred             cCcEEecChhhHHHHHHhc---CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCC
Q 027830           27 RLALELGRHKDLVESLWHA---GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP  102 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~---~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~P  102 (218)
                      ..+.+++ .++|.+.+...   .+++++|+|||+||++|+.+.|.|+++++++++ +.|+.||++.+++++++|+|.++|
T Consensus        30 ~~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P  108 (224)
T PTZ00443         30 NALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP  108 (224)
T ss_pred             CCcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence            4577775 45888877542   368999999999999999999999999999987 899999999999999999999999


Q ss_pred             EEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       103 ti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      |+++|++|+  ...+..|.++.++|.+|+.+...
T Consensus       109 Tl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        109 TLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             EEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHH
Confidence            999999875  66666588999999999988874

>PTZ00051 thioredoxin; Provisional

Probab=99.82  E-value=4.4e-19  Score=127.55  Aligned_cols=95  Identities=21%  Similarity=0.410  Sum_probs=82.2

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~  108 (218)
                      +.++++.+++.+.+.  .+++++|+||++||++|+.+.+.|.++++.++++.|+.||++++..++++|+|.++||+++|+
T Consensus         2 v~~i~~~~~~~~~~~--~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   79 (98)
T PTZ00051          2 VHIVTSQAEFESTLS--QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK   79 (98)
T ss_pred             eEEecCHHHHHHHHh--cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence            578899999988874  588999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCCeeEEEEecCccCHHHHH
Q 027830          109 GAHGRVCSFSCTNATIKKFK  128 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~  128 (218)
                      +|+ .+..+. | ...++|.
T Consensus        80 ~g~-~~~~~~-G-~~~~~~~   96 (98)
T PTZ00051         80 NGS-VVDTLL-G-ANDEALK   96 (98)
T ss_pred             CCe-EEEEEe-C-CCHHHhh
Confidence            886 333333 4 4556554

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.81  E-value=4.1e-19  Score=127.40  Aligned_cols=95  Identities=24%  Similarity=0.442  Sum_probs=80.9

Q ss_pred             ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHH-CCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe
Q 027830           34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  112 (218)
Q Consensus        34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~-~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~  112 (218)
                      |.++|.+.+....+++++|+||++||++|+.+.+.|+++++. +.++.+++||++++++++++|+|.++||+++|++|+ 
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-   79 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT-   79 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-
Confidence            356788888765579999999999999999999999999998 556999999999999999999999999999999875 


Q ss_pred             eEEEEecCccCHHHHHHHH
Q 027830          113 RVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~l  131 (218)
                       ..... .+.+.++|.+.|
T Consensus        80 -~~~~~-~g~~~~~l~~~~   96 (97)
T cd02984          80 -IVDRV-SGADPKELAKKV   96 (97)
T ss_pred             -EEEEE-eCCCHHHHHHhh
Confidence             44443 345777777765

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.81  E-value=2.8e-19  Score=129.18  Aligned_cols=97  Identities=25%  Similarity=0.497  Sum_probs=82.1

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      +++++. ++|.+.+.+  + .++|+|||+||++|+.+.|.|.++++.+.    ++.|+.||++.+..+|++|+|.++||+
T Consensus         2 ~~~l~~-~~f~~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   77 (102)
T cd03005           2 VLELTE-DNFDHHIAE--G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTL   77 (102)
T ss_pred             eeECCH-HHHHHHhhc--C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence            345554 578888743  3 59999999999999999999999998874    389999999999999999999999999


Q ss_pred             EEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      ++|++|+ .+..+. |..+.++|.+||
T Consensus        78 ~~~~~g~-~~~~~~-G~~~~~~l~~~i  102 (102)
T cd03005          78 LLFKDGE-KVDKYK-GTRDLDSLKEFV  102 (102)
T ss_pred             EEEeCCC-eeeEee-CCCCHHHHHhhC
Confidence            9999886 444555 899999998875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.81  E-value=8e-19  Score=136.61  Aligned_cols=90  Identities=18%  Similarity=0.280  Sum_probs=77.8

Q ss_pred             cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCcHHHHHHCCCCc----
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV----  100 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~~~l~~~~~I~~----  100 (218)
                      ..+.+++. ++|.+.+..+.+++++|+|||+||++|+.+.|.|+++++++.  ++.|++||++++++++++|+|.+    
T Consensus        28 ~~v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v  106 (152)
T cd02962          28 EHIKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS  106 (152)
T ss_pred             CccEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence            56667765 678888866567899999999999999999999999999986  39999999999999999999988    


Q ss_pred             --CCEEEEEeCCCeeEEEEe
Q 027830          101 --LPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus       101 --~Pti~l~~~g~~~~~~~~  118 (218)
                        +||+++|++|+ .+..+.
T Consensus       107 ~~~PT~ilf~~Gk-~v~r~~  125 (152)
T cd02962         107 KQLPTIILFQGGK-EVARRP  125 (152)
T ss_pred             CCCCEEEEEECCE-EEEEEe
Confidence              99999999986 344443

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.81  E-value=5.4e-19  Score=140.84  Aligned_cols=109  Identities=22%  Similarity=0.417  Sum_probs=89.5

Q ss_pred             cccCcEEecChhhHHHHHHhcC-CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCE
Q 027830           25 VHRLALELGRHKDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  103 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~~-~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pt  103 (218)
                      ....+.+|++.++|.+.+.+.+ +.+|||+||++||++|+.+.|.|.+|+.+|++++|++||++++ .++.+|+|.++||
T Consensus        60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPT  138 (175)
T cd02987          60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPA  138 (175)
T ss_pred             CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCE
Confidence            3678899999788988886532 4599999999999999999999999999999999999999987 8999999999999


Q ss_pred             EEEEeCCC--eeEEEEe---cCccCHHHHHHHHHhh
Q 027830          104 FRFYRGAH--GRVCSFS---CTNATIKKFKDALAKH  134 (218)
Q Consensus       104 i~l~~~g~--~~~~~~~---~g~~~~~~l~~~l~~~  134 (218)
                      +++|++|+  .+++.+.   ....+.+.|+.+|.++
T Consensus       139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            99999997  1222221   1255677777777653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.80  E-value=6.5e-19  Score=127.60  Aligned_cols=98  Identities=22%  Similarity=0.428  Sum_probs=83.1

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--C-cEEEEEeCcC--cHHHHHHCCCCcCCE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--D-VQFLQVNYEE--HKSMCYSLNVHVLPF  103 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~-v~~~~Vd~~~--~~~l~~~~~I~~~Pt  103 (218)
                      +.++++ .+|.+.+.+  +++++|+|||+||++|+.+.|.+.++++.+.  + +.++.+|++.  +..++++|+|+++||
T Consensus         2 ~~~l~~-~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt   78 (104)
T cd02997           2 VVHLTD-EDFRKFLKK--EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPT   78 (104)
T ss_pred             eEEech-HhHHHHHhh--CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccE
Confidence            455654 478777754  6699999999999999999999999998875  3 8899999998  999999999999999


Q ss_pred             EEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830          104 FRFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       104 i~l~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      +++|++|+ .+..+. |..+.++|.+||
T Consensus        79 ~~~~~~g~-~~~~~~-g~~~~~~l~~~l  104 (104)
T cd02997          79 FKYFENGK-FVEKYE-GERTAEDIIEFM  104 (104)
T ss_pred             EEEEeCCC-eeEEeC-CCCCHHHHHhhC
Confidence            99999886 444444 889999998875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.80  E-value=7.3e-19  Score=159.55  Aligned_cols=129  Identities=20%  Similarity=0.357  Sum_probs=109.2

Q ss_pred             hhhhhhcCCCCCCCCCCCCcccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cE
Q 027830            4 ELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQ   80 (218)
Q Consensus         4 ~~~~~~~~~~~~~~~~p~~~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~   80 (218)
                      .++.|++++.+++++.|...  ...+..+.. ++|.+.+.+ .+++|+|+|||+||++|+.+.|.|+++++.+.+   +.
T Consensus       336 ~~~~gk~~~~~~se~~p~~~--~~~v~~l~~-~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~  411 (477)
T PTZ00102        336 DVEAGKVEKSIKSEPIPEEQ--DGPVKVVVG-NTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSII  411 (477)
T ss_pred             HHhCCCCCcccccCCCCCCC--CCCeEEecc-cchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEE
Confidence            35578889999999988664  466777765 577777654 689999999999999999999999999988753   89


Q ss_pred             EEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCC
Q 027830           81 FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus        81 ~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  137 (218)
                      ++++|++.+...++.|+++++||+++|++|+.....+. |.++.++|.+||+++...
T Consensus       412 ~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        412 VAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYE-GERTVEGFKEFVNKHATN  467 (477)
T ss_pred             EEEEECCCCccchhcCCCcccCeEEEEECCCcceeEec-CcCCHHHHHHHHHHcCCC
Confidence            99999999999999999999999999998853334555 899999999999999864

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.80  E-value=6.3e-19  Score=126.99  Aligned_cols=97  Identities=19%  Similarity=0.434  Sum_probs=85.6

Q ss_pred             hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830           35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      .++|.+.+.  .+++++|+||++||++|+.+.+.|+++++.+.+   +.++.+|++++..++++|+|.++|++++|++|+
T Consensus         3 ~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~   80 (102)
T TIGR01126         3 ASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK   80 (102)
T ss_pred             hhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence            356777774  688999999999999999999999999998864   999999999999999999999999999998886


Q ss_pred             eeEEEEecCccCHHHHHHHHHhhC
Q 027830          112 GRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       112 ~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                       ....+. |..+.++|..||++++
T Consensus        81 -~~~~~~-g~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        81 -KPVDYE-GGRDLEAIVEFVNEKS  102 (102)
T ss_pred             -cceeec-CCCCHHHHHHHHHhcC
Confidence             355666 8899999999998864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR01068 thioredoxin thioredoxin

Probab=99.80  E-value=1.4e-18  Score=124.73  Aligned_cols=98  Identities=23%  Similarity=0.465  Sum_probs=85.1

Q ss_pred             hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCee
Q 027830           35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR  113 (218)
Q Consensus        35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~  113 (218)
                      .+++.+.+.+ .+++++|+||++||++|+.+.+.+.++++.+++ +.|+.+|++.++.++++|+|.++|++++|++|+  
T Consensus         3 ~~~~~~~~~~-~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~--   79 (101)
T TIGR01068         3 DANFDETIAS-SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK--   79 (101)
T ss_pred             HHHHHHHHhh-cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc--
Confidence            4567777754 567999999999999999999999999988875 999999999999999999999999999998876  


Q ss_pred             EEEEecCccCHHHHHHHHHhhC
Q 027830          114 VCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       114 ~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      ......|..+.++|.+||++.+
T Consensus        80 ~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        80 EVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             EeeeecCCCCHHHHHHHHHhhC
Confidence            3444448889999999998764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.80  E-value=5.6e-19  Score=127.82  Aligned_cols=99  Identities=23%  Similarity=0.385  Sum_probs=83.3

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC---cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~---v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      +.+++. ++|.+.+.+ .+++++|+||++||++|+.+.|.|.++++.+.+   +.++++|++.+ +++..+++.++||++
T Consensus         2 v~~l~~-~~f~~~i~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~   78 (104)
T cd02995           2 VKVVVG-KNFDEVVLD-SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTIL   78 (104)
T ss_pred             eEEEch-hhhHHHHhC-CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEE
Confidence            455554 477777765 568999999999999999999999999998765   89999999987 578899999999999


Q ss_pred             EEeCCC-eeEEEEecCccCHHHHHHHH
Q 027830          106 FYRGAH-GRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       106 l~~~g~-~~~~~~~~g~~~~~~l~~~l  131 (218)
                      +|.+|+ .....+. |..+.++|.+||
T Consensus        79 ~~~~~~~~~~~~~~-g~~~~~~l~~fi  104 (104)
T cd02995          79 FFPAGDKSNPIKYE-GDRTLEDLIKFI  104 (104)
T ss_pred             EEcCCCcCCceEcc-CCcCHHHHHhhC
Confidence            998875 3455556 899999999886

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.9e-19  Score=159.32  Aligned_cols=127  Identities=21%  Similarity=0.356  Sum_probs=104.1

Q ss_pred             cccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCc
Q 027830           25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHV  100 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~  100 (218)
                      ....|..++. ++|.+.+  ..+..++|.||||||+||+++.|.+++.+..+.    .+.+++|||+.+.++|.+|+|++
T Consensus        23 ~~~~Vl~Lt~-dnf~~~i--~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g   99 (493)
T KOG0190|consen   23 AEEDVLVLTK-DNFKETI--NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG   99 (493)
T ss_pred             cccceEEEec-ccHHHHh--ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence            4456777766 4788888  458899999999999999999999999988753    49999999999999999999999


Q ss_pred             CCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCC
Q 027830          101 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKD  160 (218)
Q Consensus       101 ~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  160 (218)
                      |||+.+|++|. ....|. |.++.+.|+.||+++.+.....    -.+.++...+....+
T Consensus       100 yPTlkiFrnG~-~~~~Y~-G~r~adgIv~wl~kq~gPa~~~----l~~~~~a~~~l~~~~  153 (493)
T KOG0190|consen  100 YPTLKIFRNGR-SAQDYN-GPREADGIVKWLKKQSGPASKT----LKTVDEAEEFLSKKD  153 (493)
T ss_pred             CCeEEEEecCC-cceecc-CcccHHHHHHHHHhccCCCcee----cccHHHHHhhccCCc
Confidence            99999999986 246666 9999999999999999755321    124556666666655

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.80  E-value=6e-19  Score=127.74  Aligned_cols=100  Identities=23%  Similarity=0.451  Sum_probs=84.1

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcC-cHHHHHHCCCCcCCEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE-HKSMCYSLNVHVLPFF  104 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~-~~~l~~~~~I~~~Pti  104 (218)
                      +.++++ +++.+.+.. .+++++|+||++||++|+.+.|.|.++++.+.   ++.++.+|++. ++.++++|+|.++|++
T Consensus         2 ~~~l~~-~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~   79 (105)
T cd02998           2 VVELTD-SNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL   79 (105)
T ss_pred             eEEcch-hcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence            455654 577776643 56799999999999999999999999999875   39999999999 9999999999999999


Q ss_pred             EEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      ++|.+|......+. |..+.++|.+||
T Consensus        80 ~~~~~~~~~~~~~~-g~~~~~~l~~~i  105 (105)
T cd02998          80 KFFPKGSTEPVKYE-GGRDLEDLVKFV  105 (105)
T ss_pred             EEEeCCCCCccccC-CccCHHHHHhhC
Confidence            99988743444454 889999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.79  E-value=1.4e-18  Score=127.72  Aligned_cols=90  Identities=12%  Similarity=0.108  Sum_probs=78.3

Q ss_pred             hhhHHHHHHhcCCCeEEEEEECCC--ChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830           35 HKDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        35 ~~~~~~~l~~~~~k~vlV~Fya~w--C~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ..+|.+.+  ..+..++|.||++|  |++|+.+.|.|.+++++|++ +.|++||++++++++.+|+|+++||+++|++|+
T Consensus        17 ~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk   94 (111)
T cd02965          17 AATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR   94 (111)
T ss_pred             cccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence            34677776  35889999999997  99999999999999999988 899999999999999999999999999999986


Q ss_pred             eeEEEEecCccCHHHHH
Q 027830          112 GRVCSFSCTNATIKKFK  128 (218)
Q Consensus       112 ~~~~~~~~g~~~~~~l~  128 (218)
                        .+....|..+.+++.
T Consensus        95 --~v~~~~G~~~~~e~~  109 (111)
T cd02965          95 --YVGVLAGIRDWDEYV  109 (111)
T ss_pred             --EEEEEeCccCHHHHh
Confidence              444444888887775

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.78  E-value=1.6e-18  Score=126.38  Aligned_cols=93  Identities=17%  Similarity=0.353  Sum_probs=79.4

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++|.+ +.  .+++++|.|||+||++|+.+.|.|+++++.+.    ++.++.+|++..+.++++|+|.++||+++|++|.
T Consensus         7 ~~~~~-~~--~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~   83 (104)
T cd03000           7 DSFKD-VR--KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL   83 (104)
T ss_pred             hhhhh-hc--cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC
Confidence            45555 32  47799999999999999999999999999873    3899999999999999999999999999997653


Q ss_pred             eeEEEEecCccCHHHHHHHHHhh
Q 027830          112 GRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus       112 ~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                        ...+. |..+.++|.+|+++.
T Consensus        84 --~~~~~-G~~~~~~l~~~~~~~  103 (104)
T cd03000          84 --AYNYR-GPRTKDDIVEFANRV  103 (104)
T ss_pred             --ceeec-CCCCHHHHHHHHHhh
Confidence              44455 889999999999875

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.78  E-value=1.3e-18  Score=126.70  Aligned_cols=95  Identities=22%  Similarity=0.245  Sum_probs=77.4

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHH---HHHHHHCC-CcEEEEEeCcC----cHHHHHHCCCCcCCEEEEE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEE----HKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l---~~la~~~~-~v~~~~Vd~~~----~~~l~~~~~I~~~Pti~l~  107 (218)
                      ++|.+.+.  ++++++|+||++||++|+.+.+.+   .++++.+. ++.++.||+++    ...++++|+|.++||+++|
T Consensus         2 ~~~~~~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           2 AALAQALA--QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHHHH--cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            35666663  589999999999999999999988   57887777 59999999987    6789999999999999999


Q ss_pred             eCCCeeEEEEecCccCHHHHHHHHH
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDALA  132 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~l~  132 (218)
                      +.|+|+......|..+.++|.++|+
T Consensus        80 ~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          80 GPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCCcccccccCHHHHHHHhC
Confidence            8422334443448999999998873

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.77  E-value=6.2e-18  Score=130.42  Aligned_cols=97  Identities=19%  Similarity=0.292  Sum_probs=81.2

Q ss_pred             hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCc--HHHHHHCCCCcCCEEEEEe-CCCe
Q 027830           37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH--KSMCYSLNVHVLPFFRFYR-GAHG  112 (218)
Q Consensus        37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~--~~l~~~~~I~~~Pti~l~~-~g~~  112 (218)
                      ++.+.+  ..++++||+|||+||++|+.+.|.|.++++.|.+ +.|+.||++..  ..++++|+|.++||++||+ +|+ 
T Consensus        12 ~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~-   88 (142)
T cd02950          12 PPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN-   88 (142)
T ss_pred             CHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC-
Confidence            455555  3589999999999999999999999999999865 78888888754  5789999999999999995 554 


Q ss_pred             eEEEEecCccCHHHHHHHHHhhCCC
Q 027830          113 RVCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~l~~~~~~  137 (218)
                       ++....|..+.++|.++|++.+..
T Consensus        89 -~v~~~~G~~~~~~l~~~l~~l~~~  112 (142)
T cd02950          89 -EEGQSIGLQPKQVLAQNLDALVAG  112 (142)
T ss_pred             -EEEEEeCCCCHHHHHHHHHHHHcC
Confidence             555555888899999999988853

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PTZ00062 glutaredoxin; Provisional

Probab=99.77  E-value=6.9e-18  Score=137.08  Aligned_cols=118  Identities=13%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             cChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe
Q 027830           33 GRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG  112 (218)
Q Consensus        33 ~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~  112 (218)
                      .+.+++.+.+.. ..+.++++|||+||++|+.+.+++.+|+++|+++.|++||.+        |+|.++|||+||++|+ 
T Consensus         4 ~~~ee~~~~i~~-~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~-   73 (204)
T PTZ00062          4 IKKEEKDKLIES-NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ-   73 (204)
T ss_pred             CCHHHHHHHHhc-CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-
Confidence            567788888753 337789999999999999999999999999999999999987        9999999999999987 


Q ss_pred             eEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCCceeeeCC
Q 027830          113 RVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTP  167 (218)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~v~~y~p  167 (218)
                      .+.++  .+.+...|..++.++......     ....+.+..++.++++|+|.++
T Consensus        74 ~i~r~--~G~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~li~~~~Vvvf~Kg  121 (204)
T PTZ00062         74 LINSL--EGCNTSTLVSFIRGWAQKGSS-----EDTVEKIERLIRNHKILLFMKG  121 (204)
T ss_pred             EEeee--eCCCHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHhcCCEEEEEcc
Confidence            34333  467899999999999864321     1234568889999999999995

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.77  E-value=4.6e-18  Score=139.73  Aligned_cols=125  Identities=18%  Similarity=0.238  Sum_probs=96.0

Q ss_pred             CCCeEEEEEEC---CCChhHHhHHHHHHHHHHHCCCc--EEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeE-EEEec
Q 027830           46 GDKLVVVDFFS---PGCGGCKALHPKICQLAEMNPDV--QFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV-CSFSC  119 (218)
Q Consensus        46 ~~k~vlV~Fya---~wC~~C~~~~p~l~~la~~~~~v--~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~-~~~~~  119 (218)
                      .+...++.|++   +||++|+.+.|.++++++.++++  .++.+|.+++++++++|+|.++||+++|++|+ .+ ..+. 
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~-   95 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYT-   95 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEe-
Confidence            35566777888   99999999999999999999764  56677777999999999999999999999986 33 3455 


Q ss_pred             CccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830          120 TNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       120 g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      |..+.++|.+||+..++..   +....++....+.+.....   +.+|+++||..|+.+
T Consensus        96 G~~~~~~l~~~i~~~~~~~---~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~  151 (215)
T TIGR02187        96 GIPAGYEFAALIEDIVRVS---QGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYA  151 (215)
T ss_pred             ecCCHHHHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHH
Confidence            7888899999999886432   1234555554444433222   666999999999874

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.77  E-value=8e-18  Score=121.26  Aligned_cols=92  Identities=17%  Similarity=0.437  Sum_probs=79.7

Q ss_pred             HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEE
Q 027830           38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS  116 (218)
Q Consensus        38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~  116 (218)
                      +...+.+ .+++++++||++||+.|+.+.+.++++++++.+ +.++.+|++++++++.+++|.++||+++|++|+  ++.
T Consensus         5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~--~v~   81 (97)
T cd02949           5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE--LVK   81 (97)
T ss_pred             HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe--EEE
Confidence            3445554 789999999999999999999999999999875 999999999999999999999999999998875  444


Q ss_pred             EecCccCHHHHHHHHH
Q 027830          117 FSCTNATIKKFKDALA  132 (218)
Q Consensus       117 ~~~g~~~~~~l~~~l~  132 (218)
                      ...|..+.++|.++|+
T Consensus        82 ~~~g~~~~~~~~~~l~   97 (97)
T cd02949          82 EISGVKMKSEYREFIE   97 (97)
T ss_pred             EEeCCccHHHHHHhhC
Confidence            4448889999998874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.2e-18  Score=153.01  Aligned_cols=129  Identities=22%  Similarity=0.349  Sum_probs=112.1

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccC
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNAT  123 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~  123 (218)
                      ..++.++|.||++||++|+.+.|.|.+++..+.+ +.++.|||+.+..+|..|+|+++||+.+|..| ...+.+. |..+
T Consensus        45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~-~~~~  122 (383)
T KOG0191|consen   45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYS-GPRN  122 (383)
T ss_pred             ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-Cceeecc-Cccc
Confidence            3688999999999999999999999999999887 99999999999999999999999999999988 4677777 7999


Q ss_pred             HHHHHHHHHhhCCCCC--CCCC-CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830          124 IKKFKDALAKHTPDRC--GLGP-TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       124 ~~~l~~~l~~~~~~~~--~~~~-~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      .+.+.+|+...+....  ..+. +..++..++...+.+.+   ++.||+|||.+|...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l  180 (383)
T KOG0191|consen  123 AESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKL  180 (383)
T ss_pred             HHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhc
Confidence            9999999988885543  2344 66778888887655554   999999999998875

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.76  E-value=8.8e-18  Score=151.07  Aligned_cols=112  Identities=14%  Similarity=0.262  Sum_probs=91.6

Q ss_pred             Cccc-ccCcEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcH-HHH-HH
Q 027830           22 SPLV-HRLALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK-SMC-YS   95 (218)
Q Consensus        22 ~~l~-~~~v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~-~l~-~~   95 (218)
                      ..+. +..+++++. ++|.+.+. .+.++++||+|||+||++|+.+.|.|++++++|.+  +.|+.||++.+. .++ ++
T Consensus       345 ~dl~~~~~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~  423 (463)
T TIGR00424       345 ADIFDSNNVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQE  423 (463)
T ss_pred             ccccCCCCeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHH
Confidence            3444 345666655 47888875 55799999999999999999999999999999864  899999998763 444 78


Q ss_pred             CCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830           96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus        96 ~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                      |+|.++||++||++|..+.+.|..|.++.+.|..||+..
T Consensus       424 ~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       424 LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            999999999999998655666764689999999999753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.76  E-value=6.4e-18  Score=120.48  Aligned_cols=94  Identities=22%  Similarity=0.445  Sum_probs=80.6

Q ss_pred             hhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC---CCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830           35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        35 ~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~---~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      .++|.+.+.+  +++++|+||++||++|+.+.+.|.++++.+   .++.|+.+|++++..++++|+|.++||+++|.++.
T Consensus         5 ~~~~~~~i~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~   82 (101)
T cd02961           5 DDNFDELVKD--SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS   82 (101)
T ss_pred             HHHHHHHHhC--CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence            3578888755  559999999999999999999999999988   34999999999999999999999999999998873


Q ss_pred             eeEEEEecCccCHHHHHHHH
Q 027830          112 GRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       112 ~~~~~~~~g~~~~~~l~~~l  131 (218)
                      .....+. |..+.++|.+|+
T Consensus        83 ~~~~~~~-g~~~~~~i~~~~  101 (101)
T cd02961          83 KEPVKYE-GPRTLESLVEFI  101 (101)
T ss_pred             cccccCC-CCcCHHHHHhhC
Confidence            2455555 778899988874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PLN02309 5'-adenylylsulfate reductase

Probab=99.76  E-value=1.1e-17  Score=150.46  Aligned_cols=111  Identities=14%  Similarity=0.268  Sum_probs=93.0

Q ss_pred             cccc-cCcEEecChhhHHHHHH-hcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc-CcHHHHH-HC
Q 027830           23 PLVH-RLALELGRHKDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE-EHKSMCY-SL   96 (218)
Q Consensus        23 ~l~~-~~v~~i~s~~~~~~~l~-~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~-~~~~l~~-~~   96 (218)
                      .+.. .++++++. ++|.+.+. .+.++++||+|||+||++|+.+.|.|.++++.+.+  +.|++||++ .+..+++ +|
T Consensus       340 dl~~~~~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~  418 (457)
T PLN02309        340 DIFNSQNVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQEL  418 (457)
T ss_pred             cccCCCCcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhC
Confidence            3444 45666665 57877764 45799999999999999999999999999999854  999999999 7788886 59


Q ss_pred             CCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830           97 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus        97 ~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                      +|.++|||+||++|....+.|..+.++.+.|+.||+..
T Consensus       419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            99999999999988756677764679999999999864

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.76  E-value=1.8e-18  Score=144.90  Aligned_cols=121  Identities=16%  Similarity=0.286  Sum_probs=96.5

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC----cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecC
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT  120 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~----v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g  120 (218)
                      ..+..|+|+||||||.||+++.|+|.++.-.+.+    +++.++||+..+.++.+|+|++||||.||++|.  .+.|+ |
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~--a~dYR-G  117 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH--AIDYR-G  117 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe--eeecC-C
Confidence            3577999999999999999999999999877654    899999999999999999999999999999876  78888 9


Q ss_pred             ccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCCceeeeCCCCCC
Q 027830          121 NATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHP  171 (218)
Q Consensus       121 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~v~~y~p~~~~  171 (218)
                      +++.+.|++|..+..+.-....+   ...-+++.+.+.+...|.|-+..+.
T Consensus       118 ~R~Kd~iieFAhR~a~aiI~pi~---enQ~~fehlq~Rhq~ffVf~Gtge~  165 (468)
T KOG4277|consen  118 GREKDAIIEFAHRCAAAIIEPIN---ENQIEFEHLQARHQPFFVFFGTGEG  165 (468)
T ss_pred             CccHHHHHHHHHhcccceeeecC---hhHHHHHHHhhccCceEEEEeCCCC
Confidence            99999999999998865432221   1233566666666644444443343

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.75  E-value=4.2e-17  Score=146.85  Aligned_cols=130  Identities=20%  Similarity=0.375  Sum_probs=104.2

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      +..++ .++|.+.+.  .+++++|+|||+||++|+++.|.|.++++.+.    ++.|+.|||+.+.++|++|+|.++||+
T Consensus         3 v~~l~-~~~~~~~i~--~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~   79 (462)
T TIGR01130         3 VLVLT-KDNFDDFIK--SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTL   79 (462)
T ss_pred             ceECC-HHHHHHHHh--cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEE
Confidence            45554 457888774  47899999999999999999999999888653    399999999999999999999999999


Q ss_pred             EEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCC-CHHHHHHHHhCCC--ceeeeCC
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGL-EEKELLALAANKD--LSFNYTP  167 (218)
Q Consensus       105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~--~v~~y~p  167 (218)
                      ++|++|+..+..+. |.++.+.|.+||.+.++..     +..+ +.+++..+.....  +++|+..
T Consensus        80 ~~~~~g~~~~~~~~-g~~~~~~l~~~i~~~~~~~-----~~~i~~~~~~~~~~~~~~~~vi~~~~~  139 (462)
T TIGR01130        80 KIFRNGEDSVSDYN-GPRDADGIVKYMKKQSGPA-----VKEIETVADLEAFLADDDVVVIGFFKD  139 (462)
T ss_pred             EEEeCCccceeEec-CCCCHHHHHHHHHHhcCCC-----ceeecCHHHHHHHHhcCCcEEEEEECC
Confidence            99998862246665 8999999999999998633     2333 4677887777655  5555554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.74  E-value=1e-17  Score=124.25  Aligned_cols=99  Identities=12%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEEC--CCCh---hHHhHHHHHHHHHHHCCCcEEEEEeC-----cCcHHHHHHCCC
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFS--PGCG---GCKALHPKICQLAEMNPDVQFLQVNY-----EEHKSMCYSLNV   98 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya--~wC~---~C~~~~p~l~~la~~~~~v~~~~Vd~-----~~~~~l~~~~~I   98 (218)
                      ++.+++ ++|.+.|.  +++.+||.|||  |||+   +|+.+.|.+.+.+..   |.+++|||     .++.+||++|+|
T Consensus         3 ~v~L~~-~nF~~~v~--~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           3 CVDLDT-VTFYKVIP--KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             eeECCh-hhHHHHHh--cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCC
Confidence            344544 47888884  58899999999  9999   888888888766543   89999999     467889999999


Q ss_pred             C--cCCEEEEEeCCC-eeEEEEecCc-cCHHHHHHHHHhh
Q 027830           99 H--VLPFFRFYRGAH-GRVCSFSCTN-ATIKKFKDALAKH  134 (218)
Q Consensus        99 ~--~~Pti~l~~~g~-~~~~~~~~g~-~~~~~l~~~l~~~  134 (218)
                      +  ++||++||++|. .....|. |. ++.+.|.+||.++
T Consensus        77 ~~~gyPTl~lF~~g~~~~~~~Y~-G~~r~~~~lv~~v~~~  115 (116)
T cd03007          77 DKESYPVIYLFHGGDFENPVPYS-GADVTVDALQRFLKGN  115 (116)
T ss_pred             CcCCCCEEEEEeCCCcCCCccCC-CCcccHHHHHHHHHhc
Confidence            9  999999999884 2356677 75 9999999999876

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.74  E-value=2.4e-17  Score=122.35  Aligned_cols=96  Identities=14%  Similarity=0.183  Sum_probs=80.3

Q ss_pred             HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCee-EEE
Q 027830           38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR-VCS  116 (218)
Q Consensus        38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~-~~~  116 (218)
                      +.+.+.  .++.++|+||++||++|+.+.|.++++++.++.+.|..||++++++++.+|+|.++||+++|++|... ...
T Consensus        15 ~~~~l~--~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~   92 (113)
T cd02975          15 FFKEMK--NPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR   92 (113)
T ss_pred             HHHHhC--CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence            445553  47779999999999999999999999999887799999999999999999999999999999876411 124


Q ss_pred             EecCccCHHHHHHHHHhhCC
Q 027830          117 FSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       117 ~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +. |..+..+|.++|+..+.
T Consensus        93 ~~-G~~~~~el~~~i~~i~~  111 (113)
T cd02975          93 YY-GLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EE-ecCchHHHHHHHHHHHh
Confidence            44 77788899999987653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.74  E-value=3.8e-17  Score=131.97  Aligned_cols=104  Identities=24%  Similarity=0.351  Sum_probs=82.1

Q ss_pred             cccCcEEecChhhHHHHHHhc-CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCE
Q 027830           25 VHRLALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  103 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~-~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pt  103 (218)
                      ....+.+|+. ++|...+... .+.+|||+||++||++|+.+.|.|.+|+.+|++++|++||++..   +..|+|.++||
T Consensus        80 ~~G~v~eis~-~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPT  155 (192)
T cd02988          80 KFGEVYEISK-PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPT  155 (192)
T ss_pred             CCCeEEEeCH-HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCE
Confidence            4577888865 5666666543 35699999999999999999999999999999999999999854   58999999999


Q ss_pred             EEEEeCCCeeEEEEe------cCccCHHHHHHHHHh
Q 027830          104 FRFYRGAHGRVCSFS------CTNATIKKFKDALAK  133 (218)
Q Consensus       104 i~l~~~g~~~~~~~~------~g~~~~~~l~~~l~~  133 (218)
                      +++|++|+ .+..+.      +...+.++|..+|.+
T Consensus       156 lliyk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         156 ILVYRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEEECCE-EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            99999997 222222      115667777777654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.72  E-value=5.7e-17  Score=145.97  Aligned_cols=128  Identities=25%  Similarity=0.389  Sum_probs=104.8

Q ss_pred             hhhhhhcCCCCCCCCCCCCcccccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC----c
Q 027830            4 ELFFKKIKPSPREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----V   79 (218)
Q Consensus         4 ~~~~~~~~~~~~~~~~p~~~l~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~----v   79 (218)
                      +++.|++++..+++++|..  ....+..+.. ++|.+.+.+ .++.++|+|||+||++|+.+.|.++++++.+.+    +
T Consensus       325 ~~~~g~~~~~~~se~~p~~--~~~~v~~l~~-~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i  400 (462)
T TIGR01130       325 DFLDGKLKPYLKSEPIPED--DEGPVKVLVG-KNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDV  400 (462)
T ss_pred             HHhcCCCCeeeccCCCCcc--CCCccEEeeC-cCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcE
Confidence            4568889999999999865  3355666654 467777654 689999999999999999999999999998754    8


Q ss_pred             EEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCe-eEEEEecCccCHHHHHHHHHhhCCCC
Q 027830           80 QFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus        80 ~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~-~~~~~~~g~~~~~~l~~~l~~~~~~~  138 (218)
                      .|+++|++.+. +.. ++|.++||+++|++|+. ....+. |..+.+.|.+||.++....
T Consensus       401 ~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~  457 (462)
T TIGR01130       401 VIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYD-GDRTLEDFSKFIAKHATFP  457 (462)
T ss_pred             EEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEec-CcCCHHHHHHHHHhcCCCC
Confidence            99999999875 334 99999999999998863 235555 8899999999999998644

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.72  E-value=1.2e-16  Score=111.72  Aligned_cols=91  Identities=31%  Similarity=0.579  Sum_probs=79.0

Q ss_pred             hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEE
Q 027830           37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS  116 (218)
Q Consensus        37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~  116 (218)
                      +|...+..  +++++|+||++||++|+.+.+.+.++++..+++.|+.+|++.+..+++.|++.++|++++|.+|+ .+..
T Consensus         2 ~~~~~~~~--~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~   78 (93)
T cd02947           2 EFEELIKS--AKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR   78 (93)
T ss_pred             chHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence            45666654  48999999999999999999999999998777999999999999999999999999999998885 3444


Q ss_pred             EecCccCHHHHHHHH
Q 027830          117 FSCTNATIKKFKDAL  131 (218)
Q Consensus       117 ~~~g~~~~~~l~~~l  131 (218)
                      +. |..+.+.|.++|
T Consensus        79 ~~-g~~~~~~l~~~i   92 (93)
T cd02947          79 VV-GADPKEELEEFL   92 (93)
T ss_pred             Ee-cCCCHHHHHHHh
Confidence            44 778889998887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.71  E-value=1e-16  Score=119.74  Aligned_cols=97  Identities=12%  Similarity=0.264  Sum_probs=80.5

Q ss_pred             EecChhhHHHHHHhcCCCeEEEEEEC-------CCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcC-------cHHHHHH
Q 027830           31 ELGRHKDLVESLWHAGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS   95 (218)
Q Consensus        31 ~i~s~~~~~~~l~~~~~k~vlV~Fya-------~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~-------~~~l~~~   95 (218)
                      .+.+.++|.+.+...++++++|+|||       +||++|+.+.|.+++++++++ ++.|++||+++       +..+..+
T Consensus         5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~   84 (119)
T cd02952           5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD   84 (119)
T ss_pred             cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence            46778899999987668899999999       999999999999999999998 59999999976       4689999


Q ss_pred             CCCC-cCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830           96 LNVH-VLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus        96 ~~I~-~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      |+|. ++||+++|++|+ +++...+.  +.+.+..|
T Consensus        85 ~~I~~~iPT~~~~~~~~-~l~~~~c~--~~~~~~~~  117 (119)
T cd02952          85 PKLTTGVPTLLRWKTPQ-RLVEDECL--QADLVEMF  117 (119)
T ss_pred             cCcccCCCEEEEEcCCc-eecchhhc--CHHHHHHh
Confidence            9999 999999997774 66665543  34444443

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.71  E-value=2e-16  Score=143.62  Aligned_cols=107  Identities=21%  Similarity=0.373  Sum_probs=91.2

Q ss_pred             ccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC----CCcEEEEEeCcCcHHHHHHCCCCcC
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVL  101 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~----~~v~~~~Vd~~~~~~l~~~~~I~~~  101 (218)
                      ...+..++. ++|...+.  .++.++|+|||+||++|+++.|.|.++++.+    .++.|+.|||+.+..+|++|+|.++
T Consensus        31 ~~~v~~l~~-~~f~~~i~--~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~  107 (477)
T PTZ00102         31 SEHVTVLTD-STFDKFIT--ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGY  107 (477)
T ss_pred             CCCcEEcch-hhHHHHHh--cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcc
Confidence            345667754 47877774  4789999999999999999999999988764    3499999999999999999999999


Q ss_pred             CEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830          102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       102 Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~  138 (218)
                      ||+++|++|+ .+ .+. |.++.+.|.+||.++++..
T Consensus       108 Pt~~~~~~g~-~~-~y~-g~~~~~~l~~~l~~~~~~~  141 (477)
T PTZ00102        108 PTIKFFNKGN-PV-NYS-GGRTADGIVSWIKKLTGPA  141 (477)
T ss_pred             cEEEEEECCc-eE-Eec-CCCCHHHHHHHHHHhhCCC
Confidence            9999999986 33 565 8999999999999998644

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.71  E-value=1.7e-16  Score=119.40  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=78.5

Q ss_pred             hhHHHHHHhcCC-CeEEEEEECCCChhHHhHHHHHH---HHHHHCC-CcEEEEEeCcCc-------------HHHHHHCC
Q 027830           36 KDLVESLWHAGD-KLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEEH-------------KSMCYSLN   97 (218)
Q Consensus        36 ~~~~~~l~~~~~-k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~-~v~~~~Vd~~~~-------------~~l~~~~~   97 (218)
                      +++.+...  .+ ++++|+|||+||++|+.+.+.+.   .+.+.+. ++.++.||++.+             ..++.+|+
T Consensus         4 ~~~~~a~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~   81 (125)
T cd02951           4 EDLAEAAA--DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR   81 (125)
T ss_pred             HHHHHHHH--cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence            45566664  47 89999999999999999999885   5555554 488999998864             68999999


Q ss_pred             CCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830           98 VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus        98 I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      |.++||++||+++.|+++....|..+.+.+..+|+..+.
T Consensus        82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            999999999976512455555588889999999988764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.70  E-value=2.5e-16  Score=118.43  Aligned_cols=94  Identities=13%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             ChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----------HHHHHCC----C
Q 027830           34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------SMCYSLN----V   98 (218)
Q Consensus        34 s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----------~l~~~~~----I   98 (218)
                      +.+++.+.+.  +++.++|+||++||++|+.+.|.|.+++++ .++.|+.||++.+.           ++.++|+    |
T Consensus        12 t~~~~~~~i~--~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i   88 (122)
T TIGR01295        12 TVVRALEALD--KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF   88 (122)
T ss_pred             CHHHHHHHHH--cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC
Confidence            4457888885  488899999999999999999999999998 45778888887542           4556665    4


Q ss_pred             CcCCEEEEEeCCCeeEEEEecC-ccCHHHHHHHHH
Q 027830           99 HVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDALA  132 (218)
Q Consensus        99 ~~~Pti~l~~~g~~~~~~~~~g-~~~~~~l~~~l~  132 (218)
                      .++||+++|++|+  .+....| ..+.++|.+|+.
T Consensus        89 ~~~PT~v~~k~Gk--~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        89 MGTPTFVHITDGK--QVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCCCEEEEEeCCe--EEEEEeCCCCCHHHHHHHhh
Confidence            5699999999996  3444446 567999998874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.70  E-value=1.4e-16  Score=118.43  Aligned_cols=82  Identities=22%  Similarity=0.417  Sum_probs=69.4

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---C-cEEEEEeCc--CcHHHHHHCCCCcC
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---D-VQFLQVNYE--EHKSMCYSLNVHVL  101 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~-v~~~~Vd~~--~~~~l~~~~~I~~~  101 (218)
                      ++++++ .++|.+.+.+ .+++++|+|||+||++|+.+.|.|+++++.+.   + +.|+.+||+  .+..++++|+|+++
T Consensus         2 ~v~~l~-~~~f~~~i~~-~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~   79 (114)
T cd02992           2 PVIVLD-AASFNSALLG-SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGY   79 (114)
T ss_pred             CeEECC-HHhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCC
Confidence            345554 4578888765 45899999999999999999999999998764   3 899999985  46789999999999


Q ss_pred             CEEEEEeCCC
Q 027830          102 PFFRFYRGAH  111 (218)
Q Consensus       102 Pti~l~~~g~  111 (218)
                      ||+++|++|.
T Consensus        80 Pt~~lf~~~~   89 (114)
T cd02992          80 PTLRYFPPFS   89 (114)
T ss_pred             CEEEEECCCC
Confidence            9999998886

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.65  E-value=1.2e-15  Score=110.41  Aligned_cols=88  Identities=13%  Similarity=0.202  Sum_probs=76.8

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCC--cCCEEEEEeCCCeeEEEEecCccC
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVH--VLPFFRFYRGAHGRVCSFSCTNAT  123 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~--~~Pti~l~~~g~~~~~~~~~g~~~  123 (218)
                      ++++++.||++||++|+.+.+.+++++++|.+ +.|+.||+++++.++..|+|.  ++|++++|++++++...+..+..+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~   91 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT   91 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence            68999999999999999999999999999976 999999999999999999999  999999999843223444434458


Q ss_pred             HHHHHHHHHhh
Q 027830          124 IKKFKDALAKH  134 (218)
Q Consensus       124 ~~~l~~~l~~~  134 (218)
                      .+.|.+||.+.
T Consensus        92 ~~~l~~fi~~~  102 (103)
T cd02982          92 AESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.64  E-value=7.6e-16  Score=129.12  Aligned_cols=99  Identities=16%  Similarity=0.344  Sum_probs=85.6

Q ss_pred             hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHH----CCC--cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCC
Q 027830           37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  110 (218)
Q Consensus        37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~----~~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g  110 (218)
                      ++..++  .+..+|+|.|||+||+.++.++|+|++.++.    +|+  +.+++|||+++..++.+|.|..|||+.+|.+|
T Consensus         5 N~~~il--~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG   82 (375)
T KOG0912|consen    5 NIDSIL--DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNG   82 (375)
T ss_pred             cHHHhh--ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeecc
Confidence            444555  3488999999999999999999999988774    564  99999999999999999999999999999999


Q ss_pred             CeeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830          111 HGRVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       111 ~~~~~~~~~g~~~~~~l~~~l~~~~~~~  138 (218)
                      .--..+|+ |.++.+.|.+||++++...
T Consensus        83 ~~~~rEYR-g~RsVeaL~efi~kq~s~~  109 (375)
T KOG0912|consen   83 EMMKREYR-GQRSVEALIEFIEKQLSDP  109 (375)
T ss_pred             chhhhhhc-cchhHHHHHHHHHHHhccH
Confidence            73233566 9999999999999999754

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.62  E-value=7.6e-15  Score=101.86  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             EEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHH
Q 027830           50 VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK  128 (218)
Q Consensus        50 vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~  128 (218)
                      .+..||++||++|+.+.+.++++++.++. +.++.||++++++++++|++.++||+++  +|+   ..+. |..+.++|.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~-G~~~~~~l~   75 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFI-GAPTKEELV   75 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEe-cCCCHHHHH
Confidence            46789999999999999999999998864 9999999999999999999999999985  654   2344 778899999


Q ss_pred             HHHHhh
Q 027830          129 DALAKH  134 (218)
Q Consensus       129 ~~l~~~  134 (218)
                      ++|.+.
T Consensus        76 ~~l~~~   81 (82)
T TIGR00411        76 EAIKKR   81 (82)
T ss_pred             HHHHhh
Confidence            998865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.58  E-value=1.6e-14  Score=134.09  Aligned_cols=109  Identities=18%  Similarity=0.229  Sum_probs=89.2

Q ss_pred             ccCcEEecChhhHHHHHHh--cCCCeEEEEEECCCChhHHhHHHHH---HHHHHHCCCcEEEEEeCcC----cHHHHHHC
Q 027830           26 HRLALELGRHKDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYEE----HKSMCYSL   96 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~--~~~k~vlV~Fya~wC~~C~~~~p~l---~~la~~~~~v~~~~Vd~~~----~~~l~~~~   96 (218)
                      +.....+.+.+++++.+..  ..+|+|+|+|||+||++|+.+.+.+   .++.+.++++.++++|+++    +.+++++|
T Consensus       451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~  530 (571)
T PRK00293        451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY  530 (571)
T ss_pred             CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence            3467888999999888863  3478999999999999999998875   6788888889999999985    36889999


Q ss_pred             CCCcCCEEEEEe-CCCeeE-EEEecCccCHHHHHHHHHhhC
Q 027830           97 NVHVLPFFRFYR-GAHGRV-CSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        97 ~I~~~Pti~l~~-~g~~~~-~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      +|.++||+++|+ +|+ .+ .....|..+.+++.++|++..
T Consensus       531 ~v~g~Pt~~~~~~~G~-~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        531 NVLGLPTILFFDAQGQ-EIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             CCCCCCEEEEECCCCC-CcccccccCCCCHHHHHHHHHHhc
Confidence            999999999996 554 22 233348899999999998754

>TIGR02740 TraF-like TraF-like protein

Probab=99.56  E-value=7.6e-14  Score=118.46  Aligned_cols=96  Identities=11%  Similarity=0.191  Sum_probs=78.7

Q ss_pred             HHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-----------cHHHHHHCCCCcCCEEEEEe
Q 027830           40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        40 ~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-----------~~~l~~~~~I~~~Pti~l~~  108 (218)
                      ..+.+..++++||+||++||++|+.+.|.|.+++++|. +.++.|+++.           +..++++|||.++||+++++
T Consensus       159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~  237 (271)
T TIGR02740       159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD  237 (271)
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence            34444568999999999999999999999999999985 6676666654           35789999999999999998


Q ss_pred             CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      ++.+++.....|..+.++|.+.|.....
T Consensus       238 ~~~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       238 PDPNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            7334565555588999999999988765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.55  E-value=9e-15  Score=109.17  Aligned_cols=89  Identities=25%  Similarity=0.359  Sum_probs=65.6

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcH-HHHHHCCCCc--CCEEEEEe-CCCeeEEE---
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHK-SMCYSLNVHV--LPFFRFYR-GAHGRVCS---  116 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~-~l~~~~~I~~--~Pti~l~~-~g~~~~~~---  116 (218)
                      ..++++||+|||+||++|+.+.|.+.+....+. +..|+.||++.+. .....|++.+  +||++||. +|+  +..   
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk--~~~~~~   94 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD--VHPEII   94 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC--Cchhhc
Confidence            468999999999999999999999998766432 3566666666553 3457899986  99999996 665  322   


Q ss_pred             EecCccCHHHHHHHHHhhC
Q 027830          117 FSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       117 ~~~g~~~~~~l~~~l~~~~  135 (218)
                      ...|..+.+.+.+.|....
T Consensus        95 ~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          95 NKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             cCCCCccccccCCCHHHHH
Confidence            2337777777777666554

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.53  E-value=9.9e-14  Score=113.98  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             HHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830           39 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        39 ~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~  118 (218)
                      .+.+....+..+++.||++||++|+.+.+.+++++..++++.+..||.+.+++++.+|+|.++||++++++|. +   +.
T Consensus       125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-~---~~  200 (215)
T TIGR02187       125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-E---FV  200 (215)
T ss_pred             HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-E---EE
Confidence            3444432344455569999999999999999999999888999999999999999999999999999997664 2   44


Q ss_pred             cCccCHHHHHHHHHh
Q 027830          119 CTNATIKKFKDALAK  133 (218)
Q Consensus       119 ~g~~~~~~l~~~l~~  133 (218)
                       |....++|.++|.+
T Consensus       201 -G~~~~~~l~~~l~~  214 (215)
T TIGR02187       201 -GAYPEEQFLEYILS  214 (215)
T ss_pred             -CCCCHHHHHHHHHh
Confidence             78889999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PHA02125 thioredoxin-like protein

Probab=99.52  E-value=1.4e-13  Score=94.61  Aligned_cols=72  Identities=17%  Similarity=0.383  Sum_probs=57.1

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      +++|||+||++|+.+.|.|.++.     +.++.||++++.+++++|+|.++||++   +|+ .+..+.....+..+|++.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l~~~   72 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAELKEK   72 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHHHHH
Confidence            78999999999999999998763     578999999999999999999999997   453 344444224556666655


Q ss_pred             H
Q 027830          131 L  131 (218)
Q Consensus       131 l  131 (218)
                      |
T Consensus        73 ~   73 (75)
T PHA02125         73 L   73 (75)
T ss_pred             h
Confidence            4

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.52  E-value=2e-13  Score=106.51  Aligned_cols=88  Identities=9%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc------------HHHH-HHC---CCCcCCEEEEEeCC
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH------------KSMC-YSL---NVHVLPFFRFYRGA  110 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~------------~~l~-~~~---~I~~~Pti~l~~~g  110 (218)
                      ++..+|+|||+||++|++..|.+++++++| ++.++.|+.+..            .... ..|   ++.++||.++++..
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~  128 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN  128 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence            566799999999999999999999999998 466666666532            2333 345   88999999999654


Q ss_pred             CeeEEEEecCccCHHHHHHHHHhhC
Q 027830          111 HGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       111 ~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      .+.+.....|..+.+++.+.|.+.+
T Consensus       129 G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       129 TRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CCEEEEEeecccCHHHHHHHHHHhC
Confidence            2334444458999999999887653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.1e-13  Score=123.05  Aligned_cols=144  Identities=21%  Similarity=0.291  Sum_probs=106.2

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      .+.+++.. +|...+.+ .+..++|.||+|||++|+.+.|.|++++..+.   ++.++.+|++.+..++..++|+++||+
T Consensus       145 ~v~~l~~~-~~~~~~~~-~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~  222 (383)
T KOG0191|consen  145 EVFELTKD-NFDETVKD-SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTL  222 (383)
T ss_pred             ceEEcccc-chhhhhhc-cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceE
Confidence            35555554 45555543 68899999999999999999999999999774   399999999999999999999999999


Q ss_pred             EEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHH------------HHHHH-HhCCCceeeeCCCCCC
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEK------------ELLAL-AANKDLSFNYTPKPHP  171 (218)
Q Consensus       105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~------------~l~~~-~~~~~~v~~y~p~~~~  171 (218)
                      ++|.+|.. ...+..+.++.+.++.|+++..+.......+......            .+... .....++.+|++|+.+
T Consensus       223 ~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T KOG0191|consen  223 KLFPPGEE-DIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGH  301 (383)
T ss_pred             EEecCCCc-ccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhc
Confidence            99998863 3444558999999999999988763111111111111            11111 2223489999999999


Q ss_pred             CCC
Q 027830          172 MPA  174 (218)
Q Consensus       172 ~p~  174 (218)
                      +..
T Consensus       302 ~~~  304 (383)
T KOG0191|consen  302 CGG  304 (383)
T ss_pred             ccc
Confidence            643

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.46  E-value=5.1e-13  Score=92.13  Aligned_cols=72  Identities=14%  Similarity=0.259  Sum_probs=57.4

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecC-ccCHHHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFK  128 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g-~~~~~~l~  128 (218)
                      .|.||++||++|+.+.|.+++++++++. +.|++||   +.+.+.+|++.++||+++  +|+  .. +. | ..+.++|.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~--~~-~~-G~~~~~~~l~   72 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE--LV-IM-GKIPSKEEIK   72 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE--EE-EE-eccCCHHHHH
Confidence            3789999999999999999999999875 8888887   344578899999999998  764  33 44 4 34557777


Q ss_pred             HHH
Q 027830          129 DAL  131 (218)
Q Consensus       129 ~~l  131 (218)
                      ++|
T Consensus        73 ~~l   75 (76)
T TIGR00412        73 EIL   75 (76)
T ss_pred             HHh
Confidence            765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.45  E-value=3.4e-13  Score=99.03  Aligned_cols=85  Identities=22%  Similarity=0.289  Sum_probs=61.5

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHHHHH---HHHCC-CcEEEEEeCcCc--------------------HHHHHHCCCCc
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQL---AEMNP-DVQFLQVNYEEH--------------------KSMCYSLNVHV  100 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~l---a~~~~-~v~~~~Vd~~~~--------------------~~l~~~~~I~~  100 (218)
                      .++++++++||++||++|+.+.+.+.+.   ...+. ++.++.++++..                    .++++.|+|++
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            4689999999999999999999999864   44443 478888887643                    35889999999


Q ss_pred             CCEEEEEe-CCCeeEEEEecCccCHHHHHHHH
Q 027830          101 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       101 ~Pti~l~~-~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      +||+++++ +|  +++....|..+.++|.++|
T Consensus        83 tPt~~~~d~~G--~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDG--KIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTS--CEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCC--CEEEEecCCCCHHHHHhhC
Confidence            99999995 44  3444344999999998875

...

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.45  E-value=1.2e-12  Score=105.08  Aligned_cols=88  Identities=17%  Similarity=0.293  Sum_probs=69.8

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----------------------HHHHHCCCCcCC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------------------SMCYSLNVHVLP  102 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----------------------~l~~~~~I~~~P  102 (218)
                      .+++++|+|||+||++|++..|.+.++.++  ++.++.|+.+++.                       .++..|++.++|
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P  144 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  144 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence            589999999999999999999999999764  6888888865432                       244578999999


Q ss_pred             EEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       103 ti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +.++++.. |++.....|..+.+++.++|+..+.
T Consensus       145 ~t~vid~~-G~i~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        145 ETFLIDGN-GIIRYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             eEEEECCC-ceEEEEEecCCCHHHHHHHHHHHHH
Confidence            88877533 3566666688999999998887763

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.44  E-value=1e-12  Score=119.98  Aligned_cols=89  Identities=16%  Similarity=0.225  Sum_probs=72.8

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEe----------------------------CcCcHHHHHH
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVN----------------------------YEEHKSMCYS   95 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd----------------------------~~~~~~l~~~   95 (218)
                      ++|+|||+|||+||++|+.+.|.|.++.+++.  ++.|+.|.                            ++.+..+++.
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~  134 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS  134 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence            68999999999999999999999999999886  46665543                            3456678899


Q ss_pred             CCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830           96 LNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        96 ~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      |+|.++||++++..+ |+++....|..+.++|..+|+...
T Consensus       135 fgV~giPTt~IIDkd-GkIV~~~~G~~~~eeL~a~Ie~~~  173 (521)
T PRK14018        135 LNISVYPSWAIIGKD-GDVQRIVKGSISEAQALALIRNPN  173 (521)
T ss_pred             cCCCCcCeEEEEcCC-CeEEEEEeCCCCHHHHHHHHHHhh
Confidence            999999999877433 346666669999999999998443

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.42  E-value=7.2e-13  Score=88.70  Aligned_cols=59  Identities=19%  Similarity=0.350  Sum_probs=54.1

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.||++||++|+.+.+.+++++..++++.+..+|++++++++.+|++.++||+++  +|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~   61 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK   61 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence            67899999999999999999999888889999999999999999999999999854  553

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.42  E-value=1.7e-12  Score=97.79  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHH-HH--HHHHHC-CCcEEEEEeCcCcHHHHH--------HCCCCcCCE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-IC--QLAEMN-PDVQFLQVNYEEHKSMCY--------SLNVHVLPF  103 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~-l~--~la~~~-~~v~~~~Vd~~~~~~l~~--------~~~I~~~Pt  103 (218)
                      +.+....  ..+|+++|+|||+||+.|+.|... |.  ++++.. .++.++++|.++++++++        .|++.++||
T Consensus         6 eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt   83 (124)
T cd02955           6 EAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL   83 (124)
T ss_pred             HHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence            3444444  469999999999999999999863 32  555553 468999999998887765        358999999


Q ss_pred             EEEEeCC
Q 027830          104 FRFYRGA  110 (218)
Q Consensus       104 i~l~~~g  110 (218)
                      ++|+..+
T Consensus        84 ~vfl~~~   90 (124)
T cd02955          84 NVFLTPD   90 (124)
T ss_pred             EEEECCC
Confidence            9999654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.42  E-value=3e-12  Score=90.96  Aligned_cols=83  Identities=11%  Similarity=0.225  Sum_probs=67.5

Q ss_pred             HHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEec
Q 027830           40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSC  119 (218)
Q Consensus        40 ~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~  119 (218)
                      +.+.+-.+..-+..|+++||++|..+.+.++++++.++++.+..+|.++.++++.+|+|.++||+++  +|+  ... . 
T Consensus         5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~--~~~-~-   78 (89)
T cd03026           5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE--LFG-F-   78 (89)
T ss_pred             HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE--EEE-e-
Confidence            3333335667888999999999999999999999999999999999999999999999999999964  665  332 3 


Q ss_pred             CccCHHHHH
Q 027830          120 TNATIKKFK  128 (218)
Q Consensus       120 g~~~~~~l~  128 (218)
                      |..+.+++.
T Consensus        79 G~~~~~e~~   87 (89)
T cd03026          79 GRMTLEEIL   87 (89)
T ss_pred             CCCCHHHHh
Confidence            555656543

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.39  E-value=3.5e-12  Score=101.35  Aligned_cols=87  Identities=16%  Similarity=0.252  Sum_probs=68.6

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc-----------------------CcHHHHHHCCCCcCC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------------------EHKSMCYSLNVHVLP  102 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~-----------------------~~~~l~~~~~I~~~P  102 (218)
                      .+++++|+||++||++|+.+.|.++++.+.  ++.++.|+.+                       .+..+.+.|++.++|
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P  139 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence            589999999999999999999999999764  4666666642                       233566789999999


Q ss_pred             EEEEEe-CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          103 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       103 ti~l~~-~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +.++++ +|  ++.....|..+.+++.++|.+++.
T Consensus       140 ~~~~id~~G--~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       140 ETFLVDGNG--VILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eEEEEcCCc--eEEEEEeccCCHHHHHHHHHHHhh
Confidence            877774 54  455555588999999999988763

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.39  E-value=3.9e-12  Score=95.54  Aligned_cols=79  Identities=18%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeC-----------------------cCcHHHHHHCCCCcCC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVLP  102 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~-----------------------~~~~~l~~~~~I~~~P  102 (218)
                      .+++++|+||++||++|+.+.|.+.++.+.+ ++.++.|+.                       +.+..+++.|++.++|
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P  102 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP  102 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence            5889999999999999999999999999887 477776663                       4456788899999999


Q ss_pred             EEEEEe-CCCeeEEEEecCccCHHHH
Q 027830          103 FFRFYR-GAHGRVCSFSCTNATIKKF  127 (218)
Q Consensus       103 ti~l~~-~g~~~~~~~~~g~~~~~~l  127 (218)
                      +.+++. +|  ++.....|..+.+.|
T Consensus       103 ~~~~ld~~G--~v~~~~~G~~~~~~~  126 (127)
T cd03010         103 ETFLIDGDG--IIRYKHVGPLTPEVW  126 (127)
T ss_pred             eEEEECCCc--eEEEEEeccCChHhc
Confidence            777774 44  455554477766543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.39  E-value=5.9e-12  Score=99.30  Aligned_cols=88  Identities=22%  Similarity=0.321  Sum_probs=73.9

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcC----------------------cHHHHHHCCCCcC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------HKSMCYSLNVHVL  101 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~----------------------~~~l~~~~~I~~~  101 (218)
                      .+++++|+||++||++|+...+.+.++.+++++  +.++.|+++.                      +..+++.|+|.++
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            578999999999999999999999999998864  8888888753                      4577899999999


Q ss_pred             CEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830          102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus       102 Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                      |+++++..+ |++.....|..+.+++.+++++.
T Consensus       140 P~~~lid~~-g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        140 PTTFLIDKD-GKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CeEEEECCC-CcEEEEEeCCCCHHHHHHHHHHh
Confidence            999999644 35665555889999999998764

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.39  E-value=2.7e-12  Score=91.50  Aligned_cols=64  Identities=23%  Similarity=0.414  Sum_probs=53.5

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcCc-------------------------HHHHHHCCC
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH-------------------------KSMCYSLNV   98 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~~-------------------------~~l~~~~~I   98 (218)
                      +|+++|+|||+||++|+...|.+.++.++|+   ++.|+.|++++.                         ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            6899999999999999999999999999998   499998887642                         357788999


Q ss_pred             CcCCEEEEEeCC
Q 027830           99 HVLPFFRFYRGA  110 (218)
Q Consensus        99 ~~~Pti~l~~~g  110 (218)
                      .++|++++++.+
T Consensus        81 ~~iP~~~lld~~   92 (95)
T PF13905_consen   81 NGIPTLVLLDPD   92 (95)
T ss_dssp             TSSSEEEEEETT
T ss_pred             CcCCEEEEECCC
Confidence            999999999754

...

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.38  E-value=3.2e-12  Score=98.83  Aligned_cols=73  Identities=14%  Similarity=0.246  Sum_probs=57.4

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---------CcEEEEEeCcCc-------------------------H
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEH-------------------------K   90 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---------~v~~~~Vd~~~~-------------------------~   90 (218)
                      ..+|+++|+|||+||++|+.+.|.|.++.+++.         ++.++.|+.+.+                         .
T Consensus        23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~  102 (146)
T cd03008          23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR  102 (146)
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence            368999999999999999999999998776432         478888876532                         2


Q ss_pred             HHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830           91 SMCYSLNVHVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        91 ~l~~~~~I~~~Pti~l~~~g~~~~~~~~  118 (218)
                      .++..|++.++||.++++.. |+++...
T Consensus       103 ~l~~~y~v~~iPt~vlId~~-G~Vv~~~  129 (146)
T cd03008         103 ELEAQFSVEELPTVVVLKPD-GDVLAAN  129 (146)
T ss_pred             HHHHHcCCCCCCEEEEECCC-CcEEeeC
Confidence            46788999999999999643 4566543

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.36  E-value=3.5e-12  Score=96.79  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCc-------------------------HHHHHHC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH-------------------------KSMCYSL   96 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~-------------------------~~l~~~~   96 (218)
                      .+|+++|+||++||++|+.+.|.+.++.+++.    ++.++.|+++..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            58999999999999999999999999887654    467777776543                         2456779


Q ss_pred             CCCcCCEEEEEeCCCeeEEEE
Q 027830           97 NVHVLPFFRFYRGAHGRVCSF  117 (218)
Q Consensus        97 ~I~~~Pti~l~~~g~~~~~~~  117 (218)
                      +|.++|++++++.+ |+++..
T Consensus        96 ~v~~iPt~~lid~~-G~iv~~  115 (132)
T cd02964          96 KVEGIPTLVVLKPD-GDVVTT  115 (132)
T ss_pred             CCCCCCEEEEECCC-CCEEch
Confidence            99999999999643 345543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.36  E-value=4.6e-12  Score=95.75  Aligned_cols=70  Identities=17%  Similarity=0.393  Sum_probs=55.6

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC----CcEEEEEeCcCc------------------------HHHHHHCC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH------------------------KSMCYSLN   97 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~----~v~~~~Vd~~~~------------------------~~l~~~~~   97 (218)
                      .++++||+||++||++|+.+.|.+.++.+++.    ++.++.|+++..                        ..+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            58899999999999999999999998877653    467777766533                        35778999


Q ss_pred             CCcCCEEEEEeCCCeeEEE
Q 027830           98 VHVLPFFRFYRGAHGRVCS  116 (218)
Q Consensus        98 I~~~Pti~l~~~g~~~~~~  116 (218)
                      |.++|++++++.+ |+++.
T Consensus        97 v~~~P~~~lid~~-G~i~~  114 (131)
T cd03009          97 IEGIPTLIILDAD-GEVVT  114 (131)
T ss_pred             CCCCCEEEEECCC-CCEEc
Confidence            9999999999633 23543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.32  E-value=8.4e-12  Score=113.55  Aligned_cols=104  Identities=21%  Similarity=0.284  Sum_probs=86.3

Q ss_pred             EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHH---HHHHHCCCcEEEEEeCcCc----HHHHHHCCCCcCC
Q 027830           30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLP  102 (218)
Q Consensus        30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~~v~~~~Vd~~~~----~~l~~~~~I~~~P  102 (218)
                      ..+.+..++++.+.++.+|+|+|+|||+||-.||.+.+..-   +...+.+|+++.++|++++    .++.++||+-++|
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P  536 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP  536 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence            67777778999998877789999999999999999998764   5566678999999999864    4677899999999


Q ss_pred             EEEEEe-CCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830          103 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       103 ti~l~~-~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      ++++|. +|+ +... ..|..+.+.+.++|++..
T Consensus       537 ~~~ff~~~g~-e~~~-l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         537 TYLFFGPQGS-EPEI-LTGFLTADAFLEHLERAA  568 (569)
T ss_pred             EEEEECCCCC-cCcC-CcceecHHHHHHHHHHhc
Confidence            999997 444 3333 348999999999998753

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=9.3e-13  Score=118.79  Aligned_cols=107  Identities=20%  Similarity=0.360  Sum_probs=79.2

Q ss_pred             cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---C-cEEEEEeCc--CcHHHHHHCCCCc
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---D-VQFLQVNYE--EHKSMCYSLNVHV  100 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~-v~~~~Vd~~--~~~~l~~~~~I~~  100 (218)
                      .+++.++- +.|...+.. +.+..+|.||++||++|+++.|.|+++++...   . +.++.|||.  .|..+|++|+|.+
T Consensus        39 D~ii~Ld~-~tf~~~v~~-~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~  116 (606)
T KOG1731|consen   39 DPIIELDV-DTFNAAVFG-SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG  116 (606)
T ss_pred             CCeEEeeh-hhhHHHhcc-cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence            56666654 467777765 45789999999999999999999999998754   3 899999994  6889999999999


Q ss_pred             CCEEEEEeCCCee--EEEEecCccCHHHHHHHHHhhC
Q 027830          101 LPFFRFYRGAHGR--VCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       101 ~Pti~l~~~g~~~--~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      +|++++|..+..+  .-....|.....++.+.+.+.+
T Consensus       117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l  153 (606)
T KOG1731|consen  117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL  153 (606)
T ss_pred             CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence            9999999765311  0111113444566666655444

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.28  E-value=3.6e-11  Score=86.90  Aligned_cols=71  Identities=25%  Similarity=0.423  Sum_probs=61.1

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHC--CCcEEEEEeCcCc-----------------------HHHHHHCCCCc
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEH-----------------------KSMCYSLNVHV  100 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~--~~v~~~~Vd~~~~-----------------------~~l~~~~~I~~  100 (218)
                      .+++++|+||++||++|+...+.+.++.+++  +++.++.|+++.+                       ..+.+.|++.+
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            3789999999999999999999999999998  5699999999875                       77899999999


Q ss_pred             CCEEEEEeCCCeeEEEE
Q 027830          101 LPFFRFYRGAHGRVCSF  117 (218)
Q Consensus       101 ~Pti~l~~~g~~~~~~~  117 (218)
                      +|++++++.+ |+++..
T Consensus        98 ~P~~~l~d~~-g~v~~~  113 (116)
T cd02966          98 LPTTFLIDRD-GRIRAR  113 (116)
T ss_pred             cceEEEECCC-CcEEEE
Confidence            9999999543 345443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.28  E-value=6e-11  Score=94.56  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=67.1

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-------------HHHHHHCCC--CcCCEEEEEeCCCeeEE
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-------------KSMCYSLNV--HVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-------------~~l~~~~~I--~~~Pti~l~~~g~~~~~  115 (218)
                      +|+||++||++|++..|.+++++++| ++.++.|+++..             ..+...|++  .++|+.++++.. |++.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~-G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN-TLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC-CcEE
Confidence            77899999999999999999999998 577776766532             236678995  699999999544 3443


Q ss_pred             -EEecCccCHHHHHHHHHhhCCC
Q 027830          116 -SFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus       116 -~~~~g~~~~~~l~~~l~~~~~~  137 (218)
                       ....|..+.++|.+.|.+.+..
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhh
Confidence             3445999999999999888754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.26  E-value=3.1e-11  Score=119.19  Aligned_cols=89  Identities=18%  Similarity=0.290  Sum_probs=73.1

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeC---------------------------cCcHHHHHHC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNY---------------------------EEHKSMCYSL   96 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~---------------------------~~~~~l~~~~   96 (218)
                      .+|++||+|||+||++|+...|.|+++.++|++  +.++.|.+                           +.+..+.+.|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            589999999999999999999999999999975  77777642                           2244677899


Q ss_pred             CCCcCCEEEEEe-CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830           97 NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus        97 ~I~~~Pti~l~~-~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +|.++|++++|+ +|+  ++....|....+.|.++|.+.+.
T Consensus       499 ~V~~iPt~ilid~~G~--iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGK--LIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             CCCccceEEEECCCCe--EEEEEecccCHHHHHHHHHHHHH
Confidence            999999999994 554  55555588889999999987763

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.26  E-value=4.7e-11  Score=88.95  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEe---------------------CcCcHHHHHHCCCCcCCEE
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---------------------YEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd---------------------~~~~~~l~~~~~I~~~Pti  104 (218)
                      .+++++|+||++||++|+.+.|.+.++++.+. +..+.+|                     .+.+..+++.|+|.++|++
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~   97 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI   97 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence            46899999999999999999999999988743 2222222                     1345679999999999999


Q ss_pred             EEEeCCCeeEEEEecCccCHHHHHHH
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus       105 ~l~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      +++++++  +.....|..+.++|.+.
T Consensus        98 ~vid~~g--i~~~~~g~~~~~~~~~~  121 (123)
T cd03011          98 VIVDPGG--IVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             EEEcCCC--eEEEEeccCCHHHHHhh
Confidence            9998774  44444488888888653

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.21  E-value=3.5e-10  Score=83.70  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=71.1

Q ss_pred             cCCCeEEEEEECCCChhHHhHHH-HHH--HHHHHCC-CcEEEEEeCc--CcHHHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHP-KIC--QLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p-~l~--~la~~~~-~v~~~~Vd~~--~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~  118 (218)
                      ..+|+++|+|+++||.+|+.+.. .|.  ++.+.+. +..++.+|.+  +...++..|++.++|+++++....+.++...
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~   94 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW   94 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence            36899999999999999999975 342  4444443 4777888886  4567899999999999999975223466666


Q ss_pred             cCccCHHHHHHHHHhhC
Q 027830          119 CTNATIKKFKDALAKHT  135 (218)
Q Consensus       119 ~g~~~~~~l~~~l~~~~  135 (218)
                      .|..+.++|...|++..
T Consensus        95 ~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          95 SGNITPEDLLSQLIEFL  111 (114)
T ss_pred             cCCCCHHHHHHHHHHHH
Confidence            69999999999998765

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.19  E-value=3.4e-10  Score=85.73  Aligned_cols=99  Identities=13%  Similarity=0.019  Sum_probs=80.5

Q ss_pred             hhHHHHHHhcCCCeEEEEEECC--CChhHHhHHHHHHHHHHHCC-C-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCC
Q 027830           36 KDLVESLWHAGDKLVVVDFFSP--GCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~--wC~~C~~~~p~l~~la~~~~-~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      .++.+.+..  ....+|.|-.+  -++.+....=+|.+++++|+ + ++|++||++.++.++.+|||.++||++||++|+
T Consensus        25 ~~~~~~~~~--~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk  102 (132)
T PRK11509         25 SRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN  102 (132)
T ss_pred             ccHHHHHhC--CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence            345555533  44556655544  47888888899999999998 3 999999999999999999999999999999986


Q ss_pred             eeEEEEecCccCHHHHHHHHHhhCCCC
Q 027830          112 GRVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       112 ~~~~~~~~g~~~~~~l~~~l~~~~~~~  138 (218)
                        .+....|..+.+++.++|++++...
T Consensus       103 --~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509        103 --YRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             --EEEEEeCcCCHHHHHHHHHHHhcCc
Confidence              4544448999999999999998654

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.18  E-value=2.1e-10  Score=86.16  Aligned_cols=74  Identities=18%  Similarity=0.284  Sum_probs=57.9

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc---------------------------CcHHHHHHC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE---------------------------EHKSMCYSL   96 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~---------------------------~~~~l~~~~   96 (218)
                      .+++++|+||++||++|++..|.|.++.++|.+  +.++.|+.+                           ....+.+.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            478999999999999999999999999999874  788777541                           123567789


Q ss_pred             CCCcCCEEEEEeCCCeeEEEEecC
Q 027830           97 NVHVLPFFRFYRGAHGRVCSFSCT  120 (218)
Q Consensus        97 ~I~~~Pti~l~~~g~~~~~~~~~g  120 (218)
                      ++.++|++++++.+ |++.....|
T Consensus       102 ~v~~~P~~~vid~~-G~v~~~~~G  124 (126)
T cd03012         102 GNQYWPALYLIDPT-GNVRHVHFG  124 (126)
T ss_pred             CCCcCCeEEEECCC-CcEEEEEec
Confidence            99999999999533 345554433

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.14  E-value=4.1e-10  Score=86.45  Aligned_cols=83  Identities=20%  Similarity=0.316  Sum_probs=63.5

Q ss_pred             CCCeEEEEEECC-CChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCC--
Q 027830           46 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH--   99 (218)
Q Consensus        46 ~~k~vlV~Fya~-wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~--   99 (218)
                      .+|+++|+||++ ||++|+...|.+.++.+.|.  ++.++.|..+.                     ...+.+.|++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            589999999999 99999999999999988754  48887776543                     34678899988  


Q ss_pred             -------cCCEEEEEeCCCeeEEEEecCccC--HHHHHH
Q 027830          100 -------VLPFFRFYRGAHGRVCSFSCTNAT--IKKFKD  129 (218)
Q Consensus       100 -------~~Pti~l~~~g~~~~~~~~~g~~~--~~~l~~  129 (218)
                             ++|+++++..+ |++.....|...  ..++.+
T Consensus       107 ~~~~~~~~~P~~~lId~~-G~V~~~~~g~~~~~~~~~~~  144 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKD-GKVVYRHVGPDPDEESDLEA  144 (146)
T ss_dssp             CCTTTTSSSSEEEEEETT-SBEEEEEESSBTTSHHSHHH
T ss_pred             cccccCCeecEEEEEECC-CEEEEEEeCCCCCCCCChhh
Confidence                   99999888654 356665555554  444443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.13  E-value=4.5e-10  Score=91.33  Aligned_cols=90  Identities=10%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc-------C----cHHHHHHCCCC-------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE-------E----HKSMCYSLNVH-------------   99 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~-------~----~~~l~~~~~I~-------------   99 (218)
                      .++++||+|||+||++|+...|.|.++.++|.+  +.++.|+++       +    ....++++++.             
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            588999999999999999999999999999864  899999863       1    22334444431             


Q ss_pred             -----------------------cCC---EEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          100 -----------------------VLP---FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       100 -----------------------~~P---ti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                                             .+|   +.+++ |.+|+++.+..|..+.+.+.+.|++.+.
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflI-D~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLV-NKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                   122   34444 3335677777688888899999988874

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.11  E-value=1.6e-10  Score=84.84  Aligned_cols=62  Identities=24%  Similarity=0.442  Sum_probs=46.5

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEe---CcC-----------------cHHHHHHCCCCcCCEEE
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVN---YEE-----------------HKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd---~~~-----------------~~~l~~~~~I~~~Pti~  105 (218)
                      +++++|+||++||++|+...|.++++.+.+.+ +.++.+.   .++                 +..+.+.|++.++|+.+
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~  100 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV  100 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence            78999999999999999999999999888754 6666552   111                 12355566777777777


Q ss_pred             EEe
Q 027830          106 FYR  108 (218)
Q Consensus       106 l~~  108 (218)
                      +++
T Consensus       101 vid  103 (114)
T cd02967         101 LLD  103 (114)
T ss_pred             EEC
Confidence            774

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.11  E-value=5.9e-10  Score=89.25  Aligned_cols=83  Identities=8%  Similarity=-0.003  Sum_probs=63.0

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEE------EEEeCcC-----------------------------cH
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF------LQVNYEE-----------------------------HK   90 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~------~~Vd~~~-----------------------------~~   90 (218)
                      .+|+++|+|||+||++|+..+|.+.++.++  ++.+      ..||.++                             +.
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g  135 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG  135 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence            599999999999999999999999999764  2333      4455442                             23


Q ss_pred             HHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830           91 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus        91 ~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      .+...|++.++|+.+|+-|.+|++.....|..+.+++.+.
T Consensus       136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~  175 (184)
T TIGR01626       136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV  175 (184)
T ss_pred             hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence            4567899999988854446557788777788888877663

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.8e-10  Score=93.42  Aligned_cols=137  Identities=18%  Similarity=0.157  Sum_probs=101.1

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~  107 (218)
                      .+..|...++|   +.. +++..+++||++||..|+++..++..+++..+++.|++++.+..++++..+.+..+|+++++
T Consensus         2 ~v~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~   77 (227)
T KOG0911|consen    2 TVQFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFF   77 (227)
T ss_pred             CceeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeee
Confidence            46677777777   322 78999999999999999999999999999888899999999999999999999999999999


Q ss_pred             eCCCeeEEEEecCccCHHHHHHHHHhhCCCCC--CCCCCC-CC----------CHHHHHHHHhCCCceeeeCCCCCC
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDALAKHTPDRC--GLGPTK-GL----------EEKELLALAANKDLSFNYTPKPHP  171 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~--~~~~~~-~l----------~~~~l~~~~~~~~~v~~y~p~~~~  171 (218)
                      ..|+  .+... .+.....+...+....+...  ..+... .+          -++.++.+.+.+++|+|+++.|..
T Consensus        78 ~~~~--~v~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~  151 (227)
T KOG0911|consen   78 FLGE--KVDRL-SGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEE  151 (227)
T ss_pred             ecch--hhhhh-hccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCc
Confidence            8876  22222 23334444444433332221  111111 11          123688888889999999999988

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=99.08  E-value=2.5e-10  Score=96.49  Aligned_cols=109  Identities=16%  Similarity=0.319  Sum_probs=80.5

Q ss_pred             ccCcEEecChhhHHHHHHhc-CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830           26 HRLALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~-~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      ...+.+|.+.++|.+.+.+. .+..|||+||-+.++.|+.+...|..||.+|+.++|++|..+..+ +...|.+..+||+
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl  202 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL  202 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence            45788999988998888542 356899999999999999999999999999999999999998765 6789999999999


Q ss_pred             EEEeCCC--eeEEEEe---cCccCHHHHHHHHHhhC
Q 027830          105 RFYRGAH--GRVCSFS---CTNATIKKFKDALAKHT  135 (218)
Q Consensus       105 ~l~~~g~--~~~~~~~---~g~~~~~~l~~~l~~~~  135 (218)
                      ++|++|.  ++++.+.   ....+..+|+.||.++-
T Consensus       203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G  238 (265)
T PF02114_consen  203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG  238 (265)
T ss_dssp             EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred             EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence            9999986  2222221   12566788999888775

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.08  E-value=7.1e-10  Score=77.30  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=48.0

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHH---HHHHH-HCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l---~~la~-~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~  108 (218)
                      ..+|+++|+|+++||+.|+.+...+   .++.+ ...++.+++||.+.........+ .++|+++|+.
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld   81 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD   81 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence            3599999999999999999998766   34444 22458999999987665433222 7799999985

...

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.07  E-value=1.6e-09  Score=87.37  Aligned_cols=87  Identities=15%  Similarity=0.306  Sum_probs=62.1

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc--------------------CcHHHHHHCCCCcCCEEE
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------------------EHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~--------------------~~~~l~~~~~I~~~Pti~  105 (218)
                      .+++++|+||++||++|+...|.+.++.+.+ ++.++.|..+                    ...++++.|++.++|+.+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~  151 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV  151 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence            5789999999999999999999999998765 3444444321                    134677899999999988


Q ss_pred             EEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830          106 FYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      +++.+ |++.... .....+.+.+.++..-
T Consensus       152 lID~~-G~I~~~g-~~~~~~~le~ll~~l~  179 (189)
T TIGR02661       152 LLDQD-GKIRAKG-LTNTREHLESLLEADR  179 (189)
T ss_pred             EECCC-CeEEEcc-CCCCHHHHHHHHHHHH
Confidence            88533 3454432 3345677777776543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PF13728 TraF: F plasmid transfer operon protein

Probab=99.06  E-value=3.2e-09  Score=87.30  Aligned_cols=93  Identities=16%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc-----------CcHHHHHHCCCCcCCEEEE
Q 027830           38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------EHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~-----------~~~~l~~~~~I~~~Pti~l  106 (218)
                      -...|....++.-|++||.+.|++|+.+.|++..++++| ++.+..|++|           .+..+++++||..+|++++
T Consensus       111 ~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L  189 (215)
T PF13728_consen  111 RDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL  189 (215)
T ss_pred             HHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence            344555556888999999999999999999999999999 6777777776           3578899999999999999


Q ss_pred             EeCCCeeEEEEecCccCHHHHHHHH
Q 027830          107 YRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus       107 ~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      +..+.++......|..+.++|.+-|
T Consensus       190 v~~~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  190 VNPNTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             EECCCCeEEEEeeecCCHHHHHHhh
Confidence            9876656777777999999998765

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.05  E-value=2.1e-09  Score=89.38  Aligned_cols=89  Identities=11%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcC--------c---HHHH-HHCC--------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE--------H---KSMC-YSLN--------------   97 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~--------~---~~l~-~~~~--------------   97 (218)
                      .++++||+||++||++|+...|.|.++.++|.+  +.++.|+++.        .   ...+ ++++              
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            579999999999999999999999999999864  8999888731        1   1222 2222              


Q ss_pred             --------------------CCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830           98 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        98 --------------------I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                                          |...|+.++++.+ |+++....|..+.++|.+.|++.+
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~-GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKN-GKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCC-CcEEEEECCCCCHHHHHHHHHHHh
Confidence                                1234777777433 557666668889999999998876

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.04  E-value=8.8e-10  Score=87.43  Aligned_cols=85  Identities=26%  Similarity=0.427  Sum_probs=80.1

Q ss_pred             cccCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEE
Q 027830           25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      -++.+.+|.+..+|.+.+.+  ...|+++||-+.-..|+.+...|+.|++.|-+.+|++||+...|-++.+++|..+||+
T Consensus        64 GhG~y~ev~~Ekdf~~~~~k--S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v  141 (211)
T KOG1672|consen   64 GHGEYEEVASEKDFFEEVKK--SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTV  141 (211)
T ss_pred             CCceEEEeccHHHHHHHhhc--CceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeE
Confidence            35778999999999999865  6789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCC
Q 027830          105 RFYRGAH  111 (218)
Q Consensus       105 ~l~~~g~  111 (218)
                      .+|++|+
T Consensus       142 ~l~k~g~  148 (211)
T KOG1672|consen  142 ALFKNGK  148 (211)
T ss_pred             EEEEcCE
Confidence            9999997

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.02  E-value=1.6e-09  Score=77.50  Aligned_cols=83  Identities=28%  Similarity=0.461  Sum_probs=67.7

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCc-CcHHHHHHCC--CCcCCEEEEEeCCCeeEEEEecC--
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-EHKSMCYSLN--VHVLPFFRFYRGAHGRVCSFSCT--  120 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~-~~~~l~~~~~--I~~~Pti~l~~~g~~~~~~~~~g--  120 (218)
                      ++++++.||++||++|+.+.|.+.++++.+.+ +.++.+|.. .+..+...|+  +..+|+++++.++.. ..... +  
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~  109 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLV-GGK  109 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhh-hcc
Confidence            78999999999999999999999999999985 999999997 7889999999  999999999988863 33332 3  


Q ss_pred             ccCHHHHHHHH
Q 027830          121 NATIKKFKDAL  131 (218)
Q Consensus       121 ~~~~~~l~~~l  131 (218)
                      ......+.+..
T Consensus       110 ~~~~~~~~~~~  120 (127)
T COG0526         110 VLPKEALIDAL  120 (127)
T ss_pred             cCCHHHHHHHh
Confidence            34444444433

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.01  E-value=1.1e-09  Score=82.86  Aligned_cols=89  Identities=15%  Similarity=0.226  Sum_probs=53.7

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHHH---HHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCC-C--eeEEE-
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA-H--GRVCS-  116 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g-~--~~~~~-  116 (218)
                      ..+|+++|+||++||++|+.+...+.   ++.+... ++..+.++.+....-....+ .++||++|++.+ +  .++.. 
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~Gy   99 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADITGR   99 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccccccc
Confidence            47999999999999999999987653   3444332 45656666642210011233 689999999543 3  11111 


Q ss_pred             -----EecCccCHHHHHHHHHhh
Q 027830          117 -----FSCTNATIKKFKDALAKH  134 (218)
Q Consensus       117 -----~~~g~~~~~~l~~~l~~~  134 (218)
                           |.+...+.+.|.+-+++.
T Consensus       100 ~~~~~~~y~~~~~~~~~~~m~~a  122 (130)
T cd02960         100 YSNRLYTYEPADIPLLIENMKKA  122 (130)
T ss_pred             ccCccceeCcCcHHHHHHHHHHH
Confidence                 222345555666655543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PLN02412 probable glutathione peroxidase

Probab=98.99  E-value=4.6e-09  Score=83.05  Aligned_cols=90  Identities=11%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCc--------CcHHH----HHHCC--------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE--------EHKSM----CYSLN--------------   97 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~--------~~~~l----~~~~~--------------   97 (218)
                      .+|++||+||++||++|+...|.|.++.++|.+  +.++.|+++        ...++    +++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            579999999999999999999999999999874  888888763        21122    12211              


Q ss_pred             --------------------CCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830           98 --------------------VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus        98 --------------------I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                                          |.+.|+.++++.+ |+++....|..+.++|...|+..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~-G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKE-GKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCC-CcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                3335787777433 4577766689999999999988764

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6.9e-10  Score=89.55  Aligned_cols=83  Identities=13%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCC------c
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH------V  100 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~------~  100 (218)
                      +.-.+..+.+++.+..+..+.|+|.|||.|.+.|+++.|.+.+|+.+|..  ++|++||+...++.+.+|+|.      .
T Consensus       126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ  205 (265)
T KOG0914|consen  126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ  205 (265)
T ss_pred             eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence            44555667777888887889999999999999999999999999999864  999999999999999999985      6


Q ss_pred             CCEEEEEeCCC
Q 027830          101 LPFFRFYRGAH  111 (218)
Q Consensus       101 ~Pti~l~~~g~  111 (218)
                      .||+++|.+|+
T Consensus       206 LPT~ilFq~gk  216 (265)
T KOG0914|consen  206 LPTYILFQKGK  216 (265)
T ss_pred             CCeEEEEccch
Confidence            99999999997

>smart00594 UAS UAS domain

Probab=98.98  E-value=1.2e-08  Score=76.58  Aligned_cols=87  Identities=11%  Similarity=0.229  Sum_probs=65.2

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHH-H--HHHHHCC-CcEEEEEeCc--CcHHHHHHCCCCcCCEEEEEeCCCe----eE
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKI-C--QLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHG----RV  114 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l-~--~la~~~~-~v~~~~Vd~~--~~~~l~~~~~I~~~Pti~l~~~g~~----~~  114 (218)
                      ..+|.++|+|+++||..|+.+...+ .  ++.+... ++.+..+|++  +...++..|++.++|++.++....|    .+
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~  104 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEW  104 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEE
Confidence            3688999999999999999987543 2  3444333 4777778875  4567899999999999999954321    34


Q ss_pred             EEEecCccCHHHHHHHH
Q 027830          115 CSFSCTNATIKKFKDAL  131 (218)
Q Consensus       115 ~~~~~g~~~~~~l~~~l  131 (218)
                      +....|..+.++|..+|
T Consensus       105 ~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      105 VGVVEGEISPEELMTFL  121 (122)
T ss_pred             eccccCCCCHHHHHHhh
Confidence            55555899999998876

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.97  E-value=7.1e-09  Score=80.54  Aligned_cols=88  Identities=14%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc--------C---cHHHHHH-CCC-------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE--------E---HKSMCYS-LNV-------------   98 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~--------~---~~~l~~~-~~I-------------   98 (218)
                      .+|++||.|||+||++|+...|.+.++.++|.  ++.++.|++.        .   ....+++ +++             
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~  100 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS  100 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence            58899999999999999999999999999986  4899988861        1   1222222 221             


Q ss_pred             -------------CcCCE----EEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830           99 -------------HVLPF----FRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus        99 -------------~~~Pt----i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                                   .++|+    .++++ .+|++.....|..+.++|...|++.
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~tflID-~~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540       101 EAEPAFRFLVDSSKKEPRWNFWKYLVN-PEGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCcHHHHHHhcCCCCCCCccEEEEEc-CCCcEEEEECCCCCHHHHHHHHHHh
Confidence                         13675    44443 2245766666888888888888764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.96  E-value=1e-08  Score=81.02  Aligned_cols=91  Identities=19%  Similarity=0.268  Sum_probs=70.2

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-----------------------------cHHHHH
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-----------------------------~~~l~~   94 (218)
                      .++++||+||++||+.|....+.+.++.++|+  ++.|+.|..+.                             +..+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            57899999999999999999999999999987  48888887643                             234567


Q ss_pred             HCCCCcCCEEEEEeCCCeeEEEEe---------cCccCHHHHHHHHHhhCCC
Q 027830           95 SLNVHVLPFFRFYRGAHGRVCSFS---------CTNATIKKFKDALAKHTPD  137 (218)
Q Consensus        95 ~~~I~~~Pti~l~~~g~~~~~~~~---------~g~~~~~~l~~~l~~~~~~  137 (218)
                      .|++..+|++++++.+ |+++...         .+..+..++.+.|+..+..
T Consensus       104 ~~~v~~~P~~~lid~~-G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  154 (171)
T cd02969         104 AYGAACTPDFFLFDPD-GKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG  154 (171)
T ss_pred             HcCCCcCCcEEEECCC-CeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence            8999999999999543 3454321         0224668899999888754

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.94  E-value=6.1e-09  Score=80.86  Aligned_cols=41  Identities=15%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE   87 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~   87 (218)
                      .+|+++|+|||+||+ |+...|.|.++.++|.  ++.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            589999999999999 9999999999999986  3888888753

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.93  E-value=6.3e-09  Score=69.79  Aligned_cols=69  Identities=16%  Similarity=0.293  Sum_probs=53.1

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK  126 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~  126 (218)
                      +..||++||++|+.+.+.|++     .++.+..+|++.++.    +.+.+++.++|++++.  |+  .  .  .+.+.+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~--~--~--~g~~~~~   68 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK--I--I--VGFDPEK   68 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE--E--E--eeCCHHH
Confidence            567999999999999988865     258899999987654    4567999999999874  43  2  2  2357788


Q ss_pred             HHHHHH
Q 027830          127 FKDALA  132 (218)
Q Consensus       127 l~~~l~  132 (218)
                      |.++|+
T Consensus        69 i~~~i~   74 (74)
T TIGR02196        69 LDQLLE   74 (74)
T ss_pred             HHHHhC
Confidence            887763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.92  E-value=7.5e-09  Score=66.01  Aligned_cols=60  Identities=28%  Similarity=0.505  Sum_probs=51.9

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHH---HCCCCcCCEEEEEeCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGA  110 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~---~~~I~~~Pti~l~~~g  110 (218)
                      ++.||++||++|+.+.+.+.++.....++.+..+|++.......   .+++..+|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            57899999999999999999994445569999999998876655   7899999999999776

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.88  E-value=1.4e-08  Score=69.04  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHH-----CCCCcCCEEEEEeCCCeeEEEEecCccCHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS-----LNVHVLPFFRFYRGAHGRVCSFSCTNATIK  125 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~-----~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~  125 (218)
                      ++.||++||++|+.+++.|.++.     +.+-.+|++++......     +++.++|++ ++.+|.  ..    ...+..
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~--~l----~~~~~~   69 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS--FL----TNPSAA   69 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe--Ee----cCCCHH
Confidence            57899999999999999987663     55667888877665555     389999997 466664  22    245556


Q ss_pred             HHHHHHH
Q 027830          126 KFKDALA  132 (218)
Q Consensus       126 ~l~~~l~  132 (218)
                      ++...|+
T Consensus        70 ~~~~~l~   76 (77)
T TIGR02200        70 QVKAKLQ   76 (77)
T ss_pred             HHHHHhh
Confidence            6766654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.87  E-value=3.9e-08  Score=82.64  Aligned_cols=98  Identities=8%  Similarity=0.143  Sum_probs=80.4

Q ss_pred             HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-----------HHHHHHCCCCcCCEEEE
Q 027830           38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------KSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-----------~~l~~~~~I~~~Pti~l  106 (218)
                      -.+.+....++.-|++||.+.|++|+++.|++..++++| ++.++.|++|..           ..+++++||..+|++++
T Consensus       141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L  219 (256)
T TIGR02739       141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL  219 (256)
T ss_pred             HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence            344454445778999999999999999999999999999 477777766643           56889999999999999


Q ss_pred             EeCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          107 YRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       107 ~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      ...+.++.....+|..+.++|.+-|...+.
T Consensus       220 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       220 VNPKSQKMSPLAYGFISQDELKERILNVLT  249 (256)
T ss_pred             EECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence            987765677777799999999998877664

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.78  E-value=4.2e-08  Score=74.41  Aligned_cols=81  Identities=20%  Similarity=0.335  Sum_probs=54.9

Q ss_pred             hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHC---CCCcCCEEEEEeCCCee
Q 027830           37 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHGR  113 (218)
Q Consensus        37 ~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~---~I~~~Pti~l~~~g~~~  113 (218)
                      +....+.....+..++.|..+||+.|.+..|.+.++++..+++.+-.+..+++.++..+|   |...+|++++++++ +.
T Consensus        31 ~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~-~~  109 (129)
T PF14595_consen   31 EQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD-GK  109 (129)
T ss_dssp             HHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT---
T ss_pred             HHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC-CC
Confidence            444555555677889999999999999999999999999988888888888888877665   57889999999665 33


Q ss_pred             EEEEe
Q 027830          114 VCSFS  118 (218)
Q Consensus       114 ~~~~~  118 (218)
                      .....
T Consensus       110 ~lg~w  114 (129)
T PF14595_consen  110 ELGRW  114 (129)
T ss_dssp             EEEEE
T ss_pred             EeEEE
Confidence            44443

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.77  E-value=1.3e-07  Score=74.73  Aligned_cols=86  Identities=16%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             CCCeEEEEEECCC-ChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-----------------------cHHHHHHCCCCcC
Q 027830           46 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVL  101 (218)
Q Consensus        46 ~~k~vlV~Fya~w-C~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-----------------------~~~l~~~~~I~~~  101 (218)
                      .+|+++|+||++| |++|....+.|.++.+++.++.++.|+.+.                       ...+++.||+...
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~  122 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA  122 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence            4789999999999 999999999999999998778888877642                       2256778888777


Q ss_pred             C---------EEEEEeCCCeeEEEEec-----CccCHHHHHHHHH
Q 027830          102 P---------FFRFYRGAHGRVCSFSC-----TNATIKKFKDALA  132 (218)
Q Consensus       102 P---------ti~l~~~g~~~~~~~~~-----g~~~~~~l~~~l~  132 (218)
                      |         +.++++.. |++.....     .....+++.++|+
T Consensus       123 ~~~~~g~~~r~tfvId~~-G~I~~~~~~~~~~~~~~~~~~l~~l~  166 (167)
T PRK00522        123 EGPLKGLLARAVFVLDEN-NKVVYSELVPEITNEPDYDAALAALK  166 (167)
T ss_pred             ccccCCceeeEEEEECCC-CeEEEEEECCCcCCCCCHHHHHHHhh
Confidence            7         76666422 33433321     2335666666654

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.77  E-value=2.1e-09  Score=87.63  Aligned_cols=100  Identities=17%  Similarity=0.270  Sum_probs=83.7

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      +++.|+ .+++...+    ..-+++.|+|+||+.|+.+.+.|..++.--.|  |.++.||++.++.+.-+|-+...|||+
T Consensus        25 ~~~~~~-eenw~~~l----~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIY   99 (248)
T KOG0913|consen   25 KLTRID-EENWKELL----TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIY   99 (248)
T ss_pred             eeEEec-ccchhhhh----chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEE
Confidence            444444 45666665    44789999999999999999999999876544  999999999999999999999999999


Q ss_pred             EEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830          106 FYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       106 l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      -.++|.  .-.|. |.++..+++.|+...-
T Consensus       100 HvkDGe--Frrys-gaRdk~dfisf~~~r~  126 (248)
T KOG0913|consen  100 HVKDGE--FRRYS-GARDKNDFISFEEHRE  126 (248)
T ss_pred             Eeeccc--ccccc-CcccchhHHHHHHhhh
Confidence            999986  55555 9999999999997654

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.74  E-value=1.7e-07  Score=78.41  Aligned_cols=96  Identities=11%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             HHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-----------cHHHHHHCCCCcCCEEEEEe
Q 027830           40 ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        40 ~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-----------~~~l~~~~~I~~~Pti~l~~  108 (218)
                      +.|..-.++.-|++||.+.|++|+.+.|+++.++++| ++.++-|++|.           +...++++||..+|++++.+
T Consensus       136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~  214 (248)
T PRK13703        136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVD  214 (248)
T ss_pred             HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEE
Confidence            3444445668899999999999999999999999998 45555555442           33467899999999999998


Q ss_pred             CCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      .+.++.....+|..+.++|.+-|...+.
T Consensus       215 ~~t~~~~pv~~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        215 PKSGSVRPLSYGFITQDDLAKRFLNVST  242 (248)
T ss_pred             CCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence            7766677777799999999998877654

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.73  E-value=1e-07  Score=71.00  Aligned_cols=84  Identities=13%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             ecChhhHHHHHHh--cCCCeEEEEEECC-------CChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcH-------HHHH
Q 027830           32 LGRHKDLVESLWH--AGDKLVVVDFFSP-------GCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHK-------SMCY   94 (218)
Q Consensus        32 i~s~~~~~~~l~~--~~~k~vlV~Fya~-------wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~-------~l~~   94 (218)
                      +...++|.+.+..  .++++++|.|+++       ||+.|....|.+++.-...+ +..|+.|.+...+       ....
T Consensus         2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~   81 (119)
T PF06110_consen    2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT   81 (119)
T ss_dssp             EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred             ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence            4556778888864  5678999999954       99999999999998877765 4888888874321       2333


Q ss_pred             --HCCCCcCCEEEEEeCCCeeEEE
Q 027830           95 --SLNVHVLPFFRFYRGAHGRVCS  116 (218)
Q Consensus        95 --~~~I~~~Pti~l~~~g~~~~~~  116 (218)
                        .+++.++||++-+.++ +++..
T Consensus        82 ~p~~~l~~IPTLi~~~~~-~rL~e  104 (119)
T PF06110_consen   82 DPDLKLKGIPTLIRWETG-ERLVE  104 (119)
T ss_dssp             --CC---SSSEEEECTSS--EEEH
T ss_pred             cceeeeeecceEEEECCC-Cccch
Confidence              5999999999999776 35444

; PDB: 1V9W_A 1WOU_A.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.73  E-value=1.1e-07  Score=72.74  Aligned_cols=72  Identities=14%  Similarity=0.141  Sum_probs=54.3

Q ss_pred             CCCeEEEEEECCC-ChhHHhHHHHHHHHHHHCCCcEEEEEeCcC----------------------c-HHHHHHCCCCc-
Q 027830           46 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEE----------------------H-KSMCYSLNVHV-  100 (218)
Q Consensus        46 ~~k~vlV~Fya~w-C~~C~~~~p~l~~la~~~~~v~~~~Vd~~~----------------------~-~~l~~~~~I~~-  100 (218)
                      .+|+++|+||+.| |++|+...+.|.++.+++.++.++.|+.+.                      . ..+++.|++.. 
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~  104 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK  104 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence            4789999999999 699999999999999999888888888752                      1 34566777753 


Q ss_pred             -----CCEEEEEeCCCeeEEEEe
Q 027830          101 -----LPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus       101 -----~Pti~l~~~g~~~~~~~~  118 (218)
                           .|+.++++.. |++....
T Consensus       105 ~~~~~~~~~~iid~~-G~I~~~~  126 (143)
T cd03014         105 DLGLLARAVFVIDEN-GKVIYVE  126 (143)
T ss_pred             cCCccceEEEEEcCC-CeEEEEE
Confidence                 5787777422 3344433

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.72  E-value=7.7e-08  Score=77.12  Aligned_cols=89  Identities=11%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             CCCeE-EEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-------c-HH---H-HHHC--------------
Q 027830           46 GDKLV-VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------H-KS---M-CYSL--------------   96 (218)
Q Consensus        46 ~~k~v-lV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-------~-~~---l-~~~~--------------   96 (218)
                      .+|++ ++.|||+||++|+...|.|.++.++|.  ++.++.|+++.       . ..   . .+++              
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g  118 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG  118 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence            46654 556799999999999999999999886  48898887631       0 11   0 1121              


Q ss_pred             ----------------------CCCcCCE---EEEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830           97 ----------------------NVHVLPF---FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        97 ----------------------~I~~~Pt---i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                                            ++.++|+   .+++ |.+|+++....|..+.+.+.+.|.+.+
T Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflI-D~~G~Iv~~~~g~~~~~~l~~~I~~ll  181 (183)
T PTZ00256        119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLI-DGQGKVVKYFSPKVNPNEMIQDIEKLL  181 (183)
T ss_pred             CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEE-CCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence                                  3446784   2444 444667777668888888888888765

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.72  E-value=1.8e-07  Score=64.26  Aligned_cols=73  Identities=21%  Similarity=0.357  Sum_probs=57.0

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecC-ccCHHHHHHH
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT-NATIKKFKDA  130 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g-~~~~~~l~~~  130 (218)
                      |.+++++|+.|..+...++++...++ +.+-.+|..+.+++ .+|||.++|+++  -||+   ..+. | ..+.++|+.+
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalv--Ing~---~~~~-G~~p~~~el~~~   74 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALV--INGK---VVFV-GRVPSKEELKEL   74 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEE--ETTE---EEEE-SS--HHHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEE--ECCE---EEEE-ecCCCHHHHHHH
Confidence            34478889999999999999999984 88878888777776 999999999994  3775   4455 5 7788999988


Q ss_pred             HH
Q 027830          131 LA  132 (218)
Q Consensus       131 l~  132 (218)
                      |+
T Consensus        75 l~   76 (76)
T PF13192_consen   75 LE   76 (76)
T ss_dssp             HH
T ss_pred             hC
Confidence            75

...

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.72  E-value=9.4e-08  Score=72.50  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=62.2

Q ss_pred             CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCCcC
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL  101 (218)
Q Consensus        46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~~~  101 (218)
                      .+++++|+|| +.||+.|....+.+.++.+++.  ++.++.|..+.                     ...+++.|++...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            4789999999 5899999999999999988774  47888776543                     3457788899888


Q ss_pred             ---------CEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830          102 ---------PFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus       102 ---------Pti~l~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                               |++++++.+ |++.....|......+.+.
T Consensus       102 ~~~~~~~~~p~~~lid~~-G~v~~~~~g~~~~~~~~~~  138 (140)
T cd03017         102 KKKKYMGIERSTFLIDPD-GKIVKVWRKVKPKGHAEEV  138 (140)
T ss_pred             cccccCCcceeEEEECCC-CEEEEEEecCCccchHHHH
Confidence                     898888543 4555555466655555543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.71  E-value=1e-07  Score=70.70  Aligned_cols=65  Identities=20%  Similarity=0.341  Sum_probs=55.9

Q ss_pred             CCCeEEEEEECC-CChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCC--
Q 027830           46 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH--   99 (218)
Q Consensus        46 ~~k~vlV~Fya~-wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~--   99 (218)
                      .+++++|.||+. ||++|+...+.|.++.++|+  ++.++.|..+.                     +..+++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            479999999999 99999999999999998876  58998888753                     34677889998  


Q ss_pred             ----cCCEEEEEeCC
Q 027830          100 ----VLPFFRFYRGA  110 (218)
Q Consensus       100 ----~~Pti~l~~~g  110 (218)
                          .+|+++++..+
T Consensus       104 ~~~~~~p~~~lid~~  118 (124)
T PF00578_consen  104 KDTLALPAVFLIDPD  118 (124)
T ss_dssp             TTSEESEEEEEEETT
T ss_pred             cCCceEeEEEEECCC
Confidence                89999999765

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.63  E-value=3.8e-07  Score=72.23  Aligned_cols=89  Identities=15%  Similarity=0.079  Sum_probs=63.2

Q ss_pred             CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .+|.+||+|| +.||++|....+.|.++.++|.  ++.++.|.++.                            ...+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            4789999999 8999999999999999998875  47777776543                            224556


Q ss_pred             HCCCC------cCCEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830           95 SLNVH------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~------~~Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~  135 (218)
                      .|++.      ..|+.++++.. |++.....    ..++.+++.+.|++..
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~-G~I~~~~~~~~~~~~~~~~il~~l~~~~  157 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPE-GIIRHITVNDLPVGRSVDETLRVLDALQ  157 (173)
T ss_pred             HhCCccccCCceeeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            77776      56788888533 34444332    2346777888886653

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.61  E-value=3.5e-07  Score=64.01  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=58.5

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH----HHHHHCC--CCcCCEEEEEeCCCeeEEEEecCccCH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLN--VHVLPFFRFYRGAHGRVCSFSCTNATI  124 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~----~l~~~~~--I~~~Pti~l~~~g~~~~~~~~~g~~~~  124 (218)
                      ++.|+.+||++|++....|+++..++.++.+..+|++.+.    ++...++  +..+|+++  .+|+  .+    |  ..
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~--~i----g--g~   72 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQK--HI----G--GC   72 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCE--EE----c--CH
Confidence            6789999999999999999999988778999999987643    4555555  47899975  4764  21    2  34


Q ss_pred             HHHHHHHHhhCC
Q 027830          125 KKFKDALAKHTP  136 (218)
Q Consensus       125 ~~l~~~l~~~~~  136 (218)
                      ++|.++++.+++
T Consensus        73 ~~~~~~~~~~~~   84 (85)
T PRK11200         73 TDFEAYVKENLG   84 (85)
T ss_pred             HHHHHHHHHhcc
Confidence            778888887764

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.59  E-value=9.4e-08  Score=74.02  Aligned_cols=65  Identities=15%  Similarity=0.255  Sum_probs=50.5

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHC----CCcEEEEEeCcC-------------------------cHHHHHHC
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEE-------------------------HKSMCYSL   96 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~----~~v~~~~Vd~~~-------------------------~~~l~~~~   96 (218)
                      .+|.|.++|.|.||++|+.+-|.+.++.++.    ..+.++-|+-|.                         ..+++.+|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            4799999999999999999999988776653    235555555432                         24678899


Q ss_pred             CCCcCCEEEEEeCC
Q 027830           97 NVHVLPFFRFYRGA  110 (218)
Q Consensus        97 ~I~~~Pti~l~~~g  110 (218)
                      +|.++|++++.+..
T Consensus       112 ~v~~iP~l~i~~~d  125 (157)
T KOG2501|consen  112 EVKGIPALVILKPD  125 (157)
T ss_pred             ccCcCceeEEecCC
Confidence            99999999888644

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.58  E-value=6.6e-07  Score=83.36  Aligned_cols=142  Identities=13%  Similarity=0.112  Sum_probs=105.8

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~  108 (218)
                      +..-...+++...+.+-.+...++.|+.+.|..|..+...+++++..-+.+.+...|..++..++++|++...|+|.+++
T Consensus       348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~  427 (555)
T TIGR03143       348 LLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLD  427 (555)
T ss_pred             ccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEe
Confidence            33344445677777665566678889999999999999999999987666999889998899999999999999999995


Q ss_pred             -CCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCC---CceeeeCCCCCCCCC
Q 027830          109 -GAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANK---DLSFNYTPKPHPMPA  174 (218)
Q Consensus       109 -~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~v~~y~p~~~~~p~  174 (218)
                       +|...-+.|. |-..-.+|..||...+...   +.-..++++..+.+..-.   .+.+|++|+|..||.
T Consensus       428 ~~~~~~~i~f~-g~P~G~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~  493 (555)
T TIGR03143       428 DDGNYTGLKFH-GVPSGHELNSFILALYNAA---GPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPD  493 (555)
T ss_pred             CCCcccceEEE-ecCccHhHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHH
Confidence             4432225555 6667778888887776433   223455666665555432   267789999999997

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=6.2e-07  Score=69.10  Aligned_cols=90  Identities=19%  Similarity=0.288  Sum_probs=68.5

Q ss_pred             cCCCeEEEEEECCCChhHHhHHHHHH---HHHHHCCC-cEEEEEeCcC----------------cHHHHHHCCCCcCCEE
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPD-VQFLQVNYEE----------------HKSMCYSLNVHVLPFF  104 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p~l~---~la~~~~~-v~~~~Vd~~~----------------~~~l~~~~~I~~~Pti  104 (218)
                      ..+|..+++|-++.|.+|.++...+.   ++.+-+.+ +.++.+|++.                ..++++.|+++++||+
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf  119 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF  119 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence            45999999999999999999987765   34443433 7777777642                3589999999999999


Q ss_pred             EEEeCCCeeEEEEecCccCHHHHHHHHHhhC
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       105 ~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      +||++. |+.+...-|....+++..-++-..
T Consensus       120 vFfdk~-Gk~Il~lPGY~ppe~Fl~vlkYVa  149 (182)
T COG2143         120 VFFDKT-GKTILELPGYMPPEQFLAVLKYVA  149 (182)
T ss_pred             EEEcCC-CCEEEecCCCCCHHHHHHHHHHHH
Confidence            999543 445555558899999888776544

>KOG3414 consensus Component of the U4/U6

Probab=98.56  E-value=1e-06  Score=65.39  Aligned_cols=106  Identities=13%  Similarity=0.144  Sum_probs=86.7

Q ss_pred             EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830           30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~  108 (218)
                      -.+++..+..+.+.....+.+++-|.-+|-+.|..+...|..+++...+ +.++-+|+++-+++.+-|++...||++||-
T Consensus         6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf   85 (142)
T KOG3414|consen    6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF   85 (142)
T ss_pred             cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence            3567788888999888899999999999999999999999999999888 788889999999999999999999999887


Q ss_pred             CCCeeEEEEecC--------ccCHHHHHHHHHhhC
Q 027830          109 GAHGRVCSFSCT--------NATIKKFKDALAKHT  135 (218)
Q Consensus       109 ~g~~~~~~~~~g--------~~~~~~l~~~l~~~~  135 (218)
                      +++.-.+.+..|        -.+.+++++.|+-..
T Consensus        86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy  120 (142)
T KOG3414|consen   86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY  120 (142)
T ss_pred             cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence            776322222222        345677777776554

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>TIGR03137 AhpC peroxiredoxin

Probab=98.55  E-value=8.3e-07  Score=71.38  Aligned_cols=88  Identities=8%  Similarity=-0.021  Sum_probs=63.0

Q ss_pred             CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-------------------------cHHHHHHCC
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN   97 (218)
Q Consensus        46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-------------------------~~~l~~~~~   97 (218)
                      .+|++||+|| +.||+.|....+.|.++.+++.  ++.++.|.++.                         ...+++.||
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            4789999999 9999999999999999888774  47777766542                         235677888


Q ss_pred             CC------cCCEEEEEe-CCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830           98 VH------VLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        98 I~------~~Pti~l~~-~g~~~~~~~~----~g~~~~~~l~~~l~~~~  135 (218)
                      +.      ..|+.+++. +|.  +....    ...+..+++.+.|+...
T Consensus       110 v~~~~~g~~~p~tfiID~~G~--I~~~~~~~~~~~~~~~~ll~~l~~~~  156 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGV--IQAVEITDNGIGRDASELLRKIKAAQ  156 (187)
T ss_pred             CcccCCCceeeEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            86      458888885 443  33322    12457888887775443

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.51  E-value=3.3e-07  Score=63.38  Aligned_cols=58  Identities=16%  Similarity=0.238  Sum_probs=44.5

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----HHHHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|+++||++|+.+.+.|.++.-. +.+.++.||.+.+.     .+.+.+++.++|++  |.+|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            4789999999999999999998621 22778888876543     36677899999998  34664

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.48  E-value=1.5e-06  Score=66.58  Aligned_cols=83  Identities=14%  Similarity=0.133  Sum_probs=56.3

Q ss_pred             CeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------c--HHHHHHCCCCc-
Q 027830           48 KLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------H--KSMCYSLNVHV-  100 (218)
Q Consensus        48 k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~--~~l~~~~~I~~-  100 (218)
                      ++++|.|| ++||+.|....+.+.++.+++.  ++.++.|+.+.                     .  ..+.+.|++.. 
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~  108 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE  108 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence            78888887 9999999999999999998875  48888776542                     2  45677788773 


Q ss_pred             ---CC--EEEEEeCCCeeEEEEecC----ccCHHHHHHHH
Q 027830          101 ---LP--FFRFYRGAHGRVCSFSCT----NATIKKFKDAL  131 (218)
Q Consensus       101 ---~P--ti~l~~~g~~~~~~~~~g----~~~~~~l~~~l  131 (218)
                         +|  ++++++.+ |++.....|    ..+..++.+.|
T Consensus       109 ~~~~~~~~~~lid~~-G~v~~~~~~~~~~~~~~~~~~~~~  147 (149)
T cd03018         109 DLGVAERAVFVIDRD-GIIRYAWVSDDGEPRDLPDYDEAL  147 (149)
T ss_pred             cCCCccceEEEECCC-CEEEEEEecCCcccccchhHHHHh
Confidence               33  66677432 344443333    34455555444

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.48  E-value=6e-06  Score=61.42  Aligned_cols=90  Identities=9%  Similarity=0.097  Sum_probs=69.4

Q ss_pred             cCCCeEEEEEECC----CChhHHhHH--HHHHHHHHHCCCcEEEEEeCcC--cHHHHHHCCCCcCCEEEEEe--CCCeeE
Q 027830           45 AGDKLVVVDFFSP----GCGGCKALH--PKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR--GAHGRV  114 (218)
Q Consensus        45 ~~~k~vlV~Fya~----wC~~C~~~~--p~l~~la~~~~~v~~~~Vd~~~--~~~l~~~~~I~~~Pti~l~~--~g~~~~  114 (218)
                      ...|.++|+||++    ||..|+...  |.+.++.+.  ++.+...|++.  ..+++..+++.++|++.++.  +++..+
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v   92 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI   92 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence            4799999999999    999997664  455555543  47788888864  45788999999999999883  444445


Q ss_pred             EEEecCccCHHHHHHHHHhhCC
Q 027830          115 CSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       115 ~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +....|..+.++|...|.....
T Consensus        93 v~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          93 VGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHh
Confidence            6666699999999999887653

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.47  E-value=1.5e-06  Score=66.29  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcCc
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEH   89 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~~   89 (218)
                      ++.+|+.|++.||+.|+...+.|.++.+++.  ++.++.|+.+..
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~   68 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP   68 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence            3445555569999999999999999999874  588888887653

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.44  E-value=2.2e-06  Score=69.77  Aligned_cols=89  Identities=11%  Similarity=0.010  Sum_probs=64.3

Q ss_pred             CCCeEEE-EEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830           46 GDKLVVV-DFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS   95 (218)
Q Consensus        46 ~~k~vlV-~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~   95 (218)
                      .++.++| .||++||+.|....+.|.++.+++.  ++.++.|.++.                           +..+++.
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            3665555 6899999999999999999888774  47777665542                           3456778


Q ss_pred             CCCC------cCCEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830           96 LNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        96 ~~I~------~~Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~  135 (218)
                      ||+.      .+|+.++++.+ |++....    .++++.+++.+.|+...
T Consensus       106 ygv~~~~~g~~~p~~fiId~~-G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPN-QIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             cCCccccCCcEEeEEEEECCC-CEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            8884      58999988643 3343322    35789999999887665

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.43  E-value=2.4e-06  Score=79.64  Aligned_cols=79  Identities=15%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             CCeE-EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHH
Q 027830           47 DKLV-VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK  125 (218)
Q Consensus        47 ~k~v-lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~  125 (218)
                      ++++ +-.|.++||++|......+++++...+++..-.||.+..++++++|+|.++|++++  ||+  +. +. |..+.+
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~--~~-~~-G~~~~~  548 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ--QV-YF-GKKTIE  548 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE--EE-Ee-eCCCHH
Confidence            4454 55678999999999999999999999999999999999999999999999999975  554  22 34 677999


Q ss_pred             HHHHHH
Q 027830          126 KFKDAL  131 (218)
Q Consensus       126 ~l~~~l  131 (218)
                      +|.++|
T Consensus       549 ~~~~~~  554 (555)
T TIGR03143       549 EMLELI  554 (555)
T ss_pred             HHHHhh
Confidence            998886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=98.42  E-value=1.9e-06  Score=60.52  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=57.9

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc----HHHHHHCCC--CcCCEEEEEeCCCeeEEEEecCccCH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNV--HVLPFFRFYRGAHGRVCSFSCTNATI  124 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~----~~l~~~~~I--~~~Pti~l~~~g~~~~~~~~~g~~~~  124 (218)
                      ++.|+.+||++|.+....|.++..+++++.+..+|++.+    .++...++-  .++|++.  .+|+  .   . |+  .
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~--~---i-gG--~   71 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEK--H---V-GG--C   71 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCE--E---e-cC--H
Confidence            678999999999999999999987777788888888753    346666664  7899993  3664  2   2 22  4


Q ss_pred             HHHHHHHHhhCCC
Q 027830          125 KKFKDALAKHTPD  137 (218)
Q Consensus       125 ~~l~~~l~~~~~~  137 (218)
                      ++|.++++++.+.
T Consensus        72 ~dl~~~~~~~~~~   84 (86)
T TIGR02183        72 TDFEQLVKENFDI   84 (86)
T ss_pred             HHHHHHHHhcccc
Confidence            7888888887653

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.40  E-value=1.9e-06  Score=57.39  Aligned_cols=68  Identities=21%  Similarity=0.353  Sum_probs=47.5

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHC----CCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL----NVHVLPFFRFYRGAHGRVCSFSCTNATIKK  126 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~----~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~  126 (218)
                      ++.|+++||++|+++...+.+.     ++.+..+|++.+......+    ++.++|++++  +|+ .+     ++.+.+.
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~-~i-----~g~~~~~   68 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE-HL-----SGFRPDK   68 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE-EE-----ecCCHHH
Confidence            5789999999999998888763     5777778887665544433    6889999975  442 12     3456667


Q ss_pred             HHHHH
Q 027830          127 FKDAL  131 (218)
Q Consensus       127 l~~~l  131 (218)
                      |.++|
T Consensus        69 l~~~~   73 (73)
T cd02976          69 LRALL   73 (73)
T ss_pred             HHhhC
Confidence            76653

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.40  E-value=4.9e-06  Score=67.04  Aligned_cols=89  Identities=9%  Similarity=0.036  Sum_probs=65.7

Q ss_pred             CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC-------------------------cHHHHHHCC
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN   97 (218)
Q Consensus        46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~-------------------------~~~l~~~~~   97 (218)
                      .+|.++|.|| +.||+.|....+.|.++.+++.  ++.++.|..+.                         +..+++.||
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            5789999999 9999999999999999998874  47777776542                         346788899


Q ss_pred             C----CcC--CEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830           98 V----HVL--PFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        98 I----~~~--Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~  135 (218)
                      +    .++  |+.++++.+ |++....    ..+++.+++.+.|+...
T Consensus       110 v~~~~~g~~~r~tfIID~~-G~I~~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQ-GIIQAIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             CCcccCCceeeEEEEECCC-CEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence            8    356  998888533 3333322    23578899988886554

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.40  E-value=3.1e-06  Score=65.48  Aligned_cols=75  Identities=12%  Similarity=0.107  Sum_probs=52.5

Q ss_pred             CCCeEEEEEECC-CChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------cHHHHHHCCCCcC
Q 027830           46 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL  101 (218)
Q Consensus        46 ~~k~vlV~Fya~-wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------~~~l~~~~~I~~~  101 (218)
                      .+++++|+||+. ||+.|....+.+.++.+++.  ++.++.|+.+.                     ...+.+.|++...
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE  108 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence            478999999976 68889999999998888774  48888887643                     3356677887654


Q ss_pred             ------------CEEEEEeCCCeeEEEEecCc
Q 027830          102 ------------PFFRFYRGAHGRVCSFSCTN  121 (218)
Q Consensus       102 ------------Pti~l~~~g~~~~~~~~~g~  121 (218)
                                  |+.++++.. |++.....|.
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~-G~i~~~~~g~  139 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDAD-GKIEHVFDKF  139 (154)
T ss_pred             cccccccccCcceEEEEECCC-CEEEEEEcCC
Confidence                        566666422 4455544343

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.38  E-value=2.3e-06  Score=68.63  Aligned_cols=41  Identities=7%  Similarity=0.143  Sum_probs=36.2

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE   87 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~   87 (218)
                      .+|++||.|||+||+.|+. .+.|+++.++|.  ++.++.+.|+
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            5899999999999999975 889999999986  4899999884

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.38  E-value=5.1e-06  Score=65.14  Aligned_cols=66  Identities=15%  Similarity=0.184  Sum_probs=44.1

Q ss_pred             cCCCeEEEEEECCCChhHHhHHH-HHH--HHHHHCC-CcEEEEEeCcCcHHHHHHC--------CCCcCCEEEEEeCC
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHP-KIC--QLAEMNP-DVQFLQVNYEEHKSMCYSL--------NVHVLPFFRFYRGA  110 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~p-~l~--~la~~~~-~v~~~~Vd~~~~~~l~~~~--------~I~~~Pti~l~~~g  110 (218)
                      ..+|+++|.++++||..|+.|.. .|.  ++++.+. +..-++||.++.+++...|        |..|+|+.+|+...
T Consensus        35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPd  112 (163)
T PF03190_consen   35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPD  112 (163)
T ss_dssp             HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred             hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCC
Confidence            35999999999999999999885 332  4444432 3778899999999998888        78899999999654

; PDB: 3IRA_A.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.34  E-value=1.4e-05  Score=58.09  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=68.3

Q ss_pred             EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcH----HHHHHCCCC-cCCE
Q 027830           30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHK----SMCYSLNVH-VLPF  103 (218)
Q Consensus        30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~----~l~~~~~I~-~~Pt  103 (218)
                      ..|++.+++.+++..+.+++++|+=.++.|+-.......|++.....++ +.++.+|+-+++    .++.+|||. .-|-
T Consensus         2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ   81 (105)
T PF11009_consen    2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ   81 (105)
T ss_dssp             -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred             CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence            5788999999999988899999999999999999999999999988876 999999997765    567889997 6999


Q ss_pred             EEEEeCCCeeEEEEecCccCHHHH
Q 027830          104 FRFYRGAHGRVCSFSCTNATIKKF  127 (218)
Q Consensus       104 i~l~~~g~~~~~~~~~g~~~~~~l  127 (218)
                      ++++++|+ -+....-...+.+.|
T Consensus        82 ~ili~~g~-~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   82 VILIKNGK-VVWHASHWDITAEAL  104 (105)
T ss_dssp             EEEEETTE-EEEEEEGGG-SHHHH
T ss_pred             EEEEECCE-EEEECccccCCHHhc
Confidence            99999997 233333356666655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.33  E-value=6e-06  Score=76.29  Aligned_cols=83  Identities=12%  Similarity=0.197  Sum_probs=71.3

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK  126 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~  126 (218)
                      +..-+..|++++|++|......+.+++...++|.+-.||...+++++++|+|.++|++++  +|+   ..+. |..+.++
T Consensus       116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~-g~~~~~~  189 (517)
T PRK15317        116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE---EFGQ-GRMTLEE  189 (517)
T ss_pred             CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc---EEEe-cCCCHHH
Confidence            445588999999999999999999999999999999999999999999999999999964  554   2234 7788889


Q ss_pred             HHHHHHhhC
Q 027830          127 FKDALAKHT  135 (218)
Q Consensus       127 l~~~l~~~~  135 (218)
                      |.+.+.+..
T Consensus       190 ~~~~~~~~~  198 (517)
T PRK15317        190 ILAKLDTGA  198 (517)
T ss_pred             HHHHHhccc
Confidence            999887654

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.32  E-value=2.8e-05  Score=58.96  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             cCcEEecChhhHHHHHHhcCCCeEEEEEECC--CCh-hH-HhHHHHHHHHHHHCCC--cEEEEEeCcCcHHHHHHCCCC-
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSP--GCG-GC-KALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH-   99 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~--wC~-~C-~~~~p~l~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~-   99 (218)
                      ..++++++.+.+.+.-.  +++..+|-|.-.  -|. .+ ......+.++++.|.+  +.|+.+|.++...+.+.||+. 
T Consensus         2 ~~~~~l~~~~~~~~~C~--~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~   79 (130)
T cd02983           2 PEIIELTSEDVFEETCE--EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG   79 (130)
T ss_pred             CceEEecCHHHHHhhcc--CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence            36788999877776653  356777777532  122 23 4667899999999975  899999999999999999995 


Q ss_pred             -cCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCC
Q 027830          100 -VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCG  140 (218)
Q Consensus       100 -~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  140 (218)
                       ++|++++++..+++...+. |..+.+.|.+|+++.+.....
T Consensus        80 ~~~P~v~i~~~~~~KY~~~~-~~~t~e~i~~Fv~~~l~Gkl~  120 (130)
T cd02983          80 FGYPAMVAINFRKMKFATLK-GSFSEDGINEFLRELSYGRGP  120 (130)
T ss_pred             cCCCEEEEEecccCcccccc-CccCHHHHHHHHHHHHcCCcc
Confidence             5999999977543332233 889999999999999976543

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=3e-06  Score=62.45  Aligned_cols=83  Identities=19%  Similarity=0.318  Sum_probs=61.2

Q ss_pred             cChhhHHHHHHhc-CCCeEEEEEEC--------CCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcC-------cHHHHHH
Q 027830           33 GRHKDLVESLWHA-GDKLVVVDFFS--------PGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE-------HKSMCYS   95 (218)
Q Consensus        33 ~s~~~~~~~l~~~-~~k~vlV~Fya--------~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~-------~~~l~~~   95 (218)
                      ...++|.+.+.+. +++.++|.|++        +||+.|.+..|++.+.-+..+. +.|+.+++..       +......
T Consensus        10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d   89 (128)
T KOG3425|consen   10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD   89 (128)
T ss_pred             chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence            3456677766533 46669999995        5999999999999998887664 9999999854       2234455


Q ss_pred             CCC-CcCCEEEEEeCCCeeEE
Q 027830           96 LNV-HVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        96 ~~I-~~~Pti~l~~~g~~~~~  115 (218)
                      .++ .++||++=|.++.++..
T Consensus        90 ~~~lt~vPTLlrw~~~~~rL~  110 (128)
T KOG3425|consen   90 PGILTAVPTLLRWKRQPQRLD  110 (128)
T ss_pred             CCceeecceeeEEcCccccch
Confidence            666 89999999975433443

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.30  E-value=3e-05  Score=61.17  Aligned_cols=103  Identities=15%  Similarity=0.220  Sum_probs=80.1

Q ss_pred             CcEEecChhhHHHHHHhcCCCe-EEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCC--cCCE
Q 027830           28 LALELGRHKDLVESLWHAGDKL-VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVH--VLPF  103 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~-vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~--~~Pt  103 (218)
                      .+.+++.. .+.....  .+++ +++.|+.........+...+..+++.+.+ +.|+.+|++..+.+++.+|+.  .+|+
T Consensus        78 ~v~~~t~~-n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~  154 (184)
T PF13848_consen   78 LVPELTPE-NFEKLFS--SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPA  154 (184)
T ss_dssp             SCEEESTT-HHHHHHS--TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSE
T ss_pred             cccccchh-hHHHHhc--CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCE
Confidence            35566643 4555542  3545 88888888888999999999999999887 999999999989999999998  8999


Q ss_pred             EEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830          104 FRFYRGAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       104 i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                      ++++....++......+..+.+.|.+||++
T Consensus       155 ~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  155 LVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             EEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             EEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            999984433332222489999999999974

...

>PRK15000 peroxidase; Provisional

Probab=98.28  E-value=8.2e-06  Score=66.39  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=64.6

Q ss_pred             CCCeEEEEEEC-CCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830           46 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fya-~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .++.++|+||+ .||+.|....+.|.++.+++.  ++.++.|.++.                            ...+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            47899999999 599999999999999998875  47777777652                            224566


Q ss_pred             HCCCC------cCCEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830           95 SLNVH------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~------~~Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~  135 (218)
                      .||+.      .+|+.++++.. |++.....    .+++.+++.+.|+...
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~-G~I~~~~~~~~~~gr~~~eilr~l~al~  162 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDAN-GIVRHQVVNDLPLGRNIDEMLRMVDALQ  162 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCC-CEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            78887      68998888633 23333221    3578888888876543

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.28  E-value=1.5e-05  Score=56.71  Aligned_cols=94  Identities=19%  Similarity=0.194  Sum_probs=72.2

Q ss_pred             EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEEe
Q 027830           30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~  108 (218)
                      .+|++.+++...+.  .++.++|-|+.++|.   .....|.++|+.+. ++.|+.++   +..+++++++. .|++++|+
T Consensus         2 ~~i~s~~~l~~~~~--~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~   72 (97)
T cd02981           2 KELTSKEELEKFLD--KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFK   72 (97)
T ss_pred             eecCCHHHHHHHhc--cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeC
Confidence            56788888877663  588999999999988   46678888998886 48888776   46677888775 48999997


Q ss_pred             CCCeeEEEEecCccCHHHHHHHHHh
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                      +.......|. |..+.++|.+||..
T Consensus        73 ~~~~~~~~y~-g~~~~~~l~~fi~~   96 (97)
T cd02981          73 PFEEEPVEYD-GEFTEESLVEFIKD   96 (97)
T ss_pred             CcccCCccCC-CCCCHHHHHHHHHh
Confidence            6433345565 77889999999975

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=98.27  E-value=2e-06  Score=69.51  Aligned_cols=106  Identities=21%  Similarity=0.384  Sum_probs=86.4

Q ss_pred             cCcEEecChhhHHHHHHhc-CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           27 RLALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~-~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      ..|.++++..+|.+.+... +.-.++|+.|-+.-..|..+...+.=|+.+||-++|++|-.+. .....+|..+++||++
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~Ll  216 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLL  216 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEE
Confidence            4689999999999999754 4567899999999999999999999999999999999998764 4567899999999999


Q ss_pred             EEeCCCeeEEE-E------ecCccCHHHHHHHHHhhC
Q 027830          106 FYRGAHGRVCS-F------SCTNATIKKFKDALAKHT  135 (218)
Q Consensus       106 l~~~g~~~~~~-~------~~g~~~~~~l~~~l~~~~  135 (218)
                      ||++|.  .+. |      ........++..||+.+-
T Consensus       217 iYkgGe--LIgNFv~va~qlgedffa~dle~FL~e~g  251 (273)
T KOG3171|consen  217 IYKGGE--LIGNFVSVAEQLGEDFFAGDLESFLNEYG  251 (273)
T ss_pred             EeeCCc--hhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence            999987  221 1      112455677788887654

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.27  E-value=6.1e-06  Score=62.37  Aligned_cols=42  Identities=24%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHC--CCcEEEEEeCc
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYE   87 (218)
Q Consensus        46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~--~~v~~~~Vd~~   87 (218)
                      .+++++|.|| +.||+.|....+.+.++.+++  .++.|+.|..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5889999999 789999999999999999886  35888877764

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.26  E-value=5.6e-06  Score=62.83  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=36.2

Q ss_pred             CCCeEEEEEECCCChh-HHhHHHHHHHHHHHCC-----CcEEEEEeCc
Q 027830           46 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMNP-----DVQFLQVNYE   87 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~-C~~~~p~l~~la~~~~-----~v~~~~Vd~~   87 (218)
                      .+++++|.||++||++ |....+.+.++.+++.     ++.++.|..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            4789999999999998 9999999999988774     3888888764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.26  E-value=3.5e-05  Score=66.62  Aligned_cols=130  Identities=15%  Similarity=0.189  Sum_probs=85.3

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHH------HHHHHHHHH-C--CCcEEEEEeCcCcHHHHHHCCC
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALH------PKICQLAEM-N--PDVQFLQVNYEEHKSMCYSLNV   98 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~------p~l~~la~~-~--~~v~~~~Vd~~~~~~l~~~~~I   98 (218)
                      .++.++. .+|.+.+.+  .+..+|+||.+--.. +...      ..+-+|+.+ .  .++.|+.||..++..+++++|+
T Consensus        35 RVi~Lne-KNfk~~lKk--yd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv  110 (383)
T PF01216_consen   35 RVIDLNE-KNFKRALKK--YDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV  110 (383)
T ss_dssp             -CEEE-T-TTHHHHHHH---SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred             ceEEcch-hHHHHHHHh--hcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence            4667765 478888866  678888899886432 2222      223345443 3  4699999999999999999999


Q ss_pred             CcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHh---CCCceeeeCCC
Q 027830           99 HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA---NKDLSFNYTPK  168 (218)
Q Consensus        99 ~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~v~~y~p~  168 (218)
                      ...+++.+|++|.  ++.|. |.++++-|+.||...+......    -..+.++.++-.   ...++-||.+.
T Consensus       111 ~E~~SiyVfkd~~--~IEyd-G~~saDtLVeFl~dl~edPVei----In~~~e~~~Fe~ied~~klIGyFk~~  176 (383)
T PF01216_consen  111 EEEGSIYVFKDGE--VIEYD-GERSADTLVEFLLDLLEDPVEI----INNKHELKAFERIEDDIKLIGYFKSE  176 (383)
T ss_dssp             -STTEEEEEETTE--EEEE--S--SHHHHHHHHHHHHSSSEEE----E-SHHHHHHHHH--SS-EEEEE-SST
T ss_pred             cccCcEEEEECCc--EEEec-CccCHHHHHHHHHHhcccchhh----hcChhhhhhhhhcccceeEEEEeCCC
Confidence            9999999999975  89998 9999999999999999754321    124445555544   33377777764

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.22  E-value=3.1e-05  Score=58.18  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=78.4

Q ss_pred             EEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCE-EEEE
Q 027830           30 LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF-FRFY  107 (218)
Q Consensus        30 ~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pt-i~l~  107 (218)
                      ..+++.-+..+.+....++.+++-|..+|-+.|.++...|.+++++..+ ..++-||+++-+++.+.|.+. -|. ++||
T Consensus         3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF   81 (133)
T PF02966_consen    3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF   81 (133)
T ss_dssp             EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred             cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence            4577888889999888999999999999999999999999999999888 788999999999999999999 777 4555


Q ss_pred             eCCCeeEEEEecCc--------cCHHHHHHHHHhh
Q 027830          108 RGAHGRVCSFSCTN--------ATIKKFKDALAKH  134 (218)
Q Consensus       108 ~~g~~~~~~~~~g~--------~~~~~l~~~l~~~  134 (218)
                      -+++.-.+.+..|+        .+.++|++.++-.
T Consensus        82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i  116 (133)
T PF02966_consen   82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI  116 (133)
T ss_dssp             ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred             ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence            46652233332222        3467777766543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.16  E-value=2.5e-05  Score=64.98  Aligned_cols=81  Identities=19%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEe----------------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN----------------------------------------   85 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd----------------------------------------   85 (218)
                      .++.+++.|.-+.|++|+++.+.+.++.+.  ++.+..+.                                        
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~  183 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS  183 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence            467889999999999999999999887652  23332211                                        


Q ss_pred             ----CcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830           86 ----YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus        86 ----~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                          ++++..+++++||+++||++ |.+|+  .+   .|..+.++|.++|++.
T Consensus       184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~--~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        184 CDVDIADHYALGVQFGVQGTPAIV-LSNGT--LV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             ccchHHHhHHHHHHcCCccccEEE-EcCCe--Ee---eCCCCHHHHHHHHHHc
Confidence                12355788999999999998 65775  32   3778999999999865

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.13  E-value=2.2e-05  Score=63.95  Aligned_cols=86  Identities=7%  Similarity=0.021  Sum_probs=59.8

Q ss_pred             eEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHHCCCC
Q 027830           49 LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYSLNVH   99 (218)
Q Consensus        49 ~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~~~I~   99 (218)
                      .+|+.|+++||+.|....+.|.++.+++.  ++.++.|+++.                           +..+++.||+.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            45668999999999999999999998875  48888777653                           23567788875


Q ss_pred             ----cC----CEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830          100 ----VL----PFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT  135 (218)
Q Consensus       100 ----~~----Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~  135 (218)
                          +.    |+.++++.+ |++.....    .+++.+++.+.|+...
T Consensus       108 ~~~~~~~~~~r~~fiID~~-G~I~~~~~~~~~~gr~~~ell~~l~~lq  154 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPD-KKIRLILYYPATTGRNFDEILRVVDALQ  154 (203)
T ss_pred             cccCCCCceeeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence                23    456666432 33443322    2567888888886654

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13189 peroxiredoxin; Provisional

Probab=98.13  E-value=2.3e-05  Score=64.76  Aligned_cols=89  Identities=6%  Similarity=0.051  Sum_probs=61.9

Q ss_pred             CCC-eEEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830           46 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS   95 (218)
Q Consensus        46 ~~k-~vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~   95 (218)
                      .++ .+|+.|+++||+.|....+.|.++.+++.  ++.++.|.++.                           ...+++.
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            356 45567889999999999999999988874  47777776542                           2356777


Q ss_pred             CCCC-------cCCEEEEEeCCCeeEEEEec----CccCHHHHHHHHHhhC
Q 027830           96 LNVH-------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT  135 (218)
Q Consensus        96 ~~I~-------~~Pti~l~~~g~~~~~~~~~----g~~~~~~l~~~l~~~~  135 (218)
                      ||+.       .+|+.++++.. |++.....    .+++.+++.+.|+...
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~-G~Ir~~~~~~~~~gr~~~eilr~l~alq  163 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPK-GIIRAILYYPQEVGRNMDEILRLVKALQ  163 (222)
T ss_pred             hCCCccccCCCceeEEEEECCC-CeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            8875       46888888533 33433322    4677888888886543

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.12  E-value=1.9e-05  Score=54.27  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=43.0

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----HHHHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|+++||++|+.+...|.++...   +.++.++.+.+.     .+.+..|+.++|++  |.+|.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            5779999999999999999988663   577777776542     35566788999996  45664

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.09  E-value=4.3e-05  Score=70.65  Aligned_cols=82  Identities=13%  Similarity=0.252  Sum_probs=70.3

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK  126 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~  126 (218)
                      +..-+..|+++.|++|......+.+++..+++|..-.||....++++++|+|.++|++++  +|+   ..+. |..+.++
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~-g~~~~~~  190 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE---EFHN-GRMDLAE  190 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc---EEEe-cCCCHHH
Confidence            445688999999999999999999999999999999999999999999999999999965  554   2233 7788888


Q ss_pred             HHHHHHhh
Q 027830          127 FKDALAKH  134 (218)
Q Consensus       127 l~~~l~~~  134 (218)
                      +.+.+.+.
T Consensus       191 ~~~~l~~~  198 (515)
T TIGR03140       191 LLEKLEET  198 (515)
T ss_pred             HHHHHhhc
Confidence            88888765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.09  E-value=4.7e-05  Score=58.03  Aligned_cols=39  Identities=33%  Similarity=0.722  Sum_probs=32.6

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEE
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV   84 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~V   84 (218)
                      ..+.+++.|+.++|++|+.+.+.+.++...++++.+..+
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~   42 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK   42 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence            467899999999999999999999998887776555443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.07  E-value=4.8e-05  Score=64.28  Aligned_cols=88  Identities=9%  Similarity=0.013  Sum_probs=64.1

Q ss_pred             CCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .++.+++.|| +.||+.|....+.|.++.+++.  ++.++.|.+|.                            +..+++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            4677888888 8999999999999999988874  46777666543                            245778


Q ss_pred             HCCCC-----cCCEEEEEe-CCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830           95 SLNVH-----VLPFFRFYR-GAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~-----~~Pti~l~~-~g~~~~~~~~----~g~~~~~~l~~~l~~~~  135 (218)
                      .||+.     ..|+.++++ +|.  +....    ..+++.+++.+.|+...
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~--I~~~~~~~~~~gr~v~eiLr~l~alq  225 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGV--VKHVAVYDLGLGRSVDETLRLFDAVQ  225 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence            88985     589999886 444  33221    24678888888876544

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.03  E-value=4.3e-05  Score=62.86  Aligned_cols=89  Identities=9%  Similarity=0.080  Sum_probs=63.3

Q ss_pred             CCCe-EEEEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830           46 GDKL-VVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS   95 (218)
Q Consensus        46 ~~k~-vlV~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~   95 (218)
                      .++. +|+.|+++||+.|....+.|.++.++|.  ++.++.|.++.                           +..+++.
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            3555 5789999999999999999999999874  58888777653                           2346777


Q ss_pred             CCCC-------cCCEEEEEeC-CCeeEEEE--ecCccCHHHHHHHHHhh
Q 027830           96 LNVH-------VLPFFRFYRG-AHGRVCSF--SCTNATIKKFKDALAKH  134 (218)
Q Consensus        96 ~~I~-------~~Pti~l~~~-g~~~~~~~--~~g~~~~~~l~~~l~~~  134 (218)
                      ||+.       .+|+++++.. |+.+...+  ...+++.+++.+.|+..
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8873       6799998863 43222221  11356788888888754

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.99  E-value=6e-05  Score=62.00  Aligned_cols=89  Identities=9%  Similarity=0.040  Sum_probs=62.2

Q ss_pred             CCCeEE-EEEECCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC---------------------------cHHHHHH
Q 027830           46 GDKLVV-VDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS   95 (218)
Q Consensus        46 ~~k~vl-V~Fya~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~   95 (218)
                      .+|.++ +.|+++||+.|....+.|.++.+++.  ++.++.|+++.                           +..+++.
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            355544 58899999999999999999998874  57887777653                           2356677


Q ss_pred             CCCC-------cCCEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830           96 LNVH-------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        96 ~~I~-------~~Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~  135 (218)
                      ||+.       ..|+.++++.+ |++....    ..+++.+++.+.|+...
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~-G~Ir~~~~~~~~~gr~~~eilr~l~alq  161 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDK-GTVRLILYYPMEIGRNIDEILRAIRALQ  161 (215)
T ss_pred             cCCcccccCCceeEEEEEECCC-CEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            7863       36888888533 2333321    24678999998887653

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.98  E-value=4.9e-05  Score=52.37  Aligned_cols=58  Identities=19%  Similarity=0.304  Sum_probs=43.0

Q ss_pred             CCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc---HHHHHHCCCCcCCEEEEEeCCC
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~---~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.-++.|+.+||++|++.+..|++.     ++.+..+|++++   ..+....+...+|.+.  .+|+
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~   66 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGK   66 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCE
Confidence            34447789999999999999988653     566777787655   3455556889999994  3664

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.96  E-value=5.8e-05  Score=60.99  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=54.4

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEE-----------------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV-----------------------------------------   84 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~V-----------------------------------------   84 (218)
                      ..+..++.|+.++|++|+++.+.+.+   ...++.+..+                                         
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~  152 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA  152 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence            36799999999999999999998876   1122222221                                         


Q ss_pred             ----eCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830           85 ----NYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus        85 ----d~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                          +++++..+++++||+++|+++ |.+|+  .  .. |..+.++|.++|
T Consensus       153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~--~--~~-G~~~~~~l~~~L  197 (197)
T cd03020         153 SCDNPVAANLALGRQLGVNGTPTIV-LADGR--V--VP-GAPPAAQLEALL  197 (197)
T ss_pred             ccCchHHHHHHHHHHcCCCcccEEE-ECCCe--E--ec-CCCCHHHHHhhC
Confidence                112345778899999999997 76775  2  22 667778887764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.94  E-value=5.4e-05  Score=49.16  Aligned_cols=54  Identities=20%  Similarity=0.348  Sum_probs=41.6

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH----HHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~----~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|+.+||++|+.....|++.     ++.+-.+|++.+++..    +..+..++|++.+  +|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence            5779999999999999888443     4888888888765433    3349999999975  653

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.94  E-value=0.00011  Score=59.57  Aligned_cols=89  Identities=13%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             CCCeEEEEEEC-CCChhHHhHHHHHHHHHHHCC--CcEEEEEeCcC----------------------------cHHHHH
Q 027830           46 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fya-~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .++.++|+||+ .||+.|....+.+.++.+++.  ++.++.|+++.                            ...+++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            47899999995 889999988899999988876  57888777652                            234677


Q ss_pred             HCCCC------cCCEEEEEeCCCeeEEEEe----cCccCHHHHHHHHHhhC
Q 027830           95 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~------~~Pti~l~~~g~~~~~~~~----~g~~~~~~l~~~l~~~~  135 (218)
                      .||+.      .+|+.++++.. +++....    ..+++.+++.+.|....
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~-G~i~~~~~~~~~~~r~~~e~l~~l~a~~  164 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPK-GMLRQITVNDMPVGRNVEEVLRLLEAFQ  164 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCC-CEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence            88875      36788888543 3443322    13456777777665443

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.88  E-value=0.0002  Score=60.26  Aligned_cols=84  Identities=13%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeC---------------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------   86 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~---------------------------------------   86 (218)
                      ..+.+++.|.-+.|++|+++...+.++.+. .+|.+..+..                                       
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            466789999999999999999998877654 2344333221                                       


Q ss_pred             -----------cCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHH
Q 027830           87 -----------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA  132 (218)
Q Consensus        87 -----------~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~  132 (218)
                                 +++..+.+++||+++|+|++-+ |+|++.... |..+.++|.+.|.
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d-~~G~~~~v~-G~~~~~~L~~~l~  249 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMD-KDGTLQQVV-GLPDPAQLAEIMG  249 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEEC-CCCCEEEec-CCCCHHHHHHHhC
Confidence                       0123467789999999998874 334443444 7778898888774

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.87  E-value=0.00016  Score=58.12  Aligned_cols=106  Identities=17%  Similarity=0.218  Sum_probs=79.4

Q ss_pred             cCcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l  106 (218)
                      ..|..|+..+...+....+.+-.|+|+.|...-+.|.-+...|++++.+|+.++|++|-.+..-   -.|--...||+++
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl~V  167 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTLLV  167 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeEEE
Confidence            5577777765555555555677899999999999999999999999999999999998765432   3455678999999


Q ss_pred             EeCCC--eeEE---EEecCccCHHHHHHHHHhhC
Q 027830          107 YRGAH--GRVC---SFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       107 ~~~g~--~~~~---~~~~g~~~~~~l~~~l~~~~  135 (218)
                      |..|.  ++.+   .+.+-+.+.+++..+|-+.-
T Consensus       168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag  201 (240)
T KOG3170|consen  168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG  201 (240)
T ss_pred             eecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence            99886  2222   22323567888888876654

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.86  E-value=5.8e-05  Score=52.35  Aligned_cols=80  Identities=13%  Similarity=0.163  Sum_probs=58.7

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      ++.|..+.|.-|..+...+.++....+ +.+-.||+++++.+..+|+. .+|.+.+=..++........+..+.+.|.+|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~   79 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW   79 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence            678999999999999999998766543 89999999999999999995 8999654321110001222267899999999


Q ss_pred             HH
Q 027830          131 LA  132 (218)
Q Consensus       131 l~  132 (218)
                      |+
T Consensus        80 L~   81 (81)
T PF05768_consen   80 LE   81 (81)
T ss_dssp             HH
T ss_pred             hC
Confidence            85

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.84  E-value=0.00024  Score=49.37  Aligned_cols=72  Identities=11%  Similarity=0.137  Sum_probs=53.2

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH---HHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  127 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~---~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l  127 (218)
                      +..|..+||++|++.+..|.+     .++.|-.+|++.+++..   +..|...+|++++  ++. .+     .+.+.+.|
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~-~~-----~Gf~~~~l   69 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL-SW-----SGFRPDMI   69 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE-EE-----ecCCHHHH
Confidence            567899999999999988855     36888899998776533   3457789999954  442 12     46778888


Q ss_pred             HHHHHhhC
Q 027830          128 KDALAKHT  135 (218)
Q Consensus       128 ~~~l~~~~  135 (218)
                      .+.+..+.
T Consensus        70 ~~~~~~~~   77 (81)
T PRK10329         70 NRLHPAPH   77 (81)
T ss_pred             HHHHHhhh
Confidence            88877654

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.81  E-value=7.8e-05  Score=49.13  Aligned_cols=54  Identities=19%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHH----HHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l----~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|+++||++|+.+...|.+..     +.+..+|++.+.+.    .+..+...+|++  |.+|+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~   59 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            56799999999999999988764     67778888776543    334567788877  34654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.73  E-value=0.00014  Score=49.12  Aligned_cols=66  Identities=14%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHC---CCCcCCEEEEEeCCCeeEEEEecCccCHHHHH
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK  128 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~---~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~  128 (218)
                      ..|..+||++|+..+..|++.     ++.|-.+|+++++.....+   |..++|++++  +|...+     ++.+.+.|.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~~~-----~G~~~~~~~   69 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDLSW-----SGFRPDKLK   69 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCcEE-----eccCHHHHH
Confidence            568899999999999988753     6788888988877655544   8889999744  443112     456666665


Q ss_pred             H
Q 027830          129 D  129 (218)
Q Consensus       129 ~  129 (218)
                      +
T Consensus        70 ~   70 (72)
T TIGR02194        70 A   70 (72)
T ss_pred             h
Confidence            4

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.72  E-value=0.00011  Score=53.06  Aligned_cols=54  Identities=17%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH-------HHHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-------MCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~-------l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|..+||++|++....|.++     ++.+..+|++.+++       +.+..|...+|.+  |.+|+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~   70 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK   70 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence            6669999999999999888765     34445555554422       3334467899997  45664

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.72  E-value=0.003  Score=47.06  Aligned_cols=105  Identities=15%  Similarity=0.174  Sum_probs=72.0

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHH-HH---CCCcEEEEEeCc-----CcHHHHHHCCC
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EM---NPDVQFLQVNYE-----EHKSMCYSLNV   98 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la-~~---~~~v~~~~Vd~~-----~~~~l~~~~~I   98 (218)
                      ..+.+++. .|...+.+  .+.+||.|=..+  +--.-+..|.+++ +.   -+++-++.|-+.     +|.+++++|+|
T Consensus         5 G~v~LD~~-tFdKvi~k--f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i   79 (126)
T PF07912_consen    5 GCVPLDEL-TFDKVIPK--FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI   79 (126)
T ss_dssp             TSEEESTT-HHHHHGGG--SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred             ceeeccce-ehhheecc--CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence            34556554 57777744  789999996544  2223345666666 32   345888888774     48899999999


Q ss_pred             --CcCCEEEEEeCCCeeEEEE--ecCccCHHHHHHHHHhhCCCC
Q 027830           99 --HVLPFFRFYRGAHGRVCSF--SCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus        99 --~~~Pti~l~~~g~~~~~~~--~~g~~~~~~l~~~l~~~~~~~  138 (218)
                        ..+|.+++|..|....+.+  . +..+.+.|..|+.++.+..
T Consensus        80 ~ke~fPv~~LF~~~~~~pv~~p~~-~~~t~~~l~~fvk~~t~~y  122 (126)
T PF07912_consen   80 DKEDFPVIYLFVGDKEEPVRYPFD-GDVTADNLQRFVKSNTGLY  122 (126)
T ss_dssp             SCCC-SEEEEEESSTTSEEEE-TC-S-S-HHHHHHHHHHTSS--
T ss_pred             CcccCCEEEEecCCCCCCccCCcc-CCccHHHHHHHHHhCCCee
Confidence              5699999999776677877  4 7899999999999997643

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.70  E-value=0.00066  Score=52.36  Aligned_cols=81  Identities=21%  Similarity=0.377  Sum_probs=60.8

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHC--CC-cEEEEEeCcC----------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PD-VQFLQVNYEE----------------------------------   88 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~--~~-v~~~~Vd~~~----------------------------------   88 (218)
                      ..+.+|+.|+...|++|+.+.+.+.++.+++  ++ +.|...++-.                                  
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4678999999999999999999999998887  44 7777765410                                  


Q ss_pred             ----------------------------------cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830           89 ----------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus        89 ----------------------------------~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                                                        ....+++++|.++|||++  +|+  ..  . +..+.++|.+.|++
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~--~~--~-~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK--YV--V-GPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC--EE--E-TTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE--Ee--C-CCCCHHHHHHHHcC
Confidence                                              012345678999999987  776  22  3 78999999999875

...

>PHA03050 glutaredoxin; Provisional

Probab=97.69  E-value=0.00015  Score=53.24  Aligned_cols=59  Identities=10%  Similarity=0.124  Sum_probs=41.2

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-c----HHHHHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-H----KSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~----~~l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|..+||++|++....|+++.-.++.+..+.||-.. .    ..+.+..|..++|++  |.+|+
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~   78 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKT   78 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCE
Confidence            66799999999999999998876544444555554311 2    345566788899999  34664

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.69  E-value=0.00032  Score=47.15  Aligned_cols=66  Identities=11%  Similarity=0.244  Sum_probs=45.7

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH---HHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  127 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~---l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l  127 (218)
                      ++.|..+||+.|.+.+..|.+.     ++.+..+|++.+..   +....|...+|.+  |.+|+  .+    |  ..++|
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~--~i----g--g~~~l   67 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGE--LI----G--GSDDL   67 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCE--EE----e--CHHHH
Confidence            6779999999999998888753     56777777766542   3344588899997  44664  22    2  24666


Q ss_pred             HHHH
Q 027830          128 KDAL  131 (218)
Q Consensus       128 ~~~l  131 (218)
                      .+||
T Consensus        68 ~~~l   71 (72)
T cd03029          68 EKYF   71 (72)
T ss_pred             HHHh
Confidence            6665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=97.60  E-value=0.00084  Score=52.81  Aligned_cols=87  Identities=14%  Similarity=0.136  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCc-cCHHHHHHHHHhhCCCCCCC
Q 027830           64 ALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKDALAKHTPDRCGL  141 (218)
Q Consensus        64 ~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~-~~~~~l~~~l~~~~~~~~~~  141 (218)
                      .+...|.++++.+.+ +.|+.++   +.++++.+++.. |++++|+++.++...|. |. .+.++|.+||..+.-     
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~-~~~~~~~~l~~fI~~~~~-----   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYD-GDKFTPEELKKFIKKNSF-----   76 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEES-SSTTSHHHHHHHHHHHSS-----
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecc-cccCCHHHHHHHHHHhcc-----
Confidence            345678889998874 9999887   677899999999 99999998655567777 55 799999999999984     


Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 027830          142 GPTKGLEEKELLALAANKD  160 (218)
Q Consensus       142 ~~~~~l~~~~l~~~~~~~~  160 (218)
                      +.+..++.+++..+...+.
T Consensus        77 P~v~~~t~~n~~~~~~~~~   95 (184)
T PF13848_consen   77 PLVPELTPENFEKLFSSPK   95 (184)
T ss_dssp             TSCEEESTTHHHHHHSTSS
T ss_pred             ccccccchhhHHHHhcCCC
Confidence            3467778888888888763

...

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.58  E-value=0.0002  Score=49.00  Aligned_cols=54  Identities=15%  Similarity=0.306  Sum_probs=39.2

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHH----HHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l----~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|+.+||++|......|++.     ++.+-.+|++.++..    .+..+..++|++  |.+|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~   58 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV   58 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            3568999999999999999764     456666677666544    344577899997  34664

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.57  E-value=0.00091  Score=48.05  Aligned_cols=100  Identities=15%  Similarity=0.234  Sum_probs=74.4

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeCcC--cHHHHHHCCCC----cC
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVH----VL  101 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~--~~~l~~~~~I~----~~  101 (218)
                      +..|++..+|..++..  ...|+|.|..+--..-.. ...+.++++...+ -.++.|||.+  ...+|+++.|.    --
T Consensus         3 ie~i~d~KdfKKLLRT--r~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~   79 (112)
T cd03067           3 IEDISDHKDFKKLLRT--RNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK   79 (112)
T ss_pred             cccccchHHHHHHHhh--cCcEEEEEecchhhHHHH-HHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence            3468888999999865  567777777665444444 4488888888776 7899999986  78899999998    55


Q ss_pred             CE-EEEEeCCCeeEEEEecCccCHHHHHHHHHh
Q 027830          102 PF-FRFYRGAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       102 Pt-i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~  133 (218)
                      |. +.-|++|. .-..|. ...+...|+.|++.
T Consensus        80 ~~~LkHYKdG~-fHkdYd-R~~t~kSmv~FlrD  110 (112)
T cd03067          80 PVELKHYKDGD-FHTEYN-RQLTFKSMVAFLRD  110 (112)
T ss_pred             cchhhcccCCC-cccccc-chhhHHHHHHHhhC
Confidence            65 55688886 333444 57789999999864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.57  E-value=0.00041  Score=46.72  Aligned_cols=54  Identities=13%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHH----HCCCC-cCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY----SLNVH-VLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~----~~~I~-~~Pti~l~~~g~  111 (218)
                      ++.|+.+||++|......|++.     ++.+..+|++.+++..+    ..+.. ++|++  |.+|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCE
Confidence            5679999999999999888763     57777888877654433    35666 89977  34664

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.55  E-value=0.00046  Score=46.54  Aligned_cols=54  Identities=15%  Similarity=0.327  Sum_probs=41.3

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|+.+||+.|++....|++.     ++.+..+|+++++.    +.+..+-..+|++  |.+|+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~   60 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEK   60 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            5679999999999999888863     57788888887664    5555677889998  34654

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.52  E-value=0.0016  Score=47.98  Aligned_cols=89  Identities=12%  Similarity=0.045  Sum_probs=67.2

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHH---CCC-cEEEEEeCcCcHHHHHHCCCCc--CCEEEEEeCCCeeEEEEec
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPD-VQFLQVNYEEHKSMCYSLNVHV--LPFFRFYRGAHGRVCSFSC  119 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~---~~~-v~~~~Vd~~~~~~l~~~~~I~~--~Pti~l~~~g~~~~~~~~~  119 (218)
                      ++.+..+.|+  .-..-..+...+.+++++   +.+ +.|+.+|.+......+.||+..  +|.+++...+.........
T Consensus        15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~   92 (111)
T cd03072          15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE   92 (111)
T ss_pred             CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence            4555555666  333347788999999999   987 9999999999888899999997  9999998654312222122


Q ss_pred             CccCHHHHHHHHHhhCC
Q 027830          120 TNATIKKFKDALAKHTP  136 (218)
Q Consensus       120 g~~~~~~l~~~l~~~~~  136 (218)
                      +..+.+.|.+|+++.+.
T Consensus        93 ~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          93 DVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             cccCHHHHHHHHHHHhc
Confidence            67889999999998874

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.47  E-value=0.0011  Score=52.00  Aligned_cols=37  Identities=32%  Similarity=0.603  Sum_probs=31.8

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEE
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFL   82 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~   82 (218)
                      ..++.++.|+...|++|+.+.+.+.++.+++++ +.|.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~   51 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE   51 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence            478899999999999999999999999888764 4443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.47  E-value=0.00081  Score=49.15  Aligned_cols=92  Identities=12%  Similarity=0.025  Sum_probs=62.1

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCC--ChhHHhHHHHHHHHHHHCCC-cEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~w--C~~C~~~~p~l~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      +..++ .+++.+.+..  +...+++|..+.  |+.|....=++=||.+.+++ +..+.|+-.....+..+||+..+|+++
T Consensus        11 ~~~vd-~~~ld~~l~~--~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv   87 (107)
T PF07449_consen   11 WPRVD-ADTLDAFLAA--PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV   87 (107)
T ss_dssp             EEEE--CCCHHHHHHC--CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred             Ceeec-hhhHHHHHhC--CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence            34444 4466677754  555555554433  44455555578889999988 777777877788999999999999999


Q ss_pred             EEeCCCeeEEEEecCccCHH
Q 027830          106 FYRGAHGRVCSFSCTNATIK  125 (218)
Q Consensus       106 l~~~g~~~~~~~~~g~~~~~  125 (218)
                      ||++|+  ......|-++-.
T Consensus        88 f~R~g~--~lG~i~gi~dW~  105 (107)
T PF07449_consen   88 FFRDGR--YLGAIEGIRDWA  105 (107)
T ss_dssp             EEETTE--EEEEEESSSTHH
T ss_pred             EEECCE--EEEEecCeeccc
Confidence            999986  455444555543

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.42  E-value=0.00057  Score=47.42  Aligned_cols=58  Identities=22%  Similarity=0.423  Sum_probs=43.4

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEeC--cC------------------------------cHHHHHHCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY--EE------------------------------HKSMCYSLN   97 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd~--~~------------------------------~~~l~~~~~   97 (218)
                      ++.|+.++|++|..+.+.+.++....++ +.+....+  ..                              +..++..+|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            4679999999999999999999765544 55554433  21                              224567889


Q ss_pred             CCcCCEEEEEe
Q 027830           98 VHVLPFFRFYR  108 (218)
Q Consensus        98 I~~~Pti~l~~  108 (218)
                      +.++||+++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999998764

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.41  E-value=0.002  Score=47.40  Aligned_cols=75  Identities=9%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             CChhHHhHHHHHHHHHHHCC-C-cEEEEEeCcCcHHHHHHCCCCc----CCEEEEEeCCCeeEEEEecCcc-CHHHHHHH
Q 027830           58 GCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRGAHGRVCSFSCTNA-TIKKFKDA  130 (218)
Q Consensus        58 wC~~C~~~~p~l~~la~~~~-~-v~~~~Vd~~~~~~l~~~~~I~~----~Pti~l~~~g~~~~~~~~~g~~-~~~~l~~~  130 (218)
                      .-..-..+...+.++|+.++ + +.|+.+|.++.....+.||+..    +|.++++..+..+. ... +.. +.+.|.+|
T Consensus        29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY-~~~-~~~~t~e~i~~F  106 (111)
T cd03073          29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKY-VME-EEFSDVDALEEF  106 (111)
T ss_pred             ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCcc-CCC-cccCCHHHHHHH
Confidence            33455678899999999998 5 9999999998888899999984    99999986432122 122 566 89999999


Q ss_pred             HHhh
Q 027830          131 LAKH  134 (218)
Q Consensus       131 l~~~  134 (218)
                      +++.
T Consensus       107 ~~~f  110 (111)
T cd03073         107 LEDF  110 (111)
T ss_pred             HHHh
Confidence            9875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.40  E-value=0.0021  Score=59.53  Aligned_cols=123  Identities=11%  Similarity=0.081  Sum_probs=83.3

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~  115 (218)
                      +++...+.+- .++|-+.++.+.|..|..+...++++++.-+.+.+...+..           ...|++.+..+|+..-+
T Consensus         8 ~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i   75 (517)
T PRK15317          8 TQLKQYLELL-ERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGV   75 (517)
T ss_pred             HHHHHHHHhC-CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence            4555555543 44555555555899999999999999998776766443211           34899999877653335


Q ss_pred             EEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhC---CCceeeeCCCCCCCCC
Q 027830          116 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN---KDLSFNYTPKPHPMPA  174 (218)
Q Consensus       116 ~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~v~~y~p~~~~~p~  174 (218)
                      .|. |-..-.+|..||...+...   ++-..++++..+.+..-   -++.+|+++.|..||.
T Consensus        76 ~f~-g~P~g~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~  133 (517)
T PRK15317         76 RFA-GIPMGHEFTSLVLALLQVG---GHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPD  133 (517)
T ss_pred             EEE-ecCccHHHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHH
Confidence            666 7777788888887776433   22345566655555442   2388999999999996

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=97.25  E-value=0.0023  Score=52.15  Aligned_cols=39  Identities=18%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CCeEEEEEECCCChhHHhHHHHH---HHHHHHCCC-cEEEEEe
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPD-VQFLQVN   85 (218)
Q Consensus        47 ~k~vlV~Fya~wC~~C~~~~p~l---~~la~~~~~-v~~~~Vd   85 (218)
                      +++.||.|+.-.|++|..+.+.+   ..+.+.+++ +.++++.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~   79 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH   79 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence            56779999999999999999876   788888874 6665543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.23  E-value=0.0046  Score=57.23  Aligned_cols=124  Identities=13%  Similarity=0.074  Sum_probs=83.1

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~  115 (218)
                      +++...+.+-.+ +|-+.++.+-|..|..+...++++++.-+.+.+...+.+.          ...|++.++.+|+..-+
T Consensus         8 ~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i   76 (515)
T TIGR03140         8 AQLKSYLASLEN-PVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGI   76 (515)
T ss_pred             HHHHHHHHhcCC-CEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence            455555554334 5544444447999999999999999987777775444221          35699999877653335


Q ss_pred             EEecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhC---CCceeeeCCCCCCCCC
Q 027830          116 SFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAAN---KDLSFNYTPKPHPMPA  174 (218)
Q Consensus       116 ~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~v~~y~p~~~~~p~  174 (218)
                      .|. |-..-.+|..||...+...   ++-..++++..+.+..-   -.+.+|+++.|..||.
T Consensus        77 ~f~-g~P~g~Ef~s~i~~i~~~~---~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~  134 (515)
T TIGR03140        77 RFA-GIPGGHEFTSLVLAILQVG---GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPD  134 (515)
T ss_pred             EEE-ecCCcHHHHHHHHHHHHhc---CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHH
Confidence            565 6677778888887766433   22355666665555542   2388999999999996

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.22  E-value=0.0029  Score=52.44  Aligned_cols=61  Identities=23%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             cccccCcEEecChh--hHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCC-cEEEEEe
Q 027830           23 PLVHRLALELGRHK--DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVN   85 (218)
Q Consensus        23 ~l~~~~v~~i~s~~--~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~-v~~~~Vd   85 (218)
                      ...+..++.++...  .+.+..  .+++|.+++|.+-.|++-..-...+++++++|.+ +.|+.|-
T Consensus        78 ~APns~vv~l~g~~~~~ildf~--~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY  141 (237)
T PF00837_consen   78 PAPNSPVVTLDGQRSCRILDFA--KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY  141 (237)
T ss_pred             CCCCCceEeeCCCcceeHHHhc--cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence            34455666665543  233443  4699999999999999999999999999999987 5565543

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0025  Score=54.54  Aligned_cols=109  Identities=15%  Similarity=0.216  Sum_probs=80.2

Q ss_pred             cCcEEecChhhHHHHHHh-cCCCeEEEEEECC----CChhHHhHHHHHHHHHHHCC---------CcEEEEEeCcCcHHH
Q 027830           27 RLALELGRHKDLVESLWH-AGDKLVVVDFFSP----GCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEHKSM   92 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~-~~~k~vlV~Fya~----wC~~C~~~~p~l~~la~~~~---------~v~~~~Vd~~~~~~l   92 (218)
                      ..++.+++. .|...+.. ..+-.++|+|.|.    .|.-|+.....+.-+++.+.         .+=|..||.++.+++
T Consensus        40 ~~VI~~n~d-~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~  118 (331)
T KOG2603|consen   40 SGVIRMNDD-KFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV  118 (331)
T ss_pred             CCeEEecCc-chhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence            456666664 56666652 2355678888875    59999999999998888641         167899999999999


Q ss_pred             HHHCCCCcCCEEEEEeCCCee------EEEEecCccCHHHHHHHHHhhCCC
Q 027830           93 CYSLNVHVLPFFRFYRGAHGR------VCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus        93 ~~~~~I~~~Pti~l~~~g~~~------~~~~~~g~~~~~~l~~~l~~~~~~  137 (218)
                      -+.++++.+|++++|...++.      ......| ..++++.+|+++....
T Consensus       119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~tkv  168 (331)
T KOG2603|consen  119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLG-FEAEQIAQFVADRTKV  168 (331)
T ss_pred             HHHhcccCCCeEEEeCCCccccccCccchhhhcc-hhHHHHHHHHHHhhhh
Confidence            999999999999999544322      2223323 3499999999988743

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.0017  Score=44.88  Aligned_cols=66  Identities=15%  Similarity=0.289  Sum_probs=43.5

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-----HHHHHC-CCCcCCEEEEEeCCCeeEEEEecCccCH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSL-NVHVLPFFRFYRGAHGRVCSFSCTNATI  124 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-----~l~~~~-~I~~~Pti~l~~~g~~~~~~~~~g~~~~  124 (218)
                      ++.|.-+||++|++....|.+.     ++.|..+|++.+.     +..++. |...+|.|+  .+|+  .   ..|..+.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~--~---igg~~d~   70 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGK--H---VGGCDDL   70 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCE--E---EeCcccH
Confidence            5678999999999999888733     4666666665544     344444 789999985  3553  1   1244555


Q ss_pred             HHHH
Q 027830          125 KKFK  128 (218)
Q Consensus       125 ~~l~  128 (218)
                      +.+.
T Consensus        71 ~~~~   74 (80)
T COG0695          71 DALE   74 (80)
T ss_pred             HHHH
Confidence            5554

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.08  E-value=0.0047  Score=44.28  Aligned_cols=48  Identities=23%  Similarity=0.243  Sum_probs=35.2

Q ss_pred             CCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH----HHCCCCcCCEEEEEeCCC
Q 027830           57 PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        57 ~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~----~~~~I~~~Pti~l~~~g~  111 (218)
                      +||++|++....|.+.     ++.+..+|+++++++.    +..|...+|.+  |.+|+
T Consensus        25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~   76 (97)
T TIGR00365        25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGE   76 (97)
T ss_pred             CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence            8999999999988775     4667788887665443    44566788887  34664

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10638 glutaredoxin 3; Provisional

Probab=97.07  E-value=0.0023  Score=44.29  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I~~~Pti~l~~~g~  111 (218)
                      ++.|..+||++|++....|++.     ++.+..+|++.+.+    +.+..+...+|++  |.+|+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~   61 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQ   61 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            5678899999999999888764     46677778876653    3445577889987  33654

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.93  E-value=0.018  Score=41.62  Aligned_cols=95  Identities=17%  Similarity=0.205  Sum_probs=65.5

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~  107 (218)
                      +.+|++.+++.+.+.  .++.++|-|+..--.   .....+.++++.+. +..|+...   +..+...+++  .|++++|
T Consensus         2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~   71 (104)
T cd03069           2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF   71 (104)
T ss_pred             ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence            456788888888774  366777777766443   35667888888884 58886654   3566788888  7888888


Q ss_pred             eC------CCeeEEEEecCccCHHHHHHHHHhh
Q 027830          108 RG------AHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus       108 ~~------g~~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                      +.      -......|. |..+.+.|.+||...
T Consensus        72 ~p~~~~~k~de~~~~y~-g~~~~~~l~~fi~~~  103 (104)
T cd03069          72 RPPRLSNKFEDSSVKFD-GDLDSSKIKKFIREN  103 (104)
T ss_pred             echhhhcccCccccccc-CcCCHHHHHHHHHhh
Confidence            33      111223455 777899999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.89  E-value=0.03  Score=40.21  Aligned_cols=98  Identities=12%  Similarity=0.159  Sum_probs=67.2

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHC-CCcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~-~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~  107 (218)
                      +..|++.+++...+.. .+..++|-|+..--.   .....|.++++.+ .+..|+...   +..+...+++. .|++++|
T Consensus         2 v~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~   73 (102)
T cd03066           2 VEIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY   73 (102)
T ss_pred             ceEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence            5678888889888841 355666666665433   3456788888888 458886544   45667778765 7999999


Q ss_pred             eCCCeeEEEEecCccCHHHHHHHHHhh
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~l~~~  134 (218)
                      ++.......|..|..+.+.|.+||...
T Consensus        74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          74 EPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            762223345633678999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.80  E-value=0.0048  Score=43.47  Aligned_cols=48  Identities=23%  Similarity=0.325  Sum_probs=35.5

Q ss_pred             CCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHH----HHHCCCCcCCEEEEEeCCC
Q 027830           57 PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        57 ~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l----~~~~~I~~~Pti~l~~~g~  111 (218)
                      +||++|++....|.+.     ++.|..+|++.+.++    .+..|...+|.+  |.+|+
T Consensus        21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~   72 (90)
T cd03028          21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE   72 (90)
T ss_pred             CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence            7999999999888776     366777777666544    344577889997  44664

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10824 glutaredoxin-4; Provisional

Probab=96.64  E-value=0.01  Score=44.01  Aligned_cols=48  Identities=15%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             CCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHH----CCCCcCCEEEEEeCCC
Q 027830           57 PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH  111 (218)
Q Consensus        57 ~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~----~~I~~~Pti~l~~~g~  111 (218)
                      |||++|++....|.++.     +.+..+|++.+.++...    -|...+|.+  |.+|+
T Consensus        28 p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~   79 (115)
T PRK10824         28 PSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGE   79 (115)
T ss_pred             CCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCE
Confidence            69999999999988763     44555676666554443    244455554  55775

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=96.30  E-value=0.0018  Score=55.39  Aligned_cols=121  Identities=16%  Similarity=0.225  Sum_probs=85.7

Q ss_pred             HHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEe-CcCcHHHHHHCCCCcCCEEEEEeCCCeeEEE
Q 027830           38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS  116 (218)
Q Consensus        38 ~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd-~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~  116 (218)
                      ..+.+..+...++-+.||++||+..+..+|.+.-....|+.+....++ ...-+.+..+|++.+.|++.+...--  ...
T Consensus        67 l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~--~~~  144 (319)
T KOG2640|consen   67 LLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC--PAS  144 (319)
T ss_pred             HHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecccc--chh
Confidence            334443444668899999999999999999999888888755444443 23456778899999999999885543  344


Q ss_pred             EecCccCHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHHhCCCceeeeCCCCCC
Q 027830          117 FSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAANKDLSFNYTPKPHP  171 (218)
Q Consensus       117 ~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~v~~y~p~~~~  171 (218)
                      +. |.++...|++|..+.++-...+      +..+...    .-..++|.||.+.
T Consensus       145 ~~-~~r~l~sLv~fy~~i~~~~v~i------e~~d~~~----~~~~~ry~~~~~~  188 (319)
T KOG2640|consen  145 YR-GERDLASLVNFYTEITPMSVLI------EILDCTS----CLEPVRYVPEGGP  188 (319)
T ss_pred             hc-ccccHHHHHHHHHhhccchhcc------cccCccc----ceeeeEeccccCc
Confidence            55 8999999999999998733111      1111111    2467899998875

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=96.24  E-value=0.025  Score=44.95  Aligned_cols=29  Identities=28%  Similarity=0.606  Sum_probs=23.1

Q ss_pred             EEECCCChhHHhHHHHHHHHHHHCCC-cEE
Q 027830           53 DFFSPGCGGCKALHPKICQLAEMNPD-VQF   81 (218)
Q Consensus        53 ~Fya~wC~~C~~~~p~l~~la~~~~~-v~~   81 (218)
                      +|.-|+|+.|-.+.|.|.++..+|++ +.+
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~   31 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEF   31 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEE
Confidence            69999999999999999999999986 433

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=96.18  E-value=0.014  Score=52.55  Aligned_cols=54  Identities=15%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHH---HH---------CCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YS---------LNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~---~~---------~~I~~~Pti~l~~~g~  111 (218)
                      ++.|..+||++|++....|.+.     ++.+..||+++++...   ++         .|.+++|++.+  +|+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~   69 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV   69 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence            6779999999999999888764     5788888888766322   22         36788999854  553

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=96.09  E-value=0.22  Score=35.52  Aligned_cols=85  Identities=14%  Similarity=0.148  Sum_probs=56.8

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~  115 (218)
                      +++...+.+-.+...++.|..+. ..|..+...++++++.-+.+.+...+...           ..|++.+..+|+..-+
T Consensus         8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gI   75 (94)
T cd02974           8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGI   75 (94)
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence            44555555444555566666655 99999999999999987666665433221           4799999877642225


Q ss_pred             EEecCccCHHHHHHHHHh
Q 027830          116 SFSCTNATIKKFKDALAK  133 (218)
Q Consensus       116 ~~~~g~~~~~~l~~~l~~  133 (218)
                      .|. |-..-.++..||..
T Consensus        76 rF~-GiP~GhEf~Slila   92 (94)
T cd02974          76 RFA-GIPMGHEFTSLVLA   92 (94)
T ss_pred             EEE-ecCCchhHHHHHHH
Confidence            565 66666777777754

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PTZ00062 glutaredoxin; Provisional

Probab=96.05  E-value=0.035  Score=45.33  Aligned_cols=49  Identities=16%  Similarity=0.102  Sum_probs=34.2

Q ss_pred             CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHH----CCCCcCCEEEEEeCCC
Q 027830           56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH  111 (218)
Q Consensus        56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~----~~I~~~Pti~l~~~g~  111 (218)
                      .|||++|+++...|.+.     ++.+..+|++++.++.+.    .|...+|.+.  .+|+
T Consensus       125 ~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~  177 (204)
T PTZ00062        125 FPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE  177 (204)
T ss_pred             CCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence            37999999999888754     477788888877655433    3455666654  4664

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.069  Score=38.86  Aligned_cols=56  Identities=16%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH-HHH----HHCCCCcCCEEEEEeCCC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMC----YSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~-~l~----~~~~I~~~Pti~l~~~g~  111 (218)
                      +|.|..+||++|+++...|.++   -.+..++.+|-+.+. ++-    +.-+.+.+|.+  |.+|+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk   76 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGK   76 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCE
Confidence            5569999999999988888772   123677777765443 222    22345678876  45665

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.19  Score=39.29  Aligned_cols=89  Identities=17%  Similarity=0.098  Sum_probs=58.5

Q ss_pred             cCCCeEEEEEE-CCCChhHHhHHHHHHHHHHHCC--CcEEEEEeCc---------------------CcHHHHHHCCCCc
Q 027830           45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHV  100 (218)
Q Consensus        45 ~~~k~vlV~Fy-a~wC~~C~~~~p~l~~la~~~~--~v~~~~Vd~~---------------------~~~~l~~~~~I~~  100 (218)
                      ..++.||++|| ..|++.|-...-.|++...++.  ++.++-|..|                     .+..+++.||+..
T Consensus        28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~  107 (157)
T COG1225          28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG  107 (157)
T ss_pred             hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence            35779999999 7899999888888887777665  4777777654                     3567888888743


Q ss_pred             ------------CCEEEEEeCCCeeEEEEec---CccCHHHHHHHHHhh
Q 027830          101 ------------LPFFRFYRGAHGRVCSFSC---TNATIKKFKDALAKH  134 (218)
Q Consensus       101 ------------~Pti~l~~~g~~~~~~~~~---g~~~~~~l~~~l~~~  134 (218)
                                  .++..++..+ |++.....   -.-..+++.+.|++.
T Consensus       108 ~k~~~gk~~~~~~R~TfvId~d-G~I~~~~~~v~~~~h~~~vl~~l~~l  155 (157)
T COG1225         108 EKKMYGKEYMGIERSTFVIDPD-GKIRYVWRKVKVKGHADEVLAALKKL  155 (157)
T ss_pred             ccccCccccccccceEEEECCC-CeEEEEecCCCCcccHHHHHHHHHHh
Confidence                        3555555432 33333221   233466777777654

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.042  Score=51.85  Aligned_cols=73  Identities=14%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHH-H--HHHHHHCC-CcEEEEEeCcCcHHHHHHCC--------CCcCCE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK-I--CQLAEMNP-DVQFLQVNYEEHKSMCYSLN--------VHVLPF  103 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~-l--~~la~~~~-~v~~~~Vd~~~~~~l~~~~~--------I~~~Pt  103 (218)
                      +.|...-  ..+||++|....+||..|+.|... |  .++++... +..-++||-++.|++-+.|.        --++|-
T Consensus        34 eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL  111 (667)
T COG1331          34 EAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL  111 (667)
T ss_pred             HHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence            4455544  359999999999999999998742 2  24444332 37888999998887766654        558999


Q ss_pred             EEEEeCC
Q 027830          104 FRFYRGA  110 (218)
Q Consensus       104 i~l~~~g  110 (218)
                      .+|...+
T Consensus       112 tVfLTPd  118 (667)
T COG1331         112 TVFLTPD  118 (667)
T ss_pred             eEEECCC
Confidence            8888544

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.36  E-value=0.63  Score=33.78  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=62.1

Q ss_pred             cEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~  107 (218)
                      +..|++.+++...+.. .++.++|-|+..--.   .....+.++|+.+. ++.|+...   +..+..++++. .|.+++|
T Consensus         2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~   73 (107)
T cd03068           2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF   73 (107)
T ss_pred             ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence            5678888889887754 325666666665433   35567888898884 58886644   34667788875 5777777


Q ss_pred             eCCC------eeEEEEecCc-cCHHH-HHHHHHhh
Q 027830          108 RGAH------GRVCSFSCTN-ATIKK-FKDALAKH  134 (218)
Q Consensus       108 ~~g~------~~~~~~~~g~-~~~~~-l~~~l~~~  134 (218)
                      +...      .....|. |. .+.++ |.+||+++
T Consensus        74 rp~~~~~k~e~~~~~~~-~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          74 QPEKFQSKYEPKSHVLN-KKDSTSEDELKDFFKEH  107 (107)
T ss_pred             CcHHHhhhcCcceeeee-ccccchHHHHHHHHhcC
Confidence            4322      1123343 44 45545 99999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=95.02  E-value=0.37  Score=37.95  Aligned_cols=32  Identities=28%  Similarity=0.484  Sum_probs=27.3

Q ss_pred             EEEEEECCCChhHHhHHHHHHHHHHHCCCcEE
Q 027830           50 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQF   81 (218)
Q Consensus        50 vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~   81 (218)
                      .|..||..-|++|....+.+.++.+.++++.+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i   32 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEI   32 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence            36789999999999999999999998866444

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=94.89  E-value=0.052  Score=42.17  Aligned_cols=51  Identities=20%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             CeEEEEEECCCChhHHhH-HHHHHHHHHHCC--Cc-EEEEEeCcC---cHHHHHHCCC
Q 027830           48 KLVVVDFFSPGCGGCKAL-HPKICQLAEMNP--DV-QFLQVNYEE---HKSMCYSLNV   98 (218)
Q Consensus        48 k~vlV~Fya~wC~~C~~~-~p~l~~la~~~~--~v-~~~~Vd~~~---~~~l~~~~~I   98 (218)
                      ..+|+.|.+.||+.|... .+.|.+..+++.  ++ .++.|..+.   +...++++++
T Consensus        31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence            444555558999999988 888888888764  46 588887764   3334455555

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=94.72  E-value=0.19  Score=33.62  Aligned_cols=76  Identities=13%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      +..|+.++|+.|++.+-.+.+..-.   +.+..+|.....++ +.-+...+|++..=.+|.+.+.      .....|.++
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~gi~---y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I~~y   71 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHGIP---YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------VDSSVIIST   71 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCc---eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------EcHHHHHHH
Confidence            4568889999999998766555322   23333443222333 3345568999874322222222      334667788


Q ss_pred             HHhhCC
Q 027830          131 LAKHTP  136 (218)
Q Consensus       131 l~~~~~  136 (218)
                      |.++++
T Consensus        72 L~~~~~   77 (77)
T cd03040          72 LKTYLG   77 (77)
T ss_pred             HHHHcC
Confidence            877653

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=93.44  E-value=0.14  Score=37.71  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=30.1

Q ss_pred             CeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeC
Q 027830           48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY   86 (218)
Q Consensus        48 k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~   86 (218)
                      |.+++.|.-|.|+-|+.....+.++.++|   .+.+||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY---~ilrVNI   37 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY---DILRVNI   37 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc---cEEEEEe
Confidence            56899999999999999999998888886   4555554

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=93.42  E-value=0.39  Score=32.53  Aligned_cols=57  Identities=5%  Similarity=-0.005  Sum_probs=46.7

Q ss_pred             EEEEEECCCChhHHhHHHHHHHHHHHCC-C-cEEEEEeCcCcHHHHHHCCCCcCCEEEE
Q 027830           50 VVVDFFSPGCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        50 vlV~Fya~wC~~C~~~~p~l~~la~~~~-~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l  106 (218)
                      .+..|-+..-+..++....+.++.+.+- + +.+--||+.++++++..++|-.+||++=
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk   61 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK   61 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence            4555666666888888888888887763 3 8888999999999999999999999763

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=93.03  E-value=0.38  Score=31.72  Aligned_cols=51  Identities=10%  Similarity=0.069  Sum_probs=35.4

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-cHHHHHHCCCCcCCEEE
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pti~  105 (218)
                      +.|+.+||+.|++.+-.+.+..-.   +.+..+|... .+++.+......+|++.
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~   53 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLV   53 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence            357899999999988777655332   5666666543 34566666677899995

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=92.99  E-value=0.46  Score=36.73  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=37.1

Q ss_pred             EEEEECC------CChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHH----HHHHCCC----CcCCEEEEEeCCC
Q 027830           51 VVDFFSP------GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNV----HVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~Fya~------wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~----l~~~~~I----~~~Pti~l~~~g~  111 (218)
                      ++.|+++      ||++|++++..|+.+     +|.|-.+|++.+.+    |.+.++-    ..+|.+.  .+|+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~   69 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGR   69 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCE
Confidence            4556677      999999999888765     47888889877654    3344444    5677654  4554

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=92.70  E-value=1.3  Score=29.58  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=50.0

Q ss_pred             EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-cHHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHH
Q 027830           53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus        53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l  131 (218)
                      .|+.++|+.|++..=.++...-   .+.+..++..+ ...+.....-..+|++.  .+|.  +      -.+...|.++|
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~--~------l~dS~~I~~yL   67 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGE--V------LTDSAAIIEYL   67 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTE--E------EESHHHHHHHH
T ss_pred             CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCE--E------EeCHHHHHHHH
Confidence            3788999999998866654432   25666666654 35666777778999997  4553  2      23557788999


Q ss_pred             HhhCCC
Q 027830          132 AKHTPD  137 (218)
Q Consensus       132 ~~~~~~  137 (218)
                      +++.+.
T Consensus        68 ~~~~~~   73 (75)
T PF13417_consen   68 EERYPG   73 (75)
T ss_dssp             HHHSTS
T ss_pred             HHHcCC
Confidence            888754

...

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=92.59  E-value=1.2  Score=29.86  Aligned_cols=71  Identities=10%  Similarity=0.069  Sum_probs=41.0

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc----HHHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKK  126 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~----~~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~  126 (218)
                      +..|+.++|+.|++.+-.+.+.     ++.+-.++++..    +++.+.-+-..+|+++.- +| +..      -.....
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~-~~~------l~es~~   68 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NT-GVQ------MFESAD   68 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC-CC-CeE------EEcHHH
Confidence            3457788999999988777655     344444454432    234344455689998532 22 212      233466


Q ss_pred             HHHHHHhh
Q 027830          127 FKDALAKH  134 (218)
Q Consensus       127 l~~~l~~~  134 (218)
                      |.++|.+.
T Consensus        69 I~~yL~~~   76 (77)
T cd03041          69 IVKYLFKT   76 (77)
T ss_pred             HHHHHHHh
Confidence            77777654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=92.58  E-value=0.45  Score=31.28  Aligned_cols=50  Identities=8%  Similarity=0.104  Sum_probs=30.1

Q ss_pred             EEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEE
Q 027830           53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        53 ~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~  105 (218)
                      .|+.++|++|++.+-.+....-.   +..+.++........+..+-..+|++.
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~   52 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE   52 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence            57789999999988777554222   334444443333333344456789874

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=92.14  E-value=0.14  Score=37.55  Aligned_cols=52  Identities=17%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH----HHHHHCCCCcCCEEEEEe
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~----~l~~~~~I~~~Pti~l~~  108 (218)
                      ..|+.++|+.|++....|++-     ++.|-.+|+.+++    ++..-++..+.|..-+++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~   57 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN   57 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence            468999999999998777653     5677777775433    233333333445544443

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=91.25  E-value=0.76  Score=33.26  Aligned_cols=62  Identities=3%  Similarity=0.019  Sum_probs=52.1

Q ss_pred             CCCeEEEEEECCCChhHHhHHHHHHHHHHHC-CC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~-~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~  107 (218)
                      ....++=.|.|..-+..++....+.++.+.+ ++ +.+--||+.++++++..++|-.+||++=.
T Consensus         4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~   67 (103)
T PRK09301          4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI   67 (103)
T ss_pred             CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc
Confidence            3467788888999999999888898887754 44 88888999999999999999999997633

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=91.08  E-value=0.86  Score=32.00  Aligned_cols=60  Identities=5%  Similarity=0.028  Sum_probs=50.0

Q ss_pred             CeEEEEEECCCChhHHhHHHHHHHHHHHC-CC-cEEEEEeCcCcHHHHHHCCCCcCCEEEEE
Q 027830           48 KLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        48 k~vlV~Fya~wC~~C~~~~p~l~~la~~~-~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~  107 (218)
                      ..++=.|.|..-+.+++....+.++.+.+ .+ +.+--||+.++++++..++|-.+||++=.
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~   64 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI   64 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence            45667788888899988888888887754 44 88888999999999999999999997643

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=91.00  E-value=0.28  Score=35.25  Aligned_cols=32  Identities=9%  Similarity=0.289  Sum_probs=24.5

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE   88 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~   88 (218)
                      ..|+.++|+.|+.....|++.     ++.|-.+|+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~   33 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK   33 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence            568999999999998777663     46666666654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=90.11  E-value=0.66  Score=34.10  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK   90 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~   90 (218)
                      ..|+.++|+.|++....|++-     ++.|-.+|+.+++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence            468999999999998877762     5777788876544

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=89.69  E-value=1.1  Score=29.10  Aligned_cols=52  Identities=10%  Similarity=0.100  Sum_probs=34.6

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCc----CcHHHHHHCCCCcCCEEEE
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~----~~~~l~~~~~I~~~Pti~l  106 (218)
                      ..|+.++|+.|++.+-.+.+..-.   +....+|..    ..+++.+......+|++..
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~   57 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL   57 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence            357889999999998887665332   344555542    2345555566678999964

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.67  E-value=2.4  Score=37.73  Aligned_cols=92  Identities=13%  Similarity=0.279  Sum_probs=72.1

Q ss_pred             hhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCCCcCCEEEEEeCCCeeEE
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l~~~g~~~~~  115 (218)
                      +++.+.+..-.+..-+=-|++=.|..|-.....+.-++-..|++.-..||-.-..+-...-+|.++||++  .+|+    
T Consensus       105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvf--lnGe----  178 (520)
T COG3634         105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVF--LNGE----  178 (520)
T ss_pred             HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEE--Ecch----
Confidence            3455555555677788889999999999999999888888899999999987666666778999999975  4664    


Q ss_pred             EEecCccCHHHHHHHHHh
Q 027830          116 SFSCTNATIKKFKDALAK  133 (218)
Q Consensus       116 ~~~~g~~~~~~l~~~l~~  133 (218)
                      .|..|.++.++|...|..
T Consensus       179 ~fg~GRmtleeilaki~~  196 (520)
T COG3634         179 EFGQGRMTLEEILAKIDT  196 (520)
T ss_pred             hhcccceeHHHHHHHhcC
Confidence            344477888888877755

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=89.26  E-value=4.5  Score=29.67  Aligned_cols=23  Identities=13%  Similarity=0.285  Sum_probs=20.3

Q ss_pred             cCcHHHHHHCCCCcCCEEEEEeC
Q 027830           87 EEHKSMCYSLNVHVLPFFRFYRG  109 (218)
Q Consensus        87 ~~~~~l~~~~~I~~~Pti~l~~~  109 (218)
                      .-++.+.++|+|+.+|++++-++
T Consensus        58 ~IdP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   58 QIDPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             eEChhHHhhCCceEcCEEEEEcC
Confidence            33688999999999999999977

The N-terminal portion of these proteins is heterogeneous.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=89.26  E-value=1.1  Score=37.63  Aligned_cols=69  Identities=12%  Similarity=0.024  Sum_probs=44.4

Q ss_pred             CcEEecChhhHHHHHHhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCC-CCcCCEEEE
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFFRF  106 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~-I~~~Pti~l  106 (218)
                      +...+.+.    +..  ..+|+.+++..+.||+.|...+=.|--.-.+|.++.+....-+-       .+ -..+||+.|
T Consensus        45 ~~~kvsn~----d~~--~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F  111 (249)
T PF06053_consen   45 NFFKVSNQ----DLA--PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIF  111 (249)
T ss_pred             ceeeecCc----ccC--CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEE
Confidence            55566553    222  46999999999999999988775555555567766333222221       22 247999988


Q ss_pred             EeC
Q 027830          107 YRG  109 (218)
Q Consensus       107 ~~~  109 (218)
                      ...
T Consensus       112 ~~~  114 (249)
T PF06053_consen  112 NNY  114 (249)
T ss_pred             ecC
Confidence            754

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.03  E-value=1.3  Score=36.65  Aligned_cols=43  Identities=16%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             HHHHHCCCCcCCEEEEEeCCCeeEEEEecCccCHHHHHHHHHhhCCCCC
Q 027830           91 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRC  139 (218)
Q Consensus        91 ~l~~~~~I~~~Pti~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  139 (218)
                      ..++++||+++|||+|  +|+   .... |..+.+-|.+.|++.++...
T Consensus       175 ~~A~e~gI~gVP~fv~--d~~---~~V~-Gaq~~~v~~~al~~~~~~~~  217 (225)
T COG2761         175 AAAQEMGIRGVPTFVF--DGK---YAVS-GAQPYDVLEDALRQLLAEKA  217 (225)
T ss_pred             HHHHHCCCccCceEEE--cCc---Eeec-CCCCHHHHHHHHHHHHhccc
Confidence            4578899999999998  554   2334 88999999999999986543

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=88.85  E-value=0.2  Score=35.34  Aligned_cols=32  Identities=9%  Similarity=-0.019  Sum_probs=26.5

Q ss_pred             CCCCCHHHHHHHHhCCCceeeeCCCCCCCCCC
Q 027830          144 TKGLEEKELLALAANKDLSFNYTPKPHPMPAP  175 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~~v~~y~p~~~~~p~~  175 (218)
                      +..++.++|+..+.+..++.||++||.+|...
T Consensus         3 v~~l~~~~f~~~~~~~~lv~f~a~wC~~C~~~   34 (101)
T cd02994           3 VVELTDSNWTLVLEGEWMIEFYAPWCPACQQL   34 (101)
T ss_pred             eEEcChhhHHHHhCCCEEEEEECCCCHHHHHH
Confidence            45678888999888888999999999998653

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=88.61  E-value=2  Score=36.19  Aligned_cols=91  Identities=18%  Similarity=0.227  Sum_probs=58.7

Q ss_pred             CCCeEEEEEECCCChh-HHhHHHHHH----HHHHHCCC---cEEEEEeCcC--------------------------cHH
Q 027830           46 GDKLVVVDFFSPGCGG-CKALHPKIC----QLAEMNPD---VQFLQVNYEE--------------------------HKS   91 (218)
Q Consensus        46 ~~k~vlV~Fya~wC~~-C~~~~p~l~----~la~~~~~---v~~~~Vd~~~--------------------------~~~   91 (218)
                      .+|.++++|.=+.|+. |=.....+.    ++.+...-   =.|+.||=+.                          -.+
T Consensus       138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~  217 (280)
T KOG2792|consen  138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ  217 (280)
T ss_pred             ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence            5899999999999975 644443333    33333221   2577777521                          346


Q ss_pred             HHHHCCCCcCC-------------EEEEE-eCCCeeEEEEecCccCHHHHHHHHHhhCC
Q 027830           92 MCYSLNVHVLP-------------FFRFY-RGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus        92 l~~~~~I~~~P-------------ti~l~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (218)
                      +|++|.|..-.             ++++| -+-+++.+.+...+++.+++.+-|.++..
T Consensus       218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~  276 (280)
T KOG2792|consen  218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA  276 (280)
T ss_pred             HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence            78888875433             34444 34335677777679999999999988763

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=88.52  E-value=0.53  Score=29.75  Aligned_cols=51  Identities=10%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH--HHHHHCCCCcCCEEE
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK--SMCYSLNVHVLPFFR  105 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~--~l~~~~~I~~~Pti~  105 (218)
                      ..|+.++|+.|++..-.+....-.   +....++.....  .+.+..+-..+|++.
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~   54 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLE   54 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEE
Confidence            357889999999888777665322   344555543322  244556677899875

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=88.21  E-value=0.96  Score=34.12  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=25.6

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcH
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK   90 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~   90 (218)
                      +..|+.+||+.|++....|++-     ++.|-.+|+.+++
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~   36 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence            4578899999999988776544     5667777765443

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=87.68  E-value=0.78  Score=33.23  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=24.4

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH   89 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~   89 (218)
                      ..|+.+||+.|+.....|++-     ++.|-.+|+.++
T Consensus         2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~   34 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD   34 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence            568999999999988777554     466666666543

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=87.24  E-value=0.43  Score=33.69  Aligned_cols=32  Identities=13%  Similarity=0.129  Sum_probs=24.9

Q ss_pred             CCCCCHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830          144 TKGLEEKELLALAANKD--LSFNYTPKPHPMPAP  175 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~  175 (218)
                      +..++.++|+..+.+..  +++||+||+.+|..+
T Consensus         3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~   36 (101)
T cd03003           3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDL   36 (101)
T ss_pred             eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHh
Confidence            34567788888886655  888999999998654

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=86.05  E-value=0.57  Score=33.12  Aligned_cols=31  Identities=26%  Similarity=0.281  Sum_probs=24.4

Q ss_pred             CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCC
Q 027830          144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPA  174 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~  174 (218)
                      +..++.++|+..+.++.   ++.||++||.+|..
T Consensus         3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~   36 (104)
T cd03004           3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQA   36 (104)
T ss_pred             ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHH
Confidence            45677888998876553   88899999999864

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=85.94  E-value=2.5  Score=27.63  Aligned_cols=51  Identities=18%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC----cHHHHHHCCCCcCCEEE
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~----~~~l~~~~~I~~~Pti~  105 (218)
                      ..|+.++|+.|++.+-.+.+..-.   +....+|..+    .+++.+......+|++.
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~   56 (74)
T cd03045           2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV   56 (74)
T ss_pred             EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence            468899999999888777665332   4555666432    35555655667899995

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.91  E-value=2.1  Score=30.86  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             CCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCcHHHHHHCCC-CcCCEE-EEEeCCC
Q 027830           56 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNV-HVLPFF-RFYRGAH  111 (218)
Q Consensus        56 a~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~~~l~~~~~I-~~~Pti-~l~~~g~  111 (218)
                      .|-|+.+.+....|.....    +.|..+|+-.++++.+.+.- ..+||| -+|.+|.
T Consensus        27 ~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE   80 (105)
T COG0278          27 FPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE   80 (105)
T ss_pred             CCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence            5668777777666654422    78999999888988876653 478998 6788875

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=85.80  E-value=8.4  Score=34.86  Aligned_cols=90  Identities=11%  Similarity=0.018  Sum_probs=63.2

Q ss_pred             cCCCeEEEEEECCCChhHHhHH--HHHHHHHHH-CC-CcEEEEEeCc--CcHHHHHHCCCCcCCEEEEEeCCCeeEEEEe
Q 027830           45 AGDKLVVVDFFSPGCGGCKALH--PKICQLAEM-NP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        45 ~~~k~vlV~Fya~wC~~C~~~~--p~l~~la~~-~~-~v~~~~Vd~~--~~~~l~~~~~I~~~Pti~l~~~g~~~~~~~~  118 (218)
                      ..++.+||.|-+---.....|.  -.+...... .. .+..++|+..  ...+++.-|.+..+|++.|+... |......
T Consensus        16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~s-GtpLevi   94 (506)
T KOG2507|consen   16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFS-GTPLEVI   94 (506)
T ss_pred             hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCC-CceeEEe
Confidence            3577888888888888888877  333333322 22 2566666653  34567788999999999988543 4466666


Q ss_pred             cCccCHHHHHHHHHhhC
Q 027830          119 CTNATIKKFKDALAKHT  135 (218)
Q Consensus       119 ~g~~~~~~l~~~l~~~~  135 (218)
                      .|..+.++|..-|++..
T Consensus        95 tg~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   95 TGFVTADELASSIEKVW  111 (506)
T ss_pred             eccccHHHHHHHHHHHH
Confidence            68888999999998876

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.06  E-value=0.9  Score=35.16  Aligned_cols=34  Identities=15%  Similarity=-0.107  Sum_probs=28.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830          142 GPTKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       142 ~~~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      .....++.+++++.+.+.+   +|.||++||++|...
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l   79 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKML   79 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHh
Confidence            3456778899999999888   899999999999654

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=85.05  E-value=0.55  Score=33.36  Aligned_cols=32  Identities=19%  Similarity=0.088  Sum_probs=24.3

Q ss_pred             CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830          144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      +..++.++|...+.+..   ++.||++||.+|-..
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~   36 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNL   36 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhh
Confidence            34567778888776544   889999999998653

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=84.87  E-value=0.4  Score=35.27  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             CCCCCCHHHHHHH---HhCCC--ceeeeCCCCCCCCCC
Q 027830          143 PTKGLEEKELLAL---AANKD--LSFNYTPKPHPMPAP  175 (218)
Q Consensus       143 ~~~~l~~~~l~~~---~~~~~--~v~~y~p~~~~~p~~  175 (218)
                      .+..+++++|+..   ..+..  ++.||+|||.+|..+
T Consensus        10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l   47 (113)
T cd03006          10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAA   47 (113)
T ss_pred             CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHH
Confidence            4667788888876   23333  888999999998654

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PHA02278 thioredoxin-like protein

Probab=84.77  E-value=0.8  Score=33.04  Aligned_cols=29  Identities=7%  Similarity=-0.105  Sum_probs=22.3

Q ss_pred             CHHHHHHHHhCCC--ceeeeCCCCCCCCCCc
Q 027830          148 EEKELLALAANKD--LSFNYTPKPHPMPAPA  176 (218)
Q Consensus       148 ~~~~l~~~~~~~~--~v~~y~p~~~~~p~~~  176 (218)
                      +.++|...+.+..  ++.||++||++|..++
T Consensus         3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~   33 (103)
T PHA02278          3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILK   33 (103)
T ss_pred             CHHHHHHHHhCCCcEEEEEECCCCHHHHhHH
Confidence            4567777776555  8889999999997653

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=84.71  E-value=4.6  Score=30.54  Aligned_cols=47  Identities=11%  Similarity=0.141  Sum_probs=34.7

Q ss_pred             CcHHHHHHCCCCcCCEEEEEeCCC----------eeEEEEecCccCHHHHHHHHHhhC
Q 027830           88 EHKSMCYSLNVHVLPFFRFYRGAH----------GRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        88 ~~~~l~~~~~I~~~Pti~l~~~g~----------~~~~~~~~g~~~~~~l~~~l~~~~  135 (218)
                      -+|.+.++|+|+.+|+|++.+++.          ..... .+|..+.+.-.+.|.+..
T Consensus        59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~-v~Gdvsl~~ALe~ia~~g  115 (130)
T TIGR02742        59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDV-VYGNVSLKGALEKMAQDG  115 (130)
T ss_pred             EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeE-EEecccHHHHHHHHHHhC
Confidence            368999999999999999997762          11222 338888887777777554

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=84.37  E-value=2.4  Score=31.05  Aligned_cols=34  Identities=18%  Similarity=0.412  Sum_probs=25.3

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH   89 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~   89 (218)
                      +..|+.++|+.|++....|++.     ++.+-.+|+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~   35 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ   35 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence            4468899999999988877663     566667776543

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=84.16  E-value=2.6  Score=27.46  Aligned_cols=51  Identities=8%  Similarity=0.068  Sum_probs=32.6

Q ss_pred             EEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC-cHHHHHHCCCCcCCEEE
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR  105 (218)
Q Consensus        52 V~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pti~  105 (218)
                      ..|+.++|+.|++..-.+++..-.   +....+|... .+++.+......+|++.
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~   53 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV   53 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence            457889999999988776554322   3444555443 24455555567899774

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=83.95  E-value=0.51  Score=32.98  Aligned_cols=32  Identities=22%  Similarity=0.109  Sum_probs=24.5

Q ss_pred             CCCCCHHHHHHHHhCCC---ceeeeCCCCCCCCCC
Q 027830          144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      +..++.+++++.+.+..   +++||++||..|-.+
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~   36 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKAL   36 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHH
Confidence            45567778888776653   888999999998653

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK12559 transcriptional regulator Spx; Provisional

Probab=83.66  E-value=2  Score=32.40  Aligned_cols=33  Identities=15%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcC
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE   88 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~   88 (218)
                      +..|+.++|+.|+.....|++-     ++.|-.+|+.+
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~   34 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS   34 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence            5678999999999988666543     45666666544

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=82.91  E-value=27  Score=29.29  Aligned_cols=97  Identities=14%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             HHHHhcCCCeEEEEEECCC------ChhHHhHHHHHHHHHHHCC-CcEEEEEeCcCcHHHHHH----CCCCc--------
Q 027830           40 ESLWHAGDKLVVVDFFSPG------CGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS----LNVHV--------  100 (218)
Q Consensus        40 ~~l~~~~~k~vlV~Fya~w------C~~C~~~~p~l~~la~~~~-~v~~~~Vd~~~~~~l~~~----~~I~~--------  100 (218)
                      +.|.. -+++|-|.+|.+-      -..=+.+...|++.+...+ ++.+-.||-+.++...++    +||..        
T Consensus        18 ~~L~~-L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~   96 (271)
T PF09822_consen   18 KVLKS-LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDN   96 (271)
T ss_pred             HHHHh-CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeeccc
Confidence            44433 4556666666554      4444555666666666666 599999999777766665    88776        


Q ss_pred             --------CCEEEEEeCCCeeEEEEec---CccCHHHHHHHHHhhCCC
Q 027830          101 --------LPFFRFYRGAHGRVCSFSC---TNATIKKFKDALAKHTPD  137 (218)
Q Consensus       101 --------~Pti~l~~~g~~~~~~~~~---g~~~~~~l~~~l~~~~~~  137 (218)
                              ++.+++-.+++.+.+.+..   ...-..+|...|.+....
T Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~  144 (271)
T PF09822_consen   97 GKASIVTVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSD  144 (271)
T ss_pred             ccccceeecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhcc
Confidence                    5565554444333333331   223366777778777754

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=82.85  E-value=16  Score=26.76  Aligned_cols=93  Identities=10%  Similarity=0.087  Sum_probs=66.2

Q ss_pred             HhcCCCeEEEEEECCCChhHHhHHHHHHHHHHHCC---CcEEEEEeCcCcHHHHH----HCCCC-cCCEEEEEeCCCeeE
Q 027830           43 WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCY----SLNVH-VLPFFRFYRGAHGRV  114 (218)
Q Consensus        43 ~~~~~k~vlV~Fya~wC~~C~~~~p~l~~la~~~~---~v~~~~Vd~~~~~~l~~----~~~I~-~~Pti~l~~~g~~~~  114 (218)
                      ...-+...++-|--+--+.-..+.+.++++|+.+.   ++.|+.||-+..+-+..    -|+|. .-|.|=+.+-.....
T Consensus        16 edd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadS   95 (120)
T cd03074          16 EDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADS   95 (120)
T ss_pred             hcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccc
Confidence            33346678888999999999999999999999874   49999999998876553    45665 358887764221112


Q ss_pred             EEEec-C---ccCHHHHHHHHHhhC
Q 027830          115 CSFSC-T---NATIKKFKDALAKHT  135 (218)
Q Consensus       115 ~~~~~-g---~~~~~~l~~~l~~~~  135 (218)
                      +-+.. +   ..+.++|.+||+..+
T Consensus        96 vW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          96 VWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             eeEecccccccCcHHHHHHHHHhhC
Confidence            22221 2   367999999998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=82.84  E-value=0.82  Score=32.66  Aligned_cols=32  Identities=9%  Similarity=-0.047  Sum_probs=24.6

Q ss_pred             CCCCCHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830          144 TKGLEEKELLALAANKD--LSFNYTPKPHPMPAP  175 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~  175 (218)
                      +..++.++|+..+...+  ++.||+|||.+|...
T Consensus         3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~   36 (108)
T cd02996           3 IVSLTSGNIDDILQSAELVLVNFYADWCRFSQML   36 (108)
T ss_pred             eEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhh
Confidence            34567788888776655  788999999998653

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=80.67  E-value=1.2  Score=31.59  Aligned_cols=28  Identities=25%  Similarity=0.180  Sum_probs=22.0

Q ss_pred             CHHHHHHHHhCCC--ceeeeCCCCCCCCCC
Q 027830          148 EEKELLALAANKD--LSFNYTPKPHPMPAP  175 (218)
Q Consensus       148 ~~~~l~~~~~~~~--~v~~y~p~~~~~p~~  175 (218)
                      +.++++.++.+..  ++.||++||.+|..+
T Consensus         6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~   35 (102)
T cd02948           6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAV   35 (102)
T ss_pred             CHHHHHHHHccCCeEEEEEECCcCHhHHHH
Confidence            5667888776655  778999999998654

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=80.51  E-value=6.1  Score=27.22  Aligned_cols=53  Identities=6%  Similarity=0.012  Sum_probs=34.5

Q ss_pred             EEEEECCCChhHHhHHHHHHHHHHHCCCcEEEEEeCcCc-HHHHHHCCCCcCCEEEE
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        51 lV~Fya~wC~~C~~~~p~l~~la~~~~~v~~~~Vd~~~~-~~l~~~~~I~~~Pti~l  106 (218)
                      +..|+.+.|+.|++.+-.+.+..-.   +.+..+|.... ..+.+......+|++..
T Consensus        19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~   72 (89)
T cd03055          19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI   72 (89)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence            4557788899999887666554322   45566665433 34555556678999873

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=80.38  E-value=1.2  Score=31.12  Aligned_cols=30  Identities=13%  Similarity=0.020  Sum_probs=23.5

Q ss_pred             CCCCHHHHHHHHhCCC-ceeeeCCCCCCCCC
Q 027830          145 KGLEEKELLALAANKD-LSFNYTPKPHPMPA  174 (218)
Q Consensus       145 ~~l~~~~l~~~~~~~~-~v~~y~p~~~~~p~  174 (218)
                      ..++.++|...+.++. ++.||++||.+|-.
T Consensus         3 ~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~   33 (102)
T cd03005           3 LELTEDNFDHHIAEGNHFVKFFAPWCGHCKR   33 (102)
T ss_pred             eECCHHHHHHHhhcCCEEEEEECCCCHHHHH
Confidence            3567778888877666 77899999999754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		1e-09
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		3e-09
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		3e-09
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		4e-09
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		6e-09
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		1e-08
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		1e-08
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		1e-08
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		1e-08
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		1e-08
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		2e-08
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		2e-08
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		2e-08
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		3e-08
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		3e-08
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		4e-08
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		4e-08
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		9e-08
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		1e-07
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		1e-07
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		1e-07
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		2e-07
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		2e-07
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		4e-07
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		6e-07
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		8e-07
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		1e-06
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		2e-06
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		2e-06
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		3e-06
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		4e-06
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		4e-06
1gh2_A	107	Crystal Structure Of The Catalytic Domain Of A New		4e-06
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		7e-06
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		8e-06
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		8e-06
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		1e-05
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		1e-05
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		1e-05
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		2e-05
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		6e-05
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		7e-05
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		2e-04
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		2e-04
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		2e-04
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		2e-04
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		2e-04
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		3e-04
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		3e-04
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		3e-04
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		3e-04
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		6e-04
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		6e-04

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 28  LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 87
           +  ++   +D  + L  AG+KLVV+DF++  CG CK + PK+ +L++   DV FL+V+ +
Sbjct: 1   MVYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVD 60
Query: 88  EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 121
           E + +     +  +P F F +    ++ S S  N
Sbjct: 61  ECEDIAQDNQIACMPTFLFMKNGQ-KLDSLSGAN 93

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           +S   +GDKLVVVDFF+  CG CK + P I + AE   D  F +++ +E   +     V 
Sbjct: 19  DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 78
Query: 100 VLPFFRFYRG 109
            +P   FY+G
Sbjct: 79  SMPTLIFYKG 88

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           +S   +GDKLVVVDFF+  CG CK + P I + AE   D  F +++ +E   +     V 
Sbjct: 12  DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 100 VLPFFRFYRG 109
            +P   FY+G
Sbjct: 72  SMPTLIFYKG 81

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
             P F+F++    +V  FS  N
Sbjct: 73  ATPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 32  LGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS 91
           L    DL + +     +L+VVDFF+  CG C+ + PK+  LA+  P+V+F +V+ ++++ 
Sbjct: 4   LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEE 63
Query: 92  MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
                +V  +P F F +     V  FS  N T  K ++ + +H
Sbjct: 64  AAAKYSVTAMPTFVFIKDGK-EVDRFSGANET--KLRETITRH 103

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 103
           AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  +E+K++   L + V+P 
Sbjct: 23  AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 104 FRFYR 108
           F+  +
Sbjct: 83  FKILK 87

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  CMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 103
           AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  +E+K++   L + V+P 
Sbjct: 35  AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 104 FRFYR 108
           F+  +
Sbjct: 95  FKILK 99

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  SMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  SMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  CMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  SMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
             P F+F++    +V  FS  N
Sbjct: 73  ATPTFQFFKKGQ-KVGEFSGAN 93

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           +S   +GDKLVVVDFF+  CG  K + P I + AE   D  F +++ +E   +     V 
Sbjct: 20  DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 79
Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKK 126
            +P   FY+G            A IK+
Sbjct: 80  SMPTLIFYKGGKEVTRVVGANPAAIKQ 106

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           +S   +GDKLVVVDFF+  CG  K + P I + AE   D  F +++ +E   +     V 
Sbjct: 12  DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVS 71
Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKK 126
            +P   FY+G            A IK+
Sbjct: 72  SMPTLIFYKGGKEVTRVVGANPAAIKQ 98

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+  + + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  CMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
             P F+F++    +V  FS  N
Sbjct: 73  CTPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 28  LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY 86
           +  ++    DL   L  A  KLVV+DFF+  CG CK + PK+ +L+    D V  L+V+ 
Sbjct: 6   MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 65
Query: 87  EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131
           +E + +    N+  +P F F +    +V  F+  NA  K+ +D +
Sbjct: 66  DECEDIAMEYNISSMPTFVFLKNGV-KVEEFAGANA--KRLEDVI 107

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 28  LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY 86
           +  ++    DL   L  A  KLVV+DFF+  CG CK + PK+ +L+    D V  L+V+ 
Sbjct: 1   MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 60
Query: 87  EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL 131
           +E + +    N+  +P F F +    +V  F+  NA  K+ +D +
Sbjct: 61  DECEDIAMEYNISSMPTFVFLKNGV-KVEEFAGANA--KRLEDVI 102

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-YEEHKSMCYSLNVHVLPF 103
           AGDK VV+D F+  CG  KA+ PK  +LAE   DV FL+++  +E+K++   L + V+P 
Sbjct: 22  AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 81
Query: 104 FRFYR 108
           F+  +
Sbjct: 82  FKILK 86

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 24  EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 83
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 84  SMPTFQFFKKGQ-KVGEFSGAN 104

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  RMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 48  KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           KL+VVDF +  C  CK + P   +LA+  P+V FL+V+ +E K++    NV  +P F F 
Sbjct: 27  KLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFL 86
Query: 108 R 108
           +
Sbjct: 87  K 87

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 49  LVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
           LVVVDF +  CG C+ + P    LA+  P+V FL+V+ +E KS+     +  +P F F +
Sbjct: 40  LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLK 99
Query: 109 GAHGRVCSFSCTNATIKKFKDALAKH 134
              G++       A   + +  +AKH
Sbjct: 100 --EGKILD-KVVGAKKDELQSTIAKH 122

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  CMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     + 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIR 72
Query: 100 VLPFFRFYRGAHGRVCSF---SCTNATIKKFKDA 130
            +P    ++  +G V +    + +   +K+F DA
Sbjct: 73  GIPTLLLFK--NGEVAATKVGALSKGQLKEFLDA 104

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 44  HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
           +   KLVV+DF +  CG C+ + P    LA+  P+  FL+V+ +E K +    +V  +P 
Sbjct: 31  NTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 90
Query: 104 FRFYR 108
           F F +
Sbjct: 91  FLFMK 95

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +   G  K + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 72
Query: 100 VLPFFRFYRGAHGRVCSFSCTN 121
            +P F+F++    +V  FS  N
Sbjct: 73  CMPTFQFFKKGQ-KVGEFSGAN 93

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 48  KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           KLV++DF +  CG C+ + P   + A+  P   FL+V+ +E K +  + NV  +P F F 
Sbjct: 29  KLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFI 88
Query: 108 R 108
           +
Sbjct: 89  K 89

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 21  SSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ 80
           S  ++    +EL +  DL   L    +KLVVVDFF+  CG CK + P   +L+E   D  
Sbjct: 7   SQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAI 65
Query: 81  FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH--GRVCSFSCTNATIKKFKDALAK 133
           F++V+ ++ +      N+  +P F   +     G V       A+I K +D + K
Sbjct: 66  FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDV-----VGASIAKVEDMIKK 115

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 30  LELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
           +EL +  DL   L    +KLVVVDFF+  CG CK + P   +L+E   D  F++V+ ++ 
Sbjct: 7   IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-KYDAIFVKVDVDKL 65
Query: 90  KSMCYSLNVHVLPFFRFYRGAH--GRV--CSFSCTNATIKKF 127
           +      N+  +P F   +     G V   S +     IKKF
Sbjct: 66  EETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 107

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 24  LVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQF 81
           LV R ++++    D  + +   GDK+VV+DF++  CG CK + P   ++++      V F
Sbjct: 11  LVPRGSVQVISSYDQFKQV-TGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGF 69
Query: 82  LQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135
            +V+ +E   +   + +  +P F F++  +G+    +   A   K + A+ +H+
Sbjct: 70  YKVDVDEQSQIAQEVGIRAMPTFVFFK--NGQKID-TVVGADPSKLQAAITQHS 120

>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human Thioredoxin-Like Protein Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 32  LGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS 91
           +G   D    L  AG +L VV F   GCG C  + P    ++   P   FL+V+  + + 
Sbjct: 6   VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG 65
Query: 92  MCYSLNVHVLPFFRFYR 108
              + N+   P F+F+R
Sbjct: 66  TAATNNISATPTFQFFR 82

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 21  SSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ 80
           S P+VH      G H+ L+  +  A   LV+VDFF+  CG C+ L   +  +AE N DV 
Sbjct: 2   SDPIVHFN----GTHEALLNRIKEA-PGLVLVDFFATWCGPCQRLGQILPSIAEANKDVT 56
Query: 81  FLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV--------CSFSCTNATIKKFK 128
           F++V+ +++ +   +  V  +P   F +     +           S   A I+KFK
Sbjct: 57  FIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFK 112

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           A DKLVVVDF++  CG CK + P I + +E  P   F +++ +E   +     V  +P  
Sbjct: 16  AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 75
Query: 105 RFYRGAHGRVCSFSCTNATIKK 126
             ++             A IK+
Sbjct: 76  LLFKNGKEVAKVVGANPAAIKQ 97

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           A DKLVVVDF++  CG CK + P I + +E  P   F +++ +E   +     V  +P  
Sbjct: 22  AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 105 RFYRGAHGRVCSFSCTNATIKK 126
             ++             A IK+
Sbjct: 82  LLFKNGKEVAKVVGANPAAIKQ 103

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
           +K+VVVDF++  C  C  L P I +LA   P V F ++N EE + +     +  LP   F
Sbjct: 23  NKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMF 82
Query: 107 YRGAH 111
           ++   
Sbjct: 83  FKNGE 87

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 48  KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           K+V++DF +  CG C+ + P   + A+  P   FL+V+ +E K +    NV  +P F F 
Sbjct: 37  KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFI 96
Query: 108 R 108
           +
Sbjct: 97  K 97

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 44  HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
           +   KLVV+DF +  CG  + + P    LA+  P+  FL+V+ +E K +    +V  +P 
Sbjct: 34  NTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPT 93
Query: 104 FRFYR 108
           F F +
Sbjct: 94  FLFMK 98

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 41  SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 100
           +L    DKLV+ DF++  CG CK + P + +L +  PDV+F++ + +E   +     V  
Sbjct: 25  NLIKQNDKLVI-DFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTA 83
Query: 101 LPFFRFYRGAHGRV 114
           +P F    G  G++
Sbjct: 84  MPTFVL--GKDGQL 95

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP- 102
           AG  L +VDFF+P CG C+ + P + +LA  +   ++ ++VN +EH  +     V  +P 
Sbjct: 48  AGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPT 107
Query: 103 FFRFYRGA 110
              F RGA
Sbjct: 108 LVLFRRGA 115

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           A DKLVVVDF++  CG  K + P I + +E  P   F +++ +E   +     V  +P  
Sbjct: 22  AQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81
Query: 105 RFYRGAHGRVCSFSCTNATIKK 126
             ++             A IK+
Sbjct: 82  LLFKNGKEVAKVVGANPAAIKQ 103

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 34  RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC----QLAEMNPDVQFLQVNYEEH 89
           R  +  E+L  A  K ++V+F++P CG CKAL P+      +L     +++  +V+  E 
Sbjct: 13  RKSNFAEAL--AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 90  KSMCYSLNVHVLPFFRFYR 108
             +     V   P  +F+R
Sbjct: 71  SDLAQQYGVRGYPTIKFFR 89

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 50  VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
           V+VDF++P CG CK + P I +LA E +  +   ++N +E   +    N+  +P   F++
Sbjct: 21  VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 109 GAHGR 113
               +
Sbjct: 81  NGERK 85

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 50  VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
           V+VDF++P CG CK + P I +LA E +  +   ++N +E   +    N+  +P   F++
Sbjct: 20  VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 109 GAHGR 113
               +
Sbjct: 80  NGERK 84

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 48  KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           K+V+ +F +  CG CK + P   +L+E  P + FL ++ +E      S  +   P F F 
Sbjct: 47  KIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL 106
Query: 108 RGAH 111
           R   
Sbjct: 107 RDGQ 110

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
           ++LV+VDFF+  CG CK + P   + ++    + F++V+ +E   +    N+  +P F+ 
Sbjct: 26  NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKV 85
Query: 107 YRGAHGRVCSFSCTNATIKKFKDALA 132
           Y+            ++ +K+  +  A
Sbjct: 86  YKNGSSVDTLLGANDSALKQLIEKYA 111

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104
           GDK V+VDF++  CG C+ + P + + AE + D V   ++N +E+        +  +P  
Sbjct: 16  GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 105 RFYRGAH 111
             ++G  
Sbjct: 76  ILFKGGE 82

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 51  VVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
           V+DF++P CG C++  P   +  AE    V+F++VN E   ++     +  +P    YR 
Sbjct: 59  VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIXLYRN 118
Query: 110 A 110
Sbjct: 119 G 119

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104
           GDK V+VDF++  CG C+ + P + + AE + D V   ++N +E+        +  +P  
Sbjct: 16  GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 105 RFYRGAH 111
             ++G  
Sbjct: 76  ILFKGGR 82

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           A  ++ VVDF++  C  C  L P I +LAE  P V F ++N +E+  +     V  LP  
Sbjct: 14  ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTV 73
Query: 105 RFYR 108
            F++
Sbjct: 74  IFFK 77

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 47  DKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
           DK V+VDF++  CG C+ + P +  + AE    ++ +++N +E+        V  +P   
Sbjct: 23  DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN 82
Query: 106 FYRGAH 111
            Y+G  
Sbjct: 83  VYQGGE 88

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 49  LVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
           LV+ +FF+P CG CK + P+  + AE  +  ++   Q++  E++ +C   N+   P  + 
Sbjct: 33  LVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKI 92
Query: 107 YRGA 110
           ++ +
Sbjct: 93  FKNS 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	3e-17
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-17
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	1e-16
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	3e-15
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	9e-15
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	1e-14
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	1e-14
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-14
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-14
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	3e-14
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	7e-14
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	7e-14
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	1e-13
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	1e-13
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	1e-13
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-13
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	2e-13
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-13
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-13
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	2e-13
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	5e-13
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	8e-13
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	2e-12
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	3e-12
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	4e-12
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	3e-11
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-10
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-10
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	5e-07
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-09
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	7e-09
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-08
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-08
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-08
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-08
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-08
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	4e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-06
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-07
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-04
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	4e-07
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-05
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	4e-07
1mek_A	120	Protein disulfide isomerase; electron transport, r	5e-07
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	6e-07
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	6e-07
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	8e-07
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-06
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	3e-06
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	5e-06
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	5e-06
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	7e-06
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	8e-06
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	9e-06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	2e-05
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-05
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	2e-05
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	2e-05
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	3e-05
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-05
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-05
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	3e-05
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	5e-05
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	7e-05
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	1e-04
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	1e-04
2l57_A	126	Uncharacterized protein; structural genomics, unkn	1e-04
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	1e-04
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	1e-04
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	1e-04
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	1e-04
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	1e-04
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	2e-04
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-04
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	2e-04
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	3e-04
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	3e-04
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	3e-04
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	3e-04
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	3e-04
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	3e-04
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	4e-04
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	4e-04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	5e-04
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	5e-04
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	6e-04
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	6e-04
1bed_A	181	DSBA oxidoreductase; TCPG, protein disulfide isome	7e-04
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	7e-04
2kuc_A	130	Putative disulphide-isomerase; structural genomics	7e-04
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	7e-04
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	8e-04
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	9e-04

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 73.1 bits (180), Expect = 3e-17
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
             L  AG +L VV F   GCG C  + P    ++   P   FL+V+  + +    + N+ 
Sbjct: 14  PELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNIS 73

Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
             P F+F+R    R+  +   +A     ++ + +H
Sbjct: 74  ATPTFQFFRNKV-RIDQYQGADA--VGLEEKIKQH 105

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 72.7 bits (179), Expect = 4e-17
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVK 72

Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            +P F+F++    +V  FS   A  +K +  + + 
Sbjct: 73  SMPTFQFFKKGQ-KVGEFSG--ANKEKLEATINEL 104

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E+L  AGDKLVVVDF +  CG  K + P    L+E   +V FL+V+ ++ + +     V 
Sbjct: 24  EALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 83

Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            +P F+F++    +V  FS  N   +K +  + + 
Sbjct: 84  SMPTFQFFKKGQ-KVGEFSGANK--EKLEATINEL 115

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 67.7 bits (166), Expect = 3e-15
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 37  DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 96
           DL + +     +L+VVDFF+  CG C+ + PK+  LA+  P+V+F +V+ ++++      
Sbjct: 9   DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKY 68

Query: 97  NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           +V  +P F F +   G+      + A   K ++ + +H
Sbjct: 69  SVTAMPTFVFIKD--GKEVD-RFSGANETKLRETITRH 103

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 67.0 bits (164), Expect = 9e-15
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
              KL+VVDF +  C  CK + P   +LA+  P+V FL+V+ +E K++    NV  +P F
Sbjct: 24  GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83

Query: 105 RFYRG 109
            F + 
Sbjct: 84  IFLKD 88

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 67.6 bits (165), Expect = 1e-14
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 99
           E L      L+VV F++P    C  ++  + +LA+  P V F+++  E    +     + 
Sbjct: 25  ELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEIS 84

Query: 100 VLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            +P F F++    +        A   +    + +H
Sbjct: 85  SVPTFLFFKN--SQKID-RLDGAHAPELTKKVQRH 116

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
              KLVV+DF +  CG C+ + P    LA+  P+  FL+V+ +E K +    +V  +P F
Sbjct: 32  TAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTF 91

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135
            F +   G V       A  ++    +  H 
Sbjct: 92  LFMKE--GDVKD-RVVGAIKEELTAKVGLHA 119

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
              K+V+ +F +  CG  + + P   +L+E  P + FL ++ +E      S  +   P F
Sbjct: 44  RDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTF 103

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            F R    +V      N    +    +   
Sbjct: 104 FFLRDGQ-QVDKLVGANK--PELHKKITAI 130

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 2/99 (2%)

Query: 37  DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 96
            L +      +  +V+ F +  C  C  +             V  + ++ + H  +    
Sbjct: 30  SLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN-YYYVTLVDIDVDIHPKLNDQH 88

Query: 97  NVHVLPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH 134
           N+  LP F FY    +  V   +   A     + A  K+
Sbjct: 89  NIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKY 127

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 65.8 bits (161), Expect = 3e-14
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
             KLV++DF +  CG C+ + P   + A+  P   FL+V+ +E K +  + NV  +P F 
Sbjct: 27  TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFL 86

Query: 106 FYRG 109
           F + 
Sbjct: 87  FIKD 90

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 64.7 bits (158), Expect = 7e-14
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
               LVVVDF +  CG C+ + P    LA+  P+V FL+V+ +E KS+     +  +P F
Sbjct: 36  ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTF 95

Query: 105 RFYRG 109
            F + 
Sbjct: 96  MFLKE 100

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 64.6 bits (158), Expect = 7e-14
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           + ++LV+VDFF+  CG CK + P   + ++    + F++V+ +E   +    N+  +P F
Sbjct: 24  SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTF 83

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           + Y+   G     +   A     K  + K+
Sbjct: 84  KVYKN--GSSVD-TLLGANDSALKQLIEKY 110

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           A DKLVVVDF++  CG CK + P I + +E  P   F +++ +E   +     V  +P  
Sbjct: 22  AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTL 81

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
             ++   G+  +     A     K A+A +
Sbjct: 82  LLFKN--GKEVA-KVVGANPAAIKQAIAAN 108

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
              K+V++DF +  CG C+ + P   + A+  P   FL+V+ +E K +    NV  +P F
Sbjct: 34  EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTF 93

Query: 105 RFYRG 109
            F + 
Sbjct: 94  LFIKD 98

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
           D  V++  +      C  ++  +  LA   P+ +F++             + + LP    
Sbjct: 23  DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNS---CIQHYHDNCLPTIFV 79

Query: 107 YRGAH--GRVCSFS---CTNATIKKFKDALAKH 134
           Y+      +          N  +++ +  LA+ 
Sbjct: 80  YKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-EEHKSMCYSLNV 98
             +  AGDK VV+D F+  CG  KA+ PK  +LAE   DV FL+++  +E+K++   L +
Sbjct: 17  PIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI 76

Query: 99  HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            V+P F+  +     V     T A   K  +A+   
Sbjct: 77  RVVPTFKILKE--NSVVG-EVTGAKYDKLLEAIQAA 109

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 44  HAGDKLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYEEHKSMCYSLNVHVL 101
            AGDKL+V+ F +     CKAL      ++    N +V FL ++ +E+  +     +  +
Sbjct: 18  AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAV 77

Query: 102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           P+F       G +     + A  K++   L   
Sbjct: 78  PYFIIIHK--GTILK-ELSGADPKEYVSLLEDC 107

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
            +LV++   +  CG C  +  K+  + E    V+ +++  ++ + +     V   P    
Sbjct: 18  QQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLL 77

Query: 107 YR-----GAHGRVCSFSCTNATIKKFKD 129
           +          R  S      TI+ F++
Sbjct: 78  FYNGKEILRESRFISLENLERTIQLFEE 105

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNV 98
             L  A  KLVV+DFF+  CG CK + PK+ +L+    D V  L+V+ +E + +    N+
Sbjct: 13  GQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNI 72

Query: 99  HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
             +P F F +    +V  F+   A  K+ +D +  +
Sbjct: 73  SSMPTFVFLKNGV-KVEEFAG--ANAKRLEDVIKAN 105

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-EEHKSMCYSLNV 98
             +  AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  +E+K++   L +
Sbjct: 30  PIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI 89

Query: 99  HVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            V+P F+  +     V     T A   K  +A+   
Sbjct: 90  RVVPTFKILKE--NSVVG-EVTGAKYDKLLEAIQAA 122

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 17/65 (26%), Positives = 34/65 (52%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
             +  +V+DF++  CG CK + P + +L +  PDV+F++ + +E   +     V  +P F
Sbjct: 28  KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTF 87

Query: 105 RFYRG 109
              + 
Sbjct: 88  VLGKD 92

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 62.0 bits (151), Expect = 8e-13
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           + D L V  F +  CG CK +   + ++A   P V+F +V+ + +  +     V  LP F
Sbjct: 35  SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTF 94

Query: 105 RFYRG 109
              R 
Sbjct: 95  IIARS 99

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
               LV+VDFF+  CG C+ L   +  +AE N DV F++V+ +++ +   +  V  +P  
Sbjct: 21  EAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPAL 80

Query: 105 RFYR-GAHGRVCSFSCTNATIKKFKDALAKH 134
            F +   +          A + + K  + K 
Sbjct: 81  FFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 37  DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 96
           DL   L    +KLVVVDFF+  CG CK + P   +L+E   D  F++V+ ++ +      
Sbjct: 23  DLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKY 81

Query: 97  NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           N+  +P F   +   G         A+I K +D + K 
Sbjct: 82  NISAMPTFIAIKN--GEKVG-DVVGASIAKVEDMIKKF 116

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 60.6 bits (147), Expect = 4e-12
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
           D  VV+  +      C  ++  +  LA   P+ +F++             + + LP    
Sbjct: 30  DLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNS---CIEHYHDNCLPTIFV 86

Query: 107 YRGAH--GRVCSFS---CTNATIKKFKDALAKH 134
           Y+     G+          N  +++ +  L++ 
Sbjct: 87  YKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF 104
             K +VVDF +  CG CK + P    L+      V FL+V+ +   ++  +  +  +P F
Sbjct: 23  EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF 82

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
             Y+   G         A+  K K  +AKH
Sbjct: 83  HVYKD--GVKAD-DLVGASQDKLKALVAKH 109

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
              +VV  +  G  GC AL+  +  LA   P V+F ++            +  VLP    
Sbjct: 133 ITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNT-GAGDRFSSDVLPTLLV 191

Query: 107 YRG 109
           Y+G
Sbjct: 192 YKG 194

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAE--MNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
            GDK+VV+DF++  CG CK + P   ++++      V F +V+ +E   +   + +  +P
Sbjct: 31  GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90

Query: 103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135
            F F++   G+    +   A   K + A+ +H+
Sbjct: 91  TFVFFKN--GQKID-TVVGADPSKLQAAITQHS 120

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVNYEEHKSMCYSLNVHV 100
           A    V+++F++P CG CK   P+  ++A    + +P +   +++      +    +V  
Sbjct: 30  ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG 89

Query: 101 LPFFRFYRG 109
            P  +  + 
Sbjct: 90  YPTIKILKK 98

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHV 100
               +++V+F++P CG CK L P+  + A+     +P +   +V+      +    +V  
Sbjct: 145 NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSG 204

Query: 101 LPFFRFYRG 109
            P  + +R 
Sbjct: 205 YPTLKIFRK 213

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 53.9 bits (129), Expect = 3e-09
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 31  ELGRHKDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
           EL   +  +E++        +VV+ +  G  GC AL+  +  LA   P V+F ++     
Sbjct: 103 ELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNT 162

Query: 90  KSMCYSLNVHVLPFFRFYRG 109
                  +  VLP    Y+G
Sbjct: 163 -GAGDRFSSDVLPTLLVYKG 181

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNV 98
                  D L +V+F++P CG C+ L P+  + A  +   V+   VN ++H+S+     V
Sbjct: 28  NREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGV 87

Query: 99  HVLPFFRFYRGAHGRV 114
              P  + +     + 
Sbjct: 88  QGFPTIKIFGANKNKP 103

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCY 94
           K++ +++    +K++V+ F       C  L   + + +           V+ ++      
Sbjct: 12  KEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQ 71

Query: 95  SLNVHVLP-FFRFYRGAH 111
             ++  +P    F+ G H
Sbjct: 72  YFDISYIPSTVFFFNGQH 89

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 17/98 (17%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
           G    +V F    C  CK +   + +     P V    V+ E    +   L    +P   
Sbjct: 18  GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLV 77

Query: 106 FYR---------GAHGRVCSFSCTNATIKKFKDALAKH 134
           F R         G              ++    ++  H
Sbjct: 78  FIRDGKVAKVFSGIMNP--------RELQALYASIHHH 107

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           G    VVDF++P CG C+   P+   LA  +   V+  +V+ + +   C    +   P  
Sbjct: 20  GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV 79

Query: 105 RFYRG 109
           + Y+ 
Sbjct: 80  KLYQY 84

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVNYEEHKSMCYSLNVHVL 101
            + +  + F++P CG CK L P   +L+         V+  +V+    +++C   +V   
Sbjct: 20  AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGY 79

Query: 102 PFFRFYRG 109
           P    +RG
Sbjct: 80  PTLLLFRG 87

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
            K V+++F++P CG CK L P    L +      D+   +++   +        V   P 
Sbjct: 25  KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT 84

Query: 104 FRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT 135
             F   G       F   N  ++     + +H 
Sbjct: 85  IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHA 117

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAE---------MNPDVQFLQVNY 86
            D       A     +V F++ GCG C+       + A                   VN 
Sbjct: 31  DDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC 90

Query: 87  EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 138
                +C   +++ +P   F+        +  C  ++++      +    D 
Sbjct: 91  ASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDE 142

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 51.7 bits (123), Expect = 6e-08
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
            +  +VDFF+P     +AL P++ + +  +   ++   ++   H+ +C   N+   P   
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTV 514

Query: 106 FYRG 109
            +  
Sbjct: 515 VFNQ 518

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 51.3 bits (122), Expect = 7e-08
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
              +L  V+F+SPG      L P   + A E++  ++   VN  + + +C    V+  P 
Sbjct: 131 NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPS 190

Query: 104 FRFYRG 109
              +R 
Sbjct: 191 LFIFRS 196

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 40  ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAE-MNPDVQFLQVNYEEHKSMCYSLNV 98
                 G    VVDF++P  G  +   P+   LA  +   V+  +V+ + +   C    +
Sbjct: 668 NEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI 727

Query: 99  HVLPFFRFYRGAHGR 113
              P  + Y+    +
Sbjct: 728 KAYPSVKLYQYERAK 742

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 44  HAGDKLVVVDFFSPGCGGCKALHPKICQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
              D++ +VDF+SP     + L P+  ++A  +   +    V+  ++ S C   NV   P
Sbjct: 560 RKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYP 619

Query: 103 FFRFYR 108
             RFY 
Sbjct: 620 EIRFYP 625

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSLNVHVLP 102
               LV+ +FF+P CG CK + P+  + AE     ++   Q++  E++ +C   N+   P
Sbjct: 29  QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP 88

Query: 103 FFRFYRG 109
             + ++ 
Sbjct: 89  SLKIFKN 95

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHVL 101
             K V+V +++P CG CK L P   +LA+       DV   ++++ E+      + +   
Sbjct: 375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGY 432

Query: 102 PFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKE 151
           P    Y  G       +   + ++    D + ++              +++
Sbjct: 433 PTIVLYPGGKKSESVVYQ-GSRSLDSLFDFIKENGHFDVDGKALYEEAQEK 482

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 44  HAGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
                L++V+FF+P CG  K L P+    A  +   V   +V+   + + C    V   P
Sbjct: 18  TGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYP 77

Query: 103 FFRFYRG 109
             + +R 
Sbjct: 78  TLKIFRD 84

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
           +K V+++F++P CG CK L PK  +L E    +P++   +++   +  +     V   P 
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPT 428

Query: 104 FRFYRG 109
             F   
Sbjct: 429 IYFSPA 434

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM------NPDVQFLQVNYEEHKSMCYSLNVHV 100
           +K V V ++ P      A       L+        +      +++ E++  +   + V  
Sbjct: 33  EKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG 92

Query: 101 LPFFRFYRGAHGR 113
            P  R+Y     +
Sbjct: 93  FPTMRYYTRIDKQ 105

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHV 100
           A  K ++V+F++P CG CKAL P+  + A        +++  +V+  E   +     V  
Sbjct: 22  AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG 81

Query: 101 LPFFRFYRG 109
            P  +F+R 
Sbjct: 82  YPTIKFFRN 90

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 20  PSSPLVHRLALELGRHKDLV---ESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN 76
           P S L  RL     +  +     + +   GD ++++                I +L    
Sbjct: 6   PFSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF 65

Query: 77  PDVQFL--QVNYEEHKSMCYSLNVHVLPFFRFYRG 109
           P   +     + E+ +++    NV   P    +  
Sbjct: 66  PQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTD 100

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-----EMNPDVQFLQVNYEEHKSMCYSLNVHVL 101
           + + +V+F++P CG CK L P+    A     +    V+   V+   ++ +     +   
Sbjct: 25  EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF 84

Query: 102 PFFRFYRG 109
           P  + ++ 
Sbjct: 85  PTIKIFQK 92

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 47.4 bits (112), Expect = 8e-07
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVN--YEEHKSMCYSLNVHVLPF 103
           +   +V+F++P CG CK L     + A  ++  VQ   VN    ++K++C   +V+  P 
Sbjct: 35  NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPT 94

Query: 104 FRFYRG 109
              +R 
Sbjct: 95  LMVFRP 100

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           +   +++F++P C  C+ L P+    AE   + +V   +V+  E   +     ++ LP  
Sbjct: 22  EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI 81

Query: 105 RFYRG 109
              + 
Sbjct: 82  YHCKD 86

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88
          K  V+ F++P C  C A  P + Q+A  NP V F+ +    
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRA 65

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVNYEEHKSMCYSLNVHV 100
           A    V+++F++P CG CK   P+  ++A      +P +   +++      +    +V  
Sbjct: 32  ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSG 91

Query: 101 LPFFRFYRG 109
            P  +  + 
Sbjct: 92  YPTIKILKK 100

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM----NPDVQFLQVN--YEEHKSMCYSLNVHV 100
                V+FF+  CG C A  P    LAE      P +    ++   E + ++C   N+  
Sbjct: 30  RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG 89

Query: 101 LPFFRFYRG--AHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGP 143
            P  RF+     +G    F    A ++  ++ L           P
Sbjct: 90  FPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWP 134

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 88
          K  V+ F++P C  C+   P + Q+A  +P+V F+ V   +
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 50  VVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
            +  F SP C  C      + +   E    +   +++    +       +  +P
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVP 57

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH 89
           ++ VVDF++  C  C  L P I +LAE  P V F ++N +E+
Sbjct: 16 HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDEN 58

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPF-F 104
              V+  F+S     C  L P +  LA + N      +++ +  + +     +  +P  +
Sbjct: 26  TTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVY 85

Query: 105 RFYRG 109
            F  G
Sbjct: 86  LFQNG 90

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA----EMNPDVQFLQVN--YEEHKSMCYSLNVHV 100
                V+FF+  CG   A  P   +LA    +  P +    ++   E + ++C   N+  
Sbjct: 30  SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG 89

Query: 101 LPFFRFYRGAH 111
            P  RF++   
Sbjct: 90  FPTVRFFQAFT 100

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEM-------NPDVQFLQVNYEEHKSMCYSLN 97
               + +V+F++  C   + LHP   + +++          V F +V+ ++H  +     
Sbjct: 20  NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYR 79

Query: 98  VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDRCGLGPTKGLEEKELLALAA 157
           +   P  + +R  +G +           +   ALA +   +      +  +  E+  L  
Sbjct: 80  ISKYPTLKLFR--NGMMMKREYRGQ---RSVKALADYIRQQKSDPIQEIRDLAEITTLDR 134

Query: 158 NKDLSFNYTPKPHPMPAPAVEEV 180
           +K     Y  +         E V
Sbjct: 135 SKRNIIGYFEQKDSDNYRVFERV 157

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 9/87 (10%)

Query: 50  VVVDFFSPGCGGCKALHPKICQLAEM---------NPDVQFLQVNYEEHKSMCYSLNVHV 100
           V+  ++       K    +      +         + D+ F+ V+ ++   +   L    
Sbjct: 30  VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDE 89

Query: 101 LPFFRFYRGAHGRVCSFSCTNATIKKF 127
                  +G              + +F
Sbjct: 90  EGSLYVLKGDRTIEFDGEFAADVLVEF 116

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 37  DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQV----NYEEH 89
           +L ++L  A  K V++D ++  C  CK          ++     D   LQ     N  + 
Sbjct: 21  ELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQD 80

Query: 90  KSMCYSLNVHVLPFFRFY 107
            ++   LNV  LP   F+
Sbjct: 81  VALLKHLNVLGLPTILFF 98

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
             +L  V+F+SPGC  C  L P   + A E++  ++   VN  + + +C    V+  P  
Sbjct: 113 SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL 172

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR 138
             +R     V      + + +       +H    
Sbjct: 173 FIFRSGMAAV--KYNGDRSKESLVAFAMQHVRST 204

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM---NPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
            K V V+F++P CG CK L P   +L E    + ++   +++   ++    ++ VH  P 
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPT 324

Query: 104 FRFYRG 109
            +F+  
Sbjct: 325 LKFFPA 330

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          D  +V+DF++P CG C++  P   + A E    V+F++VN E  
Sbjct: 55 DLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
           D  ++VDF++P CG C+ + P+    A  +   V+  +++ + H
Sbjct: 64  DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAH 107

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 48 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          K+ +  F SP C  C A    + ++A EM   V+   +N  E+
Sbjct: 3  KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMEN 45

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
           K VVV F+SP C  CKA+ P   + A E      F ++N   +
Sbjct: 24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATN 67

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          +KLV+VD ++  C  C    P   ++A +      F ++N +E+
Sbjct: 21 NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN 64

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHK 90
              ++ F +  C  C  +  ++  ++ E            EE K
Sbjct: 26 GIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK 70

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM------NPDVQFLQVNYEEHKSMCYSLNVHV 100
            K V+++F++P CG CKAL PK  +L  +         V   +V+   +        +  
Sbjct: 25  TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDV---PDEIQG 81

Query: 101 LPFFRFYR-GAHGRVCSFSCTNATIKKFKDALAKHT 135
            P  + Y  GA G+  ++S  + T++     +A++ 
Sbjct: 82  FPTIKLYPAGAKGQPVTYS-GSRTVEDLIKFIAENG 116

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKS 91
           K  +V F    C  C+ + P + +L         F  V+ EE K+
Sbjct: 22 GKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT 67

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLP 102
           + ++V+ FF+  C  C     ++ +L       +  L+V+ ++++S+    +V  LP
Sbjct: 42  NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLP 98

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          GDK  +VDF++  CG CK + P + +LA E +  +   +V+ E+ 
Sbjct: 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKE 81

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKS 91
          GDK  +VDF++  CG CK + P + +L+ E    +   +VN ++   
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE 96

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Length = 195

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 29 ALELGRHKDLVES--LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY 86
          AL  G    +++         K+ V++FF   C  C    P + +L +  P   +L+  +
Sbjct: 2  ALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH 61

Query: 87 EEHK 90
             +
Sbjct: 62 VVWQ 65

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
            LV+VDF++  CG CK + P + ++  E    V   +VN +++
Sbjct: 20 SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDN 63

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          DK V+VDF++  CG C+ + P +  +A E    ++ +++N +E+
Sbjct: 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDEN 66

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          +  V+VDF++P CG CK + P I +LA E +  +   ++N +E 
Sbjct: 18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Length = 193

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSM 92
             K+ VV+ F   C  C     K+         DV+F  V        
Sbjct: 23 LAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVW 71

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          DK V+VDF++P CG C+ + P I +LA E    V+ ++VN +E+
Sbjct: 19 DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 48 KLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
           L +VDFF+P CG C+ + P + +LA +    ++ ++VN +EH
Sbjct: 51 PLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEH 93

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Length = 193

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSM 92
             K+ V++FF   C  C  L P + + A+   D +     +    K M
Sbjct: 22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEM 70

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 45  AGDKLVVVDFFSPGCGGCK------ALHPKICQLAEM--NPDVQFLQVNYEEHKSMCYSL 96
              +++ + +  P                 +   A++  +  V F  V+ E+  ++   L
Sbjct: 28  KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL 87

Query: 97  NVHVLPFFRFYRG 109
            +        ++ 
Sbjct: 88  GLTEEDSIYVFKE 100

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
            LV+VDF++  C  C+ + P + ++A E    +   +++ +E+
Sbjct: 18 HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDEN 61

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          +  VVVDF +  CG CK L P++ ++  + +  V   +V+ ++H
Sbjct: 31 ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDH 74

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 6/74 (8%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD------VQFLQVNYEEHKSMCYSLNVHV 100
              + +   + GC  C+     + +  E+  +      ++    +   HK       V  
Sbjct: 22  PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDR 81

Query: 101 LPFFRFYRGAHGRV 114
           +P           +
Sbjct: 82  VPTIVIEGDKDYGI 95

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHK 90
              ++  +S  C  C    P++ Q + E++  +          +
Sbjct: 31 QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE 75

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
             V+VDF++P CG C+ + P + ++A E    ++ +++N +E 
Sbjct: 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          D  V+VDF++  CG C+ + P + + A      V   ++N +E+
Sbjct: 17 DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13 PDB: 2ijy_A Length = 181

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD 78
          A    VV +FFS  C  C    P I QL +  P+
Sbjct: 16 ASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE 49

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Length = 175

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 48 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF 81
           + VV+FF   C  C+    ++  L + +P+V+ 
Sbjct: 23 DVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRL 56

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAE----MNPDVQFLQVNYE--EHKSMCYSLNV 98
             DKL+ VD F+  CG CK L   + + +      N     L+++ E  E   +     V
Sbjct: 25  VEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGV 84

Query: 99  HVLP 102
           H  P
Sbjct: 85  HAYP 88

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          D  ++VDF++  CG CK + P + ++A E    +   ++N +++
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEH 89
          ++ V+V F++  CG C+ + P I   A   +  ++ +++  + +
Sbjct: 25 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPN 68

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 47 DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEE 88
          + +V+ DF++P CG  K + P + +L  EM   ++ ++++ +E
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	1e-10
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	4e-09
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	2e-08
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	5e-08
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	5e-08
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	7e-08
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	2e-07
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	3e-07
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	3e-07
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	5e-07
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	5e-07
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	1e-06
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	1e-06
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	1e-06
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	2e-06
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-06
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-05
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	1e-05
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	5e-05
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	6e-05
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	7e-05
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	9e-05
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	1e-04
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	2e-04
d1eeja1	156	c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC	2e-04
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	0.001
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	0.002
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	0.003
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	0.003
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	0.003
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	0.003

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-10
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 37  DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 96
           D    L  AG +L VV F   GCG C  + P    ++   P   FL+V+  + +    + 
Sbjct: 11  DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATN 70

Query: 97  NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           N+   P F+F+R    R+  +   +A     ++ + +H
Sbjct: 71  NISATPTFQFFRNKV-RIDQYQGADA--VGLEEKIKQH 105

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 4e-09
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 37  DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL 96
              E+L  AGDKLVVVDF +  CG CK + P    L+E   +V FL+V+ ++ + +    
Sbjct: 10  AFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEC 69

Query: 97  NVHVLPFFRFYRGAHGRVCSFSCTN-ATIKKFKDAL 131
            V  +P F+F++    +V  FS  N   ++   + L
Sbjct: 70  EVKCMPTFQFFKKGQ-KVGEFSGANKEKLEATINEL 104

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
              +VV+ +  G  GC AL+  +  LA   P V+F ++            +  VLP    
Sbjct: 120 VTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-AGDRFSSDVLPTLLV 178

Query: 107 YRGAH--GRVCSFS---CTNATIKKFKDALAKH 134
           Y+G        S +     +      +  L ++
Sbjct: 179 YKGGELISNFISVAEQFAEDFFAADVESFLNEY 211

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 47.5 bits (112), Expect = 5e-08
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
              KL+VVDF +  C  CK + P   +LA+  P+V FL+V+ +E K++    NV  +P F
Sbjct: 24  GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            F +   G++   +   A        +AKH
Sbjct: 84  IFLKD--GKLVDKT-VGADKDGLPTLVAKH 110

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.6 bits (112), Expect = 5e-08
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCY 94
            DL   L  A  KLVV+DFF+  CG CK + PK+ +L+     +V  L+V+ +E + +  
Sbjct: 14  ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAM 73

Query: 95  SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
             N+  +P F F +    +V  F+  NA  K+ +D +  +
Sbjct: 74  EYNISSMPTFVFLKNG-VKVEEFAGANA--KRLEDVIKAN 110

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 47.1 bits (111), Expect = 7e-08
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPF 103
           AGDK VV+D F+  CG CKA+ PK  +LAE   DV FL+++  + +K++   L + V+P 
Sbjct: 23  AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 82

Query: 104 FRFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           F+  +     V     T A   K  +A+   
Sbjct: 83  FKILKE--NSVVG-EVTGAKYDKLLEAIQAA 110

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 7/85 (8%), Positives = 20/85 (23%)

Query: 23  PLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFL 82
               +     G    L E L     +  ++      C  C+     +     + P+++  
Sbjct: 30  ARFRQKLESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELA 89

Query: 83  QVNYEEHKSMCYSLNVHVLPFFRFY 107
            ++    +                 
Sbjct: 90  IISKGRAEDDLRQRLALERIAIPLV 114

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
           D  ++VDF++  CG CK + P + ++A E    +   ++N +++        +  +P   
Sbjct: 20  DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79

Query: 106 FYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            ++   G V +      +  + K+ L  +
Sbjct: 80  LFKN--GEVAATKVGALSKGQLKEFLDAN 106

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
           + ++LV+VDFF+  CG CK + P   + ++    + F++V+ +E   +    N+  +P F
Sbjct: 16  SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTF 75

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           + Y+   G     +   A     K  + K+
Sbjct: 76  KVYKN--GSSVD-TLLGANDSALKQLIEKY 102

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCY 94
             + +++    D++VV+ F       C  +   +  +AE          V+  E      
Sbjct: 11  WQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNK 70

Query: 95  SLNVH-VLPFFRFYRGAHGRVCSFSCTNATIKKFKD 129
              ++       F+R  H  +   +  N  I    +
Sbjct: 71  MYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAME 106

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.8 bits (105), Expect = 5e-07
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
               LVVVDF +  CG C+ + P    LA+  P+V FL+V+ +E KS+     +  +P F
Sbjct: 26  ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTF 85

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            F +   G++       A   + +  +AKH
Sbjct: 86  MFLKE--GKILD-KVVGAKKDELQSTIAKH 112

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF 103
            GDK V+VDF++  CG C+ + P + + AE + D V   ++N +E+        +  +P 
Sbjct: 15  QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74

Query: 104 FRFYRG 109
              ++G
Sbjct: 75  LILFKG 80

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 20  PSSPLVHRLALELGRH----KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM 75
           P   L  R+ L  G        L + L  A D +V++                I +L   
Sbjct: 6   PFDALWQRM-LARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLRE 64

Query: 76  NPDVQ--FLQVNYEEHKSMCYSLNVHVLPFFRFYR 108
            PD        + E+ +++     V   P    + 
Sbjct: 65  FPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 22  SPLVHRLALELGR---HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD 78
           S L  RL     +      + + +   GD ++++                I +L    P 
Sbjct: 2   SALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQ 61

Query: 79  VQ--FLQVNYEEHKSMCYSLNVHVLPFFRFYRG 109
                   + E+ +++    NV   P    +  
Sbjct: 62  FDWQVAVADLEQSEAIGDRFNVRRFPATLVFTD 94

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 27/71 (38%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS 95
           + L+E +           ++S  C  C  +   +  +A +NP ++   ++    ++    
Sbjct: 4   QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITE 63

Query: 96  LNVHVLPFFRF 106
            NV  +P    
Sbjct: 64  RNVMGVPAVFV 74

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 41.7 bits (97), Expect = 5e-06
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
            K +VVDF +  CG CK + P    L+      V FL+V+ +   ++  +  +  +P F 
Sbjct: 24  HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFH 83

Query: 106 FYRGAHGRVCSFSCTNATIKKFKDALAKHTP 136
            Y+   G         A+  K K  +AKH  
Sbjct: 84  VYKD--GVKAD-DLVGASQDKLKALVAKHAA 111

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
               V+VDF++P CG C+ + P + ++  E    ++ +++N +E  ++     +  +P  
Sbjct: 18  SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTI 77

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
             ++G   +  +              + K+
Sbjct: 78  MVFKG-GKKCETIIGAV-PKATIVQTVEKY 105

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKIC--QLAEMNPDVQFLQVNYEEHKSMC-------YS 95
                 VV F      G K            +   D+    V  +++  +        Y 
Sbjct: 17  ERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 76

Query: 96  LNVHVLPFFRFYRGAHGRVCSFSCTNA-TIKKFKDALAKHTPDRCG 140
           ++    P    ++G              T+   K  ++ +TP   G
Sbjct: 77  VDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLYIG 122

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 5/79 (6%)

Query: 36  KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI-----CQLAEMNPDVQFLQVNYEEHK 90
            +  +++ +    + ++ F +P C  C                     +    V   E+ 
Sbjct: 4   DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP 63

Query: 91  SMCYSLNVHVLPFFRFYRG 109
                 NV  +P       
Sbjct: 64  EWADQYNVMAVPKIVIQVN 82

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 38.6 bits (89), Expect = 6e-05
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQ-FLQVNYEEHKSMCYSLNVHVLPFF 104
            ++ V+V F++  CG C+ + P I   A    D    +++  + + +      V  +P  
Sbjct: 19  AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL 78

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
           R  +G   ++   +    +  K    L  H
Sbjct: 79  RLVKG--EQILDSTEGVISKDKLLSFLDTH 106

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKI----CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 100
           A  K ++V+F++P CG CKAL P+      +L     +++  +V+  E   +     V  
Sbjct: 22  AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG 81

Query: 101 LPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135
            P  +F+R                    + L K T
Sbjct: 82  YPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 38.4 bits (88), Expect = 9e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 104
            +  V+VDF++P CG CK + P I +L  E +  +   ++N +E   +    N+  +P  
Sbjct: 16  SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTV 75

Query: 105 RFYRGAHGRVCSFSCTNATIKKFKDALAKH 134
            F++    R  S            D++ K+
Sbjct: 76  LFFKN-GERKESIIGAV-PKSTLTDSIEKY 103

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFL---QVNYEEHKSMCYSLNVHVLP 102
             K V+++F++P CG CKAL PK  +L  +    +F     +   +  +      +   P
Sbjct: 19  DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFP 78

Query: 103 FFRFYR-GAHGRVCSFSCTNATIKKFKDALAKH 134
             + Y  GA G+  ++S  + T++     +A++
Sbjct: 79  TIKLYPAGAKGQPVTYS-GSRTVEDLIKFIAEN 110

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
           D L V  F +  CG CK +   + ++A   P V+F +V+ + +  +     V  LP F  
Sbjct: 26  DILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFII 85

Query: 107 YRG 109
            R 
Sbjct: 86  ARS 88

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 11/66 (16%), Positives = 21/66 (31%)

Query: 46  GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 105
            +K V+  F    CG C  LH ++     +   V++L    +   S        +     
Sbjct: 25  QEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKD 84

Query: 106 FYRGAH 111
             +   
Sbjct: 85  KNKAFD 90

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 46 GDKLVVVDFFSPGCGGCKALHPKICQL-AEMNPDVQFLQVNYEEHKSMCY 94
          G+K  ++ F+S  C  CK   P++ +   +    +  + V+    +    
Sbjct: 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLD 77

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 17/108 (15%)

Query: 47  DKLVVVDFFSPGCGGCKALHPKICQLAE---MNPDVQFLQVNYEEHKSMCYSLNVHVLPF 103
              ++V      CG CKAL PK  +  E   ++ +   + +  EE               
Sbjct: 25  GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIP 84

Query: 104 FRFYRGAHGRVCSFSCTNAT--------------IKKFKDALAKHTPD 137
              +    G+V                       ++  K+A  + T D
Sbjct: 85  RILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGD 132

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 49  LVVVDFFSPGCGGCKALHPKI-CQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 107
           + +  F SP C  C      +     E    +   +++    +       +  +P     
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 48  KLVVVDFFSPGCGGCKAL-HPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 106
           K+ +  F SP C  C A          EM   V+   +N  E+        +  +P    
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62

Query: 107 YRG 109
              
Sbjct: 63  NGD 65

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLAE--------MNPDVQFLQVNYEEHKSMC--Y 94
              K V+V F +    G K    K  +LAE        +  +V       + +  +   Y
Sbjct: 19  PKSKFVLVKFDTQYPYGEKQDEFK--RLAENSASSDDLLVAEVGISDYGDKLNMELSEKY 76

Query: 95  SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT 135
            L+    P F  +R               +   +  L    
Sbjct: 77  KLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG 117

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 6/70 (8%), Positives = 17/70 (24%), Gaps = 5/70 (7%)

Query: 45  AGDKLVVVDFFSPGCGGCKALHPKICQLA-EMNPDVQFLQVNYE----EHKSMCYSLNVH 99
              +          C  C+     +  +  E    + F+         + ++      + 
Sbjct: 24  DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIP 83

Query: 100 VLPFFRFYRG 109
            +P F     
Sbjct: 84  TVPGFVHITD 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.93
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.92
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.92
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.92
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.92
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.92
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.92
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.92
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.92
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.91
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.91
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.91
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.91
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.9
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.9
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.9
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.89
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.86
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.85
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.84
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.84
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.84
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.83
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.8
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.79
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.79
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.79
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.79
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.78
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.73
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.6
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.56
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.56
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.53
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.52
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.49
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.49
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.44
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.42
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.39
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.37
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.36
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.35
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.3
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.3
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.23
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.59
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.55
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.48
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.46
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.43
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.43
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.41
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.39
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.38
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.25
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.25
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.25
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.18
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.13
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.07
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.01
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.0
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.98
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.93
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.93
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.93
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.9
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.85
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.82
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.81
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.8
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.76
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.75
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.65
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.49
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.48
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.39
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.37
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.36
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.33
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.15
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.12
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.01
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	96.97
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.87
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.69
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.13
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.81
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	94.27
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.89
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	93.87
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	93.71
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	93.0
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	91.5
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	91.34
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	90.91
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	90.67
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	89.52
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	88.07
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	88.05
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	87.28
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	86.19
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	84.86
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	83.98
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	80.4

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-25  Score=148.70  Aligned_cols=106  Identities=25%  Similarity=0.482  Sum_probs=97.5

Q ss_pred             CCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEE
Q ss_conf             57089569636999998139993999997899966774899999999879993999996767488898779982778999
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~l  106 (218)
                      ++|..|.+.++|++.+..+++++++|+|||+||++|+.+.|.|++++++++++.|++||++++++++.+|+|.++||+++
T Consensus         1 ~~v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~   80 (107)
T d1gh2a_           1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQF   80 (107)
T ss_dssp             CCEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred             CCEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECEEEEE
T ss_conf             95489099999999998679997999998898778643133220012322100222344432433466528144328999


Q ss_pred             EECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             96998239887048538999999999549
Q 027830          107 YRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       107 f~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      |++|+ .+..+. | .+.+.|.++|++++
T Consensus        81 ~~~G~-~v~~~~-G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          81 FRNKV-RIDQYQ-G-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EETTE-EEEEEE-S-SCHHHHHHHHHHHH
T ss_pred             EECCE-EEEEEE-C-CCHHHHHHHHHHHH
T ss_conf             99998-999995-9-79999999999963

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.92  E-value=5.5e-25  Score=148.93  Aligned_cols=107  Identities=17%  Similarity=0.323  Sum_probs=94.6

Q ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEE
Q ss_conf             45708956963699999813999399999789996677489999999987999-39999967674888987799827789
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      +.+++++++ ++|++.+.+ ++++++|+|||+||++|+.+.|.|++++..+.+ +.|++||+++++.++++|+|+++||+
T Consensus         1 s~~V~~lt~-~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~   78 (108)
T d1thxa_           1 SKGVITITD-AEFESEVLK-AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL   78 (108)
T ss_dssp             CCSEEECCG-GGHHHHTTT-CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             CCCCEECCH-HHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEECEECCCCCHHHHHHHCCCCCCEE
T ss_conf             998539888-889999983-899399999879988754100677899986178630000024530889998502689879


Q ss_pred             EEEECCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             99969982398870485389999999995499
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       105 ~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  136 (218)
                      ++|++|+ .+..+. |.++.+.|.+||++++.
T Consensus        79 ~~~~~g~-~v~~~~-G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          79 RLVKGEQ-ILDSTE-GVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEEETTE-EEEEEE-SCCCHHHHHHHHHHHHC
T ss_pred             EEEECCE-EEEEEE-CCCCHHHHHHHHHHHCC
T ss_conf             9999999-989996-88999999999998549

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.2e-24  Score=145.71  Aligned_cols=109  Identities=19%  Similarity=0.453  Sum_probs=94.9

Q ss_pred             CCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf             34570895696369999981399939999978999667748999999998799--9399999676748889877998277
Q 027830           25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLP  102 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~~~~l~~~~~I~~~P  102 (218)
                      ..+.++++++ ++|++.+.  +++.+||+||++||++|+++.|.|++++..+.  ++.|++|||+++..+|.+|+|.++|
T Consensus         8 ~~s~v~~lt~-~~f~~~i~--~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   84 (119)
T d2b5ea4           8 EDSAVVKLAT-DSFNEYIQ--SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP   84 (119)
T ss_dssp             TTSSCEECCT-TTHHHHHT--TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCCCCEECCH-HHHHHHHH--CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCC
T ss_conf             9995189278-88999985--69949999977866764322134433222221211046653022448888875345698


Q ss_pred             EEEEEECCC-EEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             899996998-23988704853899999999954999
Q 027830          103 FFRFYRGAH-GRVCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus       103 ti~lf~~g~-~~~~~~~~g~~~~~~l~~~i~~~~~~  137 (218)
                      |+++|++|+ .....|. |.++.+.|++||.+++++
T Consensus        85 ti~~f~~g~~~~~~~y~-g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          85 SLKIFKNSDVNNSIDYE-GPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEEEEETTCTTCEEECC-SCCSHHHHHHHHHHHTSC
T ss_pred             EEEEEECCEEEEEEEEC-CCCCHHHHHHHHHHHHCC
T ss_conf             69999999881007745-989999999999986197

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.92  E-value=1.3e-24  Score=146.90  Aligned_cols=108  Identities=23%  Similarity=0.382  Sum_probs=96.8

Q ss_pred             CCCCEEECCHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf             45708956963699999813--999399999789996677489999999987999-399999676748889877998277
Q 027830           26 HRLALELGRHKDLVESLWHA--GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP  102 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~--~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~P  102 (218)
                      +++++.|++.++|++.+...  ++++++|+|||+||++|+.+.|.|+++++++++ +.|++||+++++.++++|+|.++|
T Consensus         1 gg~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~P   80 (112)
T d1ep7a_           1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CCCEEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99889970899999999987642991999998587578752422235554124626899873023444210015106789


Q ss_pred             EEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             8999969982398870485389999999995499
Q 027830          103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       103 ti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  136 (218)
                      |+++|++|+ .+..+. | .+.++|.+||+++..
T Consensus        81 t~~~~~~G~-~v~~~~-G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          81 TFHVYKDGV-KADDLV-G-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTE-EEEEEE-S-CCHHHHHHHHHHHHC
T ss_pred             EEEEEECCE-EEEEEE-C-CCHHHHHHHHHHHHC
T ss_conf             899999999-999995-9-699999999998737

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-24  Score=145.34  Aligned_cols=104  Identities=31%  Similarity=0.554  Sum_probs=94.3

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf             08956963699999813999399999789996677489999999987999399999676748889877998277899996
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~  108 (218)
                      +.+|.+.++|++.+..+++++++|+|||+||++|+.+.|.+.++++.++++.|++||++++++++.+|+|+++||+++|+
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~   81 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK   81 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHCCCEEEEEEEEEE
T ss_conf             18918999999999857999899999858756403444443220110111004651442587689881955999999999


Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             998239887048538999999999549
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      +|+ .+..+. | .+.+.|.++|++.+
T Consensus        82 ~G~-~v~~~~-G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          82 KGQ-KVGEFS-G-ANKEKLEATINELV  105 (105)
T ss_dssp             TTE-EEEEEE-S-CCHHHHHHHHHHHC
T ss_pred             CCE-EEEEEE-C-CCHHHHHHHHHHHC
T ss_conf             999-988995-8-89999999999559

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=3e-24  Score=144.99  Aligned_cols=107  Identities=30%  Similarity=0.552  Sum_probs=96.0

Q ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEE
Q ss_conf             45708956963699999813999399999789996677489999999987999-39999967674888987799827789
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      ...+.+|.+.++|...+.+.++++++|+|||+||++|+.+.|.|++++.++++ +.++.||++++++++++|+|.++||+
T Consensus         4 ~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~   83 (111)
T d1xwaa_           4 AAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTF   83 (111)
T ss_dssp             SCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCHHHCCCCCCCCEE
T ss_conf             77079977989999999865999899999978656850001457988641155247999985037012221777535089


Q ss_pred             EEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             9996998239887048538999999999549
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       105 ~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++|++|+ .+..+. | .+.+.|.++|++++
T Consensus        84 ~~~~~G~-~v~~~~-G-~~~~~l~~~I~~~l  111 (111)
T d1xwaa_          84 VFLKNGV-KVEEFA-G-ANAKRLEDVIKANI  111 (111)
T ss_dssp             EEEETTE-EEEEEE-S-CCHHHHHHHHHHTC
T ss_pred             EEEECCE-EEEEEE-C-CCHHHHHHHHHHCC
T ss_conf             9998997-999996-8-99899999998429

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=4e-24  Score=144.31  Aligned_cols=108  Identities=27%  Similarity=0.432  Sum_probs=96.6

Q ss_pred             CCCCCEEECCHHHHHHHHHH--CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf             34570895696369999981--3999399999789996677489999999987999399999676748889877998277
Q 027830           25 VHRLALELGRHKDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLP  102 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~--~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~P  102 (218)
                      ...+++.+.+.++|++.+..  .++++++|+|||+||++|+.+.|.|+++++.++++.|+.||+++++.++++|+|+++|
T Consensus         4 ~~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~~P   83 (114)
T d1xfla_           4 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMP   83 (114)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             CCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECEEECCCCCEEEEE
T ss_conf             78858997699999999998652699699999868878864333000110134566520478741010010005541157


Q ss_pred             EEEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             899996998239887048538999999999549
Q 027830          103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       103 ti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      |+++|++|+ .+..+. | .+.++|.++|.+++
T Consensus        84 t~~~~~~G~-~v~~~~-G-~~~~~l~~~i~k~l  113 (114)
T d1xfla_          84 TFMFLKEGK-ILDKVV-G-AKKDELQSTIAKHL  113 (114)
T ss_dssp             EEEEEETTE-EEEEEE-S-CCHHHHHHHHHHHC
T ss_pred             EEEEEECCE-EEEEEE-C-CCHHHHHHHHHHHH
T ss_conf             999998999-999992-9-69999999999961

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.92  E-value=1.8e-24  Score=146.18  Aligned_cols=105  Identities=16%  Similarity=0.351  Sum_probs=93.0

Q ss_pred             CCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEE
Q ss_conf             708956963699999813999399999789996677489999999987999-3999996767488898779982778999
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF  106 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~l  106 (218)
                      .+..|++ ++|++.+.+ ++++|+|+|||+||++|+.+.|.|.+++..+.+ +.++.||++.++.++++|+|+++||+++
T Consensus         2 ~~~~i~~-~~f~~~v~~-s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~   79 (107)
T d1dbya_           2 EAGAVND-DTFKNVVLE-SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCEEECH-HHHHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             CCEEECH-HHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCEEEEEE
T ss_conf             8667558-999999984-89919999989987775446718888877643440699996666566798813462679999


Q ss_pred             EECCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             969982398870485389999999995499
Q 027830          107 YRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       107 f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  136 (218)
                      |++|+ .+..+. |..+.+.|.+||++++.
T Consensus        80 ~~~G~-~v~~~~-G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          80 FKGGK-KCETII-GAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             ESSSS-EEEEEE-SCCCHHHHHHHHHHHCC
T ss_pred             EECCE-EEEEEE-CCCCHHHHHHHHHHHHC
T ss_conf             98780-888986-79999999999998529

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.92  E-value=2e-24  Score=145.95  Aligned_cols=103  Identities=22%  Similarity=0.416  Sum_probs=91.9

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q ss_conf             08956963699999813999399999789996677489999999987999-39999967674888987799827789999
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf  107 (218)
                      +.+|++. +|++.+.+ ++++++|+|||+||++|+.+.|.+.++++.+.+ +.++.||+++++.++++|+|+++||+++|
T Consensus         1 v~el~d~-~f~~~v~~-~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDS-SWKEFVLE-SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTT-THHHHTTT-CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CEECCHH-HHHHHHHC-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCEEEEEEEEEE
T ss_conf             9689534-38999970-899399999868647765358336888776037653058951455545541465254578999


Q ss_pred             ECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             6998239887048538999999999549
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++|+ .+..+. |.++.+.|.+||++++
T Consensus        79 ~~G~-~v~~~~-G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNGE-RKESII-GAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETTE-EEEEEE-ECCCHHHHHHHHHHHC
T ss_pred             ECCE-EEEEEE-CCCCHHHHHHHHHHHC
T ss_conf             7574-899986-7999999999999729

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.9e-24  Score=146.08  Aligned_cols=106  Identities=14%  Similarity=0.324  Sum_probs=93.4

Q ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEE
Q ss_conf             45708956963699999813999399999789996677489999999987999-39999967674888987799827789
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      +.+++++++ ++|++.+.+ ++++|+|+|||+||++|+.+.|.+.+++..+.+ +.++.+|+++++.++.+|+|.++||+
T Consensus         1 s~~v~~lt~-~~f~~~v~~-~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~   78 (108)
T d2trxa_           1 SDKIIHLTD-DSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   78 (108)
T ss_dssp             CTTEEECCT-TTHHHHTTT-CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEE
T ss_pred             CCCCEECCH-HHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCEEEE
T ss_conf             998469888-889999982-899499999789887753348079999998412266651356321547988388717799


Q ss_pred             EEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             9996998239887048538999999999549
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       105 ~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++|++|+ .+..+. |.++.+.|.+||++++
T Consensus        79 ~~~~~G~-~v~~~~-G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          79 LLFKNGE-VAATKV-GALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEETTE-EEEEEE-SCCCHHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEE-CCCCHHHHHHHHHHHC
T ss_conf             9988997-978986-8999999999999964

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.91  E-value=3.7e-24  Score=144.52  Aligned_cols=107  Identities=28%  Similarity=0.419  Sum_probs=95.4

Q ss_pred             CCCCEEECCHHHHHHHHHH--CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCE
Q ss_conf             4570895696369999981--39993999997899966774899999999879993999996767488898779982778
Q 027830           26 HRLALELGRHKDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  103 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~--~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pt  103 (218)
                      ..+++.+++.+++++.+..  .++++++|+|||+||++|+.+.|.|+++++.++++.|+.||+++++.++.+|+|.++||
T Consensus         3 ~g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt   82 (113)
T d1ti3a_           3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CCCEEEEECHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEECCCCE
T ss_conf             88689996799999999998737997999998486466223324554320037984387654202565322672324365


Q ss_pred             EEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             99996998239887048538999999999549
Q 027830          104 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       104 i~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      +++|++|+ .+..+. | .+.+.|.++|.++.
T Consensus        83 ~~~~k~G~-~v~~~~-G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          83 FIFLKDGK-LVDKTV-G-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTE-EEEEEE-C-CCTTHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEC-C-CCHHHHHHHHHHHH
T ss_conf             99999999-999985-9-79999999999871

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.91  E-value=1.3e-23  Score=141.69  Aligned_cols=102  Identities=22%  Similarity=0.406  Sum_probs=91.8

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf             08956963699999813999399999789996677489999999987999399999676748889877998277899996
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~  108 (218)
                      +..|++.++|++.+.+  +++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|+
T Consensus         2 v~~i~s~~~f~~~i~~--~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k   79 (103)
T d1syra_           2 VKIVTSQAEFDSIISQ--NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYK   79 (103)
T ss_dssp             CEEECSHHHHHHHHHH--CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred             CEEECCHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCEEEEEEE
T ss_conf             3995899999999847--99399999678604751113000011220320488861124675300022350560899999


Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             998239887048538999999999549
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      +|+ .+..+. | .+.+.|.+||+++.
T Consensus        80 ~G~-~v~~~~-G-~~~~~l~~~i~k~a  103 (103)
T d1syra_          80 NGS-SVDTLL-G-ANDSALKQLIEKYA  103 (103)
T ss_dssp             TTE-EEEEEE-S-CCHHHHHHHHHTTC
T ss_pred             CCE-EEEEEE-C-CCHHHHHHHHHHHC
T ss_conf             999-999994-9-69899999999659

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.91  E-value=1e-23  Score=142.19  Aligned_cols=106  Identities=19%  Similarity=0.240  Sum_probs=93.3

Q ss_pred             CCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEE
Q ss_conf             34570895696369999981399939999978999667748999999998799939999967674888987799827789
Q 027830           25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      ..++++++++.++|.+.+.  ++++++|+|||+||++|+.+.|.|++++.+++++.|++||+++++.++++|+|.++||+
T Consensus         6 ~~p~vi~i~s~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~   83 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIMS--EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTF   83 (113)
T ss_dssp             CCSCCEEECCHHHHHHHHH--SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCCEEEECCHHHHHHHHC--CCCEEEEEEECCCCCCCHHHCEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEE
T ss_conf             8996699379999999983--79839999988987653000100011111111111100012333456997521578789


Q ss_pred             EEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             9996998239887048538999999999549
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       105 ~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++|++|+ .+..+. | .+.+.+.++|++.+
T Consensus        84 ~~~~~G~-~v~~~~-G-~~~~~l~~~l~~~i  111 (113)
T d1r26a_          84 IIARSGK-MLGHVI-G-ANPGMLRQKLRDII  111 (113)
T ss_dssp             EEEETTE-EEEEEE-S-SCHHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEE-C-CCHHHHHHHHHHHH
T ss_conf             9998998-999996-9-89899999999984

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.91  E-value=8.5e-24  Score=142.59  Aligned_cols=102  Identities=23%  Similarity=0.476  Sum_probs=90.3

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q ss_conf             08956963699999813999399999789996677489999999987999-39999967674888987799827789999
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf  107 (218)
                      .+++++ ++|++.+  +++++++|+|||+||++|+.+.|.+++++.++.+ +.|++||+++++.+|.+|+|.++||+++|
T Consensus         2 ~i~lt~-~~f~~~i--~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           2 TMTLTD-ANFQQAI--QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECT-TTHHHHT--TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEEECH-HHHHHHH--HCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCEEEEEEEE
T ss_conf             799878-9999998--5899299999778988853114000100342389269999979887154888796431079999


Q ss_pred             ECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             6998239887048538999999999549
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++|+ .+..+. |..+.+.|.++|++.+
T Consensus        79 ~~G~-~~~~~~-G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          79 KGGE-PVKQLI-GYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTE-EEEEEE-SCCCHHHHHHHTTTTC
T ss_pred             ECCE-EEEEEE-CCCCHHHHHHHHHHHH
T ss_conf             8998-988997-8899999999999973

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.3e-24  Score=145.64  Aligned_cols=118  Identities=18%  Similarity=0.282  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC
Q ss_conf             98999999853345708956963699999813999399999789996677489999999987999----39999967674
Q 027830           14 PREEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEH   89 (218)
Q Consensus        14 ~~~~~~p~~~~~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~----v~~~~Vd~~~~   89 (218)
                      +||+++|..+  ..++.+|++ ++|.+.+.+ .+++|||+|||+||++|+.+.|.|+++++.+.+    +.++.+|++. 
T Consensus         1 ~~Se~ip~~~--~~~V~~l~~-~nf~~~v~~-~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~-   75 (140)
T d2b5ea1           1 VKSQEIFENQ--DSSVFQLVG-KNHDEIVND-PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-   75 (140)
T ss_dssp             CCCCCCCCCC--SCSEEEECT-TTHHHHHHC-TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-
T ss_pred             CCCCCCCCCC--CCCCEEECC-CCHHHHHHC-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCC-
T ss_conf             9877677567--997489547-698999836-89979999984447543025799999999974245531788632230-


Q ss_pred             HHHHHHCCCCCCCEEEEEECCCE-EEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             88898779982778999969982-39887048538999999999549999
Q 027830           90 KSMCYSLNVHVLPFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus        90 ~~l~~~~~I~~~Pti~lf~~g~~-~~~~~~~g~~~~~~l~~~i~~~~~~~  138 (218)
                       .+|.+|+|.++||+++|++|+. ....|. |.++.+.|++||.++....
T Consensus        76 -~~~~~~~v~~~Ptl~~f~~g~~~~~~~y~-G~~t~~~l~~fi~~~~~~~  123 (140)
T d2b5ea1          76 -NDVRGVVIEGYPTIVLYPGGKKSESVVYQ-GSRSLDSLFDFIKENGHFD  123 (140)
T ss_dssp             -CCCSSCCCSSSSEEEEECCTTSCCCCBCC-SCCCHHHHHHHHHHHCTTC
T ss_pred             -HHCCCCCCCCCCEEEEEECCEECCEEEEC-CCCCHHHHHHHHHHCCCCC
T ss_conf             -11012345668859999899796206847-9899999999999768999

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.90  E-value=5.7e-23  Score=138.23  Aligned_cols=107  Identities=30%  Similarity=0.491  Sum_probs=92.6

Q ss_pred             CCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHCCCCCCCE
Q ss_conf             3457089569636999998139993999997899966774899999999879993999996767-488898779982778
Q 027830           25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPF  103 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~-~~~l~~~~~I~~~Pt  103 (218)
                      +...+.+++.. +|.+.+..+++++++|+||++||++|+.+.|.|++++++++++.|+.+|+++ +++++++|+|+++||
T Consensus         4 ~~g~v~~~~~d-~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V~~~Pt   82 (112)
T d1f9ma_           4 IVGKVTEVNKD-TFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT   82 (112)
T ss_dssp             CTTSEEEECTT-THHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             CCEEEEEECHH-HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHEEECCCCE
T ss_conf             64026994788-89999997699979999976999636899877755213333210000223432465675434056878


Q ss_pred             EEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             99996998239887048538999999999549
Q 027830          104 FRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       104 i~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      +++|++|+ .+..+. | .+.+.+.++|+++.
T Consensus        83 ~~~~k~G~-~v~~~~-G-~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          83 FKILKENS-VVGEVT-G-AKYDKLLEAIQAAR  111 (112)
T ss_dssp             EEEEETTE-EEEEEE-S-SCHHHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEE-C-CCHHHHHHHHHHCC
T ss_conf             99999999-999994-8-89899999999730

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.5e-24  Score=142.88  Aligned_cols=109  Identities=23%  Similarity=0.433  Sum_probs=93.8

Q ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHHHHCCCCCC
Q ss_conf             4570895696369999981399939999978999667748999999998799----939999967674888987799827
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVL  101 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~v~~~~Vd~~~~~~l~~~~~I~~~  101 (218)
                      ..++..++. ++|++.+.+  ++.+||+|||+||++|+.+.|.|+++++.+.    .+.++.||++.+..+|.+|+|.++
T Consensus         6 ~~~V~~l~~-~~f~~~l~~--~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   82 (120)
T d1meka_           6 EDHVLVLRK-SNFAEALAA--HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY   82 (120)
T ss_dssp             ETTEEECCT-TTHHHHHHH--CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSS
T ss_pred             CCCEEECCH-HHHHHHHHC--CCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCC
T ss_conf             897189688-889999966--99299999899868764330243321011113554203410346524157998098468


Q ss_pred             CEEEEEECCCE-EEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             78999969982-39887048538999999999549999
Q 027830          102 PFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       102 Pti~lf~~g~~-~~~~~~~g~~~~~~l~~~i~~~~~~~  138 (218)
                      ||+++|++|+. ....|. |.++.+.|++||++++++.
T Consensus        83 Pt~~~~~~G~~~~~~~~~-g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          83 PTIKFFRNGDTASPKEYT-AGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             SEEEEEESSCSSSCEECC-CCSSHHHHHHHHHTTSCCC
T ss_pred             CEEEEEECCEEEEEEEEC-CCCCHHHHHHHHHHHHCCC
T ss_conf             759999899695007961-7899999999999836789

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-23  Score=140.00  Aligned_cols=105  Identities=11%  Similarity=0.075  Sum_probs=88.9

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q ss_conf             08956963699999813999399999789996677489999999987999-39999967674888987799827789999
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf  107 (218)
                      +.+|.+.+++++.+....+++|+|+|||+||++|+.+.|.+++++.++.+ +.|+.||++++++++++|+|+++||++||
T Consensus         4 l~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f   83 (137)
T d1qgva_           4 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF   83 (137)
T ss_dssp             SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEEEEEEE
T ss_conf             32558889999999707998899999799775520108489999987501005788643335100434574257899999


Q ss_pred             ECCCEEEEEEECCC----------CCHHHHHHHHHHHC
Q ss_conf             69982398870485----------38999999999549
Q 027830          108 RGAHGRVCSFSCTN----------ATIKKFKDALAKHT  135 (218)
Q Consensus       108 ~~g~~~~~~~~~g~----------~~~~~l~~~i~~~~  135 (218)
                      ++|+ .+.... |.          .+.+++++.++...
T Consensus        84 ~~g~-~i~~~~-g~~~~~k~~~~l~~~~~~i~~ie~i~  119 (137)
T d1qgva_          84 FRNK-HIMIDL-GTGNNNKINWAMEDKQEMVDIIETVY  119 (137)
T ss_dssp             ETTE-EEEEEC-C------CCSCCSCHHHHHHHHHHHH
T ss_pred             ECCC-EEEEEE-CCCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf             6895-899983-47885045540322677999999998

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.89  E-value=2.3e-22  Score=135.01  Aligned_cols=106  Identities=10%  Similarity=0.100  Sum_probs=88.2

Q ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHH------HHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHCC
Q ss_conf             4570895696369999981399939999978999667------748999999998799--93999996767488898779
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGC------KALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLN   97 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~C------k~l~p~~~~la~~~~--~v~~~~Vd~~~~~~l~~~~~   97 (218)
                      ...++++++ ++|++.+.+  ++.++|+||||||++|      ..+.+.++.+++.+.  ++.|++|||+++..+|++|+
T Consensus        10 ~~~V~~L~~-~nf~~~l~~--~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~   86 (124)
T d1a8ya1          10 VDRVINVNA-KNYKNVFKK--YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG   86 (124)
T ss_dssp             CCCCEECCT-TTHHHHHHH--CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTT
T ss_pred             CCCCEECCH-HHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHCCC
T ss_conf             985379888-889999973--98499999779862254511889999999999987056875999987404532000034


Q ss_pred             CCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             9827789999699823988704853899999999954999
Q 027830           98 VHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus        98 I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  137 (218)
                      |.+|||+++|++|+  ...|. |.++.+.|++||.+.+.+
T Consensus        87 I~~yPTi~~f~~g~--~~~y~-G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          87 LTEEDSIYVFKEDE--VIEYD-GEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             CCSTTCEEEEESSS--EEECC-SCCSHHHHHHHHHHHHSC
T ss_pred             CCCCCCEEEECCCC--CEEEE-CCCCHHHHHHHHHHHCCC
T ss_conf             54578378861675--27863-799999999999986179

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.7e-22  Score=135.75  Aligned_cols=111  Identities=14%  Similarity=0.074  Sum_probs=96.4

Q ss_pred             CCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf             345708956963699999813999399999789996677489999999987999--399999676748889877998277
Q 027830           25 VHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLP  102 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~~~P  102 (218)
                      +......+ +.++|++.+....+++|++.|||+||++|+.+.|+|.++++++++  +.+++||+++++.++++|+|.++|
T Consensus        15 ~~~g~~~~-~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~P   93 (132)
T d2hfda1          15 LARGWTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFP   93 (132)
T ss_dssp             HTTTCEEE-CHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCC
T ss_pred             HHCCCCCC-CCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHCCCCCE
T ss_conf             97578444-42069999973799579998427879537889999999998756886316998706798999762657520


Q ss_pred             EEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             899996998239887048538999999999549999
Q 027830          103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       103 ti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  138 (218)
                      |+++|++|+ .+..+. |.++.++++++|...+...
T Consensus        94 T~~~~~~G~-~v~~~~-G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          94 ATLVFTGGN-YRGVLN-GIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             EEEEEETTE-EEEEEC-CCSCHHHHHHHHHHHHSCS
T ss_pred             EEEEEECCC-EEEEEC-CCCCHHHHHHHHHHHHCCC
T ss_conf             699998374-766413-9999999999999985851

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=3e-21  Score=129.09  Aligned_cols=106  Identities=17%  Similarity=0.212  Sum_probs=86.9

Q ss_pred             CCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEEEECC-----CCHHHHHHCC
Q ss_conf             57089569636999998139993999997899966774899999999879----99399999676-----7488898779
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYE-----EHKSMCYSLN   97 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~----~~v~~~~Vd~~-----~~~~l~~~~~   97 (218)
                      .+++++++. +|++.+.  +++.+||+||||||++|+  .|.|+++++.+    .++.+++|||+     .+.++|.+|+
T Consensus         2 ~g~v~L~~~-nFd~~v~--~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~   76 (122)
T d2c0ga2           2 TGCVDLDEL-SFEKTVE--RFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   76 (122)
T ss_dssp             TTCEECCTT-THHHHHT--TSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             CCEEECCHH-HHHHHHH--CCCCEEEEEECCCCCCCC--CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             916986767-2899984--198189999899897424--87899999999973897499843665555533899998863


Q ss_pred             C--CCCCEEEEEECCCEEEE--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             9--82778999969982398--87048538999999999549999
Q 027830           98 V--HVLPFFRFYRGAHGRVC--SFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus        98 I--~~~Pti~lf~~g~~~~~--~~~~g~~~~~~l~~~i~~~~~~~  138 (218)
                      |  +++||+++|++|.....  .+. |.++.+.|.+||+++.+..
T Consensus        77 i~~~~~PTi~~f~~g~~~~~~~~~~-g~rt~~~l~~fv~~~~~~~  120 (122)
T d2c0ga2          77 VDDKNFPSIFLFKGNADEYVQLPSH-VDVTLDNLKAFVSANTPLY  120 (122)
T ss_dssp             CCTTSCCEEEEESSSSSSEEECCTT-SCCCHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCCEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCC
T ss_conf             1568999389986996343113567-8889999999999834866

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.7e-21  Score=130.44  Aligned_cols=106  Identities=11%  Similarity=0.069  Sum_probs=92.2

Q ss_pred             CCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHCCCCCCCEE
Q ss_conf             5708956963699999813999399999789996677489999999987999--39999967674888987799827789
Q 027830           27 RLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        27 ~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      .....+ +..++++.+....+++|++.|||+||++|+.+.|.|.++++++++  +.++.||++.++.++++|+|.++||+
T Consensus        11 ~g~~~v-~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~   89 (119)
T d2es7a1          11 RGWQPV-EASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPAT   89 (119)
T ss_dssp             TTCEEC-CCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             CCCCEE-CCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCEEE
T ss_conf             688564-3117999997278867999635998902778988999999866788649999979988788975175740379


Q ss_pred             EEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             9996998239887048538999999999549
Q 027830          105 RFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       105 ~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++|++|+ .+..+. |.++.++++++|+..+
T Consensus        90 ~~~~~G~-~v~~~~-G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          90 LVFTDGK-LRGALS-GIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EEESCC-----CEE-SCCCHHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEE-CCCCHHHHHHHHHHHH
T ss_conf             9997684-877761-8999999999999975

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.84  E-value=3.3e-20  Score=123.55  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----CC-CCEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q ss_conf             3699999813999399999789996677489999999987----99-939999967674888987799827789999699
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM----NP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA  110 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~----~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g  110 (218)
                      ++..+.+.+..++.+++.|||+||++|+.+.|.+++++..    +. .|.+..+|++++++++++|+|.++||+++|++|
T Consensus         4 ~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G   83 (107)
T d1a8la2           4 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG   83 (107)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCCHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf             78999999569982999999586641356482687643343314578399998515422122112454100089999699


Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             8239887048538999999999549
Q 027830          111 HGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       111 ~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      + ....+. |.++.+.|.++|.+.+
T Consensus        84 ~-~~~~~~-G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          84 E-DRVEFE-GAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             E-EEEEEE-SCCCHHHHHHHHHHHH
T ss_pred             E-EEEEEE-CCCCHHHHHHHHHHHH
T ss_conf             3-988997-8999999999999862

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.84  E-value=3e-22  Score=134.37  Aligned_cols=107  Identities=20%  Similarity=0.349  Sum_probs=81.9

Q ss_pred             CCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHCCCCCCCEE
Q ss_conf             708956963699999813999399999789996677489999999987999---39999967674888987799827789
Q 027830           28 LALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFF  104 (218)
Q Consensus        28 ~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---v~~~~Vd~~~~~~l~~~~~I~~~Pti  104 (218)
                      .|..+++ ++|++.+.+ +++++||+|||+||++|+++.|.|+++++.+.+   ..+..+++.+...++.+++|.++||+
T Consensus         3 ~V~~lt~-~nF~~~v~~-~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti   80 (116)
T d2djja1           3 PVTVVVA-KNYNEIVLD-DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI   80 (116)
T ss_dssp             SSEECCT-TTTTTSSSC-TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEE
T ss_pred             CCEECCC-CCHHHHHHC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCCCCCCEE
T ss_conf             9579365-788999844-89979999980646656534069999999975054455058872365313311334689879


Q ss_pred             EEEECCC-EEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             9996998-23988704853899999999954999
Q 027830          105 RFYRGAH-GRVCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus       105 ~lf~~g~-~~~~~~~~g~~~~~~l~~~i~~~~~~  137 (218)
                      ++|++|. .....|. |.++.+.|++||+++..-
T Consensus        81 ~~f~~g~~~~~~~~~-g~~~~~~l~~fi~~~~~~  113 (116)
T d2djja1          81 KLYPAGAKGQPVTYS-GSRTVEDLIKFIAENGKY  113 (116)
T ss_dssp             EEECSSCTTSCCCCC-CCSCHHHHHHHHHHTSSS
T ss_pred             EEEECCCCCCEEEEC-CCCCHHHHHHHHHHCCCC
T ss_conf             999899367567844-899999999999976675

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-20  Score=125.54  Aligned_cols=101  Identities=10%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             EEECCHHHHHHHHHHCCCCEEEEEEECC-------CCHHHHHHHHHHHHHHHHCCC-CEEEEEECC-------CCHHHHH
Q ss_conf             8956963699999813999399999789-------996677489999999987999-399999676-------7488898
Q 027830           30 LELGRHKDLVESLWHAGDKLVVVDFFSP-------GCGGCKALHPKICQLAEMNPD-VQFLQVNYE-------EHKSMCY   94 (218)
Q Consensus        30 ~~i~s~~~~~~~l~~~~~k~vlV~FyA~-------WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~-------~~~~l~~   94 (218)
                      +.|.+.++|.+.+.+..+++++|+|||+       ||++|+.+.|.++++++.+.+ +.|+.||++       .+..++.
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEECCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf             89677999999999749977999998027877899875399999999999975478619999988787210045445788


Q ss_pred             HCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             779982778999969982398870485389999999995
Q 027830           95 SLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus        95 ~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~  133 (218)
                      +|+|.++||+++|++|+ ++....  ..+.+.+..|+.+
T Consensus        84 ~~~V~~iPT~i~~~~g~-~l~~~~--~~~~~ll~~~~~e  119 (119)
T d1woua_          84 NLKVTAVPTLLKYGTPQ-KLVESE--CLQANLVEMLFSE  119 (119)
T ss_dssp             HHCCCSSSEEEETTSSC-EEEGGG--GGCHHHHHHHHHC
T ss_pred             HCCEEEEEEEEEEECCE-EEEEEE--CCCHHHHHHHHCC
T ss_conf             67858888999998996-972004--3899999998639

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.3e-19  Score=120.34  Aligned_cols=108  Identities=23%  Similarity=0.315  Sum_probs=87.4

Q ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCCCCEEEEEECC----CCHHHHHHCCC
Q ss_conf             45708956963699999813999399999789996677489999---999987999399999676----74888987799
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYE----EHKSMCYSLNV   98 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~~v~~~~Vd~~----~~~~l~~~~~I   98 (218)
                      +.++..|.+.++++..+.+..+++++|+|||+||++|+.+.|.+   .++.+.+.++.+..+|++    .+..++++|+|
T Consensus         1 ~~~f~~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (117)
T d2fwha1           1 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV   80 (117)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHEH
T ss_conf             98846846899999999973998399998625677643331668867999985166477750233221678888766356


Q ss_pred             CCCCEEEEEECCCEEEE-EE-ECCCCCHHHHHHHHHHH
Q ss_conf             82778999969982398-87-04853899999999954
Q 027830           99 HVLPFFRFYRGAHGRVC-SF-SCTNATIKKFKDALAKH  134 (218)
Q Consensus        99 ~~~Pti~lf~~g~~~~~-~~-~~g~~~~~~l~~~i~~~  134 (218)
                      .++||+++|+.+ |+.. .+ ..|.++.+.|.++|++.
T Consensus        81 ~~~Pt~~~~~~~-G~~~~~~~~~G~~~~~~~~~~l~~~  117 (117)
T d2fwha1          81 LGLPTILFFDGQ-GQEHPQARVTGFMDAETFSAHLRDR  117 (117)
T ss_dssp             CSSSEEEEECTT-SCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             HHCEEEEEEECC-CCEEECCCCCCCCCHHHHHHHHHCC
T ss_conf             544089999089-9697323133357999999998349

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.5e-19  Score=118.89  Aligned_cols=108  Identities=20%  Similarity=0.337  Sum_probs=89.5

Q ss_pred             CCCCCEEECCHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCE
Q ss_conf             345708956963699999813-9993999997899966774899999999879993999996767488898779982778
Q 027830           25 VHRLALELGRHKDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPF  103 (218)
Q Consensus        25 ~~~~v~~i~s~~~~~~~l~~~-~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pt  103 (218)
                      ....+.+|.+.++|.+.+.+. ++.+|+|+||++||++|+.|.+.|.+++..|++++|++||++..+ +..+|+|.++||
T Consensus        97 ~~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-~~~~~~i~~lPt  175 (217)
T d2trcp_          97 RYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-AGDRFSSDVLPT  175 (217)
T ss_dssp             CCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-CSTTSCGGGCSE
T ss_pred             CCCEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHCCCCCCCE
T ss_conf             5875998288899999998327997599999768988722120448877651245338998145311-587679987886


Q ss_pred             EEEEECCCEEEEEEECC-------CCCHHHHHHHHHHHC
Q ss_conf             99996998239887048-------538999999999549
Q 027830          104 FRFYRGAHGRVCSFSCT-------NATIKKFKDALAKHT  135 (218)
Q Consensus       104 i~lf~~g~~~~~~~~~g-------~~~~~~l~~~i~~~~  135 (218)
                      +++|++|+ .+..+. |       ..+.+.|..+|.++-
T Consensus       176 l~~yk~G~-~v~~~v-g~~~~~g~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         176 LLVYKGGE-LISNFI-SVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEEETTE-EEEEET-TGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEEECCE-EEEEEE-CCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999-989997-86101566388999999999849

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.79  E-value=4.8e-19  Score=117.35  Aligned_cols=100  Identities=11%  Similarity=0.144  Sum_probs=81.8

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCC----HHHHHHCCCCCCCE
Q ss_conf             08956963699999813999399999789996677489999999987999-39999967674----88898779982778
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH----KSMCYSLNVHVLPF  103 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~----~~l~~~~~I~~~Pt  103 (218)
                      -+++.+.+++.+.+.  ++++++|+||++||++|+.+.|.|.+++..+.. +.++.++...+    ..++++|+|.++||
T Consensus        10 ~~~~~t~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          10 DLEVTTVVRAQEALD--KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             TSEECCHHHHHHHHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             EEEECCHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf             236589999999996--699899999299983278799998999998543232210100023200232110012256527


Q ss_pred             EEEEECCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             99996998239887048538999999999
Q 027830          104 FRFYRGAHGRVCSFSCTNATIKKFKDALA  132 (218)
Q Consensus       104 i~lf~~g~~~~~~~~~g~~~~~~l~~~i~  132 (218)
                      +++|++|+ ....+. |..+.++|.+||.
T Consensus        88 li~~~~gk-~~~~~~-G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQ-INVRCD-SSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTE-EEEECC-TTCCHHHHHHHHT
T ss_pred             EEEEECCE-EEEEEC-CCCCHHHHHHHHC
T ss_conf             99998998-999983-8999999999972

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=1.2e-18  Score=115.28  Aligned_cols=93  Identities=13%  Similarity=0.219  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEE
Q ss_conf             63699999813999399999789996677489999999987999399999676748889877998277899996998239
Q 027830           35 HKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV  114 (218)
Q Consensus        35 ~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~  114 (218)
                      .+++.+.+.+..+...++.||++||++|+.+.|.|++++..++++.+..+|++.+++++.+|+|.++||+++  +|+  .
T Consensus         3 ~~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~--~   78 (96)
T d1hyua4           3 AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGK--E   78 (96)
T ss_dssp             CHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTE--E
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCEEEE--CCE--E
T ss_conf             589999998269983999999999842688999999988757761899986310647775425532429999--999--9


Q ss_pred             EEEECCCCCHHHHHHHHHH
Q ss_conf             8870485389999999995
Q 027830          115 CSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       115 ~~~~~g~~~~~~l~~~i~~  133 (218)
                       .+. |.++.++|+++|+.
T Consensus        79 -~~~-G~~~~~~l~~~les   95 (96)
T d1hyua4          79 -FGQ-GRMTLTEIVAKVDT   95 (96)
T ss_dssp             -EEE-SCCCHHHHHHHHCC
T ss_pred             -EEE-CCCCHHHHHHHHHC
T ss_conf             -886-07899999999717

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=4.5e-20  Score=122.80  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             CCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--------CEEEEEECCCCHHHHHHC-
Q ss_conf             45708956963699999813999399999789996677489999999987999--------399999676748889877-
Q 027830           26 HRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--------VQFLQVNYEEHKSMCYSL-   96 (218)
Q Consensus        26 ~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--------v~~~~Vd~~~~~~l~~~~-   96 (218)
                      +.+++++++ ++|++.+.  +++.+||+||++||.+|+.  |.|.+++..+.+        |.++.+||+.++.+|.++ 
T Consensus         3 ~~~~v~L~~-~nFd~~i~--~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~   77 (122)
T d1g7ea_           3 TKGALPLDT-VTFYKVIP--KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK   77 (122)
T ss_dssp             CSSSCSCSH-HHHHHHGG--GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHT
T ss_pred             CCCEEECCH-HHHHHHHH--HCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHC
T ss_conf             774698877-74999996--0980999995577685359--999999999987788763024501126530578888642


Q ss_pred             -CCCCCCEEEEEECCCE-EEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             -9982778999969982-39887048538999999999549
Q 027830           97 -NVHVLPFFRFYRGAHG-RVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        97 -~I~~~Pti~lf~~g~~-~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                       +|++|||+++|++|.. ....|. |.++.+.|++||+++.
T Consensus        78 ~~I~~yPTi~~f~~G~~~~~~~y~-G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          78 LDKESYPVFYLFRDGDFENPVPYS-GAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             CSSSSCEEEEEEESSCCCCCEEEE-SCCCHHHHHHHHHTTS
T ss_pred             CCCCCCCEEEEEECCCCCCCEECC-CCCCHHHHHHHHHHCC
T ss_conf             355679868997457656766517-9899999999999606

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=7.1e-20  Score=121.77  Aligned_cols=83  Identities=22%  Similarity=0.311  Sum_probs=73.9

Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHH
Q ss_conf             99399999789996677489999999987999-39999967674888987799827789999699823988704853899
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK  125 (218)
Q Consensus        47 ~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~  125 (218)
                      +|..+++|||+||++|+.+.|.|+++++.+++ +.+..+|++++++++++|+|.++||++++++|  +   +. |.++.+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g--~---~~-G~~~~~   75 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV--E---FI-GAPTKE   75 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE--E---CC-SSSSSH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC--E---EE-CCCCHH
T ss_conf             95099999879981727664422122211100001111011001133336871485099997791--9---98-789999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999549
Q 027830          126 KFKDALAKHT  135 (218)
Q Consensus       126 ~l~~~i~~~~  135 (218)
                      +|.++|++++
T Consensus        76 ~l~~~i~~~L   85 (85)
T d1fo5a_          76 ALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHCC
T ss_conf             9999998519

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=2.2e-18  Score=113.82  Aligned_cols=81  Identities=11%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHH
Q ss_conf             99999789996677489999999987999-39999967674888987799827789999699823988704853899999
Q 027830           50 VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFK  128 (218)
Q Consensus        50 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~  128 (218)
                      .+..|||+||++|+.+.|.|+++++++++ +.++.+|++++++++.+|+|.++||+++  +|++   .+. |.++.+.|.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~---~~~-G~~~~~~l~   77 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV---RFV-GAPSREELF   77 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE---EEE-CSSCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECEEEE--CCCE---EEE-CCCCHHHHH
T ss_conf             9999999998326879999844032231001011334432643687549158298999--9858---998-289999999


Q ss_pred             HHHHHHCC
Q ss_conf             99995499
Q 027830          129 DALAKHTP  136 (218)
Q Consensus       129 ~~i~~~~~  136 (218)
                      ++|++.+.
T Consensus        78 ~~i~~~l~   85 (85)
T d1nhoa_          78 EAINDEME   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHC
T ss_conf             99998429

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=9.9e-15  Score=94.46  Aligned_cols=88  Identities=23%  Similarity=0.345  Sum_probs=73.4

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-----------------------CHHHHHHCCCCCCC
Q ss_conf             9993999997899966774899999999879993999996767-----------------------48889877998277
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVLP  102 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~-----------------------~~~l~~~~~I~~~P  102 (218)
                      .+++++|+|||+||++|+..+|.+.++.++++++.++.|+..+                       +..+.+.|++.++|
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P  103 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCC
T ss_conf             89979998503415762101114677776402233211111232046777787607752368860454678866988667


Q ss_pred             EEEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             899996998239887048538999999999549
Q 027830          103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       103 ti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++++++.. |++..+. |..+.++|.+.|++..
T Consensus       104 ~~~iiD~~-G~i~~~~-g~~~~~~l~~~i~~Lt  134 (134)
T d1zzoa1         104 AYAFVDPH-GNVDVVR-GRMSQDELTRRVTALT  134 (134)
T ss_dssp             EEEEECTT-CCEEEEE-SCCCHHHHHHHHHHHC
T ss_pred             EEEEECCC-CEEEEEE-CCCCHHHHHHHHHHHC
T ss_conf             69999899-8499998-9999999999999649

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.1e-14  Score=94.31  Aligned_cols=87  Identities=16%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-----------------------CHHHHHHCCCCCCC
Q ss_conf             9993999997899966774899999999879993999996767-----------------------48889877998277
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHVLP  102 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~-----------------------~~~l~~~~~I~~~P  102 (218)
                      .+++++|+|||+||++|+..+|.++++.+..  +.++.++.+.                       +..+...|+|.++|
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P   96 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQG--IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP   96 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTT--CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBS
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHH--HHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCCCCC
T ss_conf             9998999998186877576531002232231--10012233553045688999809863202113230677751557753


Q ss_pred             EEEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             899996998239887048538999999999549
Q 027830          103 FFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       103 ti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      +++++... |++.....|..+.+.+.+.|++.+
T Consensus        97 ~~~liD~~-G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          97 ETFLIDGN-GIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             EEEEECTT-SCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             EEEEECCC-CEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             58999689-989999976899899999999999

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=2.9e-14  Score=91.96  Aligned_cols=88  Identities=25%  Similarity=0.400  Sum_probs=71.2

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC----------------------CHHHHHHCCCCCCCE
Q ss_conf             9993999997899966774899999999879993999996767----------------------488898779982778
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----------------------HKSMCYSLNVHVLPF  103 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~----------------------~~~l~~~~~I~~~Pt  103 (218)
                      .+|+++|+||++||++|+...|.+.++...++++.++.|+.+.                      ...+++.|++.++|+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~  102 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEEECCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCE
T ss_conf             99879998710235775120033788754201222000133342255665554202345144574589999839982778


Q ss_pred             EEEEECC-CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             9999699-82398870485389999999995
Q 027830          104 FRFYRGA-HGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus       104 i~lf~~g-~~~~~~~~~g~~~~~~l~~~i~~  133 (218)
                      +++++.+ +.+......|..+.+++.+.|..
T Consensus       103 ~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         103 FVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             EEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             EEEEECCCEEEEEECCCCCCCHHHHHHHHHC
T ss_conf             9999089859998266787899999999971

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.53  E-value=3.4e-14  Score=91.60  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECC----------------------------CCHHH
Q ss_conf             81399939999978999667748999999998799--9399999676----------------------------74888
Q 027830           43 WHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE----------------------------EHKSM   92 (218)
Q Consensus        43 ~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~----------------------------~~~~l   92 (218)
                      ....+++++|+|||+||++|+...|.+.++.+++.  ++.++.|..+                            .+..+
T Consensus        19 ~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   98 (143)
T d2fy6a1          19 YLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTI   98 (143)
T ss_dssp             GCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHH
T ss_pred             HHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf             99299989999987888652235830544445432588689998642034432014555556640784210012544578


Q ss_pred             HHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             9877998277899996998239887048538999999999549
Q 027830           93 CYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        93 ~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      ++.|++.++|+++++... |++.....|..+.+.+.++|++..
T Consensus        99 ~~~~~v~~~P~~~liD~~-G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          99 AQSLNISVYPSWALIGKD-GDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             HHHTTCCSSSEEEEECTT-SCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             HHHCCCCCCCEEEEECCC-CEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             998599844889999899-989999979999999999998876

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.52  E-value=1.7e-14  Score=93.20  Aligned_cols=89  Identities=16%  Similarity=0.226  Sum_probs=68.0

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC-----------------------CCHHHHHHCCCCCC
Q ss_conf             3999399999789996677489999999987999399999676-----------------------74888987799827
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------------------EHKSMCYSLNVHVL  101 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~-----------------------~~~~l~~~~~I~~~  101 (218)
                      .++++++|+||++||++|+..+|.+.++.+.+. +.+..|+.+                       .+..+...|++.++
T Consensus        29 ~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          29 FKGKVSLVNVWASWCVPCHDEAPLLTELGKDKR-FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCC-CEEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf             699889998514645555334850444311147-4057898540037899999871985321123441045542276666


Q ss_pred             CEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             7899996998239887048538999999999549
Q 027830          102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       102 Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      |+++++... |++.....|..+.+++.+.|.+.+
T Consensus       108 P~~~liD~~-G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         108 PETFVVGRE-GTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             CEEEEECTT-SBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             CEEEEECCC-CEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             438999589-949999968899999999999999

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.49  E-value=1.1e-13  Score=88.92  Aligned_cols=74  Identities=14%  Similarity=0.313  Sum_probs=58.9

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCC------------------------HHHHHHCC
Q ss_conf             399939999978999667748999999998799---939999967674------------------------88898779
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLN   97 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~---~v~~~~Vd~~~~------------------------~~l~~~~~   97 (218)
                      -.+|+++|+|||+||++|+..+|.+.++.+++.   ++.++.|+.+..                        ..+.+.|+
T Consensus        26 l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC
T ss_conf             49998999999168824766417699999998733495799972652389999999867977435677078899999789


Q ss_pred             CCCCCEEEEEECCCEEEEEEE
Q ss_conf             982778999969982398870
Q 027830           98 VHVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        98 I~~~Pti~lf~~g~~~~~~~~  118 (218)
                      |.++||++++...+|++....
T Consensus       106 v~~iPt~~lid~~~G~vi~~~  126 (144)
T d1i5ga_         106 VKSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEESC
T ss_pred             CCCCCEEEEEECCCCEEEEEH
T ss_conf             887587999969999998521

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=2.7e-13  Score=86.84  Aligned_cols=89  Identities=16%  Similarity=0.418  Sum_probs=70.5

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC---------------------------CHHHHHHC
Q ss_conf             3999399999789996677489999999987999-3999996767---------------------------48889877
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE---------------------------HKSMCYSL   96 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~---------------------------~~~l~~~~   96 (218)
                      .++++++|+||++||++|+...|.+.++.+.+.+ +.++.|+.+.                           ...+++.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             HCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
T ss_conf             39898999998698952554154455665553103432268754265433134555678761367431116751058870


Q ss_pred             CCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             99827789999699823988704853899999999954
Q 027830           97 NVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus        97 ~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~  134 (218)
                      ++.++|+++++... |++.....|..+.+.+.+.|++.
T Consensus       107 ~v~~~P~~~~id~~-G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1         107 ENEYVPAYYVFDKT-GQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             CCCCSSEEEEECTT-CBEEEEEESCSTTHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCC-CEEEEEEECCCCHHHHHHHHHHC
T ss_conf             98848989999899-97999997899999999999719

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.44  E-value=2.8e-13  Score=86.72  Aligned_cols=74  Identities=15%  Similarity=0.346  Sum_probs=59.4

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCC------------------------HHHHHHCC
Q ss_conf             399939999978999667748999999998799---939999967674------------------------88898779
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLN   97 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~---~v~~~~Vd~~~~------------------------~~l~~~~~   97 (218)
                      -.+|+++|+|||+||++|+...|.+.++.+++.   ++.++.|+.+..                        ..+.+.|+
T Consensus        26 ~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~  105 (144)
T d1o73a_          26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             HCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCC
T ss_conf             69988999867212865124407899999987524674899972103279999999863465335643622789999749


Q ss_pred             CCCCCEEEEEECCCEEEEEEE
Q ss_conf             982778999969982398870
Q 027830           98 VHVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        98 I~~~Pti~lf~~g~~~~~~~~  118 (218)
                      |.++|++++++...|++....
T Consensus       106 v~~~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_         106 VESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEESC
T ss_pred             CCCCCEEEEEECCCCEEEEEC
T ss_conf             886898999979999998434

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=83.67  Aligned_cols=99  Identities=10%  Similarity=0.137  Sum_probs=70.6

Q ss_pred             HHHHHHH--HCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC-CCEEEEEECCCC--HHHHHHCCCCCCCEEEEEE
Q ss_conf             6999998--13999399999789996677489999---99998799-939999967674--8889877998277899996
Q 027830           37 DLVESLW--HAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEEH--KSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        37 ~~~~~l~--~~~~k~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~-~v~~~~Vd~~~~--~~l~~~~~I~~~Pti~lf~  108 (218)
                      +|.+.+.  +..+|++||+||++||.+|+.|....   .++.+.+. ++.++.+|.+..  ..++++|++.++|++.++.
T Consensus        30 ~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~id  109 (147)
T d2dlxa1          30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILD  109 (147)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEEC
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHEECCCEEEEEEEE
T ss_conf             99999999997399389999517887269998752378999999752456765111101356565500037614899980


Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             9982398870485389999999995499
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~i~~~~~  136 (218)
                      ...|+..... +..+.+.+.+.|++.+.
T Consensus       110 p~~ge~v~~~-~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         110 PRTGQKLVEW-HQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             TTTCCCCEEE-SSCCHHHHHHHHHHHHH
T ss_pred             CCCCEEECCC-CCCCHHHHHHHHHHHHH
T ss_conf             8998575024-88899999999999996

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=1.2e-12  Score=83.47  Aligned_cols=73  Identities=18%  Similarity=0.245  Sum_probs=59.5

Q ss_pred             HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC-----------------------------CCHHHH
Q ss_conf             13999399999789996677489999999987999-399999676-----------------------------748889
Q 027830           44 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-----------------------------EHKSMC   93 (218)
Q Consensus        44 ~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~-----------------------------~~~~l~   93 (218)
                      +-.+++++|+|||+||++|+...|.+.++.++|.+ +.++.|+..                             ....+.
T Consensus        29 d~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          29 QFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             GCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHC
T ss_conf             95898399998477776401343222001222034313554201123332222147788889870986325654055420


Q ss_pred             HHCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf             8779982778999969982398870
Q 027830           94 YSLNVHVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        94 ~~~~I~~~Pti~lf~~g~~~~~~~~  118 (218)
                      +.|++.++|++++++.. |++ .|.
T Consensus       109 ~~~~v~~~P~~~liD~~-G~i-~y~  131 (187)
T d2cvba1         109 KAYRALRTPEVFLFDER-RLL-RYH  131 (187)
T ss_dssp             HHTTCCEESEEEEECTT-CBE-EEE
T ss_pred             CCCCCCCEEEEEEECCC-CEE-EEE
T ss_conf             02464310257998689-829-987

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.37  E-value=3.2e-12  Score=81.11  Aligned_cols=73  Identities=16%  Similarity=0.316  Sum_probs=58.9

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCC------------------------HHHHHHCCC
Q ss_conf             99939999978999667748999999998799---939999967674------------------------888987799
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH------------------------KSMCYSLNV   98 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~---~v~~~~Vd~~~~------------------------~~l~~~~~I   98 (218)
                      .+|+++|+||++||++|+...|.+.++.+++.   ++.++.|+.+..                        ..+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC
T ss_conf             99999999415446640001100677653001121000123452111788998876403552465304311567987488


Q ss_pred             CCCCEEEEEECCCEEEEEEE
Q ss_conf             82778999969982398870
Q 027830           99 HVLPFFRFYRGAHGRVCSFS  118 (218)
Q Consensus        99 ~~~Pti~lf~~g~~~~~~~~  118 (218)
                      .++|++++++...|++....
T Consensus       105 ~~~Pt~~liD~~~G~Vi~~~  124 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVVTTR  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEECCCCEEEEEE
T ss_conf             86787999968999999974

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-12  Score=83.09  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=52.6

Q ss_pred             HCCCCEEEEEEECCCCHHHHHHHHHHHHHH---HHCCCCEEEEEECCCCHHHHHHC-CCCCCCEEEEEECC
Q ss_conf             139993999997899966774899999999---87999399999676748889877-99827789999699
Q 027830           44 HAGDKLVVVDFFSPGCGGCKALHPKICQLA---EMNPDVQFLQVNYEEHKSMCYSL-NVHVLPFFRFYRGA  110 (218)
Q Consensus        44 ~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la---~~~~~v~~~~Vd~~~~~~l~~~~-~I~~~Pti~lf~~g  110 (218)
                      ...+|++||+|||+||++|+.+.|.+.+..   ....++.++.||++....++..+ ...++||++++...
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~   92 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPS   92 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTT
T ss_pred             HHCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf             98199699999726888860560556644999873278289967888687899987412442057878899

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=6.2e-12  Score=79.63  Aligned_cols=88  Identities=20%  Similarity=0.274  Sum_probs=69.9

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------CHHHHHHCCCCCC
Q ss_conf             999399999789996677489999999987999--3999996767----------------------4888987799827
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------HKSMCYSLNVHVL  101 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~----------------------~~~l~~~~~I~~~  101 (218)
                      .+++++|+||++||++|+..++.+.++.+.+.+  +.++.|+.+.                      ...++..|++.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf             99979998740132215522665310111112221000112322002457889987299843220001003555400566


Q ss_pred             CEEEEEECCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             789999699823988704853899999999954
Q 027830          102 PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus       102 Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~  134 (218)
                      |++++++.. |++.....|..+.+.+.+.++..
T Consensus       104 P~~~liD~~-G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         104 PTTFLINPE-GKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             CEEEEECTT-SEEEEEEESCCCHHHHHHHHHHH
T ss_pred             CEEEEECCC-CEEEEEEECCCCHHHHHHHHHHH
T ss_conf             249999999-99999997989999999999861

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.30  E-value=7.3e-12  Score=79.23  Aligned_cols=83  Identities=10%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHC---CCCCCCEEEEEECCCE
Q ss_conf             3699999813999399999789996677489999999987999399999676748889877---9982778999969982
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRFYRGAHG  112 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~---~I~~~Pti~lf~~g~~  112 (218)
                      ++....+..-.++.+++.||++||++|++..|.+.+++..++++.+..|+.+.+.+....|   +...+|+++++.....
T Consensus        43 ~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~  122 (166)
T d1z6na1          43 SALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFN  122 (166)
T ss_dssp             HHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCC
T ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCH
T ss_conf             77999999756982999999296852899999999999878998179997766877888887741553231455375300


Q ss_pred             EEEEEE
Q ss_conf             398870
Q 027830          113 RVCSFS  118 (218)
Q Consensus       113 ~~~~~~  118 (218)
                      ....+.
T Consensus       123 ~~~~~~  128 (166)
T d1z6na1         123 LLGRFV  128 (166)
T ss_dssp             EEEEEE
T ss_pred             HCCCCC
T ss_conf             101112

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.7e-12  Score=81.56  Aligned_cols=86  Identities=13%  Similarity=0.195  Sum_probs=71.5

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCH
Q ss_conf             39993999997899966774899999999879993999996767488898779982778999969982398870485389
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATI  124 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~  124 (218)
                      ++.-++++.||++||++|+.+.+.++++...+. +.++.+|.+.++.+.++|+++ +|++.+  +|+  .. .. +..+.
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~--~~-~~-g~~d~   84 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFD-IPVFHL--NGQ--FL-MM-HRVNT   84 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSS--EE-EE-SSCCH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-EEEEECCCCCCHHHHHHHCCC-CCCEEE--CCC--EE-EE-CCCCH
T ss_conf             799978999879999975999999998643235-699863564579999985665-773364--696--47-96-78999


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99999999549999
Q 027830          125 KKFKDALAKHTPDR  138 (218)
Q Consensus       125 ~~l~~~i~~~~~~~  138 (218)
                      +.|.++|++..+..
T Consensus        85 ~~L~~~L~~l~~~~   98 (100)
T d1wjka_          85 SKLEKQLRKLSGPS   98 (100)
T ss_dssp             HHHHHHHHSSSCSS
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999976677

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.23  E-value=4.3e-11  Score=75.15  Aligned_cols=91  Identities=11%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC--C--------------------------HHHHH
Q ss_conf             3999399999789996677489999999987999--3999996767--4--------------------------88898
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE--H--------------------------KSMCY   94 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~--~--------------------------~~l~~   94 (218)
                      -.+++++|+||++||++|+...+.+.++.+.+.+  +.++.|..+.  .                          ..+..
T Consensus        54 ~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (176)
T d1jfua_          54 FRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  133 (176)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             HCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
T ss_conf             49997999831576664589987653012221223333211210012034555567650875305640420178998764


Q ss_pred             HCCCCCCCEEEEEECCCEEEEEEECC--CCCHHHHHHHHHHHCC
Q ss_conf             77998277899996998239887048--5389999999995499
Q 027830           95 SLNVHVLPFFRFYRGAHGRVCSFSCT--NATIKKFKDALAKHTP  136 (218)
Q Consensus        95 ~~~I~~~Pti~lf~~g~~~~~~~~~g--~~~~~~l~~~i~~~~~  136 (218)
                      .+++.++|++++++.. |++.....|  ..+.++++++|+..++
T Consensus       134 ~~~v~~~P~~~lID~~-G~I~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         134 IGRALGMPTSVLVDPQ-GCEIATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             TTCCSSSSEEEEECTT-SBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             HCCCCCCCEEEEECCC-CEEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             4157777769999499-989999978888885999999998469

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.59  E-value=2.1e-07  Score=55.51  Aligned_cols=91  Identities=11%  Similarity=0.092  Sum_probs=63.8

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC---------------------CHHHHHHCCCC--
Q ss_conf             9993999997-89996677489999999987999--3999996767---------------------48889877998--
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE---------------------HKSMCYSLNVH--   99 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~---------------------~~~l~~~~~I~--   99 (218)
                      .+++++|.|| +.||++|....+.+.++...+.+  +.++.|..+.                     +..+++.|++.  
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE  108 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHCCCCCC
T ss_conf             89989998123534774132212331133321121222221024532444443024315677765487323988395011


Q ss_pred             --------CCCEEEEEECCCEEEEE-EEC----CCCCHHHHHHHHHHHCCC
Q ss_conf             --------27789999699823988-704----853899999999954999
Q 027830          100 --------VLPFFRFYRGAHGRVCS-FSC----TNATIKKFKDALAKHTPD  137 (218)
Q Consensus       100 --------~~Pti~lf~~g~~~~~~-~~~----g~~~~~~l~~~i~~~~~~  137 (218)
                              ..|+++++..+ |++.. +..    +..+.+++.+.+++.++.
T Consensus       109 ~~~~~~~~~~~~~flId~~-G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         109 DLKGLKMVAKRAVFIVKPD-GTVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             EETTEEEEECCEEEEECTT-SBEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCEEEEEEECCC-CEEEEEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf             1246653203269999689-9899999807988988999999999987154

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=1.4e-07  Score=56.53  Aligned_cols=89  Identities=15%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-------------------------CHHHHHHC
Q ss_conf             39993999997-8999667748999999998799--93999996767-------------------------48889877
Q 027830           45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSL   96 (218)
Q Consensus        45 ~~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~-------------------------~~~l~~~~   96 (218)
                      ..++++++.|| +.||+.|....+.+.+..+++.  ++.++.|+.+.                         +..+++.|
T Consensus        42 ~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~y  121 (169)
T d2bmxa1          42 HPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  121 (169)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHC
T ss_conf             79996999986577885001135531012200123575012012310455654211112335402899734178999982


Q ss_pred             CC-----CCCCEEEEEECCCEEEEEEEC----CCCCHHHHHHHHHHH
Q ss_conf             99-----827789999699823988704----853899999999954
Q 027830           97 NV-----HVLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH  134 (218)
Q Consensus        97 ~I-----~~~Pti~lf~~g~~~~~~~~~----g~~~~~~l~~~i~~~  134 (218)
                      ++     ...|+.+++... |++.....    ..++.+++.+.|+..
T Consensus       122 gv~~~~~~~~r~~fvID~~-G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPN-NEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTT-SBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEECCC-CEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             9973578620069999589-979999982888898999999999985

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.9e-07  Score=54.85  Aligned_cols=82  Identities=20%  Similarity=0.365  Sum_probs=61.8

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC---------------------------------------
Q ss_conf             99939999978999667748999999998799939999967---------------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY---------------------------------------   86 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~---------------------------------------   86 (218)
                      ..+.+++.|+-+.|++|+++.|.+.++.+..  +.+..+..                                       
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNALG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  102 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHTT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             8877999985899878998877778763247--62899961454310366899999998651455567887156433454


Q ss_pred             -----CCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             -----6748889877998277899996998239887048538999999999549
Q 027830           87 -----EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus        87 -----~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                           ..+..+++.++|+|+||++ +.+|+  +.  . |..+.+.|..+|++..
T Consensus       103 ~~~~i~~~~~la~~lgv~GTPt~~-~~nG~--~v--~-G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         103 CDVDIADHYALGVQLGVSGTPAVV-LSNGT--LV--P-GYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CSCCHHHHHHHHHHHTCCSSSEEE-CTTSC--EE--E-SCCCHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHCCCCCCCEEE-EECCE--EE--C-CCCCHHHHHHHHHHHH
T ss_conf             301278999999984986888799-71995--82--5-9899999999999999

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=2.8e-06  Score=49.57  Aligned_cols=91  Identities=9%  Similarity=0.080  Sum_probs=58.3

Q ss_pred             CCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC-----
Q ss_conf             9999998533457089569636999998139993999997-89996677489999999987999-3999996767-----
Q 027830           16 EEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE-----   88 (218)
Q Consensus        16 ~~~~p~~~~~~~~v~~i~s~~~~~~~l~~~~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~-----   88 (218)
                      +...|.=.+.+.+-..+.    +.+...  .++.+++.|| +.||+.|....+.+.+...++.+ +.++.|+.+.     
T Consensus         8 G~~aP~f~L~~~~g~~~~----l~~~~~--k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~   81 (156)
T d2a4va1           8 GDPIPDLSLLNEDNDSIS----LKKITE--NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQK   81 (156)
T ss_dssp             TCBCCSCEEECTTSCEEE----HHHHHH--HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHH
T ss_pred             CCCCCCEEEECCCCCEEE----EHHHCC--CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH
T ss_conf             897877088879989896----089738--74489997212356863001047888889998643512000131146677


Q ss_pred             ----------------CHHHHHHCCCCCCC------EEEEEECCCE
Q ss_conf             ----------------48889877998277------8999969982
Q 027830           89 ----------------HKSMCYSLNVHVLP------FFRFYRGAHG  112 (218)
Q Consensus        89 ----------------~~~l~~~~~I~~~P------ti~lf~~g~~  112 (218)
                                      +..+++.|++...|      ++.+..+|+.
T Consensus        82 ~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i  127 (156)
T d2a4va1          82 KFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKL  127 (156)
T ss_dssp             HHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEE
T ss_pred             HHHCCCCCCCEECCCHHHHHHHHCCCCCCCCCCEEEEEEEEECCEE
T ss_conf             6511347642021436799999759972136872379999978869

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.5e-06  Score=49.85  Aligned_cols=83  Identities=14%  Similarity=0.188  Sum_probs=61.5

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-------------------------------------
Q ss_conf             9993999997899966774899999999879993999996767-------------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-------------------------------------   88 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~-------------------------------------   88 (218)
                      ..+.+++.|+.+.|++|+++.+.++++.+.+ .+.+..++..-                                     
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~  113 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  113 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCC
T ss_conf             9998999988999801489999999987424-526999765667832399988998634799999999985101344552


Q ss_pred             -------------CHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             -------------4888987799827789999699823988704853899999999
Q 027830           89 -------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDAL  131 (218)
Q Consensus        89 -------------~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i  131 (218)
                                   +..+.++++|+++||+++...+ ++..... |-.+.+.|...+
T Consensus       114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~-g~~~~~~-G~~~~~~l~~il  167 (169)
T d1v58a1         114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKE-NTLQQAV-GLPDQKTLNIIM  167 (169)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETT-TEEEEEE-SSCCHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCEEEEC-CCCCHHHHHHHH
T ss_conf             11048899999999999996599989879998899-8778835-999999999985

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.43  E-value=1.5e-06  Score=50.99  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC------------------------------------
Q ss_conf             999399999789996677489999999987999-3999996767------------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE------------------------------------   88 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~------------------------------------   88 (218)
                      +.++.+|.|...-|++|+.+.+.+..+.+++.+ +.+..+...-                                    
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99988999988899465656530266765234555235884136664447999999999999540146899999999875


Q ss_pred             ---------------------------------------CHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHH
Q ss_conf             ---------------------------------------48889877998277899996998239887048538999999
Q 027830           89 ---------------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKD  129 (218)
Q Consensus        89 ---------------------------------------~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~  129 (218)
                                                             +....++++|+++||+++  +|+ .+.... +..+.+.+.+
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk-~~v~~~-~~~~~~~l~~  172 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNR-YLVQGQ-SVKSLDEYFD  172 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTT-EEECGG-GCCSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCE-EEECCC-CCCCHHHHHH
T ss_conf             034105899999998712789999999727678999999999999949861668999--999-960787-7779999999


Q ss_pred             HHHHHC
Q ss_conf             999549
Q 027830          130 ALAKHT  135 (218)
Q Consensus       130 ~i~~~~  135 (218)
                      .|+..+
T Consensus       173 ~i~~L~  178 (181)
T d1beda_         173 LVNYLL  178 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.41  E-value=1.7e-06  Score=50.71  Aligned_cols=89  Identities=9%  Similarity=0.063  Sum_probs=65.6

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC---------------------------CHHHHHH
Q ss_conf             9993999997-8999667748999999998799--93999996767---------------------------4888987
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------------HKSMCYS   95 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~---------------------------~~~l~~~   95 (218)
                      .++.+++.|| +.||+.|....+.+.+...++.  ++.++.|.++.                           +..+++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             99979999988878965878887787640210157841340037767888777666564034344466234832699998


Q ss_pred             CCC-------CCCCEEEEEECCCEEEEEE-E--C-CCCCHHHHHHHHHHHC
Q ss_conf             799-------8277899996998239887-0--4-8538999999999549
Q 027830           96 LNV-------HVLPFFRFYRGAHGRVCSF-S--C-TNATIKKFKDALAKHT  135 (218)
Q Consensus        96 ~~I-------~~~Pti~lf~~g~~~~~~~-~--~-g~~~~~~l~~~i~~~~  135 (218)
                      |++       ...|++.++... |.+... .  . .+++.+++...|+...
T Consensus       108 yGv~~~~~~~~~~RatFIIDpd-G~Ir~~~~~~~~~gR~~dEiLr~l~aLQ  157 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDAR-GVIRTMLYYPMELGRLVDEILRIVKALK  157 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTT-SBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEEEEEECCC-CEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             5996223555310346998899-9899999807987779899999999976

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.39  E-value=4.9e-07  Score=53.62  Aligned_cols=88  Identities=10%  Similarity=0.082  Sum_probs=60.8

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC----------------------------CHHHHH
Q ss_conf             9993999997-89996677489999999987999--3999996767----------------------------488898
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .+++++|.|| +.||+.|....+.+.+...++.+  +.++.|+.+.                            +..+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             99969999712555534104667899989986257448986327847767887756777455455456501134219999


Q ss_pred             HCCCC------CCCEEEEEECCCEEEEEEEC----CCCCHHHHHHHHHHH
Q ss_conf             77998------27789999699823988704----853899999999954
Q 027830           95 SLNVH------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH  134 (218)
Q Consensus        95 ~~~I~------~~Pti~lf~~g~~~~~~~~~----g~~~~~~l~~~i~~~  134 (218)
                      .|++.      .+|+..++... |++.....    .+++.+++.+.|+..
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~-G~Ir~~~~~~~~~~~~~~evL~~l~al  160 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPN-GKLRQIIINDMPIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTT-SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCEEEEEEECCC-CEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             8299725579713699998789-889999973898899999999999987

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.38  E-value=3.3e-07  Score=54.50  Aligned_cols=84  Identities=18%  Similarity=0.276  Sum_probs=62.0

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC--------------------------------------
Q ss_conf             399939999978999667748999999998799939999967--------------------------------------
Q 027830           45 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY--------------------------------------   86 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~--------------------------------------   86 (218)
                      .+.+.+++.|+-+.|++|+++.+.+.++.+....+.+.....                                      
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             99888999997899878998867788773368559999841565334678999999975658876676764203211223


Q ss_pred             ----CCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             ----674888987799827789999699823988704853899999999954
Q 027830           87 ----EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAKH  134 (218)
Q Consensus        87 ----~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~  134 (218)
                          ..+..+++.+||+|+||+++ .+|.  +.  . |....+.|.++|++.
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~~-~nG~--~i--~-G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIVT-STGE--LI--G-GYLKPADLLRALEET  149 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEEC-TTSC--CC--C-SCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEE-CCCC--EE--C-CCCCHHHHHHHHHHH
T ss_conf             158999999998638677877997-5982--86--6-989999999999850

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.25  E-value=3.5e-06  Score=49.09  Aligned_cols=81  Identities=12%  Similarity=0.294  Sum_probs=59.7

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCC----------------------------------
Q ss_conf             999399999789996677489999999987999---3999996767----------------------------------
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEE----------------------------------   88 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---v~~~~Vd~~~----------------------------------   88 (218)
                      ..+..++.|+...|++|+.+.+.+.++..++.+   +.+..+....                                  
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  102 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             99989999988998748999998754544302456224530454466210299999999999735245899999998720


Q ss_pred             --------------------------------CHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             --------------------------------488898779982778999969982398870485389999999995
Q 027830           89 --------------------------------HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALAK  133 (218)
Q Consensus        89 --------------------------------~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~  133 (218)
                                                      ....+++++|+++||+++  +|+  .  +. |..+.+++.++|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~--~--~~-g~~~~~~~~~~id~  172 (172)
T d1z6ma1         103 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY--I--FD-ESVTEEELRGYIEK  172 (172)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE--E--EC-TTCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCE--E--EC-CCCCHHHHHHHHCC
T ss_conf             11236789999999876543103777888999999999849972898989--999--8--05-98999999999749

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.25  E-value=3.4e-06  Score=49.17  Aligned_cols=89  Identities=9%  Similarity=0.024  Sum_probs=64.7

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Q ss_conf             9993999997-8999667748999999998799--93999996767----------------------------488898
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .++.+++.|| +.||+.|......+.++.+++.  ++.++.|+.+.                            +..+++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH
T ss_conf             99949999993776554311206788655542467459999705862003566555666422257776611088316999


Q ss_pred             HCCCC------CCCEEEEEECCCEEEEEEE----CCCCCHHHHHHHHHHHC
Q ss_conf             77998------2778999969982398870----48538999999999549
Q 027830           95 SLNVH------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~------~~Pti~lf~~g~~~~~~~~----~g~~~~~~l~~~i~~~~  135 (218)
                      .|++.      .+++..+++.. |.+....    ..+++.+++...|+...
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~-G~I~~~~~~~~~~~r~~~E~Lr~l~alQ  161 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPK-QNLRQITVNDLPVGRDVDEALRLVKAFQ  161 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTT-SBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HCCCEECCCCCEEEEEEEECCC-CEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             8298216689467799997899-7699999846777828999999999753

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.25  E-value=1.1e-06  Score=51.70  Aligned_cols=89  Identities=9%  Similarity=0.045  Sum_probs=60.0

Q ss_pred             CCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-------------------------CHHHHHHC
Q ss_conf             3999399999789-99667748999999998799--93999996767-------------------------48889877
Q 027830           45 AGDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSL   96 (218)
Q Consensus        45 ~~~k~vlV~FyA~-WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~-------------------------~~~l~~~~   96 (218)
                      -.++.++|.||.. ||+.|....+.+.+...++.  ++.++.|..+.                         +..+++.|
T Consensus        29 ~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~y  108 (166)
T d1we0a1          29 LKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (166)
T ss_dssp             TSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             HCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             59986999984056780889999999987776415646998404556777777763134312445664458646899982


Q ss_pred             CCC------CCCEEEEEECCCEEEEEEECC----CCCHHHHHHHHHHH
Q ss_conf             998------277899996998239887048----53899999999954
Q 027830           97 NVH------VLPFFRFYRGAHGRVCSFSCT----NATIKKFKDALAKH  134 (218)
Q Consensus        97 ~I~------~~Pti~lf~~g~~~~~~~~~g----~~~~~~l~~~i~~~  134 (218)
                      ++.      ..|+..++... |.+.....+    +++.+++.+.|+..
T Consensus       109 gv~~~~~~~~~r~tfvID~~-G~I~~~~i~~~~~~r~~~eil~~lkal  155 (166)
T d1we0a1         109 DVLNEETGLADRGTFIIDPD-GVIQAIEINADGIGRDASTLINKVKAA  155 (166)
T ss_dssp             TCEETTTTEECEEEEEECTT-SBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEEEECCC-CCEEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf             89764468651148998899-948999976888888999999999851

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.18  E-value=1.8e-06  Score=50.60  Aligned_cols=91  Identities=14%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             HCCCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHCCCCEEEEEECC--CCHHHHHHCCCCCCCEEEEEECCCEEEEEEEC
Q ss_conf             1399939999978--9996677489999999987999399999676--74888987799827789999699823988704
Q 027830           44 HAGDKLVVVDFFS--PGCGGCKALHPKICQLAEMNPDVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSC  119 (218)
Q Consensus        44 ~~~~k~vlV~FyA--~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~--~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~  119 (218)
                      +.-.++|-+.+|.  ..|+.|..+...+++++..-..+.+...+.+  ++.+++.+|+|...|++.++.+|+..-..|. 
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~-   96 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYF-   96 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEE-
T ss_pred             HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEEE-
T ss_conf             8579987999994688761379999999999962897599995267620145777606664865999459960536997-


Q ss_pred             CCCCHHHHHHHHHHHC
Q ss_conf             8538999999999549
Q 027830          120 TNATIKKFKDALAKHT  135 (218)
Q Consensus       120 g~~~~~~l~~~i~~~~  135 (218)
                      |-..-.+|..||...+
T Consensus        97 GiP~GhEf~SlilaIl  112 (119)
T d1a8la1          97 GLPAGHEFAAFLEDIV  112 (119)
T ss_dssp             SCCCTTHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHH
T ss_conf             1267156899999999

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.13  E-value=1.2e-05  Score=46.27  Aligned_cols=106  Identities=16%  Similarity=0.200  Sum_probs=79.6

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCC--CCCCEEE
Q ss_conf             08956963699999813999399999789996677489999999987999-39999967674888987799--8277899
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNV--HVLPFFR  105 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I--~~~Pti~  105 (218)
                      +.+++ .+++.....  .+++.++.|+..- .....+...+.++|+++.+ +.|+.+|.+++....+.|++  ..+|.++
T Consensus         8 v~e~~-~~n~~~~~~--~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~   83 (133)
T d2djka1           8 IGEIG-PETYSDYMS--AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFA   83 (133)
T ss_dssp             SEECC-HHHHHHHHH--TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEE
T ss_pred             EECCC-HHHHHHHHC--CCCCEEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             66037-421999963--8997899990793-4799999999999998029458999707882999998367756688479


Q ss_pred             EEECCCEEEEEEE-CCCCCHHHHHHHHHHHCCCC
Q ss_conf             9969982398870-48538999999999549999
Q 027830          106 FYRGAHGRVCSFS-CTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       106 lf~~g~~~~~~~~-~g~~~~~~l~~~i~~~~~~~  138 (218)
                      ++.....+...+. .+..+.+.|.+|+.+.+...
T Consensus        84 i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gk  117 (133)
T d2djka1          84 IQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEECCCCCEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             9975889653588645579999999999998699

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=3e-05  Score=44.11  Aligned_cols=88  Identities=17%  Similarity=0.117  Sum_probs=56.1

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC-----------------------CHHHHHHCCCC
Q ss_conf             9993999997-89996677489999999987999--3999996767-----------------------48889877998
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE-----------------------HKSMCYSLNVH   99 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~-----------------------~~~l~~~~~I~   99 (218)
                      +.+++++.|| +.||+.|....+.+.++..++.+  +.++.|+.+.                       +..+++.|++.
T Consensus        28 g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~  107 (153)
T d1xvwa1          28 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  107 (153)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             99727998645434663011003455431212022211222452014689988645134406985033321068874201


Q ss_pred             ------CCCEEEEEECCCEEEEEEEC----CCCCHHHHHHHHHHH
Q ss_conf             ------27789999699823988704----853899999999954
Q 027830          100 ------VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKH  134 (218)
Q Consensus       100 ------~~Pti~lf~~g~~~~~~~~~----g~~~~~~l~~~i~~~  134 (218)
                            ..|+..+++.. |++.....    ..++...+.+.|...
T Consensus       108 ~~~~g~~~r~tfvID~~-G~I~~~~~~~~~~~~~~~~~~~~L~aL  151 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDRS-GIIRFAEMKQPGEVRDQRLWTDALAAL  151 (153)
T ss_dssp             ETTTTEECSEEEEECTT-SBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             HHCCCCEEEEEEEECCC-CEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             21268614269999899-979999981798546889999999862

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=8.6e-06  Score=46.99  Aligned_cols=44  Identities=27%  Similarity=0.259  Sum_probs=37.2

Q ss_pred             CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             39993999997-899966774899999999879993999996767
Q 027830           45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE   88 (218)
Q Consensus        45 ~~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~   88 (218)
                      -.+|++++.|| +.||+.|....+.+.++..++.++.++.|..+.
T Consensus        42 ~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~   86 (164)
T d1qxha_          42 FAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADL   86 (164)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESSC
T ss_pred             HCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             689749999952410210657777899998752342024687487

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.00  E-value=1.1e-05  Score=46.44  Aligned_cols=89  Identities=11%  Similarity=0.022  Sum_probs=60.9

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Q ss_conf             9993999997-8999667748999999998799--93999996767----------------------------488898
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      +.+++++.|| +.||+.|....+.|.+...++.  ++.++.|+.+.                            ...+++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99879999975403786999999998767764158826843544205667888865421054467563320465018999


Q ss_pred             HCCCC-----CCCEEEEEECCCEEEEE-E-E-C-CCCCHHHHHHHHHHHC
Q ss_conf             77998-----27789999699823988-7-0-4-8538999999999549
Q 027830           95 SLNVH-----VLPFFRFYRGAHGRVCS-F-S-C-TNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~-----~~Pti~lf~~g~~~~~~-~-~-~-g~~~~~~l~~~i~~~~  135 (218)
                      .|++.     ..|+..++... |++.. . . . ..++.+++.+.|+...
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~-G~I~~~~~~~~~~~~~~~eiL~~l~aLq  160 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKN-MKVRHAVINDLPLGRNADEMLRMVDALL  160 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETT-TEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCEEEEEEEECCC-CEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             759975664125789998378-7699999808998989999999999863

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2.1e-05  Score=44.89  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHH---HHCCC-CEEEEEECC
Q ss_conf             9993999997899966774899999999---87999-399999676
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLA---EMNPD-VQFLQVNYE   87 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la---~~~~~-v~~~~Vd~~   87 (218)
                      .+.+++|.|++-.|+||+++.+.+..+.   ...++ +.+......
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             9997799997788850488978877888876415775179999547

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.93  E-value=2.1e-05  Score=44.94  Aligned_cols=88  Identities=13%  Similarity=0.097  Sum_probs=60.0

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Q ss_conf             9993999997-8999667748999999998799--93999996767----------------------------488898
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .++++++.|| +.||+.|....+.+.+...++.  ++.++.|..+.                            ...+++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCEEEEEEEEHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             99829999960431975004433577768986147834774057679999988861676353466254433356318888


Q ss_pred             HCCCCC------CCEEEEEECCCEEEEEEE---C-CCCCHHHHHHHHHHH
Q ss_conf             779982------778999969982398870---4-853899999999954
Q 027830           95 SLNVHV------LPFFRFYRGAHGRVCSFS---C-TNATIKKFKDALAKH  134 (218)
Q Consensus        95 ~~~I~~------~Pti~lf~~g~~~~~~~~---~-g~~~~~~l~~~i~~~  134 (218)
                      .|++..      .++..++.. .|++....   . .+++.+++.+.|+..
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~-~G~I~~~~i~~~~~~~~~~EiL~~lkal  153 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAF  153 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCEEEEECC-CCEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             877512457845317999899-9989999980899898999999999974

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.93  E-value=0.00012  Score=40.89  Aligned_cols=88  Identities=10%  Similarity=0.043  Sum_probs=55.5

Q ss_pred             CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-----------------------CHHHHHHCCCCC
Q ss_conf             39993999997-899966774899999999879993999996767-----------------------488898779982
Q 027830           45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------------------HKSMCYSLNVHV  100 (218)
Q Consensus        45 ~~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~-----------------------~~~l~~~~~I~~  100 (218)
                      -.++.+++.|| +.||+.|....+.+.+...++.++.++.|..+.                       +..+.+.|++..
T Consensus        40 ~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~  119 (163)
T d1psqa_          40 FDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             GTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHEEEC
T ss_conf             38967999855420245325657788999874302416899956489999999980996123101342066777532412


Q ss_pred             --CC----EEEEEECCCEEEEEE--E--C-CCCCHHHHHHHHHH
Q ss_conf             --77----899996998239887--0--4-85389999999995
Q 027830          101 --LP----FFRFYRGAHGRVCSF--S--C-TNATIKKFKDALAK  133 (218)
Q Consensus       101 --~P----ti~lf~~g~~~~~~~--~--~-g~~~~~~l~~~i~~  133 (218)
                        ++    +.+++. ..|.+...  .  . ...+.+.+.+++++
T Consensus       120 ~~~~~~~Ra~fvID-~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         120 NEWHLLARAVFVLD-TDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEEC-TTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             CCCCCEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf             66653067899999-99979999972788888999999999964

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=8.3e-05  Score=41.78  Aligned_cols=102  Identities=11%  Similarity=0.119  Sum_probs=77.9

Q ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCC-CCEEEEEECCC
Q ss_conf             963699999813999399999789996677489999999987999-3999996767488898779982-77899996998
Q 027830           34 RHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHV-LPFFRFYRGAH  111 (218)
Q Consensus        34 s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-v~~~~Vd~~~~~~l~~~~~I~~-~Pti~lf~~g~  111 (218)
                      +.+++...+.  ++.+.++.||.+-- .-..+...+.++|+++.+ +.|+.+|.+++....+.+|+.. .|.+++.....
T Consensus         6 ~~~~~~~y~~--~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~   82 (125)
T d2b5ea3           6 DGSVFAQYVE--SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTE   82 (125)
T ss_dssp             CHHHHHHHHH--TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTT
T ss_pred             CHHHHHHHHH--CCCCEEEEEECCHH-HHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf             7777999985--49998999948858-89999999999999836906999974377189999869976688378985355


Q ss_pred             EEEEEEE------------CCCCCHHHHHHHHHHHCCCC
Q ss_conf             2398870------------48538999999999549999
Q 027830          112 GRVCSFS------------CTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       112 ~~~~~~~------------~g~~~~~~l~~~i~~~~~~~  138 (218)
                      +......            .+..+.+.|.+|+.+.+...
T Consensus        83 ~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GK  121 (125)
T d2b5ea3          83 DLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD  121 (125)
T ss_dssp             TEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             744113200000012345556678999999999997287

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.90  E-value=5.4e-05  Score=42.77  Aligned_cols=89  Identities=7%  Similarity=-0.039  Sum_probs=61.4

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-------------------------CHHHHHHCC
Q ss_conf             9993999997-8999667748999999998799--93999996767-------------------------488898779
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN   97 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~-------------------------~~~l~~~~~   97 (218)
                      .++.++++|| +.||+.|....+.|.+...++.  ++.+..|..+.                         +..+++.|+
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             99969999980457986588999998765430466379985166688788777525333332235644468899999958


Q ss_pred             CC------CCCEEEEEECCCEEEEE---EE-CCCCCHHHHHHHHHHHC
Q ss_conf             98------27789999699823988---70-48538999999999549
Q 027830           98 VH------VLPFFRFYRGAHGRVCS---FS-CTNATIKKFKDALAKHT  135 (218)
Q Consensus        98 I~------~~Pti~lf~~g~~~~~~---~~-~g~~~~~~l~~~i~~~~  135 (218)
                      +.      ..|...+++.. |.+..   +. ...++.+++.+.|+...
T Consensus       109 v~~~~~g~~~r~tfiID~~-G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQ-GIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTT-SBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEEECCH-HEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             9753478633469998711-6389996127886538999999999888

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1e-05  Score=46.61  Aligned_cols=87  Identities=11%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCC--------HHH---HHHC--CCCCCCEEEEEE
Q ss_conf             13999399999789996677489999999987999--39999967674--------888---9877--998277899996
Q 027830           44 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEH--------KSM---CYSL--NVHVLPFFRFYR  108 (218)
Q Consensus        44 ~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--v~~~~Vd~~~~--------~~l---~~~~--~I~~~Pti~lf~  108 (218)
                      +-.++++||.++|+||+.|.+..+.++++.++|.+  +.+..+.|.+.        .++   |+..  .-..-+++-+|.
T Consensus        21 ~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~~~~~~~~f~~~~  100 (184)
T d2f8aa1          21 SLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE  100 (184)
T ss_dssp             GGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred             HCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCE
T ss_conf             92998899999546687655550799975454312331589740355442224304666546510024553344333010


Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             99823988704853899999999954999
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAKHTPD  137 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  137 (218)
                      ...  +     .+.+...+-.|+.+..+.
T Consensus       101 ki~--V-----nG~~a~ply~~Lk~~~~~  122 (184)
T d2f8aa1         101 KCE--V-----NGAGAHPLFAFLREALPA  122 (184)
T ss_dssp             CCC--C-----SSTTCCHHHHHHHHHSCS
T ss_pred             EEE--E-----CCCCCCHHHHHHHHHCCC
T ss_conf             455--3-----079778799998740798

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00018  Score=40.04  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q ss_conf             08956963699999813999399999789996677489999999987999399999676748889877998277899996
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR  108 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~  108 (218)
                      ...|.+.++.+..+..  +..++|-|+..--..   ....|.++|+.+.++.|+.+..   ..++.++++.. |+|++|+
T Consensus         2 a~~l~~~~~~e~f~~~--~~v~VVGfF~~~~~~---~~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v~~-~~Ivl~k   72 (110)
T d1bjxa_           2 ATTLPDGAAAESLVES--SEVAVIGFFKDVESD---SAKQFLQAAEAIDDIPFGITSN---SDVFSKYQLDK-DGVVLFK   72 (110)
T ss_dssp             EEECCSHHHHHHHHHH--SSEEEEEECTTTTSH---HHHHHHHHHHHCSSSCEEEECC---SHHHHHTTCSS-CEEEEEE
T ss_pred             CEECCCHHHHHHHHCC--CCEEEEEEECCCCCH---HHHHHHHHHHHCCCCEEEEECC---HHHHHHCCCCC-CEEEEEC
T ss_conf             6074889999998602--973999997688856---8999999998476753999878---99999749999-9699963


Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             998239887048538999999999549999
Q 027830          109 GAHGRVCSFSCTNATIKKFKDALAKHTPDR  138 (218)
Q Consensus       109 ~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  138 (218)
                      ........+. +..+.+.|.+||..+.-+.
T Consensus        73 ~~de~~~~~~-~~~~~~~l~~fi~~~~~Pl  101 (110)
T d1bjxa_          73 KFDEGRNNFE-GEVTKENLLDFIKHNQLPL  101 (110)
T ss_dssp             SSSSSBCCCC-SCCCHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCCCC-CCCCHHHHHHHHHHCCCCC
T ss_conf             6775643468-8878899999999758485

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=7.9e-05  Score=41.87  Aligned_cols=89  Identities=13%  Similarity=0.071  Sum_probs=63.5

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Q ss_conf             9993999997-8999667748999999998799--93999996767----------------------------488898
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .++.+++.|| +.||+.|......+.+...++.  ++.++.|.++.                            +..+++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCHHHHCCCCCCCCCEEECCCHHHHH
T ss_conf             99859999953103666325638999988874357737998735888998766504365467578763557345129999


Q ss_pred             HCCCC------CCCEEEEEECCCEEEEE---EE-CCCCCHHHHHHHHHHHC
Q ss_conf             77998------27789999699823988---70-48538999999999549
Q 027830           95 SLNVH------VLPFFRFYRGAHGRVCS---FS-CTNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~------~~Pti~lf~~g~~~~~~---~~-~g~~~~~~l~~~i~~~~  135 (218)
                      .|++.      .++...++... |.+..   +. ..+++.+++...|+...
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~-g~Ir~~~~~~~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGK-GVLRQITVNDLPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTT-SBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCEEEEEEEEECCC-CCEEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf             8499744688456799988799-8589998437885507889999988630

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.9e-05  Score=41.62  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=58.1

Q ss_pred             CCCEEEEEEECCCCH-HHHHHHHHHHHHHHHC---C---CCEEEEEECCC----------------------------CH
Q ss_conf             999399999789996-6774899999999879---9---93999996767----------------------------48
Q 027830           46 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMN---P---DVQFLQVNYEE----------------------------HK   90 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~-~Ck~l~p~~~~la~~~---~---~v~~~~Vd~~~----------------------------~~   90 (218)
                      .+|++||.|+.+||+ .|....+.+.++.+.+   .   .+.+..+..+.                            ..
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             99989999977777654332037789999986201244431000112577765488888777631887530257567766


Q ss_pred             HHHHHCCCCCC---------------CEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             88987799827---------------78999969982398870485389999999995499
Q 027830           91 SMCYSLNVHVL---------------PFFRFYRGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus        91 ~l~~~~~I~~~---------------Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  136 (218)
                      .+...|++...               +++.++... |++..+..+..+.+++.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~-G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPD-GEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTT-SCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHEEEECCCCCCCCCCEEECCCEEEEECCC-CCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             77653311310146777787257500028999899-8599997999998999999999986

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.00028  Score=38.98  Aligned_cols=89  Identities=9%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-------------------------------CHH
Q ss_conf             9993999997-8999667748999999998799--93999996767-------------------------------488
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------------HKS   91 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~-------------------------------~~~   91 (218)
                      +++++++.|| +.||+.|......+.+...++.  ++.++.|.++.                               +..
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf             99869999978988975526679999878776404630003455555454666544311112365558630510586319


Q ss_pred             HHHHCCCC------------CCCEEEEEECCCEEEEEEE----CCCCCHHHHHHHHHHHC
Q ss_conf             89877998------------2778999969982398870----48538999999999549
Q 027830           92 MCYSLNVH------------VLPFFRFYRGAHGRVCSFS----CTNATIKKFKDALAKHT  135 (218)
Q Consensus        92 l~~~~~I~------------~~Pti~lf~~g~~~~~~~~----~g~~~~~~l~~~i~~~~  135 (218)
                      +++.|++.            ......++... +.+....    ..+|+.+++...|+...
T Consensus       106 va~~ygv~~~~~~~~~~~~~~~RatFIID~~-g~Ir~~~~~~~~~gR~~dEiLr~l~alq  164 (220)
T d1prxa_         106 LAILLGMLDPAEKDEKGMPVTARVVFVFGPD-KKLKLSILYPATTGRNFDEILRVVISLQ  164 (220)
T ss_dssp             HHHHTTSSCSCTTCSSSCCTTCCEEEEECTT-SBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCEEEEEEEEEECCC-CCEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             9998678563235555522456789997476-5326999926886656388999999876

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.75  E-value=6.4e-05  Score=42.37  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=61.5

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Q ss_conf             9993999997-8999667748999999998799--93999996767----------------------------488898
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      ++++++|.|| +.||+.|......|.+....+.  ++.++.|+++.                            ...+++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  105 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  105 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH
T ss_conf             99869999988877976410047786554543058815742157759999867644565435555677616717659999


Q ss_pred             HCCCC-----CCCEEEEEECCCEEEEEEEC----CCCCHHHHHHHHHHHC
Q ss_conf             77998-----27789999699823988704----8538999999999549
Q 027830           95 SLNVH-----VLPFFRFYRGAHGRVCSFSC----TNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~-----~~Pti~lf~~g~~~~~~~~~----g~~~~~~l~~~i~~~~  135 (218)
                      .|++.     ..++..++..+ |.+.....    ..++.+++.+.|+...
T Consensus       106 ~ygv~~~~~~~~R~tfiId~~-G~I~~~~~~~~~~~~~~~eil~~l~~lq  154 (170)
T d2h01a1         106 SYDVLFNESVALRAFVLIDKQ-GVVQHLLVNNLALGRSVDEILRLIDALQ  154 (170)
T ss_dssp             HTTCEETTTEECCEEEEECTT-SBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCEEEEEEECCC-CEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             809955566320226898679-8688999805888989999999999851

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.65  E-value=9.5e-05  Score=41.46  Aligned_cols=45  Identities=22%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             39993999997-8999667748999999998799939999967674
Q 027830           45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH   89 (218)
Q Consensus        45 ~~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~   89 (218)
                      -.++++++.|| +.||+.|....+.|.+...++.++.++.|.++..
T Consensus        40 ~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~~   85 (164)
T d1q98a_          40 FASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLP   85 (164)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCH
T ss_pred             HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf             1995899996676444756177999999899742525886328838

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.49  E-value=0.00056  Score=37.37  Aligned_cols=72  Identities=13%  Similarity=0.204  Sum_probs=53.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHH
Q ss_conf             99997899966774899999999879993999996767488898779982778999969982398870485389999999
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus        51 lV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      +..|..+||+.|......+.+    ..++.+..+|+++++.+..+|+.. +|.+.  .++. ....   ...+.+.+.+|
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~~~~~~~vdI~~d~~l~~~y~~~-IPVl~--~~~~-~~l~---w~fd~~~l~~~   70 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----ARAGAFFSVFIDDDAALESAYGLR-VPVLR--DPMG-RELD---WPFDAPRLRAW   70 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TTCCCEEEEECTTCHHHHHHHTTT-CSEEE--CTTC-CEEE---SCCCHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH----CCCCCEEEEECCCCHHHHHHHCCE-EEEEE--ECCE-EEEC---CCCCHHHHHHH
T ss_conf             899988996179999999986----069847999745899999974980-13999--7991-3985---86599999999


Q ss_pred             HHH
Q ss_conf             995
Q 027830          131 LAK  133 (218)
Q Consensus       131 i~~  133 (218)
                      +..
T Consensus        71 L~~   73 (75)
T d1ttza_          71 LDA   73 (75)
T ss_dssp             HHT
T ss_pred             HHC
T ss_conf             854

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=0.00016  Score=40.23  Aligned_cols=43  Identities=19%  Similarity=0.164  Sum_probs=32.7

Q ss_pred             CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             39993999997-899966774899999999879993999996767
Q 027830           45 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE   88 (218)
Q Consensus        45 ~~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~   88 (218)
                      -.++++++.|| +.||+.|....+.+.+....+ ++.++.|..+.
T Consensus        41 ~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d~   84 (166)
T d1xvqa_          41 FRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKDL   84 (166)
T ss_dssp             GTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             HCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCH
T ss_conf             099489998530100223177899986331001-22222235433

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.39  E-value=0.00014  Score=40.58  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=47.6

Q ss_pred             HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH-----HHHHCCCCCCCEEEEEECCC
Q ss_conf             999998139993999997899966774899999999879993999996767488-----89877998277899996998
Q 027830           38 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-----MCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        38 ~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~-----l~~~~~I~~~Pti~lf~~g~  111 (218)
                      |.+...+ +++  ++.|..+||++|......|.++.-.+..+.+..+|.+.+..     +.+..+...+|.+.  .+|+
T Consensus         4 ~v~~~i~-~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIf--i~g~   77 (105)
T d1ktea_           4 FVNSKIQ-PGK--VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGKE   77 (105)
T ss_dssp             HHHHHCC-TTC--EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETTE
T ss_pred             HHHHHHC-CCC--EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE--ECCE
T ss_conf             8997701-597--999977999059999999998398444124652035664188888885036787676799--9997

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.37  E-value=0.00012  Score=40.89  Aligned_cols=64  Identities=11%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEEEECCCCH-HHHHHHHHHHHHHHHC----CCCEEEEEECC
Q ss_conf             999999853345708956963699999813999399999789996-6774899999999879----99399999676
Q 027830           16 EEAHPSSPLVHRLALELGRHKDLVESLWHAGDKLVVVDFFSPGCG-GCKALHPKICQLAEMN----PDVQFLQVNYE   87 (218)
Q Consensus        16 ~~~~p~~~~~~~~v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~-~Ck~l~p~~~~la~~~----~~v~~~~Vd~~   87 (218)
                      ..++|.=.+...+-..++..+        -.+++++|.||..||+ .|....+.+.++.+.+    .++.++.|..+
T Consensus         8 ~~~~p~F~l~d~~G~~vsl~d--------~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1           8 NYEVEPFTFQNQDGKNVSLES--------LKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             CEECCCCEEECTTSCEEETGG--------GTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCCCCEEEECCCCCEECHHH--------HCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             781798578859979981899--------699889999755535553210030244445541133322101022121

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.36  E-value=0.0012  Score=35.57  Aligned_cols=100  Identities=11%  Similarity=0.115  Sum_probs=72.9

Q ss_pred             CEEECCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q ss_conf             0895696369999981399939999978999667748999999998799-939999967674888987799827789999
Q 027830           29 ALELGRHKDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        29 v~~i~s~~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf  107 (218)
                      |..|++.++++..+.. .+..++|-|+..--..   ....|.++|..+. ++.|+...   +..+++++++. .|++++|
T Consensus         1 v~~i~~~~e~~~F~~~-~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v~-~~~vvlf   72 (102)
T d1a8ya2           1 VELIEGERELQAFENI-EDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK-LNEIDFY   72 (102)
T ss_dssp             EEEECSHHHHHHHTTC-CSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCCC-TTCEEEE
T ss_pred             CEEECCHHHHHHHHCC-CCCEEEEEEECCCCCH---HHHHHHHHHHHCCCCCEEEEEC---CHHHHHHCCCC-CCCEEEE
T ss_conf             9552589999998636-8988999998888827---8999999999717773599988---79999983999-9977896


Q ss_pred             ECCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             69982398870485389999999995499
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDALAKHTP  136 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  136 (218)
                      +.=......|.+...+.++|..||.++..
T Consensus        73 r~fde~~~~~~~~~~t~~~i~~Fi~~n~r  101 (102)
T d1a8ya2          73 EAFMEEPVTIPDKPNSEEEIVNFVEEHRR  101 (102)
T ss_dssp             CTTCSSEEECSSSSCCHHHHHHHHHHTCC
T ss_pred             EECCCCCEECCCCCCCHHHHHHHHHHHCC
T ss_conf             11677753168998999999999998235

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.33  E-value=0.00079  Score=36.59  Aligned_cols=66  Identities=12%  Similarity=0.237  Sum_probs=45.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH---HHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHH
Q ss_conf             999978999667748999999998799939999967674888---98779982778999969982398870485389999
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM---CYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKF  127 (218)
Q Consensus        51 lV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l---~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l  127 (218)
                      ++.|..+||++|......+.+.     ++.+..+|++.+++.   .+.++..++|.+.  .+|+ .+     |+.+.+.|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~-~i-----gGf~~d~l   69 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGE-HW-----SGFRPERI   69 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTE-EE-----ESCCHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHCCCCCCEEE--ECCE-EE-----ECCCHHHH
T ss_conf             9999489896089999999973-----9964899724898999999984799709799--9999-99-----58898499


Q ss_pred             HH
Q ss_conf             99
Q 027830          128 KD  129 (218)
Q Consensus       128 ~~  129 (218)
                      .+
T Consensus        70 ~~   71 (74)
T d1r7ha_          70 KQ   71 (74)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             88

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0006  Score=37.21  Aligned_cols=54  Identities=15%  Similarity=0.226  Sum_probs=40.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH---HHHCCCCCCCEEEEEECCC
Q ss_conf             999978999667748999999998799939999967674888---9877998277899996998
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM---CYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l---~~~~~I~~~Pti~lf~~g~  111 (218)
                      ++.|..+||++|......+.+.     ++.+..+|++.+++.   .+..+...+|.+.+  +|.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~   59 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDL   59 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTE
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCEEEEEEECCCHHHHHHHHHCCCCCCCEEEE--CCE
T ss_conf             9999389895379999999862-----95368986058999999988617997798999--999

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00015  Score=40.42  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----HHHHHHC--CCCCCCEEEEEECCCEEEEEEECCCCCH
Q ss_conf             999978999667748999999998799939999967674----8889877--9982778999969982398870485389
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSL--NVHVLPFFRFYRGAHGRVCSFSCTNATI  124 (218)
Q Consensus        51 lV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~----~~l~~~~--~I~~~Pti~lf~~g~~~~~~~~~g~~~~  124 (218)
                      +|.|..+||++|.+....+.++...+.++.+..+|.+.+    ..+....  ++..+|.+.  .+|+ .+     |+.  
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIf--i~g~-~I-----GG~--   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQQ-HI-----GGY--   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETTE-EE-----ESS--
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEE--ECCE-EE-----ECH--
T ss_conf             9999579997699999999982997777339999657898999999998358999879899--9999-99-----778--


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999549
Q 027830          125 KKFKDALAKHT  135 (218)
Q Consensus       125 ~~l~~~i~~~~  135 (218)
                      +++.+++++.+
T Consensus        73 ~el~~~~~~~~   83 (85)
T d1egoa_          73 TDFAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998637

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.0015  Score=35.09  Aligned_cols=90  Identities=18%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             CCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHC----C-CCEEEEEECCCC----------------------------H
Q ss_conf             39993999997899966-774899999999879----9-939999967674----------------------------8
Q 027830           45 AGDKLVVVDFFSPGCGG-CKALHPKICQLAEMN----P-DVQFLQVNYEEH----------------------------K   90 (218)
Q Consensus        45 ~~~k~vlV~FyA~WC~~-Ck~l~p~~~~la~~~----~-~v~~~~Vd~~~~----------------------------~   90 (218)
                      -.+|++||.||..||+. |..+...+..+...+    . .+.+..+..+..                            .
T Consensus        24 ~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (169)
T d2b7ka1          24 LLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVK  103 (169)
T ss_dssp             GTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHH
T ss_pred             HCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             79998999996653677321034443211100111355322034200233457665631000134554322233155555


Q ss_pred             HHH----------------HHCCCCCCCEEEEEECCCEEEEEEECCCCCHH----HHHHHHHHHC
Q ss_conf             889----------------87799827789999699823988704853899----9999999549
Q 027830           91 SMC----------------YSLNVHVLPFFRFYRGAHGRVCSFSCTNATIK----KFKDALAKHT  135 (218)
Q Consensus        91 ~l~----------------~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~----~l~~~i~~~~  135 (218)
                      ...                ..+.|...|++.++... |++..+..+..+.+    .|.+-|++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~-G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         104 NACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPE-GQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             HHHHHTTC--------------CTTTCCCEEEECTT-SCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHEEEEECCCCCCCCCCEEECCCEEEEECCC-CEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             566543113341256776657346303127999999-8199997899997899999999999986

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=96.97  E-value=0.0034  Score=33.20  Aligned_cols=89  Identities=8%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC----------------------------CHHHHH
Q ss_conf             9993999997-8999667748999999998799--93999996767----------------------------488898
Q 027830           46 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY   94 (218)
Q Consensus        46 ~~k~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~--~v~~~~Vd~~~----------------------------~~~l~~   94 (218)
                      .++++++.|| +.||+.|......|.+...++.  ++.++.|.+|.                            +..+++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             99869999972778965514578888754442156468984147667677677641676456678771202452008999


Q ss_pred             HCCCCC----------C--CEEEEEECCCEEEEE---EE-CCCCCHHHHHHHHHHHC
Q ss_conf             779982----------7--789999699823988---70-48538999999999549
Q 027830           95 SLNVHV----------L--PFFRFYRGAHGRVCS---FS-CTNATIKKFKDALAKHT  135 (218)
Q Consensus        95 ~~~I~~----------~--Pti~lf~~g~~~~~~---~~-~g~~~~~~l~~~i~~~~  135 (218)
                      .|++..          +  -+..++... +.+..   +. ..+++.+++...|+...
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~-g~Ir~~~~~~~~~gr~~~EiLr~l~aLQ  164 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFISPE-KKIKATVLYPATTGRNAHEILRVLKSLQ  164 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEECTT-SBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             8589651113676544145666998675-3389999927876658999999999988

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.87  E-value=0.0023  Score=34.10  Aligned_cols=72  Identities=17%  Similarity=0.339  Sum_probs=53.3

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHH
Q ss_conf             99978999667748999999998799-93999996767488898779982778999969982398870485389999999
Q 027830           52 VDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDA  130 (218)
Q Consensus        52 V~FyA~WC~~Ck~l~p~~~~la~~~~-~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~  130 (218)
                      |..+.+.|..|..+....++++.++. +..+.+|  ++..++. +|+|.++|.++  .||+   ..+.+.-.+.+++.+|
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalv--Idg~---vv~~G~vPs~~ei~~~   75 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLA--VDGE---LKIMGRVASKEEIKKI   75 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEE--ETTE---EEECSSCCCHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHH-HCCCCCCCEEE--ECCE---EEEEECCCCHHHHHHH
T ss_conf             9996899953789999999999975995599980--7999998-75976788799--9999---9997348999999997


Q ss_pred             H
Q ss_conf             9
Q 027830          131 L  131 (218)
Q Consensus       131 i  131 (218)
                      |
T Consensus        76 L   76 (77)
T d1iloa_          76 L   76 (77)
T ss_dssp             C
T ss_pred             H
T ss_conf             4

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.69  E-value=0.002  Score=34.46  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=39.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH----HHHHHCCCCCCCEEEEEECCC
Q ss_conf             9999789996677489999999987999399999676748----889877998277899996998
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~----~l~~~~~I~~~Pti~lf~~g~  111 (218)
                      +..|..+||++|.+....+++.     ++.+..+|++.+.    .+.+..+...+|.+.  .+|+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~   60 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEE--ECCE
T ss_conf             8999479997599999999874-----99817870522199999999984898788699--9998

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0093  Score=30.90  Aligned_cols=54  Identities=17%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---HHHHHHCCCCCCCEEEEEECCC
Q ss_conf             999978999667748999999998799939999967674---8889877998277899996998
Q 027830           51 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFRFYRGAH  111 (218)
Q Consensus        51 lV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~---~~l~~~~~I~~~Pti~lf~~g~  111 (218)
                      ++.|..+||++|+++...+++.     ++.+..+|.+.+   ..+.+..+...+|.+.  .+|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~--i~g~   63 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGK   63 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHCCCCCCEEE--ECCE
T ss_conf             8999789997799999999974-----9972999716869999999982996588899--9998

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0019  Score=34.61  Aligned_cols=84  Identities=7%  Similarity=0.028  Sum_probs=34.9

Q ss_pred             CHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCC----HHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHH-HHCCC
Q ss_conf             48889877998277899996998239887048538----9999999995499---9999999889987889999-81998
Q 027830           89 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNAT----IKKFKDALAKHTP---DRCGLGPTKGLEEKELLAL-AANKD  160 (218)
Q Consensus        89 ~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~----~~~l~~~i~~~~~---~~~~~~~~~~l~~~~l~~~-~~~~~  160 (218)
                      ...+.++++|+|+||++  .+|+..+.....+..+    .+++.+-++..+.   .........+..-..+... .....
T Consensus        39 ~~~~a~~~gi~GtPtfi--VnGky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~~~~~~~eG~~Y~~l~~p~~~~~~  116 (195)
T d1un2a_          39 QEKAAADVQLRGVPAMF--VNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAPQ  116 (195)
T ss_dssp             HHHHHHHTTCCSSSEEE--ETTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSCCTTCCS
T ss_pred             HHHHHHHHCCCCCCEEE--ECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCE
T ss_conf             99999983897388799--8882650454225210025699999999999847444567787899751578888999966


Q ss_pred             CEEEECCCCCCCCC
Q ss_conf             31431799999999
Q 027830          161 LSFNYTPKPHPMPA  174 (218)
Q Consensus       161 ~v~~y~p~~~~~p~  174 (218)
                      ++.|++..|.+|-.
T Consensus       117 VvEffsy~Cp~C~~  130 (195)
T d1un2a_         117 VLEFFSFFCPHCYQ  130 (195)
T ss_dssp             EEEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCC
T ss_conf             99998169922001

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.27  E-value=0.11  Score=25.15  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE--EEECCC----------------CHHHHHHCCCCCCCEEEEE
Q ss_conf             9993999997899966774899999999879993999--996767----------------4888987799827789999
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFL--QVNYEE----------------HKSMCYSLNVHVLPFFRFY  107 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~--~Vd~~~----------------~~~l~~~~~I~~~Pti~lf  107 (218)
                      .-+.|+=+|.+.||..|-.....+.++++. ++|..+  .||..+                .......++..++||-.++
T Consensus         4 ~~~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~v   82 (225)
T d2axoa1           4 AVKGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAI   82 (225)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEE
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             777189984379999978899999986178-9889999606600035877888781255899999986098877721489


Q ss_pred             ECCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             6998239887048538999999999549
Q 027830          108 RGAHGRVCSFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       108 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~  135 (218)
                      .+|..   ...  ..+...+...|....
T Consensus        83 vnG~~---~~~--gs~~~~~~~~i~~~~  105 (225)
T d2axoa1          83 LNGRD---HVK--GADVRGIYDRLDAFK  105 (225)
T ss_dssp             ETTTE---EEE--TTCHHHHHHHHHHHH
T ss_pred             EECCC---CCC--CCCHHHHHHHHHHHH
T ss_conf             80721---236--348889999999876

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.89  E-value=0.016  Score=29.59  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=27.1

Q ss_pred             CCCCCCCCCHHHHHHHHHCCC--CEEEECCCCCCC
Q ss_conf             999988998788999981998--314317999999
Q 027830          140 GLGPTKGLEEKELLALAANKD--LSFNYTPKPHPM  172 (218)
Q Consensus       140 ~~~~~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~  172 (218)
                      ....+..++.++|+..+++.+  +|+||+|||+++
T Consensus         9 ~~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~   43 (124)
T d1a8ya1           9 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDK   43 (124)
T ss_dssp             CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSH
T ss_pred             CCCCCEECCHHHHHHHHHHCCEEEEEEECCCCCCH
T ss_conf             99853798888899999739849999977986225

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.87  E-value=0.008  Score=31.23  Aligned_cols=37  Identities=11%  Similarity=-0.051  Sum_probs=28.9

Q ss_pred             CCCCCHHHHHHHHHCCC--CEEEECCCCCCCCCCCCCCC
Q ss_conf             88998788999981998--31431799999999741111
Q 027830          144 TKGLEEKELLALAANKD--LSFNYTPKPHPMPAPAVEEV  180 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~~~~~~  180 (218)
                      +..|++.+|+..+....  +|.||+|||.+|..++-+..
T Consensus         4 ~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~p~f~kl   42 (122)
T d2c0ga2           4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAF   42 (122)
T ss_dssp             CEECCTTTHHHHHTTSSEEEEEEEESSCCSHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf             698676728999841981899998998974248789999

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.71  E-value=0.015  Score=29.75  Aligned_cols=40  Identities=10%  Similarity=0.016  Sum_probs=30.3

Q ss_pred             CCCCCCCHHHHHHHHHCCC--CEEEECCCCCCCCCCCCCCCC
Q ss_conf             9988998788999981998--314317999999997411112
Q 027830          142 GPTKGLEEKELLALAANKD--LSFNYTPKPHPMPAPAVEEVG  181 (218)
Q Consensus       142 ~~~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~~~~~~~  181 (218)
                      ..+.+|++.+|+.++....  +|.||+|||.+|..++-..++
T Consensus         4 ~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la   45 (122)
T d1g7ea_           4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLA   45 (122)
T ss_dssp             SSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHH
T ss_pred             CCEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf             746988777499999609809999955776853599999999

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=93.00  E-value=0.005  Score=32.31  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=25.9

Q ss_pred             CCCCCCCHHHHHHHHHCCC---CEEEECCCCCCCCCC
Q ss_conf             9988998788999981998---314317999999997
Q 027830          142 GPTKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       142 ~~~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      |++..++.++|+.++.+..   +|.||+|||++|..+
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~   38 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKAL   38 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHH
T ss_pred             CCCEECCCCCHHHHHHCCCCCEEEEEEECCCCCCCCC
T ss_conf             2957936578899984489979999980646656534

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=0.024  Score=28.69  Aligned_cols=35  Identities=11%  Similarity=0.010  Sum_probs=28.1

Q ss_pred             CCCCCCCCHHHHHHHHHCCC--CEEEECCCCCCCCCC
Q ss_conf             99988998788999981998--314317999999997
Q 027830          141 LGPTKGLEEKELLALAANKD--LSFNYTPKPHPMPAP  175 (218)
Q Consensus       141 ~~~~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~  175 (218)
                      -..+..++.++|+.++.+++  ++.||+|||.+|...
T Consensus         9 ~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~   45 (119)
T d2b5ea4           9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNM   45 (119)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHH
T ss_pred             CCCCEECCHHHHHHHHHCCCEEEEEEECCCCCCCCCC
T ss_conf             9951892788899998569949999977866764322

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.34  E-value=0.31  Score=22.81  Aligned_cols=88  Identities=15%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEE
Q ss_conf             36999998139993999997899966774899999999879993999996767488898779982778999969982398
Q 027830           36 KDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC  115 (218)
Q Consensus        36 ~~~~~~l~~~~~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~  115 (218)
                      +++...+.+ =.++|-+..+...|..|..+...+++++..-..+.+..-+.          +....|++.+..+|...-.
T Consensus         8 ~QLk~~f~~-l~~~V~l~~~~~~~~~s~el~~~l~eva~lSdkI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI   76 (102)
T d1hyua3           8 TQLRAYLEK-LTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNT----------LPVRKPSFLITNPGSQQGP   76 (102)
T ss_dssp             HHHHHHHTT-CCSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTT----------SSSCSSEEEEECTTCCCSC
T ss_pred             HHHHHHHHH-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCC----------CCCCCCEEEEECCCCEEEE
T ss_conf             999999995-79988999995897658999999999985188769997378----------8777975999459987103


Q ss_pred             EEECCCCCHHHHHHHHHHHC
Q ss_conf             87048538999999999549
Q 027830          116 SFSCTNATIKKFKDALAKHT  135 (218)
Q Consensus       116 ~~~~g~~~~~~l~~~i~~~~  135 (218)
                      .|. |-..-.+|..+|...+
T Consensus        77 ~F~-GiP~GhEF~Slilail   95 (102)
T d1hyua3          77 RFA-GSPLGHEFTSLVLALL   95 (102)
T ss_dssp             EEE-SCCCGGGHHHHHHHHH
T ss_pred             EEE-CCCCCCCHHHHHHHHH
T ss_conf             896-0788510889999998

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.91  E-value=0.34  Score=22.58  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             HHHHHHHHCCCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HHCCCCCCCEEEEE
Q ss_conf             69999981399939999978-----9996677489999999987999399999676748889----87799827789999
Q 027830           37 DLVESLWHAGDKLVVVDFFS-----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFY  107 (218)
Q Consensus        37 ~~~~~l~~~~~k~vlV~FyA-----~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~----~~~~I~~~Pti~lf  107 (218)
                      ..+..+ + ++ +|+| |.-     |.|++|+.....+.+    + ++.+..+|.+.+.++.    +..+...+|.+.  
T Consensus         7 ~i~~~i-~-~~-~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~----~-~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF--   75 (109)
T d1wika_           7 GLKVLT-N-KA-SVML-FMKGNKQEAKCGFSKQILEILNS----T-GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY--   75 (109)
T ss_dssp             CHHHHH-T-TS-SEEE-EESSTTTCCCSSTHHHHHHHHHH----T-CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE--
T ss_pred             HHHHHH-H-CC-CEEE-EECCCCCCCCCHHHHHHHHHHHH----C-CCCCEEEEECCCHHHHHHHHHHCCCCCCCEEE--
T ss_conf             999998-5-39-8899-96789999988389999999996----0-78854997534177899999855999788688--


Q ss_pred             ECCC
Q ss_conf             6998
Q 027830          108 RGAH  111 (218)
Q Consensus       108 ~~g~  111 (218)
                      .+|+
T Consensus        76 i~g~   79 (109)
T d1wika_          76 VRGD   79 (109)
T ss_dssp             CSSS
T ss_pred             ECCE
T ss_conf             9998

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.04  Score=27.53  Aligned_cols=33  Identities=18%  Similarity=0.035  Sum_probs=26.0

Q ss_pred             CCCCCCHHHHHHHHHCCC--CEEEECCCCCCCCCC
Q ss_conf             988998788999981998--314317999999997
Q 027830          143 PTKGLEEKELLALAANKD--LSFNYTPKPHPMPAP  175 (218)
Q Consensus       143 ~~~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~  175 (218)
                      .+..++.++|+..+.+.+  ++.||++||.+|..+
T Consensus         8 ~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~   42 (120)
T d1meka_           8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKAL   42 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTT
T ss_pred             CEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf             71896888899999669929999989986876433

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.52  E-value=0.032  Score=28.01  Aligned_cols=35  Identities=14%  Similarity=0.029  Sum_probs=26.5

Q ss_pred             CCCCCCCCHHHHHHHHHCCC---CEEEECCCCCCCCCC
Q ss_conf             99988998788999981998---314317999999997
Q 027830          141 LGPTKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       141 ~~~~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      -+.+..++..+|+..+.+..   +++||+|||.+|..+
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~   48 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRL   48 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHH
T ss_pred             CCCCEEECCCCHHHHHHCCCCCEEEEEEECCCCCCCHH
T ss_conf             99748954769899983689979999984447543025

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=88.07  E-value=0.08  Score=25.93  Aligned_cols=32  Identities=9%  Similarity=0.105  Sum_probs=23.8

Q ss_pred             CCCCCHHHHHHHHHCCC---CEEEECCCCCCCCCC
Q ss_conf             88998788999981998---314317999999997
Q 027830          144 TKGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       144 ~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      +..+++++|+..+.+.+   ++.||++||.+|..+
T Consensus         4 V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~   38 (108)
T d1thxa_           4 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLM   38 (108)
T ss_dssp             EEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHH
T ss_pred             CEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf             53988888999998389939999987998875410

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=88.05  E-value=0.04  Score=27.52  Aligned_cols=31  Identities=6%  Similarity=0.109  Sum_probs=23.0

Q ss_pred             CCCCHHHHHHHHHCCC---CEEEECCCCCCCCCC
Q ss_conf             8998788999981998---314317999999997
Q 027830          145 KGLEEKELLALAANKD---LSFNYTPKPHPMPAP  175 (218)
Q Consensus       145 ~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~~  175 (218)
                      ..+++.+|+..+.+++   ++.||++||++|..+
T Consensus         2 ~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~   35 (104)
T d1fb6a_           2 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLI   35 (104)
T ss_dssp             EECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHH
T ss_pred             EECCHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             6895343899997089939999986864776535

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.04  Score=27.52  Aligned_cols=32  Identities=13%  Similarity=-0.016  Sum_probs=23.2

Q ss_pred             CCCCCCHHHHHHHHHCCC---CEEEECCCCCCCCC
Q ss_conf             988998788999981998---31431799999999
Q 027830          143 PTKGLEEKELLALAANKD---LSFNYTPKPHPMPA  174 (218)
Q Consensus       143 ~~~~l~~~~l~~~~~~~~---~v~~y~p~~~~~p~  174 (218)
                      .+.++++++|+..+.+..   ++.||++||++|..
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~   37 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKM   37 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHH
T ss_pred             CCEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             84698888899999828994999997898877533

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.071  Score=26.20  Aligned_cols=42  Identities=19%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHH---HHHHHCCC-CEEEEEECC
Q ss_conf             9993999997899966774899999---99987999-399999676
Q 027830           46 GDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPD-VQFLQVNYE   87 (218)
Q Consensus        46 ~~k~vlV~FyA~WC~~Ck~l~p~~~---~la~~~~~-v~~~~Vd~~   87 (218)
                      .+++.++.|++-+|+||..+.|.+.   ++.+.+++ +.|..+...
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             9996699998169922001124555799887526877379997347

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=84.86  E-value=0.061  Score=26.55  Aligned_cols=31  Identities=10%  Similarity=-0.007  Sum_probs=22.8

Q ss_pred             CCCCHHHHHHHHHCCC--CEEEECCCCCCCCCC
Q ss_conf             8998788999981998--314317999999997
Q 027830          145 KGLEEKELLALAANKD--LSFNYTPKPHPMPAP  175 (218)
Q Consensus       145 ~~l~~~~l~~~~~~~~--~v~~y~p~~~~~p~~  175 (218)
                      ..+++++|+..+.+..  ++.||+|||.+|..+
T Consensus         3 i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~   35 (105)
T d1nw2a_           3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMM   35 (105)
T ss_dssp             EEECTTTHHHHTTSSSCEEEEEECTTCHHHHHH
T ss_pred             EEECHHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf             998789999998589929999977898885311

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.96  Score=20.21  Aligned_cols=72  Identities=7%  Similarity=0.031  Sum_probs=47.2

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             99789996677489999999987999399999676748889877998277899996998239887048538999999999
Q 027830           53 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATIKKFKDALA  132 (218)
Q Consensus        53 ~FyA~WC~~Ck~l~p~~~~la~~~~~v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~~~~l~~~i~  132 (218)
                      .|+.++|++|++..-.+....-.   +.+..++.+....+.+..+-..+|++.. .+|.  +.      .....|.++|+
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi~---~e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg~--~i------~eS~~I~~yLd   70 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNIP---VELHVLLNDDAETPTRMVGQKQVPILQK-DDSR--YM------PESMDIVHYVD   70 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTCC---CEEEECCTTTTHHHHHHHSSSCCCEEEE-TTTE--EE------ECHHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHCCCCCEEEEEE-CCCC--EE------ECHHHHHHHHH
T ss_conf             97268997208799999971987---4322212116399997698882479997-6997--98------56999999998


Q ss_pred             HHCC
Q ss_conf             5499
Q 027830          133 KHTP  136 (218)
Q Consensus       133 ~~~~  136 (218)
                      +..+
T Consensus        71 ~~~G   74 (75)
T d1g7oa2          71 KLDG   74 (75)
T ss_dssp             HHTT
T ss_pred             HHHC
T ss_conf             8649

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=80.40  E-value=1.3  Score=19.46  Aligned_cols=84  Identities=8%  Similarity=0.082  Sum_probs=57.8

Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CC--CEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCC
Q ss_conf             993999997899966774899999999879-99--399999676748889877998277899996998239887048538
Q 027830           47 DKLVVVDFFSPGCGGCKALHPKICQLAEMN-PD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNAT  123 (218)
Q Consensus        47 ~k~vlV~FyA~WC~~Ck~l~p~~~~la~~~-~~--v~~~~Vd~~~~~~l~~~~~I~~~Pti~lf~~g~~~~~~~~~g~~~  123 (218)
                      ....+..|-+. -+.+......+.++.+.+ .+  +.+--||+.+++.++..++|-.+||++=....-  ...+. |..-
T Consensus        11 ~~l~L~LfV~g-~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~P--~q~l~-Gs~i   86 (105)
T d1t4za_          11 QPLLLQLFVDT-RPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPGS--RQVLS-GIDL   86 (105)
T ss_dssp             CCEEEEEEECS-CHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESSC--CEEEE-SSCH
T ss_pred             CCEEEEEEECC-CCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCEEECCHHHHCCCCC--CEEEC-CHHH
T ss_conf             77599999869-96459999999999998358995689996233397577558877614755248996--42415-7058


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999954
Q 027830          124 IKKFKDALAKH  134 (218)
Q Consensus       124 ~~~l~~~i~~~  134 (218)
                      ...+..|.-+-
T Consensus        87 ~~ql~~w~prw   97 (105)
T d1t4za_          87 TDQLANQLPQW   97 (105)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             77776551676