Citrus Sinensis ID: 027855

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF
cccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccEEEEEEcccccccccEEEEEcccHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHccEEEEcHHHHHHccccccccccccccccccccccccHHHHHHHHHccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccc
cccccHHHHHHHHHHHHHHcHHccccccEEEEEEEEEccccccccHHccEEEEEccccccccccEEEEEccHHHHHHHHcccEEEEccHHHHHHccHHHHHHHHHHccEEEEEHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccHHHHEEEEEEEEcccccEEcc
MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIglknydpqkdkrfsgsvklphiprpkmkvcmlgDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPrllgpglnkagkfptlvTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLkstmgpsnrif
MSKLQSDALREAVSSIvqysketkkrnftetielqiglknydpqkdkrfsgsvklphiprpKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLylkstmgpsnrif
MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGlkklnknkklvkklakkYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF
****************************TETIELQIGLK**********************KMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ******VNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK**********
**K*QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF
**********EAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF
****QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
P59231217 60S ribosomal protein L10 yes no 1.0 1.0 0.921 1e-105
Q8VZB9216 60S ribosomal protein L10 no no 0.995 1.0 0.912 1e-102
P59230216 60S ribosomal protein L10 no no 0.995 1.0 0.894 1e-100
Q9VTP4217 60S ribosomal protein L10 yes no 0.990 0.990 0.680 5e-74
Q963B6217 60S ribosomal protein L10 N/A no 0.990 0.990 0.685 6e-74
Q7RZS0217 60S ribosomal protein L10 N/A no 1.0 1.0 0.626 2e-73
Q9UVJ4217 60S ribosomal protein L10 N/A no 1.0 1.0 0.654 9e-73
Q7ZYS8217 60S ribosomal protein L10 N/A no 0.990 0.990 0.662 4e-71
Q9SW75213 60S ribosomal protein L10 N/A no 0.981 1.0 0.677 8e-71
Q6PC69216 60S ribosomal protein L10 yes no 0.995 1.0 0.668 9e-71
>sp|P59231|R10A3_ARATH 60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1 Back     alignment and function desciption
 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/217 (92%), Positives = 211/217 (97%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REA+SSI+ + KETK RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           PKMK+CMLGDAQHVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASESVIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
           PRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1 Back     alignment and function description
>sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1 Back     alignment and function description
>sp|Q9VTP4|R10AB_DROME 60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=2 SV=2 Back     alignment and function description
>sp|Q963B6|RL10A_SPOFR 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1 Back     alignment and function description
>sp|Q7RZS0|RL10A_NEUCR 60S ribosomal protein L10a OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-10a PE=3 SV=1 Back     alignment and function description
>sp|Q9UVJ4|RL10A_CANAL 60S ribosomal protein L10a OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPL10A PE=3 SV=2 Back     alignment and function description
>sp|Q7ZYS8|RL10A_XENLA 60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1 Back     alignment and function description
>sp|Q9SW75|RL10A_CHLRE 60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1 Back     alignment and function description
>sp|Q6PC69|RL10A_DANRE 60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
15242248217 60S ribosomal protein L10a-3 [Arabidopsi 1.0 1.0 0.921 1e-104
359479518216 PREDICTED: 60S ribosomal protein L10a-1- 0.995 1.0 0.940 1e-103
225440890216 PREDICTED: 60S ribosomal protein L10a-1- 0.995 1.0 0.926 1e-101
449463066216 PREDICTED: 60S ribosomal protein L10a-1- 0.995 1.0 0.912 1e-101
449443440216 PREDICTED: 60S ribosomal protein L10a-1- 0.995 1.0 0.907 1e-100
30680605216 60S ribosomal protein L10a-1 [Arabidopsi 0.995 1.0 0.912 1e-100
351721216216 uncharacterized protein LOC100305550 [Gl 0.995 1.0 0.917 1e-100
356550103216 PREDICTED: 60S ribosomal protein L10a-1 0.995 1.0 0.917 1e-100
192910762216 ribosomal protein L10a [Elaeis guineensi 0.995 1.0 0.907 1e-100
116781901216 unknown [Picea sitchensis] gi|148908521| 0.995 1.0 0.898 1e-99
>gi|15242248|ref|NP_197636.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] gi|145334533|ref|NP_001078612.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] gi|297812373|ref|XP_002874070.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|27923990|sp|P59231.1|R10A3_ARATH RecName: Full=60S ribosomal protein L10a-3 gi|9757825|dbj|BAB08343.1| 60S ribosomal protein L10A [Arabidopsis thaliana] gi|14335148|gb|AAK59854.1| AT5g22440/MWD9_24 [Arabidopsis thaliana] gi|18655359|gb|AAL76135.1| AT5g22440/MWD9_24 [Arabidopsis thaliana] gi|297319907|gb|EFH50329.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|332005643|gb|AED93026.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] gi|332005644|gb|AED93027.1| 60S ribosomal protein L10a-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/217 (92%), Positives = 211/217 (97%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQS+A+REA+SSI+ + KETK RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           PKMK+CMLGDAQHVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASESVIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
           PRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479518|ref|XP_002274218.2| PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440890|ref|XP_002282641.1| PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463066|ref|XP_004149255.1| PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] gi|449516181|ref|XP_004165126.1| PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443440|ref|XP_004139485.1| PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30680605|ref|NP_563813.2| 60S ribosomal protein L10a-1 [Arabidopsis thaliana] gi|28173519|sp|Q8VZB9.1|R10A1_ARATH RecName: Full=60S ribosomal protein L10a-1 gi|17473553|gb|AAL38253.1| putative ribosomal protein L10 [Arabidopsis thaliana] gi|21386915|gb|AAM47861.1| putative ribosomal protein L10 [Arabidopsis thaliana] gi|332190160|gb|AEE28281.1| 60S ribosomal protein L10a-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|351721216|ref|NP_001236946.1| uncharacterized protein LOC100305550 [Glycine max] gi|255625879|gb|ACU13284.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356550103|ref|XP_003543429.1| PREDICTED: 60S ribosomal protein L10a-1 [Glycine max] gi|255632980|gb|ACU16844.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|192910762|gb|ACF06489.1| ribosomal protein L10a [Elaeis guineensis] Back     alignment and taxonomy information
>gi|116781901|gb|ABK22290.1| unknown [Picea sitchensis] gi|148908521|gb|ABR17372.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
TAIR|locus:2176337217 AT5G22440 [Arabidopsis thalian 1.0 1.0 0.843 3.8e-94
TAIR|locus:2201811216 AT1G08360 [Arabidopsis thalian 0.995 1.0 0.834 5.7e-91
TAIR|locus:2042087216 PGY1 "PIGGYBACK1" [Arabidopsis 0.995 1.0 0.820 4e-90
FB|FBgn0036213217 RpL10Ab "Ribosomal protein L10 0.990 0.990 0.606 5.6e-68
CGD|CAL0005037217 RPL10A [Candida albicans (taxi 1.0 1.0 0.580 4.1e-65
ZFIN|ZDB-GENE-030131-2025216 rpl10a "ribosomal protein L10a 0.995 1.0 0.589 5.2e-65
UNIPROTKB|Q5E9E6217 RPL10A "60S ribosomal protein 0.990 0.990 0.560 9.7e-64
UNIPROTKB|E2R9V0217 RPL10A "Ribosomal protein" [Ca 0.990 0.990 0.560 9.7e-64
UNIPROTKB|P62906217 RPL10A "60S ribosomal protein 0.990 0.990 0.560 9.7e-64
RGD|620497217 Rpl10a "ribosomal protein L10A 0.990 0.990 0.560 9.7e-64
TAIR|locus:2176337 AT5G22440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 183/217 (84%), Positives = 194/217 (89%)

Query:     1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
             MSKLQS+A+REA+SSI+ + KETK RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct:     1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query:    61 PKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQI 120
             PKMK+CMLGDAQHVEEAEKIGL+ MDVE                  +HAFLASESVIKQI
Sbjct:    61 PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query:   121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
             PRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF
Sbjct:   121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query:   181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217
             QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct:   181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
TAIR|locus:2201811 AT1G08360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042087 PGY1 "PIGGYBACK1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036213 RpL10Ab "Ribosomal protein L10Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0005037 RPL10A [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2025 rpl10a "ribosomal protein L10a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9E6 RPL10A "60S ribosomal protein L10a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9V0 RPL10A "Ribosomal protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62906 RPL10A "60S ribosomal protein L10a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620497 Rpl10a "ribosomal protein L10A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53028RL10A_TRYBRNo assigned EC number0.58060.98611.0N/Ano
P53026RL10A_MOUSENo assigned EC number0.63420.99070.9907yesno
P54050RL1_METJANo assigned EC number0.31210.93540.9269yesno
P0CX43RL1A_YEASTNo assigned EC number0.63131.01.0yesno
Q6FRF5RL10A_CANGANo assigned EC number0.62671.01.0yesno
Q755D9RL10A_ASHGONo assigned EC number0.63591.01.0yesno
P0CX44RL1B_YEASTNo assigned EC number0.63131.01.0yesno
Q5JH35RL1_PYRKONo assigned EC number0.32520.94000.9444yesno
Q9UWR8RL1_PYRABNo assigned EC number0.30270.99070.9817yesno
Q86L05RL10A_DICDINo assigned EC number0.58250.99530.9953yesno
Q90YV8RL10A_ICTPUNo assigned EC number0.64970.99531.0N/Ano
Q7ZYS8RL10A_XENLANo assigned EC number0.66200.99070.9907N/Ano
Q74M51RL1_NANEQNo assigned EC number0.34100.88010.8967yesno
Q6PC69RL10A_DANRENo assigned EC number0.66820.99531.0yesno
Q9UVJ4RL10A_CANALNo assigned EC number0.65431.01.0N/Ano
P62907RL10A_RATNo assigned EC number0.63880.99070.9907yesno
P62906RL10A_HUMANNo assigned EC number0.63880.99070.9907yesno
Q8VZB9R10A1_ARATHNo assigned EC number0.91240.99531.0nono
Q9SW75RL10A_CHLRENo assigned EC number0.67740.98151.0N/Ano
Q7RZS0RL10A_NEUCRNo assigned EC number0.62671.01.0N/Ano
O74836RL1B_SCHPONo assigned EC number0.63130.99531.0yesno
Q963B6RL10A_SPOFRNo assigned EC number0.68510.99070.9907N/Ano
Q5E9E6RL10A_BOVINNo assigned EC number0.63880.99070.9907yesno
Q4R5P3RL10A_MACFANo assigned EC number0.62960.99070.9907N/Ano
A0B922RL1_METTPNo assigned EC number0.30040.94000.9622yesno
Q9VTP4R10AB_DROMENo assigned EC number0.68050.99070.9907yesno
Q8TZJ9RL1_PYRFUNo assigned EC number0.31060.94000.9444yesno
O57782RL1_PYRHONo assigned EC number0.31500.98610.9771yesno
Q9N4I4RL10A_CAEELNo assigned EC number0.63130.99531.0yesno
P59231R10A3_ARATHNo assigned EC number0.92161.01.0yesno
P59230R10A2_ARATHNo assigned EC number0.89400.99531.0nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Al_scaffold_0006_2113
annotation not avaliable (217 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.3__1166__AT3G11250.1
annotation not avaliable (323 aa)
•  •••• 0.755
fgenesh2_kg.3__936__AT3G09200.1
annotation not avaliable (322 aa)
•  •••• 0.748
fgenesh2_kg.2__971__AT1G67430.1
annotation not avaliable (175 aa)
   •••• 0.734
fgenesh2_kg.1__2897__AT1G27400.1
annotation not avaliable (176 aa)
   •••• 0.731
fgenesh2_kg.4__2101__AT2G40010.1
annotation not avaliable (317 aa)
•  •••• 0.720
fgenesh2_kg.7__621__AT4G34670.1
annotation not avaliable (262 aa)
   •••• 0.710
fgenesh2_kg.3__456__AT3G04840.1
annotation not avaliable (262 aa)
   •••• 0.697
fgenesh2_kg.8__2660__AT5G67510.1
annotation not avaliable (146 aa)
   •••  0.696
fgenesh2_kg.2__1320__AT1G70600.1
annotation not avaliable (146 aa)
   •••• 0.689
fgenesh2_kg.1__2541__AT1G23290.1
annotation not avaliable (146 aa)
   •••• 0.684

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 1e-122
PTZ00225214 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Pr 1e-80
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 3e-73
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 6e-68
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 7e-51
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 4e-41
PRK05424230 PRK05424, rplA, 50S ribosomal protein L1; Validate 2e-10
TIGR01169227 TIGR01169, rplA_bact, ribosomal protein L1, bacter 4e-10
CHL00129229 CHL00129, rpl1, ribosomal protein L1; Reviewed 1e-04
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
 Score =  344 bits (885), Expect = e-122
 Identities = 152/217 (70%), Positives = 192/217 (88%), Gaps = 1/217 (0%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKL S+ALR+A++ I++ S+E KKR F ET+ELQIGLK+YD QKDKRFSGSVKLP++P+
Sbjct: 1   MSKLSSEALRKAIAEILEGSEE-KKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPK 59

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           P +KVC+LGDA H +EA+K+GLD+MD+EGLKK NKNKKLVKKLAKKY AFLAS+S++ QI
Sbjct: 60  PNLKVCVLGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQI 119

Query: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
           PRLLGPGLNKAGKFPTL+TH + +E K+NE K++VKFQLKKVLC+GVAVGN+ M E+Q+ 
Sbjct: 120 PRLLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKKVLCLGVAVGNVEMTEEQLR 179

Query: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217
           QN+ +S+NFLVSLLKKNWQN++ L++KSTMG   RI+
Sbjct: 180 QNIVLSINFLVSLLKKNWQNIKTLHIKSTMGKPQRIY 216

Length = 216
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated Back     alignment and domain information
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 100.0
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 100.0
KOG1570218 consensus 60S ribosomal protein L10A [Translation, 100.0
KOG1685343 consensus Uncharacterized conserved protein [Funct 100.0
KOG1569323 consensus 50S ribosomal protein L1 [Translation, r 99.97
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 99.94
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 96.74
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 81.48
>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-60  Score=395.28  Aligned_cols=216  Identities=70%  Similarity=1.123  Sum_probs=208.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCCCCccceeEecCCCCCCCcEEEEEeCcccHHHHHHc
Q 027855            1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI   80 (217)
Q Consensus         1 ~s~~~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~   80 (217)
                      ||+++++++++||+++++|. +.++++|+|+|+++|+|+++++++++++|+.|.|||+.++..+||||++++.+++|+++
T Consensus         1 m~~~~~~~~~~av~~~~~~~-~~~~~~f~esv~~~i~Lk~id~~~~~~ir~~v~LP~~~gk~~~v~V~a~~~~~~~Ak~a   79 (216)
T PTZ00029          1 MSKLSSEALRKAIAEILEGS-EEKKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPNLKVCVLGDAVHCDEAKKL   79 (216)
T ss_pred             CCcCCHHHHHHHHHHHHhhc-cccccCCceEEEEEEEcCCCCCCcCcccceeEecCCCCCCCcEEEEECCcHHHHHHHHc
Confidence            89999999999999999864 34578899999999999999999989999999999999999999999999889999999


Q ss_pred             CCCeeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhccceeEec
Q 027855           81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLK  160 (217)
Q Consensus        81 g~~~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~~~~  160 (217)
                      ||+++|.++|++.+++++.+|+|+.+||+||||+|+|+.||++|||+|||++|+|+++++++|+.+.|++++++++|+++
T Consensus        80 Ga~vvg~edL~~~~k~~k~~kkl~~~fD~flA~~~im~~l~riLGp~l~p~~K~P~~v~~~~d~~~~i~~~k~~v~~r~~  159 (216)
T PTZ00029         80 GLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPRLLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLK  159 (216)
T ss_pred             CCCEecHHHHHHhhhhHHHHhcccccCCEEEECHHHHHHHHHHhccccccCCCCCCcccCccCHHHHHHHHHheEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             CccEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceecC
Q 027855          161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF  217 (217)
Q Consensus       161 ~~~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpiy  217 (217)
                      +++|++++||+++|+++||+|||.+++++|.+.+|+||.||+++||||||||+++||
T Consensus       160 k~~~i~v~VG~~~~~~e~l~eNi~avl~~i~~~~~kg~~~Iksv~lktTmgp~v~v~  216 (216)
T PTZ00029        160 KVLCLGVAVGNVEMTEEQLRQNIVLSINFLVSLLKKNWQNIKTLHIKSTMGKPQRIY  216 (216)
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhccccccEeEEEEECCCCCCEeCC
Confidence            999999999999999999999999999999999999999999999999999999998

>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1685 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
3izr_A216 Localization Of The Large Subunit Ribosomal Protein 1e-98
1s1i_A217 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-70
2noq_G213 Structure Of Ribosome-Bound Cricket Paralysis Virus 3e-68
3zf7_J214 High-resolution Cryo-electron Microscopy Structure 6e-61
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 9e-20
1cjs_A219 Crystal Structure Of Ribosomal Protein L1 From Meth 7e-15
1u63_A219 The Structure Of A Ribosomal Protein L1-Mrna Comple 1e-12
1dwu_A213 Ribosomal Protein L1 Length = 213 2e-12
2zkr_5212 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-11
3qoy_A242 Crystal Structure Of Ribosomal Protein L1 From Aqui 2e-09
3tg8_A228 Mutant Ribosomal Protein L1 Lacking Ala158 From The 2e-09
3fin_C191 T. Thermophilus 70s Ribosome In Complex With Mrna, 9e-09
2j01_C229 Structure Of The Thermus Thermophilus 70s Ribosome 2e-08
2hgj_C229 Fitting Of Components With Known Structure Into An 2e-08
1ml5_c228 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-08
2v49_C229 Structure Of The Ribosome Recycling Factor Bound To 2e-08
3zvp_C229 Crystal Structure Of The Hybrid State Of Ribosome I 4e-08
4f9t_A229 Ribosomal Protein L1 From Thermus Thermophilus With 7e-08
487d_H224 Seven Ribosomal Proteins Fitted To A Cryo-Electron 8e-08
3umy_A228 Crystal Structure Of Mutant Ribosomal Protein T217a 8e-08
1ad2_A228 Ribosomal Protein L1 Mutant With Serine 179 Replace 8e-08
3u42_A229 Mutant Ribosomal Protein L1 From Thermus Thermophil 8e-08
1zho_A228 The Structure Of A Ribosomal Protein L1 In Complex 2e-07
1mzp_A217 Structure Of The L1 Protuberance In The Ribosome Le 2e-07
2hw8_A228 Structure Of Ribosomal Protein L1-Mrna Complex At 2 4e-07
3e1b_Z213 Structure Of The 50s Subunit Of E. Coli Ribosome In 2e-05
3bbo_D352 Homology Model For The Spinach Chloroplast 50s Subu 2e-04
>pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 216 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (911), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/217 (78%), Positives = 190/217 (87%), Gaps = 1/217 (0%)
Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSKLQSDA+++A++ IV  ++E KKR FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1   MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 59
Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQI 120
           PKM+VCMLGDAQHV++AEK+GLDYMDVE                  YHAFLASE++IKQI
Sbjct: 60  PKMRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQI 119
Query: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
           PRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSM+EKQI 
Sbjct: 120 PRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMDEKQIQ 179
Query: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217
           QN+QMSVNFLVSLLKKNWQNVRCLY+KSTMG   R+F
Sbjct: 180 QNIQMSVNFLVSLLKKNWQNVRCLYVKSTMGKRVRVF 216
>pdb|1S1I|A Chain A, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 217 Back     alignment and structure
>pdb|2NOQ|G Chain G, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 213 Back     alignment and structure
>pdb|3ZF7|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 214 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex Length = 219 Back     alignment and structure
>pdb|1DWU|A Chain A, Ribosomal Protein L1 Length = 213 Back     alignment and structure
>pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 212 Back     alignment and structure
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex Aeolicus Length = 242 Back     alignment and structure
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 Back     alignment and structure
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 Back     alignment and structure
>pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 Back     alignment and structure
>pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 Back     alignment and structure
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 Back     alignment and structure
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In Complex With The Guanosine Triphosphatase Release Factor 3 Length = 229 Back     alignment and structure
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With Substitution Thr217ala Length = 229 Back     alignment and structure
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 224 Back     alignment and structure
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1 In Complex With 80nt 23s Rna From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine Length = 228 Back     alignment and structure
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With Threonine 217 Replaced By Valine Length = 229 Back     alignment and structure
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With Mrna Length = 228 Back     alignment and structure
>pdb|1MZP|A Chain A, Structure Of The L1 Protuberance In The Ribosome Length = 217 Back     alignment and structure
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1 Resolution Length = 228 Back     alignment and structure
>pdb|3E1B|Z Chain Z, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State Length = 213 Back     alignment and structure
>pdb|3BBO|D Chain D, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 352 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 1e-104
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 7e-98
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 2e-93
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 2e-87
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 8e-87
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 5e-12
4f9t_A229 50S ribosomal protein L1; rossman fold, RNA; HET: 4e-11
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 4e-11
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 8e-05
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 3e-04
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
 Score =  300 bits (769), Expect = e-104
 Identities = 137/217 (63%), Positives = 175/217 (80%)

Query: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
           MSK+ S  +RE V  +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PR
Sbjct: 1   MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR 60

Query: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
           P M +C+ GDA  V+ A+  G+D M V+ LKKLNKNKKL+KKL+KKY+AF+ASE +IKQ+
Sbjct: 61  PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV 120

Query: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
           PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ MEE  + 
Sbjct: 121 PRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLV 180

Query: 181 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 217
             + MSVNF VSLLKKNWQNV  L +KS+MGP+ R++
Sbjct: 181 NQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Length = 242 Back     alignment and structure
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A {Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C ... Length = 229 Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 352 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 189 Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Length = 137 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 100.0
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 99.94
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 217
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 1e-46
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 3e-46
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 7e-31
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score =  151 bits (382), Expect = 1e-46
 Identities = 60/212 (28%), Positives = 111/212 (52%), Gaps = 4/212 (1%)

Query: 7   DALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKV 65
           ++L EA+  +   ++   KRNFT+++E+ +  K  D +K D +    V LP  P    +V
Sbjct: 6   ESLIEALK-LALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRV 64

Query: 66  CMLGDAQHVEEAEKIGLD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLL 124
            ++  ++ +E A+K      +  E L+KL   K+ VKKLA++   FL ++  +    R+L
Sbjct: 65  LVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRIL 124

Query: 125 GPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQ 184
           GP L   GKFPT + +   +   +N  K +V  + K    + V +G   M+ + + +N  
Sbjct: 125 GPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAI 184

Query: 185 MSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 216
             +N + +  K    N+R +Y+K+TMG + ++
Sbjct: 185 AVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=7.5e-54  Score=352.78  Aligned_cols=210  Identities=30%  Similarity=0.478  Sum_probs=201.9

Q ss_pred             CCHHHHHHHHHHHHHHhhhhccCCCCCcEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCC
Q 027855            4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL   82 (217)
Q Consensus         4 ~~~~~i~~Av~~L~~~~~~~~~~~~~e~i~l~i~lk~~~~~k-~~~~~~~i~LPh~~~~~~~Icvf~~~~~~~~a~~~g~   82 (217)
                      +|++.+.+||+.++...   ++++|+|+|+|+|+|++++++| ++++|+.|.|||+.++..+|||||+++..++|+++|+
T Consensus         1 ~~~~~~~~ai~~~~~~~---k~rkF~esvel~i~Lk~iD~kk~d~~irg~v~LPh~~gk~~kV~Vf~~~e~~~~Ak~aga   77 (212)
T d1i2aa_           1 MDREALLQAVKEARELA---KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGL   77 (212)
T ss_dssp             CCHHHHHHHHHHHHHHS---CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhC---CccCCCceEEEEEecCCCCCCcccceeeeEeeCCCCCCCcceEEEEechhhHHHhhhccc
Confidence            68999999999999887   5678999999999999999999 7899999999999999999999999888999999999


Q ss_pred             CeeChHHHHhhhhcHHHHHHHhhhcCEEEechhhHhhhhhhhCCCCCCCCCCCceecccccHHHHHHHhhccceeEecCc
Q 027855           83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKV  162 (217)
Q Consensus        83 ~~i~~~~l~k~~~~~~~~r~l~~~~D~flad~~i~~~l~~~LG~~f~~~~K~P~~v~~~~~l~~~i~~~~~~~~~~~~~~  162 (217)
                      +++|+++|.+.+++++..++++.+||+|||+++|||.|+++||+.|+|+++||+|++.+.|+.+.++++++++.|+.+++
T Consensus        78 ~~vg~~el~~~~~~~~~~kk~~~~~D~~iat~~~m~~l~k~lgkiLGpkglmP~p~~~t~di~~~v~~~k~~~~~~~~~~  157 (212)
T d1i2aa_          78 TVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDK  157 (212)
T ss_dssp             EEECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHTEEEEECTTS
T ss_pred             cccCcHHHHHHHhhhhhhhcccccCCeEEecchHHHHHHHHhhhhhhhhhccccCCcccchhhHHHHHHhcceeeeecCC
Confidence            99999999999999988999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             cEEEEEEcCCCCChHHHhccHHHHHHHHHHhccccccceeEEEEEcCCCCceec
Q 027855          163 LCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI  216 (217)
Q Consensus       163 ~~~~v~VG~~~m~~~~i~eNi~a~i~~l~~~~p~~~~~I~~v~lkst~s~~lpi  216 (217)
                      ++++++||+++|+++||.|||.+++++|.+.+|+||.||+++|||||||||++|
T Consensus       158 ~~i~~~IG~~~m~~e~i~eNi~a~~~~i~~~~pkg~~~Ik~v~lssTmgp~~~i  211 (212)
T d1i2aa_         158 PYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKV  211 (212)
T ss_dssp             SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGGGEEEEEEEETTSCCEEC
T ss_pred             ceEEEeeeeccCCHHHHHHHHHHHHHHHHhhCcCCceeEEEEEEECCCCCCEec
Confidence            999999999999999999999999999999999999999999999999999987
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure