Citrus Sinensis ID: 027858
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| 255563106 | 370 | conserved hypothetical protein [Ricinus | 0.995 | 0.583 | 0.699 | 7e-86 | |
| 224114702 | 362 | predicted protein [Populus trichocarpa] | 0.981 | 0.588 | 0.685 | 1e-85 | |
| 356521442 | 368 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.570 | 0.685 | 2e-84 | |
| 356555410 | 375 | PREDICTED: uncharacterized protein LOC10 | 0.880 | 0.509 | 0.737 | 2e-82 | |
| 147767568 | 367 | hypothetical protein VITISV_036403 [Viti | 0.889 | 0.525 | 0.715 | 1e-81 | |
| 297740486 | 377 | unnamed protein product [Vitis vinifera] | 0.889 | 0.511 | 0.715 | 1e-81 | |
| 225443831 | 409 | PREDICTED: uncharacterized protein LOC10 | 0.889 | 0.471 | 0.715 | 2e-81 | |
| 297851330 | 380 | hypothetical protein ARALYDRAFT_473111 [ | 0.834 | 0.476 | 0.75 | 2e-81 | |
| 356500127 | 371 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.560 | 0.684 | 2e-81 | |
| 357446949 | 360 | hypothetical protein MTR_2g015720 [Medic | 0.958 | 0.577 | 0.683 | 2e-81 |
| >gi|255563106|ref|XP_002522557.1| conserved hypothetical protein [Ricinus communis] gi|223538248|gb|EEF39857.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 156/223 (69%), Positives = 184/223 (82%), Gaps = 7/223 (3%)
Query: 1 MGFGS----HVLLFWLFQFVLLSSMLLKEAEAEQHLYNVTSL-RGRKQVSG-CNLFQGRW 54
MGF S VL+ Q VLL + L+E A+QH YNVT L +GRKQVS CNLFQG+W
Sbjct: 1 MGFSSKSRCQVLVSLFSQLVLLFT-FLQETTAQQHYYNVTRLLKGRKQVSSTCNLFQGKW 59
Query: 55 VIDPSYPLYDSSSCPFIDAEFDCLKYGRPDKQYLKYSWQPASCAVPRFDGGDFLRRYRGK 114
V+DP+YPLYD+S CPFID EF+C K+GRPD QYLKYSWQP SC VPRF+G DFLRR+RGK
Sbjct: 60 VVDPAYPLYDASGCPFIDPEFNCQKFGRPDTQYLKYSWQPDSCNVPRFNGVDFLRRWRGK 119
Query: 115 RIMFVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVD 174
+IMFVGDSLSLNMWESLSCMIHASVPNAKTS V +++L SV+F+EY VTL ++RTPYLVD
Sbjct: 120 KIMFVGDSLSLNMWESLSCMIHASVPNAKTSSVDRDSLHSVTFDEYDVTLYMFRTPYLVD 179
Query: 175 IVKQKVGRVLTLNSIQAGKFWKDMDVLIFNSWHWWTHTGKAQP 217
IV++ VGRVL L+SI+ G WK MD+LIFNSWHWWTHTG++QP
Sbjct: 180 IVRESVGRVLRLDSIEGGNAWKGMDLLIFNSWHWWTHTGRSQP 222
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114702|ref|XP_002316834.1| predicted protein [Populus trichocarpa] gi|222859899|gb|EEE97446.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356521442|ref|XP_003529365.1| PREDICTED: uncharacterized protein LOC100803167 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356555410|ref|XP_003546025.1| PREDICTED: uncharacterized protein LOC100818476 [Glycine max] | Back alignment and taxonomy information |
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| >gi|147767568|emb|CAN60202.1| hypothetical protein VITISV_036403 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297740486|emb|CBI30668.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225443831|ref|XP_002274664.1| PREDICTED: uncharacterized protein LOC100258410 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297851330|ref|XP_002893546.1| hypothetical protein ARALYDRAFT_473111 [Arabidopsis lyrata subsp. lyrata] gi|297339388|gb|EFH69805.1| hypothetical protein ARALYDRAFT_473111 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356500127|ref|XP_003518885.1| PREDICTED: uncharacterized protein LOC100820311 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357446949|ref|XP_003593750.1| hypothetical protein MTR_2g015720 [Medicago truncatula] gi|355482798|gb|AES64001.1| hypothetical protein MTR_2g015720 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| TAIR|locus:2029959 | 380 | TBL38 "AT1G29050" [Arabidopsis | 0.834 | 0.476 | 0.744 | 2.3e-78 | |
| TAIR|locus:2055425 | 385 | TBL37 "AT2G34070" [Arabidopsis | 0.811 | 0.457 | 0.745 | 1e-75 | |
| TAIR|locus:2041574 | 367 | TBL39 "AT2G42570" [Arabidopsis | 0.815 | 0.482 | 0.646 | 3.7e-64 | |
| TAIR|locus:2055878 | 364 | AT2G31110 "AT2G31110" [Arabido | 0.861 | 0.513 | 0.596 | 7.9e-62 | |
| TAIR|locus:2099402 | 356 | TBL41 "TRICHOME BIREFRINGENCE- | 0.792 | 0.483 | 0.575 | 1.4e-55 | |
| TAIR|locus:2037498 | 359 | TBL42 "TRICHOME BIREFRINGENCE- | 0.806 | 0.487 | 0.536 | 7.2e-52 | |
| TAIR|locus:2178813 | 402 | PMR5 "AT5G58600" [Arabidopsis | 0.792 | 0.427 | 0.505 | 4.8e-46 | |
| TAIR|locus:2045688 | 398 | TBL45 "AT2G30010" [Arabidopsis | 0.778 | 0.424 | 0.502 | 8.1e-44 | |
| TAIR|locus:2182157 | 464 | TBL11 "TRICHOME BIREFRINGENCE- | 0.764 | 0.357 | 0.412 | 3.1e-35 | |
| TAIR|locus:2155874 | 457 | TBL4 "AT5G49340" [Arabidopsis | 0.783 | 0.371 | 0.389 | 8.3e-35 |
| TAIR|locus:2029959 TBL38 "AT1G29050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 137/184 (74%), Positives = 162/184 (88%)
Query: 36 TSLRGRKQ--VSGCNLFQGRWVIDPSYPLYDSSSCPFIDAEFDCLKYGRPDKQYLKYSWQ 93
+SLRG+KQ SGCNLFQGRWV D SYP YDSS CPFID EFDCLK+GRPDKQ+LKYSWQ
Sbjct: 48 SSLRGKKQRRASGCNLFQGRWVFDASYPFYDSSKCPFIDGEFDCLKFGRPDKQFLKYSWQ 107
Query: 94 PASCAVPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLS 153
P SC +PRFDGG FLR+YRGKR+MFVGDSLSLNMWESL+CMIHASVPNAKT+F+++ LS
Sbjct: 108 PESCTIPRFDGGAFLRKYRGKRVMFVGDSLSLNMWESLACMIHASVPNAKTTFLKRTPLS 167
Query: 154 SVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGK-FWKDMDVLIFNSWHWWTHT 212
+++F+EYGVTL LYRTPY+VDI K++VGRVL L +I+ G WK+MDVL+FNSWHWWTH
Sbjct: 168 TLTFQEYGVTLYLYRTPYIVDISKERVGRVLNLGAIEGGADAWKNMDVLVFNSWHWWTHK 227
Query: 213 GKAQ 216
G++Q
Sbjct: 228 GQSQ 231
|
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| TAIR|locus:2055425 TBL37 "AT2G34070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2041574 TBL39 "AT2G42570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2055878 AT2G31110 "AT2G31110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2099402 TBL41 "TRICHOME BIREFRINGENCE-LIKE 41" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2178813 PMR5 "AT5G58600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2045688 TBL45 "AT2G30010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2182157 TBL11 "TRICHOME BIREFRINGENCE-LIKE 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155874 TBL4 "AT5G49340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00110748 | hypothetical protein (362 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 217 | |||
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 9e-69 | |
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 4e-41 | |
| pfam14416 | 55 | pfam14416, PMR5N, PMR5 N terminal Domain | 3e-27 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
Score = 215 bits (548), Expect = 9e-69
Identities = 94/174 (54%), Positives = 116/174 (66%), Gaps = 2/174 (1%)
Query: 45 SGCNLFQGRWVIDPSYPLYDSSSCP-FIDAEFDCLKYGRPDKQYLKYSWQPASCAVPRFD 103
S C LF G WV D SYPLY SS CP ID EF+C YGRPD YLKY WQP +C +PRF+
Sbjct: 51 STCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFN 110
Query: 104 GGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVT 163
G +FL + +GK +MFVGDSL N WESL C+I +SVP+ +T R + LS+ F +YGV+
Sbjct: 111 GLEFLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVS 170
Query: 164 LLLYRTPYLVDIVKQKVGRVLTLNSIQA-GKFWKDMDVLIFNSWHWWTHTGKAQ 216
+ Y+ PYLVDI + RVL L I W+D DVLIFN+ HWW+H G Q
Sbjct: 171 ISFYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQ 224
|
Length = 387 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
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| >gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF14416 | 55 | PMR5N: PMR5 N terminal Domain | 99.96 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 99.91 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 96.45 | |
| cd01834 | 191 | SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SG | 80.52 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-72 Score=516.44 Aligned_cols=175 Identities=54% Similarity=1.078 Sum_probs=163.5
Q ss_pred CCCCCCcCcccceeeCCCCCCCCCCCCC-CccCccccccCCCCCCcccceeeecCCCCCCCCChHHHHHHhcCCcEEEec
Q 027858 42 KQVSGCNLFQGRWVIDPSYPLYDSSSCP-FIDAEFDCLKYGRPDKQYLKYSWQPASCAVPRFDGGDFLRRYRGKRIMFVG 120 (217)
Q Consensus 42 ~~~~~Cd~~~G~WV~d~~~PlY~~~~Cp-~i~~~~~C~~nGRpd~~yl~WrWqP~~C~l~rfd~~~fL~~lrgKrl~FVG 120 (217)
...++||+|+|+||+|+++|+|++++|| ||++++||++|||||++|++|||||++|+||||||.+|||+||||||||||
T Consensus 48 ~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVG 127 (387)
T PLN02629 48 ANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVG 127 (387)
T ss_pred CCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEec
Confidence 5567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhcccCCCCeeeeeecCcceEEEEeecceEEEEEEccccccceeccccceEEeccccc-CCCCCCCc
Q 027858 121 DSLSLNMWESLSCMIHASVPNAKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQA-GKFWKDMD 199 (217)
Q Consensus 121 DSl~Rnq~~SLlClL~~~~p~~~~~~~~~~~~~~~~f~~yn~Tv~f~WsPfLV~~~~~~~~~~L~lD~~~~-~~~w~~~D 199 (217)
|||+|||||||+|||++++|..++...++++..+|+|++||+||+||||||||+.++....++|+||+++. +++|+++|
T Consensus 128 DSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~~~~~l~LD~id~~a~~w~~~D 207 (387)
T PLN02629 128 DSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDAD 207 (387)
T ss_pred cccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCCCceeEEecCcchhhhhhccCC
Confidence 99999999999999999998766555567788999999999999999999999988766667999999987 89999999
Q ss_pred EEEEcccccccCCCCCC
Q 027858 200 VLIFNSWHWWTHTGKAQ 216 (217)
Q Consensus 200 vLV~ntGhWw~~~~~~~ 216 (217)
||||||||||.|++..+
T Consensus 208 vlVfntghWw~~~~~~~ 224 (387)
T PLN02629 208 VLIFNTGHWWSHQGSLQ 224 (387)
T ss_pred EEEEeCccccCCCCeeE
Confidence 99999999999987653
|
|
| >PF14416 PMR5N: PMR5 N terminal Domain | Back alignment and domain information |
|---|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
| >cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| 4hf7_A | 209 | Putative acylhydrolase; PF13472 family, structural | 83.72 | |
| 3hp4_A | 185 | GDSL-esterase; psychrotrophic, monoethylphosphonat | 80.98 |
| >4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.72 E-value=0.4 Score=38.33 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=13.1
Q ss_pred cCCcEEEecchhhHH
Q 027858 112 RGKRIMFVGDSLSLN 126 (217)
Q Consensus 112 rgKrl~FVGDSl~Rn 126 (217)
.+++|+|+|||+++.
T Consensus 25 ~~~~Iv~~GDSit~g 39 (209)
T 4hf7_A 25 KEKRVVFMGNXITEG 39 (209)
T ss_dssp GGCCEEEEESHHHHH
T ss_pred CCCeEEEECcHHHhC
Confidence 567899999999985
|
| >3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 91.69 | |
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 89.34 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 89.14 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 87.11 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 80.86 | |
| d1vjga_ | 201 | Hypothetical protein alr1529 {Nostoc sp. pcc 7120 | 80.36 |
| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: BT2961-like domain: Uncharacterized protein BT2961 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=91.69 E-value=0.025 Score=41.49 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=13.5
Q ss_pred hcCCcEEEecchhhHH
Q 027858 111 YRGKRIMFVGDSLSLN 126 (217)
Q Consensus 111 lrgKrl~FVGDSl~Rn 126 (217)
..||||+|+|||++-.
T Consensus 6 ~~~kkI~~~GDS~T~g 21 (248)
T d3bzwa1 6 WQGKKVGYIGDSITDP 21 (248)
T ss_dssp TTTCEEEEEESTTTCT
T ss_pred CCCCEEEEEehHHccC
Confidence 3699999999999753
|
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc 7120 [TaxId: 103690]} | Back information, alignment and structure |
|---|