Citrus Sinensis ID: 027838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKHASF
Secondary Structure (PSIPRED)
ccEEccccccccccccEEEEcccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccEEEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccEEEEEEEEcccHHHHHHHHHHHHccccEEEEEcccccccEcccccccccccccEEEEEEEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEEcccccccHHHHHHHcccHHHHccccHHHHHHHHHHHHcccccccccccccHHcccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEFVLEEgkhlsescsnlilpalsignVGQLAVDLLVSStgaetvgylddqfvlpcvgndayrpsprgdlalplqayessssgltliqqrspVVKGMMVEYAKNLADFAAASGNKHVVVLSALdfgrlqridmssgpqiyylsstsvdgtddyCEQLGWKRlqeynpaqrgwKYLSSlaegdvgdennftfeddleeedyypslpfaalfscfkhasf
Flexible Loop (DISEMBL)
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYessssgltliqqrSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSlaegdvgdeNNFTFEDDLEEEDYYPSLPFAALFSCFKHASF
Low Complexity Region (SEG)
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKHASF
Disordered region (IsUnstruct)
*************SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAY******************************VVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK****
Disordered Region (DISOPRED)
*********HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQ**DMSSGPQIYYLSSTSVD*****C**********************SLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKHASF
Disordered Region (DISEMBL)
**********LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKHASF
Disordered Region (DISPRO)
*EF*LEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKHASF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKHASF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
A7SGU6	244	Proteasome assembly chape	N/A	no	0.669	0.598	0.359	5e-19
Q869S8	269	Proteasome assembly chape	yes	no	0.591	0.479	0.325	3e-16
Q1LXS2	260	Proteasome assembly chape	yes	no	0.688	0.576	0.302	3e-14
Q2NL24	264	Proteasome assembly chape	yes	no	0.678	0.560	0.286	9e-14
Q969U7	264	Proteasome assembly chape	yes	no	0.678	0.560	0.28	4e-13
Q7SYV1	259	Proteasome assembly chape	N/A	no	0.692	0.583	0.287	2e-12
Q9EST4	264	Proteasome assembly chape	yes	no	0.678	0.560	0.273	3e-12
Q5XGC5	261	Proteasome assembly chape	yes	no	0.678	0.567	0.273	3e-11

>sp|A7SGU6|PSMG2_NEMVE Proteasome assembly chaperone 2 OS=Nematostella vectensis GN=psmg2 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 17  NLILPALSIGNVGQLAVDLLVSS--TGAETVGYLDDQFVLPCVGNDAYRP--SPRGDLAL 72
            LILPA+SIGNVGQLA DL +SS  +    +GYL D  +LP VGNDA+      +G+L L
Sbjct: 18  TLILPAVSIGNVGQLATDLTISSLSSSRHLIGYLHDASILPVVGNDAFARLGHEKGELNL 77

Query: 73  PLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRID 132
             + Y+S+   L ++QQR+P+ KG    Y + L  +      K VV+LS++      R+D
Sbjct: 78  SAEVYQSTEKRLVIVQQRAPISKGHYANYCQKLLAWIKRCSFKQVVLLSSI--SATDRVD 135

Query: 133 MS-SGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
               G  + Y++++         ++L W +L++
Sbjct: 136 AQLQGSPLRYMTTSVSQQLSSSFDKLSWVQLEK 168

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.
Nematostella vectensis (taxid: 45351)

>sp|Q869S8|PSMG2_DICDI Proteasome assembly chaperone 2 OS=Dictyostelium discoideum GN=psmG2 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 84/135 (62%), Gaps = 6/135 (4%)

Query: 18  LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRP--SPRGDLALPLQ 75
           LI P+L++GN+GQL +D+L+ S   + +G++ D+ + P +GND +    +  G ++  ++
Sbjct: 22  LIWPSLTLGNIGQLTIDVLICSFEFKRIGFIVDENITPIIGNDCFTTLDNNNGIMSTSIE 81

Query: 76  AYESS-SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
            Y+SS    +TL+QQRSP+V G +  +++NL  +  A   K ++ LS+ +  +  R+D  
Sbjct: 82  VYQSSLFPSITLVQQRSPIVDGRIPNFSENLFKWINAEEIKEILFLSSSNANK--RVDSQ 139

Query: 135 -SGPQIYYLSSTSVD 148
            +G Q+ ++ S +VD
Sbjct: 140 LTGSQVRFIKSDNVD 154

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q1LXS2|PSMG2_DANRE Proteasome assembly chaperone 2 OS=Danio rerio GN=psmg2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
            LILPA+S+GNVGQLAVDLL+S+     VGY     ++P  GN+ Y  S      L+   
Sbjct: 16  TLILPAVSVGNVGQLAVDLLISTLNMPRVGYFHTDCLIPMAGNNPYASSTEDAAQLSTSA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y      L ++Q R+P+++  +  + K +  +  +SG    V+LS+    +     + 
Sbjct: 76  EVYSHRDLKLAVLQIRAPIIQTKVKSFRKLMISWMKSSGFLRTVLLSSAHAYQRDDQQLH 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYN 166
             P  Y LS +         E+LGW+ +++ +
Sbjct: 136 GTPLRYMLSPSLEKEERQRFEELGWREMEKIS 167

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Danio rerio (taxid: 7955)

>sp|Q2NL24|PSMG2_BOVIN Proteasome assembly chaperone 2 OS=Bos taurus GN=PSMG2 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++  
Sbjct: 16  TLLMPAVSVGNVGQLAIDLIISTLNMHKIGYFYTDCLVPMVGNNPYATAEENSAELSINA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L  +Q RS  +K     + + L  +   SG   VVVLS+        + + 
Sbjct: 76  EVYALPSKKLVALQLRSIFIKYKSKSFCEKLLSWVKCSGCAKVVVLSSSHSYHRNDLQLR 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
           S P  Y L+ +      +  + L W+ +++
Sbjct: 136 STPFRYLLTPSMQKSVQNKIQSLNWEEMEK 165

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. The PSMG1-PSMG2 heterodimer binds to the PSMA5 and PSMA7 proteasome subunits, promotes assembly of the proteasome alpha subunits into the heteroheptameric alpha ring and prevents alpha ring dimerization.

Bos taurus (taxid: 9913)

>sp|Q969U7|PSMG2_HUMAN Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSP--RGDLALPL 74
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++  
Sbjct: 16  TLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L  +Q RS  +K     + + L  +  +SG   V+VLS+    +   + + 
Sbjct: 76  EVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLR 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
           S P  Y L+ +      +  + L W+ +++
Sbjct: 136 STPFRYLLTPSMQKSVQNKIKSLNWEEMEK 165

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. The PSMG1-PSMG2 heterodimer binds to the PSMA5 and PSMA7 proteasome subunits, promotes assembly of the proteasome alpha subunits into the heteroheptameric alpha ring and prevents alpha ring dimerization.

Homo sapiens (taxid: 9606)

>sp|Q7SYV1|PSMG2_XENLA Proteasome assembly chaperone 2 OS=Xenopus laevis GN=psmg2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 14  SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLA 71
           S S L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VGN+ Y  +     +L 
Sbjct: 13  SVSTLLLPAISVGNVGQLAIDLIISTLNIPKVGYFYTDCLVPMVGNNPYETNEENAKELC 72

Query: 72  LPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRI 131
              + Y   S  L ++Q RS V+K     + + L  +        V+ LS+         
Sbjct: 73  TNAEVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVIFLSSCHAYHRDDK 132

Query: 132 DMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
            +   P  Y ++        D   +L WK +++
Sbjct: 133 QLFGTPFRYLVTPALQKSVADVLSELEWKEMEK 165

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Xenopus laevis (taxid: 8355)

>sp|Q9EST4|PSMG2_MOUSE Proteasome assembly chaperone 2 OS=Mus musculus GN=Psmg2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y        +L++  
Sbjct: 16  TLLMPAVSVGNVGQLAIDLIISTLNMCKIGYFYTDCLVPMVGNNPYATEEENSNELSINT 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L ++Q RS  +K     + + L  +  +SG   ++VLS+          + 
Sbjct: 76  EVYSLPSKKLVVLQLRSIFIKYKSKSFCEKLLAWVESSGCARIIVLSSSHSYHRNDAQLR 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
           S P  Y L+        +  + L W  +++
Sbjct: 136 STPFRYLLTPCLQKSVQNKIKSLNWLEMEK 165

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. The PSMG1-PSMG2 heterodimer binds to the PSMA5 and PSMA7 proteasome subunits, promotes assembly of the proteasome alpha subunits into the heteroheptameric alpha ring and prevents alpha ring dimerization.

Mus musculus (taxid: 10090)

>sp|Q5XGC5|PSMG2_XENTR Proteasome assembly chaperone 2 OS=Xenopus tropicalis GN=psmg2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 2/150 (1%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPL 74
            L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VG++ Y        +L    
Sbjct: 16  TLLLPAISVGNVGQLAIDLIISTLKIPKVGYFYTDCLVPMVGSNPYETDEENAKELCTNA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L ++Q RS V+K     + + L  +        V++LS+          + 
Sbjct: 76  EVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVILLSSCHAYHRDDTQLF 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
             P  Y ++        D  ++L WK +++
Sbjct: 136 GTPFRYLVTPALQKSVADVLKELEWKEMEK 165

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
224077776	280	predicted protein [Populus trichocarpa]	0.981	0.764	0.728	4e-88
356538845	280	PREDICTED: proteasome assembly chaperone	0.981	0.764	0.724	1e-85
255637497	280	unknown [Glycine max]	0.981	0.764	0.719	5e-85
356545347	280	PREDICTED: proteasome assembly chaperone	0.981	0.764	0.710	8e-85
217072912	246	unknown [Medicago truncatula]	0.981	0.869	0.686	1e-84
147820884	282	hypothetical protein VITISV_023239 [Viti	0.981	0.758	0.725	1e-84
225428608	282	PREDICTED: proteasome assembly chaperone	0.981	0.758	0.720	1e-83
255556175	281	conserved hypothetical protein [Ricinus	0.981	0.761	0.742	1e-80
297834806	281	hypothetical protein ARALYDRAFT_479410 [	0.981	0.761	0.677	7e-79
388490722	280	unknown [Lotus japonicus]	0.981	0.764	0.696	1e-78

>gi|224077776|ref|XP_002305403.1| predicted protein [Populus trichocarpa] gi|222848367|gb|EEE85914.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/214 (72%), Positives = 186/214 (86%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGK L++  S LILPALSIGNVGQLAVDLLVSST AE +GYLDD ++LPCVGND
Sbjct: 1   MEFIIEEGKCLNKETSTLILPALSIGNVGQLAVDLLVSSTRAERIGYLDDPYILPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P+P G+LALPL+AY+S ++G+ L+QQRSPVVKGMMVE+A+NLADFA A+G  HV+VL
Sbjct: 61  AYGPTPCGELALPLEAYDSRNNGVALVQQRSPVVKGMMVEFARNLADFAVATGMNHVLVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+L+F RLQ+ID SSG QI+YLSST+ DGTDD CE+LGWK+ QEYNP QR WKYLSSLAE
Sbjct: 121 SSLEFMRLQKIDTSSGMQIFYLSSTNTDGTDDCCERLGWKKWQEYNPDQRSWKYLSSLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
           G+   E+N  FED+ E+EDYYPSLPFAALFSCFK
Sbjct: 181 GNARQEDNLPFEDEPEDEDYYPSLPFAALFSCFK 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538845|ref|XP_003537911.1| PREDICTED: proteasome assembly chaperone 2-like [Glycine max]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/214 (72%), Positives = 182/214 (85%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL E CS LILPALSIGNVGQL  DLL+SS G+E VGYLDD  VLPCVGND
Sbjct: 1   MEFVPEEGKHLHEDCSTLILPALSIGNVGQLVADLLISSMGSERVGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPVVKGMM+E+AKN+ADF A SG KH+VVL
Sbjct: 61  AYGPFPQGDLALPLEAYDSPSNALTIIQQRSPVVKGMMIEFAKNMADFLAGSGKKHIVVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QIYYLSS++ +GTD+ CEQLGWK+LQEY+P+Q  WKYLS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIYYLSSSNSNGTDENCEQLGWKKLQEYDPSQMHWKYLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
           G+V  E+  + ED+LEEE+YY SLPFAALFS  K
Sbjct: 181 GNVTVEDITSVEDELEEENYYASLPFAALFSFLK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637497|gb|ACU19075.1| unknown [Glycine max]

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 154/214 (71%), Positives = 181/214 (84%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL E CS LILP LSIGNVGQL  DLL+SS G+E VGYLDD  VLPCVGND
Sbjct: 1   MEFVPEEGKHLHEDCSTLILPTLSIGNVGQLVADLLISSMGSERVGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPVVKGMM+E+AKN+ADF A SG KH+VVL
Sbjct: 61  AYGPFPQGDLALPLEAYDSPSNALTIIQQRSPVVKGMMIEFAKNMADFLAGSGKKHIVVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QIYYLSS++ +GTD+ CEQLGWK+LQEY+P+Q  WKYLS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIYYLSSSNSNGTDENCEQLGWKKLQEYDPSQMHWKYLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
           G+V  E+  + ED+LEEE+YY SLPFAALFS  K
Sbjct: 181 GNVTVEDITSVEDELEEENYYASLPFAALFSFLK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545347|ref|XP_003541105.1| PREDICTED: proteasome assembly chaperone 2-like isoform 1 [Glycine max]

 Score =  318 bits (816), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 152/214 (71%), Positives = 182/214 (85%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL E CS LILPALSIGNVGQL  DLL+SS G+E VGYLDD  VLPCVGND
Sbjct: 1   MEFVPEEGKHLHEDCSTLILPALSIGNVGQLVADLLISSMGSERVGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPVVKGMM+E+AKN+ADF A SG KH++VL
Sbjct: 61  AYGPFPQGDLALPLEAYDSLSNALTIIQQRSPVVKGMMIEFAKNMADFLAGSGKKHIIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QI+YLSS + +GTD+ CEQLGWK+LQEY+P+Q+ WK+LS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIHYLSSANSNGTDENCEQLGWKKLQEYDPSQKHWKHLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
           G+V  E+  + ED+LEEE+YY SLPFAALFS  K
Sbjct: 181 GNVTLEDITSVEDELEEENYYASLPFAALFSFLK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072912|gb|ACJ84816.1| unknown [Medicago truncatula]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/214 (68%), Positives = 181/214 (84%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           M+F+ EEGKHL E CS LILPA+SIGNVGQL  DLLVSS G+E VGYLDD +VLPCVGND
Sbjct: 1   MKFIPEEGKHLHEDCSTLILPAVSIGNVGQLTADLLVSSMGSEKVGYLDDPYVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+  S+GLT+IQQRSPV+KGMM+E+AKN+ADF A SG KH+++L
Sbjct: 61  AYGPFPQGDLALPLEAYDPPSNGLTVIQQRSPVIKGMMLEFAKNMADFIAGSGKKHIIIL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QIYYLSS + +G D+ CEQLGWK+LQEY+P+Q+ WKYL+ LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIYYLSSANSNGADENCEQLGWKKLQEYDPSQKHWKYLNDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
           G+   E+  + ED+LEEE+YY SLPFAALFS  K
Sbjct: 181 GNATPEDTTSIEDELEEENYYASLPFAALFSFLK 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820884|emb|CAN60895.1| hypothetical protein VITISV_023239 [Vitis vinifera]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/215 (72%), Positives = 185/215 (86%), Gaps = 1/215 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGKHL+  CS L+LPALSIGNVGQLAVDLL+SST  E +GYLDD +VLPCVGND
Sbjct: 1   MEFIVEEGKHLNNDCSTLVLPALSIGNVGQLAVDLLISSTRTERIGYLDDPYVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P PRG++ALPL+AY+SS + LTL+QQRSPV+KGMMVE+AKNLADFAA SG KHV+VL
Sbjct: 61  AYGPIPRGEVALPLEAYDSSLNKLTLVQQRSPVLKGMMVEFAKNLADFAADSGKKHVIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ QRIDMSSG QIYY+SS ++DGTDD CE+LGWK+L EYNPAQR WKYLS+LA 
Sbjct: 121 SSLDFGQWQRIDMSSGSQIYYISSANMDGTDDDCEKLGWKKLHEYNPAQRRWKYLSTLAA 180

Query: 181 GDVGDENNF-TFEDDLEEEDYYPSLPFAALFSCFK 214
           G+   E+     ++  +EEDYYPSLPFAALFSCFK
Sbjct: 181 GNAMQEDGLPXEDELEDEEDYYPSLPFAALFSCFK 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428608|ref|XP_002284741.1| PREDICTED: proteasome assembly chaperone 2 [Vitis vinifera] gi|297741394|emb|CBI32525.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 184/215 (85%), Gaps = 1/215 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGKHL+  CS L+LPALSIGNVGQLAVDLL+SST AE +GYLDD +VLPCVGND
Sbjct: 1   MEFIVEEGKHLNNDCSTLVLPALSIGNVGQLAVDLLISSTRAERIGYLDDPYVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P PRG++ALPL+AY+SS + LTL+QQRSPV+KGMMVE+AKNLA FAA SG KHV+VL
Sbjct: 61  AYGPIPRGEVALPLEAYDSSLNKLTLVQQRSPVLKGMMVEFAKNLAYFAADSGKKHVIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ QRIDMSSG QIYY+SS ++DG DD CE+LGWK+L EYNPAQR WKYLS+LA 
Sbjct: 121 SSLDFGQWQRIDMSSGSQIYYISSANMDGADDDCEKLGWKKLHEYNPAQRRWKYLSTLAA 180

Query: 181 GDVGDENNFTF-EDDLEEEDYYPSLPFAALFSCFK 214
           G+   E+   F ++  +EEDYYPSLPFAAL SCFK
Sbjct: 181 GNAMQEDGLAFEDELEDEEDYYPSLPFAALLSCFK 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556175|ref|XP_002519122.1| conserved hypothetical protein [Ricinus communis] gi|223541785|gb|EEF43333.1| conserved hypothetical protein [Ricinus communis]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 182/214 (85%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGK L + CS L+LPALSIGNVGQLAVDLLVSS  AE +GYLDD  VLPCVGND
Sbjct: 1   MEFIVEEGKQLHKECSTLVLPALSIGNVGQLAVDLLVSSQKAERIGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P G+LAL L+AY+S ++ LTL+QQRSPVVKG MVE+A NLA+FAAASG KH ++L
Sbjct: 61  AYGPIPCGNLALSLEAYDSPANALTLVQQRSPVVKGKMVEFANNLAEFAAASGKKHAILL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S LDFGR QRIDMSSG Q YYLSST+ DGTDD CE+LGWKRLQEYNPAQR WKYLS+LAE
Sbjct: 121 SGLDFGRWQRIDMSSGLQTYYLSSTNSDGTDDDCERLGWKRLQEYNPAQRSWKYLSTLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
           G+   E+   +ED+LEEEDYYPSLPFAAL+SCFK
Sbjct: 181 GNPMPEDRLPYEDELEEEDYYPSLPFAALYSCFK 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834806|ref|XP_002885285.1| hypothetical protein ARALYDRAFT_479410 [Arabidopsis lyrata subsp. lyrata] gi|297331125|gb|EFH61544.1| hypothetical protein ARALYDRAFT_479410 [Arabidopsis lyrata subsp. lyrata]

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/214 (67%), Positives = 174/214 (81%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGK ++E CS L+LPALSIGNVGQLAVDLLVSSTG E VGYLDD ++LPCVGND
Sbjct: 1   MEFVAEEGKLVNEDCSTLVLPALSIGNVGQLAVDLLVSSTGTERVGYLDDPYLLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P GD+ALPL+ YESSS   TL QQRSPV KGMM+++A+N+ADFAA+SG KHV+VL
Sbjct: 61  AYGPLPCGDIALPLEVYESSSIATTLAQQRSPVAKGMMIKFAENIADFAASSGKKHVIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDF RL  +DMS GPQ+YYLS+   DG DD+CE+LG+ RL+EY+   R WKYLSS+ E
Sbjct: 121 SSLDFQRLHNLDMSRGPQVYYLSNAESDGRDDHCERLGFGRLREYDSEGRCWKYLSSVFE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
            +  +E  F  ED+LE+ DYYPSLPFAALFS +K
Sbjct: 181 KNSEEELTFPSEDELEDIDYYPSLPFAALFSAYK 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490722|gb|AFK33427.1| unknown [Lotus japonicus]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 149/214 (69%), Positives = 181/214 (84%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL+++CS LILPALSIGNVGQLA DLLVSS   E VGYLDD  VLPCVGND
Sbjct: 1   MEFVAEEGKHLNDNCSTLILPALSIGNVGQLAADLLVSSMATERVGYLDDPHVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPV+KGMM+++AKN+ADF A SG KH+V+L
Sbjct: 61  AYGPVPQGDLALPLEAYDSPSNALTIIQQRSPVIKGMMLDFAKNMADFLAGSGKKHIVLL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QIYYLSS + +GTD+ CE LGWK+LQEY+P+Q+ WK+LS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIYYLSSANSNGTDENCESLGWKKLQEYDPSQKHWKFLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
           G+   E+  + ED+LEEEDYY SLPFAAL+S  K
Sbjct: 181 GNATREDIISEEDELEEEDYYASLPFAALYSFLK 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2085919	281	AT3G18940 "AT3G18940" [Arabido	0.981	0.761	0.668	1.1e-73
DICTYBASE|DDB_G0274447	269	psmG2 "proteasome assembly cha	0.591	0.479	0.325	3.2e-17
ZFIN|ZDB-GENE-040426-1972	260	psmg2 "proteasome (prosome, ma	0.665	0.557	0.324	2.3e-16
UNIPROTKB|E1BZ56	264	PSMG2 "Uncharacterized protein	0.733	0.606	0.307	9.8e-16
UNIPROTKB|Q2NL24	264	PSMG2 "Proteasome assembly cha	0.683	0.564	0.289	2.6e-15
UNIPROTKB|Q969U7	264	PSMG2 "Proteasome assembly cha	0.674	0.556	0.281	8.8e-15
CGD|CAL0006349	264	orf19.2278 [Candida albicans (	0.811	0.670	0.278	3.8e-14
UNIPROTKB|E2R7V2	264	PSMG2 "Uncharacterized protein	0.674	0.556	0.275	3.8e-14
UNIPROTKB|Q59Z84	264	CaO19.2278 "Putative uncharact	0.811	0.670	0.278	3.8e-14
UNIPROTKB|Q7SYV1	259	psmg2 "Proteasome assembly cha	0.692	0.583	0.287	7.9e-14

TAIR|locus:2085919 AT3G18940 "AT3G18940" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 143/214 (66%), Positives = 173/214 (80%)

Query:     1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
             MEFV+EEGK ++E CS L+LPALSIGNVGQLAVDLLVSSTGAE VGYLDD  +LPCVGND
Sbjct:     1 MEFVVEEGKLVNEDCSTLVLPALSIGNVGQLAVDLLVSSTGAERVGYLDDPNLLPCVGND 60

Query:    61 AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
             AY P P G++ALPL+ YESSS   TL QQRSPV KGMM+++A+N+A+FAA+SG KH++VL
Sbjct:    61 AYGPLPCGEIALPLEVYESSSIATTLAQQRSPVAKGMMIKFAENIANFAASSGKKHIIVL 120

Query:   121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
             S+LDF RL  +DMS GPQ+YYLS+   DG DD+CE+LG+ RL EY+   R WKYLSS+ E
Sbjct:   121 SSLDFQRLHNLDMSRGPQVYYLSNAESDGRDDHCERLGFGRLHEYDSEGRCWKYLSSVFE 180

Query:   181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFK 214
              +  +E     ED+LE+ DYYPSLPFAALFS FK
Sbjct:   181 KNSVEELALPSEDELEDIDYYPSLPFAALFSAFK 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

DICTYBASE|DDB_G0274447 psmG2 "proteasome assembly chaperone 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 44/135 (32%), Positives = 84/135 (62%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRP--SPRGDLALPLQ 75
             LI P+L++GN+GQL +D+L+ S   + +G++ D+ + P +GND +    +  G ++  ++
Sbjct:    22 LIWPSLTLGNIGQLTIDVLICSFEFKRIGFIVDENITPIIGNDCFTTLDNNNGIMSTSIE 81

Query:    76 AYESSS-SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
              Y+SS    +TL+QQRSP+V G +  +++NL  +  A   K ++ LS+ +  +  R+D  
Sbjct:    82 VYQSSLFPSITLVQQRSPIVDGRIPNFSENLFKWINAEEIKEILFLSSSNANK--RVDSQ 139

Query:   135 -SGPQIYYLSSTSVD 148
              +G Q+ ++ S +VD
Sbjct:   140 LTGSQVRFIKSDNVD 154

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1972 psmg2 "proteasome (prosome, macropain) assembly chaperone 2" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 49/151 (32%), Positives = 81/151 (53%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPLQ 75
             LILPA+S+GNVGQLAVDLL+S+     VGY     ++P  GN+ Y  S      L+   +
Sbjct:    17 LILPAVSVGNVGQLAVDLLISTLNMPRVGYFHTDCLIPMAGNNPYASSTEDAAQLSTSAE 76

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS- 134
              Y      L ++Q R+P+++  +  + K +  +  +SG    V+LS+      QR D   
Sbjct:    77 VYSHRDLKLAVLQIRAPIIQTKVKSFRKLMISWMKSSGFLRTVLLSSAH--AYQRDDQQL 134

Query:   135 SGPQIYYLSSTSVDGTD-DYCEQLGWKRLQE 164
              G  + Y+ S S++  +    E+LGW+ +++
Sbjct:   135 HGTPLRYMLSPSLEKEERQRFEELGWREMEK 165

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0043248 "proteasome assembly" evidence=ISS

UNIPROTKB|E1BZ56 PSMG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 51/166 (30%), Positives = 87/166 (52%)

Query:     3 FVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAY 62
             FV  +G  L      L++PA+S+GNVGQLAVDL++S+     VGY     ++P VGN+ Y
Sbjct:     2 FVPCDGGGLDFEGFTLLMPAVSVGNVGQLAVDLVISTLRMPKVGYFYTDCLVPMVGNNPY 61

Query:    63 RPSPRGDLALPLQA--YESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
               +    + L + A  Y   S  L ++Q RSP +K     + + L  +  +S    V++L
Sbjct:    62 ATTKENSMELSINAEVYSLPSKKLVVLQIRSPFIKNKYRPFCQTLLSWVESSKCARVILL 121

Query:   121 SALDFGRLQRIDMSS-GPQIYYLSSTSVD-GTDDYCEQLGWKRLQE 164
             S+      QR D    G  + YL + +++   + + ++L WK +++
Sbjct:   122 SSSH--AYQRDDEQLLGTPLRYLLTPALEKAVEGHIQELKWKEMEK 165

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

UNIPROTKB|Q2NL24 PSMG2 "Proteasome assembly chaperone 2" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 44/152 (28%), Positives = 78/152 (51%)

Query:    15 CSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLAL 72
             C+ L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++
Sbjct:    15 CT-LLMPAVSVGNVGQLAIDLIISTLNMHKIGYFYTDCLVPMVGNNPYATAEENSAELSI 73

Query:    73 PLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRID 132
               + Y   S  L  +Q RS  +K     + + L  +   SG   VVVLS+        + 
Sbjct:    74 NAEVYALPSKKLVALQLRSIFIKYKSKSFCEKLLSWVKCSGCAKVVVLSSSHSYHRNDLQ 133

Query:   133 MSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
             + S P  Y L+ +      +  + L W+ +++
Sbjct:   134 LRSTPFRYLLTPSMQKSVQNKIQSLNWEEMEK 165

GO:0005634 "nucleus" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q969U7 PSMG2 "Proteasome assembly chaperone 2" [Homo sapiens (taxid:9606)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 42/149 (28%), Positives = 78/149 (52%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQ 75
             L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++  +
Sbjct:    17 LLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINAE 76

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSS 135
              Y   S  L  +Q RS  +K     + + L  +  +SG   V+VLS+    +   + + S
Sbjct:    77 VYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLRS 136

Query:   136 GPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
              P  Y L+ +      +  + L W+ +++
Sbjct:   137 TPFRYLLTPSMQKSVQNKIKSLNWEEMEK 165

GO:0006915 "apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

CGD|CAL0006349 orf19.2278 [Candida albicans (taxid:5476)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 52/187 (27%), Positives = 92/187 (49%)

Query:    16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQ 75
             S LI+P++SIGNV QLA+DLL+ +   E V  LDD ++ P      Y   P+  ++   +
Sbjct:    20 STLIIPSVSIGNVPQLAIDLLIHTHNLEKVDSLDDLYLYPFASPVDYVTEPKKGISHAAE 79

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLA-DFAAASGNKHVVVLSALDFGRLQRIDMS 134
              + +    LTLIQQRSP++      Y  N+   F  +     +++L + D G ++ I  S
Sbjct:    80 VFHNKDLNLTLIQQRSPILPYNTKLYVTNIIIPFITSHEFDRILILDSSDAGLVEHIS-S 138

Query:   135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQ---RGWKYLSSLAEG-DVGDENNFT 190
              G ++Y    T  D   +  E +   + +    A    R  KY+  L E  ++  ++N +
Sbjct:   139 GGIELY----TKEDLLSESLESMKLSKEESTTAAHEDNRNSKYVRCLLENFNLSTDSNES 194

Query:   191 FEDDLEE 197
               ++ ++
Sbjct:   195 HSNEFKD 201

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

UNIPROTKB|E2R7V2 PSMG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 41/149 (27%), Positives = 74/149 (49%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQ 75
             L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L +  +
Sbjct:    17 LLMPAVSVGNVGQLAIDLIISTLNMRKIGYFYTDCLVPMVGNNPYATAEENSTELCINAE 76

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSS 135
              Y   S  L  +Q RS  +K     + + L  +  +S    V+VLS+        + + S
Sbjct:    77 VYSLPSKKLVALQLRSIFIKYKSKPFCEKLLSWVKSSNCAKVIVLSSSHSYHRNDLQLRS 136

Query:   136 GPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
              P  Y L+        +  + L W+ +++
Sbjct:   137 TPFRYLLTPIVQKSVQNRIQSLNWEEMEK 165

GO:0043248 "proteasome assembly" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q59Z84 CaO19.2278 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 52/187 (27%), Positives = 92/187 (49%)

Query:    16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQ 75
             S LI+P++SIGNV QLA+DLL+ +   E V  LDD ++ P      Y   P+  ++   +
Sbjct:    20 STLIIPSVSIGNVPQLAIDLLIHTHNLEKVDSLDDLYLYPFASPVDYVTEPKKGISHAAE 79

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLA-DFAAASGNKHVVVLSALDFGRLQRIDMS 134
              + +    LTLIQQRSP++      Y  N+   F  +     +++L + D G ++ I  S
Sbjct:    80 VFHNKDLNLTLIQQRSPILPYNTKLYVTNIIIPFITSHEFDRILILDSSDAGLVEHIS-S 138

Query:   135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQ---RGWKYLSSLAEG-DVGDENNFT 190
              G ++Y    T  D   +  E +   + +    A    R  KY+  L E  ++  ++N +
Sbjct:   139 GGIELY----TKEDLLSESLESMKLSKEESTTAAHEDNRNSKYVRCLLENFNLSTDSNES 194

Query:   191 FEDDLEE 197
               ++ ++
Sbjct:   195 HSNEFKD 201

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q7SYV1 psmg2 "Proteasome assembly chaperone 2" [Xenopus laevis (taxid:8355)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 44/153 (28%), Positives = 72/153 (47%)

Query:    14 SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLA 71
             S S L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VGN+ Y  +     +L 
Sbjct:    13 SVSTLLLPAISVGNVGQLAIDLIISTLNIPKVGYFYTDCLVPMVGNNPYETNEENAKELC 72

Query:    72 LPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRI 131
                + Y   S  L ++Q RS V+K     + + L  +        V+ LS+         
Sbjct:    73 TNAEVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVIFLSSCHAYHRDDK 132

Query:   132 DMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
              +   P  Y ++        D   +L WK +++
Sbjct:   133 QLFGTPFRYLVTPALQKSVADVLSELEWKEMEK 165

GO:0005634 "nucleus" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
pfam09754	220	pfam09754, PAC2, PAC2 family	2e-23
COG1938	244	COG1938, COG1938, Archaeal enzymes of ATP-grasp su	6e-06

>gnl|CDD|220382 pfam09754, PAC2, PAC2 family

 Score = 93.2 bits (232), Expect = 2e-23
 Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 18  LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGD--LALPLQ 75
           LI      GNVGQLAVD L+ S  AE VG +D   + P  G         G   L  PL+
Sbjct: 1   LIEGFPDAGNVGQLAVDHLIESLDAEKVGEIDSDELFPYRGRRPQVTVDEGGKILWPPLE 60

Query: 76  AYESSSSG-LTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFG 126
            Y     G L ++Q RSP   G   E+A+ + D+A   G   V+ L  L  G
Sbjct: 61  LYYLKDGGDLLVLQGRSPEPPGRWYEFAEAILDWAEELGVSEVITLGGLPAG 112

This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits. Length = 220

>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily [General function prediction only]

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 25  IGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGL 84
           IG VG +A   L+     E +GY++ + + P       R  P      P + Y  SS G+
Sbjct: 26  IGLVGVIAGKHLIEELNMEEIGYIESKHIPPVAVVVEGRALP------PFRIYA-SSDGV 78

Query: 85  TLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSS 144
             +    P+   ++ E +  + ++A  +G + V+ L  +             P +Y +++
Sbjct: 79  LALVSDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPAR-----LREEKPSVYGVAT 133

Query: 145 T 145
           +
Sbjct: 134 S 134

Length = 244

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG3112	262	consensus Uncharacterized conserved protein [Funct	100.0
PF09754	219	PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (	99.96
COG1938	244	Archaeal enzymes of ATP-grasp superfamily [General	99.95
TIGR00161	238	conserved hypothetical protein TIGR00161. This ort	99.93
COG2047	258	Uncharacterized protein (ATP-grasp superfamily) [G	99.54
TIGR00162	188	conserved hypothetical protein TIGR00162. This ort	98.21

>KOG3112 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-47  Score=325.13  Aligned_cols=209  Identities=28%  Similarity=0.408  Sum_probs=189.4

Q ss_pred             CceeecCCcccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeC
Q 027838            1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESS   80 (218)
Q Consensus         1 m~f~~~~~~~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~   80 (218)
                      |+|...+++.+|..++|+|+|+.++||||||||||||.+.+|+||||+++++|.|+|||++|.+.+.+.++.|+|||.+.
T Consensus         1 m~f~~~~~~~~~~~~~t~i~p~~~vgn~~qla~dlli~s~~~~rIGy~~~p~LiP~vGn~aY~~~p~~E~~~~~EvYe~~   80 (262)
T KOG3112|consen    1 MLFLKDKRTTLDVAEHTVIIPSICVGNAAQLACDLLIASKELRRIGYITHPALIPVVGNSAYQHEPKEEKVSSCEVYEGT   80 (262)
T ss_pred             CceecccCeeeccccceeEecceeeCcHHHHHHHHhhccccchhcccccCCceeeeecCCcCCCCCCcceeeceeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCc
Q 027838           81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWK  160 (218)
Q Consensus        81 ~~~i~vlqqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~  160 (218)
                      +.+++++|+|+|.+++++..|+++|++|++++|.++||+|||++...|++.+++.+|++|+++++.++..++++++||| 
T Consensus        81 s~kl~~~Q~RSp~vk~~~~~F~e~l~~~~kSSG~~~VIVLSss~~~~~~~L~~srgP~~Y~lsnae~~~~~~h~~~Lg~-  159 (262)
T KOG3112|consen   81 SDKLLVVQFRSPWVKRHTAHFQEELVELLKSSGARRVIVLSSSFGFEKRVLEESRGPWAYRLSNAEENFKEAHAAQLGN-  159 (262)
T ss_pred             chhhHHHHhhhHHHHhhhhHHHHHHHHHHHhcCCceEEEEecchHHHhhhhhhccCCeeEEcCchhhhhHHHHHHHhCc-
Confidence            9999999999999999999999999999999999999999999999999999999999999998888888899999999 


Q ss_pred             cccccCccccchhhhhhhhcCCCCCCCCCCCcccccccccCCCCcHHHHHHhhhh
Q 027838          161 RLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKH  215 (218)
Q Consensus       161 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~a~l~~~~~~  215 (218)
                        |+++ ..|.|+|++.-++..++  -+.+++.-||+.-+--.+||++||.+|.|
T Consensus       160 --eE~d-egRcwke~~~Svee~ai--pggg~~~~Lf~af~~~~v~m~~Ll~y~sE  209 (262)
T KOG3112|consen  160 --EELD-EGRCWKEHKGSVEEDAI--PGGGNALQLFKAFDEQKVPMMLLLRYLSE  209 (262)
T ss_pred             --hhhh-hccchhhhCCcceeeec--CCCccHHHHHHHHHhcCCchhhHHHHhhc
Confidence              4444 77899999953333333  22457777777777777777777777765

>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes

Probab=99.96  E-value=6e-29  Score=211.46  Aligned_cols=138  Identities=36%  Similarity=0.513  Sum_probs=111.5

Q ss_pred             EEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCC--CcceeeEeeeeCCCcEEEEEEccCCCc
Q 027838           18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQAYESSSSGLTLIQQRSPVVK   95 (218)
Q Consensus        18 LI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g--~l~tp~EvY~s~~~~i~vlqqRsPi~~   95 (218)
                      ||+|+||+|||||||+||||++|++++||++|++.+.|++|++++...++|  .+.+|+|+|++++++++++|+|+|+++
T Consensus         1 li~g~~~~G~Vg~la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~~~~~~i~vl~~~~p~~~   80 (219)
T PF09754_consen    1 LIEGFPGIGNVGQLAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYYSEDSKILVLQGRSPIPP   80 (219)
T ss_dssp             EEESSTBGGGHHHHHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEEEECTTEEEEEESSE--S
T ss_pred             CcCCccchhhHHHHHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEEECCCCEEEEEecCCCCc
Confidence            799999999999999999999999999999999888888888877555556  899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCccc
Q 027838           96 GMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL  162 (218)
Q Consensus        96 ~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l  162 (218)
                      +..++|+++|++|+++.|+++||+|+|+++..+++     .|.+|+.++  +++..+.++..+....
T Consensus        81 ~~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~  140 (219)
T PF09754_consen   81 GRWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPHE-----RPPVYRVAT--SEELLDKLEEAGIELS  140 (219)
T ss_dssp             CGHHHHHHHHHHHHHHTTECEEEEEEEEEESS-TT-----S-EEEEEES--SGGGHCHSHHTT-EE-
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCcc-----ccceEEEEc--CHHHhhhhcccccccc
Confidence            99999999999999999999999999999998762     347787775  3334456665444333

Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.

>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]

Probab=99.95  E-value=2.1e-27  Score=207.08  Aligned_cols=154  Identities=20%  Similarity=0.309  Sum_probs=135.4

Q ss_pred             CcccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEE
Q 027838            8 GKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLI   87 (218)
Q Consensus         8 ~~~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vl   87 (218)
                      ....+.++++||+++|++|+||.||++|||.+|+|+.||+++++++||++.   +   .+|.+.+|+|+|++ +++++++
T Consensus         9 ~~~~~~e~~ilI~g~PgiGlVG~Ia~~~li~~l~m~~iG~i~s~~~PPv~v---v---~~G~~~~P~RIY~~-~~~~~~~   81 (244)
T COG1938           9 LEKVDYENPILIEGFPGIGLVGVIAGKHLIEELNMEEIGYIESKHIPPVAV---V---VEGRALPPFRIYAS-SDGVLAL   81 (244)
T ss_pred             eccccccCCEEEEeCCCCchhhHHHHHHHHHHcCCeEEEEEEecCCCCEEE---E---eCCcccCceeEEec-CCCEEEE
Confidence            345667999999999999999999999999999999999999999999993   3   36799999999999 8999999


Q ss_pred             EEccCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCccccccCc
Q 027838           88 QQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNP  167 (218)
Q Consensus        88 qqRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~~~~~  167 (218)
                      ++++||++...++|+++|++|++++|+++||+++|+++..+++     .+.+|++++  ++...++|+++|.+.++.-..
T Consensus        82 ~~dv~I~p~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e-----~~~v~~va~--~~~~~~~l~~~~~~~~~~G~I  154 (244)
T COG1938          82 VSDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREE-----KPSVYGVAT--SEEKLEKLKDLGAEPLEEGTI  154 (244)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccC-----CCceEEEec--chhhhhHHhhcCCCcccccee
Confidence            9999999999999999999999999999999999998877654     788999986  555678999999999888655


Q ss_pred             cccchhhh
Q 027838          168 AQRGWKYL  175 (218)
Q Consensus       168 ~~~~~~~l  175 (218)
                      .+-....|
T Consensus       155 ~G~~g~ll  162 (244)
T COG1938         155 VGPSGALL  162 (244)
T ss_pred             ecccHHHH
Confidence            44333333

>TIGR00161 conserved hypothetical protein TIGR00161

Probab=99.93  E-value=1.7e-25  Score=195.17  Aligned_cols=139  Identities=12%  Similarity=0.210  Sum_probs=119.2

Q ss_pred             cccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEE
Q 027838            9 KHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQ   88 (218)
Q Consensus         9 ~~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~tp~EvY~s~~~~i~vlq   88 (218)
                      +.+++++++||.|+||+||||+||+||||++|++++||+|+++++||++..      ++|...+|+|+|.+++. ++++|
T Consensus        10 ~~~~~~~~ilI~gfpg~G~VG~iA~~~Li~~l~~~~ig~I~s~~~pP~v~v------~~g~~~~p~riY~~~~~-~vv~~   82 (238)
T TIGR00161        10 YKEDVENPIVIEGFPGVGLVGNIAGWLLIEDLKLREIGYIDSKYFPPLAVL------YKGVAIPPVRIYEGKDG-IVLFL   82 (238)
T ss_pred             cCccCCCCEEEEeCCCCChHHHHHHHHHHHHcCCeEEEEEecCCCCCeEEe------cCCeecCceEEEecCCc-EEEEE
Confidence            456899999999999999999999999999999999999999999999963      25789999999997543 68999


Q ss_pred             EccCCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCccccc
Q 027838           89 QRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE  164 (218)
Q Consensus        89 qRsPi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~~  164 (218)
                      +|+|+.+...++|+++|++|+++.|+++||+|+|+.+..+       .+.+|+++|  ++...+.+++. ...++.
T Consensus        83 ~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~-------~~~v~~~at--~~~~~~~l~~~-~~~~~~  148 (238)
T TIGR00161        83 SDFIIPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVREK-------SQPVFGAAN--SQELIERLKDL-IEIFPF  148 (238)
T ss_pred             ecccCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCCC-------CCcEEEEEC--CHHHHHHHHHh-cCcCCC
Confidence            9999999999999999999999999999999999998642       367999886  44455566654 344443

This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.

>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]

Probab=99.54  E-value=6.4e-14  Score=120.87  Aligned_cols=194  Identities=19%  Similarity=0.094  Sum_probs=133.0

Q ss_pred             ccCCCCCEEEEcccCccchHHHHHHHHHhccCCeEEEEEecCCcccccccCCCCCCCCCCcc-eeeEeeeeCC----CcE
Q 027838           10 HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLA-LPLQAYESSS----SGL   84 (218)
Q Consensus        10 ~~~l~~~tLI~p~~svGnVGqLAvDlLI~sl~~~~vG~lds~~lpPvvg~~~y~~~~~g~l~-tp~EvY~s~~----~~i   84 (218)
                      .++++++.||.|.|++|+||.||+||||+.|+++++..+.|+|+||-|..++     ++.+. ..-|+|+-++    +++
T Consensus        12 ep~l~~PvlieGLPGIG~VGKLaAehlv~el~aeK~~el~S~yfPPQV~V~d-----D~~vel~~ne~Y~~k~~~~~~Dl   86 (258)
T COG2047          12 EPELENPVLIEGLPGIGHVGKLAAEHLVEELKAEKFAELFSPYFPPQVLVND-----DSTVELMRNEFYYWKSPGGERDL   86 (258)
T ss_pred             ccccCCceeecCCCCcchHHHHHHHHHHHHhCceeehhhhccCCCCeeEecC-----CceEEeeeceeEEEecCCCCCcE
Confidence            4778999999999999999999999999999999999999999999775443     22332 2457887654    478


Q ss_pred             EEEEEccC-CCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCCcccc
Q 027838           85 TLIQQRSP-VVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQ  163 (218)
Q Consensus        85 ~vlqqRsP-i~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~~~l~  163 (218)
                      +++--+.- .-+--.++.+..+++++++.|.+.|..|.|...+.-.     ..|.|+.++|  +..+-+.+++-|+.-=+
T Consensus        87 iil~Gd~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~vGkl~-----eep~VlGA~t--s~eLi~~lke~gV~fr~  159 (258)
T COG2047          87 IILVGDTQATSSEGQYELTGKILDIAKEFGARMIYTLGGYGVGKLV-----EEPRVLGAVT--SKELIEELKEHGVEFRS  159 (258)
T ss_pred             EEEeccccccCcchhHHHHHHHHHHHHHcCCcEEEEecCcccCccc-----CCceeEEecC--CHHHHHHHHHcCeEecc
Confidence            88755442 3445578999999999999999999999999887632     3688999875  56677788888774322


Q ss_pred             ccCccccchhhhhhhhcCCCCCCCCCCCcccccccccCCC--CcHHHHHHhhhhcC
Q 027838          164 EYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPS--LPFAALFSCFKHAS  217 (218)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~a~l~~~~~~~~  217 (218)
                       ..+... -.=-+-|+-|.+.-+-++++-=-=+.-.|+.|  =-+|+|=..||--|
T Consensus       160 -~epgGg-IVGasGLllg~g~l~gm~gaCLMGeT~GY~vDpkaAkaVL~vl~k~lg  213 (258)
T COG2047         160 -GEPGGG-IVGASGLLLGFGELRGMDGACLMGETPGYLVDPKAAKAVLEVLCKMLG  213 (258)
T ss_pred             -CCCCCc-eechhhhhhhhhhhcCCCceeeccCCCccccChHHHHHHHHHHHHHhC
Confidence             222210 11112244444433333332211123445443  23667777777554

>TIGR00162 conserved hypothetical protein TIGR00162

Probab=98.21  E-value=1.1e-05  Score=68.57  Aligned_cols=73  Identities=16%  Similarity=0.255  Sum_probs=59.4

Q ss_pred             CCcEEEEEEcc-CCCchhHHHHHHHHHHHHHHhCCceEEEEeccCccccccccCCCCCeEEEEeccCCCChhhHHHHhCC
Q 027838           81 SSGLTLIQQRS-PVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGW  159 (218)
Q Consensus        81 ~~~i~vlqqRs-Pi~~~~~~~F~~~L~~wi~~~~~~~VI~Lss~~a~~r~~~~~~~~p~~y~~~s~~~~~~~~~le~Lg~  159 (218)
                      .+.++++.... |+.+...++|+++|++|+++.|+++||.|+|+.+..++     ..|.+|+.+|  ++++.+.++..|.
T Consensus        14 ~~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~-----trp~V~~~at--~~el~~~l~~~g~   86 (188)
T TIGR00162        14 GTDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLV-----EEPYVYGAAT--SPELVEELKEHGV   86 (188)
T ss_pred             CCCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCC-----CCCceEEEeC--CHHHHHHHHhcCC
Confidence            36899999999 77888888999999999999999999999999886533     2477999886  4556667777665


Q ss_pred             c
Q 027838          160 K  160 (218)
Q Consensus       160 ~  160 (218)
                      .
T Consensus        87 ~   87 (188)
T TIGR00162        87 K   87 (188)
T ss_pred             e
Confidence            4

This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
4g4s_P	269	Structure Of Proteasome-Pba1-Pba2 Complex Length =		3e-04

>pdb|4G4S|P Chain P, Structure Of Proteasome-Pba1-Pba2 Complex Length = 269

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 16  SNLILPALSIGNVGQLAVDLLVSSTGAET--VGYLDDQFVLPCV--------GNDAYRPS 65
           S L+LP +S+GN+ QL++D L++S   E   +  LD ++++  V        G+D+    
Sbjct: 4   SCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKD 63
Query: 66  PRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNL 105
                +  L+ + +   GL  IQQR+P+V    V Y  N 
Sbjct: 64  ADMKYSSALEVFYNKKRGLFAIQQRTPLVS---VNYLNNF 100
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
3gaa_A	252	Uncharacterized protein TA1441; the protein with u	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum} Length = 252

 Score = 58.3 bits (140), Expect = 1e-10
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 18  LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAY 77
           ++         G LA   +V + G   V +L  Q + P       +         P + Y
Sbjct: 29  VLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFVGGKLRH------PFRIY 82

Query: 78  ESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSAL 123
            ++S+ + +     P+    + E +  L ++    G   +V++   
Sbjct: 83  ANNSNTVLVAMCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGS 128

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 42/176 (23%)

Query: 39  STGAETVGYLDDQFVLPCVGNDAYRPS--PRGDLALPLQAYESSSSGLTLIQQRSP---V 93
                T  Y++ +  L    N  +      R    L L+          L++ R     +
Sbjct: 104 QPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQ--------ALLELRPAKNVL 154

Query: 94  VKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDY 153
           + G+              SG K  V L      ++Q   M     I++L+  + +  +  
Sbjct: 155 IDGV------------LGSG-KTWVALDVCLSYKVQCK-MDFK--IFWLNLKNCNSPETV 198

Query: 154 CEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD-----LEEEDYYPSL 204
            E L  K L + +P        +S ++     +             L+ + Y   L
Sbjct: 199 LEML-QKLLYQIDPN------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d2p90a1	269	Hypothetical protein Cgl1923 {Corynebacterium glut	99.74

>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Cgl1923-like
family: Cgl1923-like
domain: Hypothetical protein Cgl1923
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.74  E-value=8e-18  Score=120.82  Aligned_cols=147  Identities=11%  Similarity=0.140  Sum_probs=101.1

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCHHHHHHHHHHHCCCCEEEEEEECCCCC------CCCCCCCCCCCCCCCCC-----
Q ss_conf             5796567799879873468---655689999999830699089998469965------30004889999999710-----
Q 027838            6 EEGKHLSESCSNLILPALS---IGNVGQLAVDLLVSSTGAETVGYLDDQFVL------PCVGNDAYRPSPRGDLA-----   71 (218)
Q Consensus         6 ~~~~~~~l~~~tLI~p~~s---iGnVGqLAvDlLI~sl~~~~vG~i~s~~lp------Pvvg~~~y~~~~~g~l~-----   71 (218)
                      .+-...+.++++||++++|   +|+||.+|++|||++|++++||.++++.++      |.|..+      ++++.     
T Consensus        11 ~~~~~~~~~~p~li~~f~G~~DaG~vg~ia~~~Li~~l~~~~v~~i~sd~f~d~~~~rP~v~~~------~~~~~~~~~p   84 (269)
T d2p90a1          11 PEVSGQTAGGPTLIVALQGYADAGHAVESSSSHLMDALDHRLIASFNNDELIDYRSRRPVVVIE------HNEVTSMDEL   84 (269)
T ss_dssp             CCCCCSSSSCCEEEEEEESSSBGGGHHHHHHHHHHHHSCEEEEEEECHHHHCBHHHHCCCEEEC------SSSEEEECCC
T ss_pred             CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEE------CCEEEECCCC
T ss_conf             7556888889879995789710768999999999997698499998164456667779879997------7927853466


Q ss_pred             -EEEE-EEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             -0047-64518983899997167773028999999999999829956999701575421113579888089974367888
Q 027838           72 -LPLQ-AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDG  149 (218)
Q Consensus        72 -tp~e-iY~s~~~~i~vlq~rsPi~~~~~~~F~~~l~~wi~~~g~~~VI~Lss~~a~~r~~~~~~~~p~~y~lss~~~~~  149 (218)
                       .++. ++...++.+++++.  |.+....++|+++|++|+++.|+++||+|+|+++...+.    ....+++.++     
T Consensus        85 ~~~~~~~~~~~~~~illl~g--~eP~~~~~~~a~~il~~~~~~gv~~ii~lgg~~~~~pht----r~~~~~~~~~-----  153 (269)
T d2p90a1          85 NLGLHVVRDNDNKPFLMLSG--PEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHT----RPTVVTAHGN-----  153 (269)
T ss_dssp             CCEEEEEECTTCCEEEEEEE--ECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT----SCCCEEEEES-----
T ss_pred             CCCCEEEECCCCCEEEEEEC--CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC----CCEEEEEECC-----
T ss_conf             55532454588974899926--887403899999999999982996899868526788876----6427999668-----


Q ss_pred             HHHHHHHHCCCCCCCCCCCC
Q ss_conf             14688771972122258565
Q 027838          150 TDDYCEQLGWKRLQEYNPAQ  169 (218)
Q Consensus       150 ~~~~le~Lg~~~le~~~~~~  169 (218)
                      ..+.++.++....+...+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~g  173 (269)
T d2p90a1         154 STDRLKDQVSLDTRMTVPGS  173 (269)
T ss_dssp             SGGGCSSCCCCCCCEEECCC
T ss_pred             CHHHHHHCCCCCCCCCCCCH
T ss_conf             68999854565555576510