Citrus Sinensis ID: 027891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVYG
Secondary Structure (PSIPRED)
cccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHccccEEEEEcccccEEEEEEcccccccccEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccHccccccccccccccccHHHccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEccEEEEEEEEcccccccEEEEEcEEEEEEc
Coil and Loop (DISEMBL)
mdrrdglalpgsasfymqrgmtgsgsgtqpslhgspgihplsnpslqfqsniggstigstlsvdpssaisphgvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgtgrkqQVSSlgeslsgsagmgftphVITVAVGEDIAMKLLSFSQQGPRAICVLSangaistatlrqpsssggsvtyecpflevyg
Flexible Loop (DISEMBL)
mdrrdglalpgSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIStatlrqpsssggsvtyeCPFLEVYG
Low Complexity Region (SEG)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEpvkrkrgrprkygpdgSVSLALSPSVSTHPGTISptqkrgrgrppgtgrkqqVsslgeslsgsAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVYG
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAIST*************TYECPFL****
Disordered Region (DISOPRED)
****************************************************************************************************************************************************SAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVYG
Disordered Region (DISEMBL)
********LPGSASFYMQRGM*************SPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVT**************************VSLALSP*************************************GSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTAT**********VTYECPFLEVYG
Disordered Region (DISPRO)
*********P***SFY***GMTGSGSGTQPSLHGSPGIHPLSNP**********************************************************S*SL***********************************LGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVYG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.336	0.234	0.368	8e-05

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 124 KRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAIC 183
           KR RGRPPG+  K +   +    S +A      HV+ V+ G DI   + +++++  R + 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNA---LRSHVLEVSPGADIVESVSTYARRRGRGVS 142

Query: 184 VLSANGAISTATLRQP 199
           VL  NG +S  TLRQP
Sbjct: 143 VLGGNGTVSNVTLRQP 158

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
255541558	340	DNA binding protein, putative [Ricinus c	0.976	0.623	0.774	2e-88
133907524	340	AT-hook DNA-binding protein [Gossypium h	0.976	0.623	0.732	2e-84
225454180	345	PREDICTED: uncharacterized protein LOC10	0.976	0.614	0.764	4e-81
224130232	336	predicted protein [Populus trichocarpa]	0.953	0.616	0.713	3e-75
358249184	341	uncharacterized protein LOC100814615 [Gl	0.953	0.607	0.688	1e-72
224067876	328	predicted protein [Populus trichocarpa]	0.926	0.612	0.665	2e-70
449518609	334	PREDICTED: uncharacterized LOC101203138	0.944	0.613	0.640	1e-69
449441474	334	PREDICTED: uncharacterized protein LOC10	0.944	0.613	0.640	1e-69
356568374	342	PREDICTED: uncharacterized protein LOC10	0.953	0.605	0.665	2e-69
356520420	340	PREDICTED: uncharacterized protein LOC10	0.967	0.617	0.650	6e-68

>gi|255541558|ref|XP_002511843.1| DNA binding protein, putative [Ricinus communis] gi|223549023|gb|EEF50512.1| DNA binding protein, putative [Ricinus communis]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 191/213 (89%), Gaps = 1/213 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYMQRGMTGSGSGTQ  L+ S GI+PL++ ++ FQSN+G +TIGST
Sbjct: 1   MDRRDAMAMSGSASFYMQRGMTGSGSGTQSGLNVSSGINPLTSTNVSFQSNVGANTIGST 60

Query: 61  LSVDPSSAISPHGVNVTASASMPQ-SEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++ S+AI PHGVNV AS+ MP   EPVKRKRGRPRKYGPDG+VSLALSPS+STHPGTI
Sbjct: 61  LPLETSTAIPPHGVNVGASSLMPPPGEPVKRKRGRPRKYGPDGTVSLALSPSLSTHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +PTQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 121 TPTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           RAIC+LSANGA+ST TLRQPS+SGGSVTYE  F
Sbjct: 181 RAICILSANGAVSTVTLRQPSTSGGSVTYEGRF 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133907524|gb|ABO42262.1| AT-hook DNA-binding protein [Gossypium hirsutum]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/213 (73%), Positives = 186/213 (87%), Gaps = 1/213 (0%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDRRD +AL GSAS+YMQ RG+TGSGSGTQ  +HGSPGIHPLS+P++Q+QS+I  +T+G+
Sbjct: 1   MDRRDAMALSGSASYYMQQRGITGSGSGTQSGVHGSPGIHPLSSPNVQYQSSISATTMGA 60

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           TL V+P S I+PH VNV    ++   E VKRKRGRPRKYGPDG+VSLAL+P+ +THPGTI
Sbjct: 61  TLPVEPLSGITPHNVNVGTPPAVQPGETVKRKRGRPRKYGPDGTVSLALTPASATHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P QKRGRGRPPGTGRKQQ+SSLGE LSGSAGMGFTPHVIT+A+GEDIA KL+SFSQQGP
Sbjct: 121 TPIQKRGRGRPPGTGRKQQLSSLGELLSGSAGMGFTPHVITIAIGEDIATKLMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           R +C+LSANGA+ST TLR+PSSSGG+VTYE  F
Sbjct: 181 REVCILSANGAVSTVTLRKPSSSGGTVTYEGRF 213

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454180|ref|XP_002272142.1| PREDICTED: uncharacterized protein LOC100265498 [Vitis vinifera] gi|297745264|emb|CBI40344.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/217 (76%), Positives = 188/217 (86%), Gaps = 5/217 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGT--QPSLHGSPGIHPLSNPSLQFQSNIGGS-TI 57
           MDRRD +A+PGS S+YMQRGM GSGSG+  QP LHGSPGI  LSNPS+ FQ NIGG  ++
Sbjct: 1   MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSM 60

Query: 58  GSTLSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHP 116
           GSTL V+PSS IS HGVNV A S  +P SEPVKRKRGRPRKYGPDG+VSLALSPS +T P
Sbjct: 61  GSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSP 120

Query: 117 GTISP-TQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFS 175
           GT++  TQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPHVITVAVGED+A K++SFS
Sbjct: 121 GTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHVITVAVGEDVATKIMSFS 180

Query: 176 QQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           QQGPRAIC+LSANGA+ST TLRQPS+SGG+VTYE  F
Sbjct: 181 QQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRF 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130232|ref|XP_002320785.1| predicted protein [Populus trichocarpa] gi|222861558|gb|EEE99100.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 152/213 (71%), Positives = 181/213 (84%), Gaps = 6/213 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYM RG+T SGS     ++ S  I+ LSN ++ FQ NIG +T+GST
Sbjct: 1   MDRRDAMAISGSASFYMHRGITSSGS-----MNVSSNINTLSNTNVAFQPNIGANTMGST 55

Query: 61  LSVDPSSAISPHGVNVTASASMPQS-EPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++   AISPHGVNV   ++MP S EPVKRKRGRPRKYGPDG+VSLALS S+STHPGTI
Sbjct: 56  LPMEHPVAISPHGVNVGVPSTMPPSGEPVKRKRGRPRKYGPDGAVSLALSSSLSTHPGTI 115

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 116 TPSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 175

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           RA+C+LSANGA+ST TLRQPS+SGG+VTYE  F
Sbjct: 176 RAVCILSANGAVSTVTLRQPSTSGGTVTYEGRF 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249184|ref|NP_001239751.1| uncharacterized protein LOC100814615 [Glycine max] gi|255636132|gb|ACU18409.1| unknown [Glycine max]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 175/215 (81%), Gaps = 8/215 (3%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL GS  +YMQ RG+ GSG   QP LH SP + PLSNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMALSGS--YYMQQRGIPGSGG--QPELHISPNMRPLSNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S+HPG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPLGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSHPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            +S +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDIA K+++FSQQ
Sbjct: 116 ALSQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           GPR +C+LSANGA+ST TLRQPS+SGG+VTYE  F
Sbjct: 176 GPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRF 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067876|ref|XP_002302577.1| predicted protein [Populus trichocarpa] gi|222844303|gb|EEE81850.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/212 (66%), Positives = 169/212 (79%), Gaps = 11/212 (5%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD + + GSASF+MQ      GSGT PSL+ S GI+ LSN +  FQ N+G +T+GS 
Sbjct: 1   MDRRDTMTISGSASFFMQ------GSGTHPSLNVSSGINTLSNINAPFQPNMGANTMGSA 54

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
           L ++  +AIS     V   ++M   +P KRKRGRPRKYGPDG+VSLALSPS+STHP T  
Sbjct: 55  LLMEHPAAIS-----VGELSTMVSGQPEKRKRGRPRKYGPDGAVSLALSPSLSTHPETSI 109

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
           P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGPR
Sbjct: 110 PSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPR 169

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           AIC+LSANGA+ST TL QPS+SGG+VTYE  F
Sbjct: 170 AICILSANGAVSTVTLHQPSTSGGTVTYEGRF 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518609|ref|XP_004166329.1| PREDICTED: uncharacterized LOC101203138 [Cucumis sativus]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 172/214 (80%), Gaps = 9/214 (4%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +AL GS SFYMQRG++ SGSG Q       G+   +NP++ FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQ-------GLRSSTNPNVAFQTNTGGNNVGSG 53

Query: 61  LSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVS-THPGT 118
           L +DP+S ISP+G NV A S  +  SEPVKRKRGRPRKYG +G+VSLALSPS S  +P T
Sbjct: 54  LPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAT 113

Query: 119 ISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQG 178
           ++ + KRGRGRPPG+G+KQQ++SL E+LSGSAGMGFTPHVIT+ +GED+A K++SFSQQG
Sbjct: 114 VASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQG 173

Query: 179 PRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           PR +C+LSANGA+ST TLRQPS+SGG+VTYE  F
Sbjct: 174 PRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRF 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441474|ref|XP_004138507.1| PREDICTED: uncharacterized protein LOC101203138 [Cucumis sativus]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 172/214 (80%), Gaps = 9/214 (4%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +AL GS SFYMQRG++ SGSG Q       G+   +NP++ FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQ-------GLRSSTNPNVAFQTNTGGNNVGSG 53

Query: 61  LSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVS-THPGT 118
           L +DP+S ISP+G NV A S  +  SEPVKRKRGRPRKYG +G+VSLALSPS S  +P T
Sbjct: 54  LPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAT 113

Query: 119 ISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQG 178
           ++ + KRGRGRPPG+G+KQQ++SL E+LSGSAGMGFTPHVIT+ +GED+A K++SFSQQG
Sbjct: 114 VASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQG 173

Query: 179 PRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           PR +C+LSANGA+ST TLRQPS+SGG+VTYE  F
Sbjct: 174 PRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRF 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568374|ref|XP_003552386.1| PREDICTED: uncharacterized protein LOC100802542 isoform 1 [Glycine max] gi|356568376|ref|XP_003552387.1| PREDICTED: uncharacterized protein LOC100802542 isoform 2 [Glycine max]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/215 (66%), Positives = 174/215 (80%), Gaps = 8/215 (3%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL  S S+YMQ RG+ GSG+   P LH SP + P+SNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMAL--SGSYYMQQRGIPGSGA--PPELHISPNMRPISNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S++PG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            ++ +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDI  K+++FSQQ
Sbjct: 116 ALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           G RA+C+LSANGA+ST TLRQPS+SGG+VTYE  F
Sbjct: 176 GARAVCILSANGAVSTVTLRQPSTSGGTVTYEGRF 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520420|ref|XP_003528860.1| PREDICTED: uncharacterized protein LOC100799791 [Glycine max]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 169/212 (79%), Gaps = 2/212 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDR D +  PGSAS+YMQRG+ G+G+  QP LH SP I PLSN +L FQS+IGG     +
Sbjct: 1   MDRGDQMTFPGSASYYMQRGIPGAGN--QPELHNSPNIRPLSNSNLPFQSSIGGGGTIGS 58

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
                SS IS   VNV+A +     E VKRKRGRPRKYGPDG+VSLAL+P+ ++HPG ++
Sbjct: 59  TLPLESSGISAPCVNVSAPSGAVPGETVKRKRGRPRKYGPDGAVSLALTPTPASHPGALA 118

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
             QKRGRGRPPG+G+KQQ++SLGE +SGSAGMGFTPH+IT+AVGEDIA K+++FSQQGPR
Sbjct: 119 QGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPR 178

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYECPF 212
           AIC+LSANGA+ST TLRQPS+SGG+VTYE  F
Sbjct: 179 AICILSANGAVSTVTLRQPSTSGGTVTYEGRF 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.944	0.589	0.422	2.6e-31
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.944	0.579	0.417	6.9e-31
TAIR|locus:2031306	361	AT1G63480 [Arabidopsis thalian	0.290	0.174	0.571	3.1e-23
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.290	0.166	0.539	1.5e-21
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.285	0.176	0.629	1.1e-20
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.285	0.174	0.709	7.8e-20
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.285	0.194	0.709	1.5e-19
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.290	0.188	0.619	7.9e-17
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.271	0.140	0.661	2.1e-16
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.285	0.153	0.629	2.5e-16

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 96/227 (42%), Positives = 121/227 (53%)

Query:     1 MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSP----GIHPLSNPSLQFQSNIGGST 56
             MDRRD + L GS S+Y+ RG++GSG    P+ HGSP    G+  L N +  F S  G + 
Sbjct:     1 MDRRDAMGLSGSGSYYIHRGLSGSGP---PTFHGSPQQQQGLRHLPNQNSPFGS--GSTG 55

Query:    57 IGS-TLSVDPSSAIS-------PH--GVNVTASASMPQSEXXXXXXXXXXXXXXXXSVSL 106
              GS +L  DPS A +       PH  GVN+ A    P                   SVSL
Sbjct:    56 FGSPSLHGDPSLATAAGGAGALPHHIGVNMIAPPPPPSETPMKRKRGRPRKYGQDGSVSL 115

Query:   107 ALSPS-VSTHPGTISXXXXXXXXXXXXXXXXXXVXXXXXXXXXXAGMGFTPHVITVAVGE 165
             ALS S VST   T +                  +          +GM FTPHVI V++GE
Sbjct:   116 ALSSSSVSTI--TPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVIAVSIGE 173

Query:   166 DIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
             DIA K+++FSQQGPRAICVLSA+GA+STATL QPS+S G++ YE  F
Sbjct:   174 DIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYEGRF 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 93/223 (41%), Positives = 114/223 (51%)

Query:     1 MDRRDGLALPGSASFYMQRGMTGSGSG---TQPSLHGSPGIHPLSNPSLQFQSNI----- 52
             MDRRD +AL GS S+Y+QRG+ GSG     TQP+ HGS G H  +N    F SN      
Sbjct:     1 MDRRDAMALSGSGSYYIQRGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPNPNPN 60

Query:    53 -GG-ST--IGSTLSVDPSSAISPHGVNVTASASMPQSEXXXXXXXXX--XXXXXXXSVSL 106
              GG ST  +   L VD S A S       A  + P  +                  SVSL
Sbjct:    61 PGGVSTGFVSPPLPVDSSPADSSAAA-AGALVAPPSGDTSVKRKRGRPRKYGQDGGSVSL 119

Query:   107 ALSPSVSTHPGTISXXXXXXXXXXXXXXXXXXVXXXXXXXXXXAGMGFTPHVITVAVGED 166
             ALSPS+S      +                  +           GM FTPHVI V++GED
Sbjct:   120 ALSPSISNVSPNSNKRGRGRPPGSGKKQRLSSIGEMMPSST---GMSFTPHVIVVSIGED 176

Query:   167 IAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             IA K++SFS QGPRAICVLSA+GA+STATL QP+ S G++ YE
Sbjct:   177 IASKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYE 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031306 AT1G63480 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI++  GEDIA K+LSFSQQ PRA+C++S  G IS+ TL +P S+   +TYE
Sbjct:   156 AGLAFAPHVISIGAGEDIAAKVLSFSQQRPRALCIMSGTGTISSVTLCKPGSTDRHLTYE 215

Query:   210 CPF 212
              PF
Sbjct:   216 GPF 218

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 34/63 (53%), Positives = 48/63 (76%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI+V  GEDI  K+LSFSQ+ PRA+C++S  G +S+ TLR+P+S+  S+T+E
Sbjct:   173 AGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSVTLREPASTTPSLTFE 232

Query:   210 CPF 212
               F
Sbjct:   233 GRF 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 39/62 (62%), Positives = 51/62 (82%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEC 210
             G+GFTPHV+TV  GED++ K+++ +  GPRA+CVLSANGAIS  TLRQ ++SGG+VTYE 
Sbjct:   160 GIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEG 219

Query:   211 PF 212
              F
Sbjct:   220 RF 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.8e-20, P = 7.8e-20
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEC 210
             G  FTPH+ITV  GED+ MK++SFSQQGPR+ICVLSANG IS+ TLRQP SSGG++TYE 
Sbjct:   167 GGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYEG 226

Query:   211 PF 212
              F
Sbjct:   227 RF 228

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEC 210
             G  FTPHVITV  GEDI M+++SFSQQGPRAIC+LSANG IS  TLRQP S GG++TYE 
Sbjct:   120 GSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEG 179

Query:   211 PF 212
              F
Sbjct:   180 RF 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 7.9e-17, P = 7.9e-17
 Identities = 39/63 (61%), Positives = 48/63 (76%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             A   FTPH+ITV  GED+  +++SFSQQG  AICVL ANG +S+ TLRQP SSGG++TYE
Sbjct:   146 AAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYE 205

Query:   210 CPF 212
               F
Sbjct:   206 GRF 208

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query:   154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
             FTPHV+TV  GED+ MK+++FSQQG RAIC+LSANG IS  TLRQ  +SGG++TYE  F
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHF 236

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 39/62 (62%), Positives = 48/62 (77%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEC 210
             G  FTPHV+ V  GED+ MK+++FSQQG RAIC+LSANG IS  TLRQ  +SGG++TYE 
Sbjct:   163 GANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEG 222

Query:   211 PF 212
              F
Sbjct:   223 RF 224

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026831001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	6e-15
cd11378	113	cd11378, DUF296, Domain of unknown function found	2e-11

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 68.0 bits (167), Expect = 6e-15
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS---SSGGSVTYEC 210
             PHV+ +  GED+   L +F++Q      VLS  GA+S  TLRQP     S G VT E 
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 211 PF 212
            F
Sbjct: 61  RF 62

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS---SGGSVTYECP 211
            P V+ +  GED+   L +F+++      VLS  GA+S ATLR P        +VT+E  
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 212 F 212
            
Sbjct: 61  L 61

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.36
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	98.39
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.29
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.28
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	83.9
PF14869	133	DUF4488: Domain of unknown function (DUF4488)	80.06

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.36  E-value=6.4e-13  Score=104.88  Aligned_cols=63  Identities=27%  Similarity=0.283  Sum_probs=56.7

Q ss_pred             ceeEEEEecCCccHHHHHHHHhhcCCceEEEecccCeeeeEEeeCCC--CCCCceeEeeeeeeec
Q 027891          154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS--SSGGSVTYECPFLEVY  216 (217)
Q Consensus       154 f~pHVI~V~~GEDV~~kI~~Faqq~~raiCILSasGsVSnVTLRqp~--ssg~tvtyeGrFEILS  216 (217)
                      ||+|+|++.+||||.++|.+||++.....|++++.|+|++|+|+++.  ....+.+|+|+|||||
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~s   65 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIIS   65 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEE
Confidence            68999999999999999999999999878888999999999999973  3346789999999997

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=98.39  E-value=8.8e-07  Score=73.66  Aligned_cols=65  Identities=22%  Similarity=0.223  Sum_probs=57.2

Q ss_pred             CCceeEEEEecCCccHHHHHHHHhhcCCceEEEecccCeeeeEEeeCCCCC---CCceeEeeeeeeec
Q 027891          152 MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSS---GGSVTYECPFLEVY  216 (217)
Q Consensus       152 ~~f~pHVI~V~~GEDV~~kI~~Faqq~~raiCILSasGsVSnVTLRqp~ss---g~tvtyeGrFEILS  216 (217)
                      ..-+-+++++.+|||+.+.|.+||++..-..+|.+|.|++++++|+.-+..   -.++++.++|||||
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlS   74 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLS   74 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEE
Confidence            345778999999999999999999999966699999999999999998732   34789999999998

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.29  E-value=0.0014  Score=34.71  Aligned_cols=12  Identities=75%  Similarity=1.140  Sum_probs=4.3

Q ss_pred             ccCCCCCCCCCC
Q 027891           89 KRKRGRPRKYGP  100 (217)
Q Consensus        89 KkKRGRPRKY~~  100 (217)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            589999999764

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.28  E-value=0.0022  Score=39.82  Aligned_cols=15  Identities=67%  Similarity=0.948  Sum_probs=13.0

Q ss_pred             ccCCCCCCCCCCCCC
Q 027891           89 KRKRGRPRKYGPDGS  103 (217)
Q Consensus        89 KkKRGRPRKY~~dg~  103 (217)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=83.90  E-value=0.38  Score=42.45  Aligned_cols=12  Identities=75%  Similarity=1.107  Sum_probs=10.3

Q ss_pred             ccccCCCCCCCC
Q 027891           87 PVKRKRGRPRKY   98 (217)
Q Consensus        87 ~~KkKRGRPRKY   98 (217)
                      -.|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            489999999964

>PF14869 DUF4488: Domain of unknown function (DUF4488)

Probab=80.06  E-value=2.8  Score=35.06  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             ceEEEecccCeeeeEEeeCCCCCCCceeEeeeeeeec
Q 027891          180 RAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVY  216 (217)
Q Consensus       180 raiCILSasGsVSnVTLRqp~ssg~tvtyeGrFEILS  216 (217)
                      ...=|||.-|+..|+++.. .+ +.++|+.|-||+.|
T Consensus        27 ~~lKilS~Dgtf~Ni~~~~-~~-~aiIt~~GtY~~~s   61 (133)
T PF14869_consen   27 NVLKILSDDGTFVNITMIP-KS-GAIITGYGTYEQPS   61 (133)
T ss_pred             ccEEEEcCCCcEEEEEEeC-CC-CcEEEEeEEEEEcC
Confidence            3577999999999999944 33 58999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	9e-11
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	6e-10
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	8e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 57.4 bits (138), Expect = 9e-11
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ-GPRAICVLSANGAISTATLRQPSSSGGS 205
           S         + + +  G+++  +L +F QQ   RA  +    G+++   LR       +
Sbjct: 11  SHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYA-GQEAT 69

Query: 206 VTYECPF 212
            +    F
Sbjct: 70  TSLTGTF 76

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 54.6 bits (131), Expect = 6e-10
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 156 PHVITVAVGEDIAMKLLSF-SQQGPRAICVLSANGAISTATLRQPSSSGGSVTYECPF 212
              + +  G D+  +++    Q    A  + S  G +ST  +R    S  ++    PF
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLA-DSVSTLQVSAPF 60

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 148 GSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGS 205
            S G     ++  V  GE++   + +F ++      +++  G +    +         
Sbjct: 6   FSLG---RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKE 60

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 5/29 (17%), Positives = 16/29 (55%)

Query: 84  QSEPVKRKRGRPRKYGPDGSVSLALSPSV 112
           + + +K+ +   + Y  D + +LA+  ++
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.48
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.48
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.28
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.27
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.15
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	98.35
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.85
4i95_A	142	Putative uncharacterized protein; lipocalin-like d	87.8

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.48  E-value=7.6e-14  Score=113.64  Aligned_cols=67  Identities=16%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             CCCCCceeEEEEecCCccHHHHHHHHhhcCC-ceEEEecccCeeeeEEeeCCCCCCCceeEeeeeeeec
Q 027891          149 SAGMGFTPHVITVAVGEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVY  216 (217)
Q Consensus       149 s~g~~f~pHVI~V~~GEDV~~kI~~Faqq~~-raiCILSasGsVSnVTLRqp~ssg~tvtyeGrFEILS  216 (217)
                      +..+.+++|+|+|.+||||.++|.+||++.. ++.|||++.|+|++|+||+++... +++|+|+|||||
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIls   80 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVIS   80 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEE
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEE
Confidence            4567899999999999999999999998777 799999999999999999998844 789999999987

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.48  E-value=7.4e-14  Score=112.22  Aligned_cols=62  Identities=21%  Similarity=0.296  Sum_probs=58.2

Q ss_pred             ceeEEEEecCCccHHHHHHHHhhcCC-ceEEEecccCeeeeEEeeCCCCCCCceeEeeeeeeec
Q 027891          154 FTPHVITVAVGEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVY  216 (217)
Q Consensus       154 f~pHVI~V~~GEDV~~kI~~Faqq~~-raiCILSasGsVSnVTLRqp~ssg~tvtyeGrFEILS  216 (217)
                      |++|+|+|.+||||.++|.+||++.. ++.||+++.|+|++|+||+++.. .+++|+|+|||||
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIls   64 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILS   64 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEE
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEE
Confidence            78999999999999999999999887 79999999999999999999984 4789999999986

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.28  E-value=2e-12  Score=103.56  Aligned_cols=62  Identities=8%  Similarity=0.169  Sum_probs=53.9

Q ss_pred             eeEEEEecCCccHHHHHHHHhhcCCceEEEecccCeeeeEEeeCCCCCC---CceeEeeeeeeec
Q 027891          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYECPFLEVY  216 (217)
Q Consensus       155 ~pHVI~V~~GEDV~~kI~~Faqq~~raiCILSasGsVSnVTLRqp~ssg---~tvtyeGrFEILS  216 (217)
                      ++|+|+|.+||||.++|.+||++.....|++++.|+|++|+||+++...   ..++++|+|||||
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIls   74 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELIS   74 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEE
Confidence            6999999999999999999999988544445999999999999987643   2688999999986

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.27  E-value=2.7e-12  Score=103.12  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             eeEEEEecCCccHHHHHHHHhhcCC-ceEEEecccCeeeeEEeeCCCCCC---CceeEeeeeeeec
Q 027891          155 TPHVITVAVGEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSG---GSVTYECPFLEVY  216 (217)
Q Consensus       155 ~pHVI~V~~GEDV~~kI~~Faqq~~-raiCILSasGsVSnVTLRqp~ssg---~tvtyeGrFEILS  216 (217)
                      ++|+|+|.+||||.++|.+||++.. ++.|| ++.|+|++|+||+++...   .+++++|+|||||
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~v-s~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIls   74 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHI-SAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILS   74 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEE-EEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEE-EEEEEEEEEEEECCCCCCcceeEEEecCcEEEEE
Confidence            6999999999999999999999887 56666 999999999999987754   2689999999986

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.15  E-value=3.3e-11  Score=97.58  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=54.3

Q ss_pred             eeEEEEecCCccHHHHHHHHhhcCCceEEEecccCeeeeEEeeCCCCCC---CceeEeeeeeeec
Q 027891          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYECPFLEVY  216 (217)
Q Consensus       155 ~pHVI~V~~GEDV~~kI~~Faqq~~raiCILSasGsVSnVTLRqp~ssg---~tvtyeGrFEILS  216 (217)
                      +.++|+|.+||||.++|.+||++.....|++++.|++++|+||+++...   ..++++|+|||||
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~s   80 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISN   80 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEE
Confidence            7899999999999999999999999655555999999999999976522   2689999999997

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=98.35  E-value=6.7e-07  Score=71.99  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             eeEEEEecCCccHHHHHHHHhhcCCceEEEecccCeeeeEEeeCCCCCC---CceeEeeeeeeec
Q 027891          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYECPFLEVY  216 (217)
Q Consensus       155 ~pHVI~V~~GEDV~~kI~~Faqq~~raiCILSasGsVSnVTLRqp~ssg---~tvtyeGrFEILS  216 (217)
                      +-+++++.+||||.++|..||++..-..+++++.|++++++|+..+...   ...+++ +|||+|
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~s   76 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMAN   76 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEE
Confidence            3489999999999999999999999544455999999999999765422   146788 899997

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.85  E-value=0.00048  Score=41.65  Aligned_cols=17  Identities=59%  Similarity=0.954  Sum_probs=14.9

Q ss_pred             CcCcCCCCCCCCCCCCc
Q 027891          121 PTQKRGRGRPPGTGRKQ  137 (217)
Q Consensus       121 ~~~KR~RGRP~GS~nK~  137 (217)
                      +..||+||||.|||||.
T Consensus         2 ptpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CSCCCCSSCCTTCCCCS
T ss_pred             CCCcCCCCCcCcccccC
Confidence            34799999999999995

>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A

Probab=87.80  E-value=0.59  Score=38.21  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             ceEEEecccCeeeeEEeeCCCCCCCceeEeeeeeeec
Q 027891          180 RAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVY  216 (217)
Q Consensus       180 raiCILSasGsVSnVTLRqp~ssg~tvtyeGrFEILS  216 (217)
                      ...=|||.-|+..|++++. + ++.++|.+|-|||.|
T Consensus        36 n~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S   70 (142)
T 4i95_A           36 NTFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS   70 (142)
T ss_dssp             EEEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred             ccEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence            3677999999999999993 3 588999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	1e-06
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	4e-05

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFS-QQGPRAICVLSANGAISTATLRQPSSSGGS 205
           + S       + + +  G+++  +L +F  Q   RA  +    G+++   LR        
Sbjct: 2   NASTA---RFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-- 56

Query: 206 VTYECPFLEV 215
            T      EV
Sbjct: 57  TTSLTGTFEV 66

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYECPFL 213
            ++ +  G+D+  ++  F ++       +SA GA+ +A +    Q            P  
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPL- 70

Query: 214 EVYG 217
           E+  
Sbjct: 71  EILS 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.26
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	98.94

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.26  E-value=6.5e-12  Score=98.46  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=60.5

Q ss_pred             CCCceeEEEEecCCccHHHHHHHHhhcCC-ceEEEecccCeeeeEEeeCCCCCCCceeEeeeeeeec
Q 027891          151 GMGFTPHVITVAVGEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSGGSVTYECPFLEVY  216 (217)
Q Consensus       151 g~~f~pHVI~V~~GEDV~~kI~~Faqq~~-raiCILSasGsVSnVTLRqp~ssg~tvtyeGrFEILS  216 (217)
                      ++..|-+++++.+||||.++|..||++.. ++.||+++.|++++|+|+++.. ....+++|+|||+|
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~s   68 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVIS   68 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEE
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEE
Confidence            47789999999999999999999998888 8999999999999999999987 56789999999997

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.94  E-value=2.8e-10  Score=88.34  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=54.9

Q ss_pred             eeEEEEecCCccHHHHHHHHhhcCCceEEEecccCeeeeEEeeCCCC---CCCceeEeeeeeeec
Q 027891          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS---SGGSVTYECPFLEVY  216 (217)
Q Consensus       155 ~pHVI~V~~GEDV~~kI~~Faqq~~raiCILSasGsVSnVTLRqp~s---sg~tvtyeGrFEILS  216 (217)
                      +-++|++.+||||.++|.+||++.....|++++.|++++|+|+....   ....+.++|+|||+|
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~s   74 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILS   74 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEE
Confidence            78999999999999999999999997778999999999999996433   234678999999997