Citrus Sinensis ID: 027892

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MCLLETVESKSKANSSSNLTLENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNLKK
cccccHHHccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEEEEEcccccEEEccccEEEcccHHHHHccccccccHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccc
ccEHHEHHHHHHHccccccccccccccccccHHcccccEEEEEEccccccccccEEEEEEEEEEcccccEEccccEEEEEccHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mclletveskskansssnltlenqqnsqtplefeykmPLVWIDLEMTGLKIEVDRILEIACIItdgkltksvegpdlvIHQTKECLDSMgewcqnhheasglTKKVLHSGLTEREAEKQVVEFVKKnvgtytpllagnsVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMrwyprdyrkvpskeqkHRALDDIRESIMELKYYKENIFKTNLKK
mclletveskskansssnltlenqqnsqtpleFEYKMPLVWIDLEMTGLKIEVDRILEIACIITdgkltksvegpdLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKnvgtytpllagNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWyprdyrkvpskeqkhraLDDIRESimelkyykenifktnlkk
MCLLETVESKSKANSSSNLTLENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNLKK
******************************LEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKV***********DIRESIMELKYYKENIF******
*************************************PLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKT****
****************************TPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR*********RALDDIRESIMELKYYKENIFKTNLKK
*CL**T*ESKS************************KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNL**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCLLETVESKSKANSSSNLTLENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
Q9ZVE0222 Oligoribonuclease OS=Arab yes no 0.917 0.896 0.695 2e-80
A2VE52237 Oligoribonuclease, mitoch yes no 0.797 0.729 0.514 7e-48
Q5U1X1237 Oligoribonuclease, mitoch yes no 0.797 0.729 0.514 1e-47
Q9D8S4237 Oligoribonuclease, mitoch yes no 0.797 0.729 0.514 1e-47
Q9Y3B8237 Oligoribonuclease, mitoch yes no 0.797 0.729 0.514 2e-47
Q9VCI0211 Probable oligoribonucleas yes no 0.801 0.824 0.488 1e-42
P57885184 Oligoribonuclease OS=Past yes no 0.820 0.967 0.513 2e-41
A5UFF2182 Oligoribonuclease OS=Haem yes no 0.820 0.978 0.497 3e-41
A5UBG1182 Oligoribonuclease OS=Haem yes no 0.820 0.978 0.497 4e-41
Q4QJM8182 Oligoribonuclease OS=Haem yes no 0.820 0.978 0.497 4e-41
>sp|Q9ZVE0|ORN_ARATH Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2 Back     alignment and function desciption
 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 169/200 (84%), Gaps = 1/200 (0%)

Query: 15  SSSNLTLENQQNSQTPLE-FEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVE 73
           +SS+ T + +++    LE  +YK PLVWIDLEMTGL +EVDRILEIACIIT+G LT+SVE
Sbjct: 21  ASSSSTGKQEESVNGSLEDGDYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVE 80

Query: 74  GPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTP 133
           GPDLV+ QTK+CLD M +WCQ HH ASGLTKKVL S +TEREAE++V+EFVKK+VG+  P
Sbjct: 81  GPDLVVRQTKDCLDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNP 140

Query: 134 LLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRAL 193
           LLAGNSVYVDF+FLKKYMP+LA+LF H+LVDVSS+KALC RW+P + RK P+K+  HRA+
Sbjct: 141 LLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALCARWFPIERRKAPAKKNNHRAM 200

Query: 194 DDIRESIMELKYYKENIFKT 213
           DDIRESI ELKYYK+ IFK 
Sbjct: 201 DDIRESIKELKYYKKTIFKA 220
3'-to-5' exoribonuclease specific for small oligoribonucleotides.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|A2VE52|ORN_BOVIN Oligoribonuclease, mitochondrial OS=Bos taurus GN=REXO2 PE=2 SV=1 Back     alignment and function description
>sp|Q5U1X1|ORN_RAT Oligoribonuclease, mitochondrial OS=Rattus norvegicus GN=Rexo2 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8S4|ORN_MOUSE Oligoribonuclease, mitochondrial OS=Mus musculus GN=Rexo2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y3B8|ORN_HUMAN Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VCI0|ORN_DROME Probable oligoribonuclease OS=Drosophila melanogaster GN=CG10214 PE=1 SV=1 Back     alignment and function description
>sp|P57885|ORN_PASMU Oligoribonuclease OS=Pasteurella multocida (strain Pm70) GN=orn PE=3 SV=1 Back     alignment and function description
>sp|A5UFF2|ORN_HAEIG Oligoribonuclease OS=Haemophilus influenzae (strain PittGG) GN=orn PE=3 SV=1 Back     alignment and function description
>sp|A5UBG1|ORN_HAEIE Oligoribonuclease OS=Haemophilus influenzae (strain PittEE) GN=orn PE=3 SV=1 Back     alignment and function description
>sp|Q4QJM8|ORN_HAEI8 Oligoribonuclease OS=Haemophilus influenzae (strain 86-028NP) GN=orn PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
225435975245 PREDICTED: oligoribonuclease [Vitis vini 0.889 0.787 0.809 5e-91
351722973242 uncharacterized protein LOC100527858 [Gl 0.898 0.805 0.752 5e-84
357493709 1551 Oligoribonuclease [Medicago truncatula] 0.963 0.134 0.704 3e-83
449448848253 PREDICTED: oligoribonuclease-like [Cucum 0.972 0.833 0.723 1e-82
224120530219 predicted protein [Populus trichocarpa] 0.843 0.835 0.825 2e-80
297825941223 exonuclease family protein [Arabidopsis 0.972 0.946 0.669 2e-79
30683321222 oligoribonuclease [Arabidopsis thaliana] 0.917 0.896 0.695 1e-78
79323145218 oligoribonuclease [Arabidopsis thaliana] 0.903 0.899 0.678 3e-78
3885327227 hypothetical protein [Arabidopsis thalia 0.824 0.788 0.748 8e-78
356501364241 PREDICTED: oligoribonuclease-like [Glyci 0.894 0.804 0.757 2e-77
>gi|225435975|ref|XP_002271328.1| PREDICTED: oligoribonuclease [Vitis vinifera] gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  339 bits (869), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 177/194 (91%), Gaps = 1/194 (0%)

Query: 24  QQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTK 83
           +Q+S  P E +Y++PLVWIDLEMTGL +EVDRILEIACIITDG L KSVEGPDLVIHQTK
Sbjct: 52  EQDSMIPSE-QYRLPLVWIDLEMTGLNVEVDRILEIACIITDGNLIKSVEGPDLVIHQTK 110

Query: 84  ECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVD 143
           ECLD+MGEWCQ+HH ASGLTKKVL S ++E+EAEKQV+EFVK+NVGTYTPLLAGNSVY+D
Sbjct: 111 ECLDNMGEWCQSHHSASGLTKKVLRSTISEQEAEKQVIEFVKRNVGTYTPLLAGNSVYMD 170

Query: 144 FMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMEL 203
           F+FLKKYMPDLASLFSHVLVDVSSIKALC+RWYPRD +K PSKE KHRA+DDIRESI EL
Sbjct: 171 FLFLKKYMPDLASLFSHVLVDVSSIKALCIRWYPRDSKKAPSKENKHRAMDDIRESIREL 230

Query: 204 KYYKENIFKTNLKK 217
           KYY+ENIFK +  K
Sbjct: 231 KYYRENIFKASKSK 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351722973|ref|NP_001238542.1| uncharacterized protein LOC100527858 [Glycine max] gi|255633388|gb|ACU17051.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357493709|ref|XP_003617143.1| Oligoribonuclease [Medicago truncatula] gi|355518478|gb|AET00102.1| Oligoribonuclease [Medicago truncatula] Back     alignment and taxonomy information
>gi|449448848|ref|XP_004142177.1| PREDICTED: oligoribonuclease-like [Cucumis sativus] gi|449503429|ref|XP_004161998.1| PREDICTED: oligoribonuclease-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224120530|ref|XP_002330965.1| predicted protein [Populus trichocarpa] gi|222872757|gb|EEF09888.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30683321|ref|NP_850090.1| oligoribonuclease [Arabidopsis thaliana] gi|83305201|sp|Q9ZVE0.2|ORN_ARATH RecName: Full=Oligoribonuclease gi|17381150|gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gi|25054981|gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gi|330252818|gb|AEC07912.1| oligoribonuclease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79323145|ref|NP_001031426.1| oligoribonuclease [Arabidopsis thaliana] gi|222423704|dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana] gi|330252819|gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3885327|gb|AAC77855.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356501364|ref|XP_003519495.1| PREDICTED: oligoribonuclease-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
TAIR|locus:2059263222 AT2G26970 [Arabidopsis thalian 0.940 0.918 0.687 1.7e-73
UNIPROTKB|F1NGJ1236 REXO2 "Uncharacterized protein 0.824 0.758 0.513 6.2e-46
UNIPROTKB|A2VE52237 REXO2 "Oligoribonuclease, mito 0.824 0.755 0.513 1.3e-45
MGI|MGI:1888981237 Rexo2 "REX2, RNA exonuclease 2 0.824 0.755 0.513 2.1e-45
RGD|1304874237 Rexo2 "REX2, RNA exonuclease 2 0.824 0.755 0.513 2.1e-45
UNIPROTKB|Q5U1X1237 Rexo2 "Oligoribonuclease, mito 0.824 0.755 0.513 2.1e-45
UNIPROTKB|E2QWT2236 REXO2 "Uncharacterized protein 0.820 0.754 0.513 2.7e-45
UNIPROTKB|Q9Y3B8237 REXO2 "Oligoribonuclease, mito 0.815 0.746 0.508 2.7e-45
ZFIN|ZDB-GENE-040426-1709259 smfn "small fragment nuclease" 0.824 0.691 0.480 3.1e-44
UNIPROTKB|H0YG54197 REXO2 "Oligoribonuclease, mito 0.788 0.868 0.497 1.1e-41
TAIR|locus:2059263 AT2G26970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 141/205 (68%), Positives = 167/205 (81%)

Query:     8 ESKSKANSSSNLTLENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGK 67
             E    A+SSS    E   N     + +YK PLVWIDLEMTGL +EVDRILEIACIIT+G 
Sbjct:    16 EDAPMASSSSTGKQEESVNGSLE-DGDYKQPLVWIDLEMTGLNVEVDRILEIACIITNGD 74

Query:    68 LTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKN 127
             LT+SVEGPDLV+ QTK+CLD M +WCQ HH ASGLTKKVL S +TEREAE++V+EFVKK+
Sbjct:    75 LTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKH 134

Query:   128 VGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKE 187
             VG+  PLLAGNSVYVDF+FLKKYMP+LA+LF H+LVDVSS+KALC RW+P + RK P+K+
Sbjct:   135 VGSGNPLLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALCARWFPIERRKAPAKK 194

Query:   188 QKHRALDDIRESIMELKYYKENIFK 212
               HRA+DDIRESI ELKYYK+ IFK
Sbjct:   195 NNHRAMDDIRESIKELKYYKKTIFK 219
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004527 "exonuclease activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
UNIPROTKB|F1NGJ1 REXO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE52 REXO2 "Oligoribonuclease, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1888981 Rexo2 "REX2, RNA exonuclease 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304874 Rexo2 "REX2, RNA exonuclease 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U1X1 Rexo2 "Oligoribonuclease, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWT2 REXO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3B8 REXO2 "Oligoribonuclease, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1709 smfn "small fragment nuclease" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H0YG54 REXO2 "Oligoribonuclease, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8ZIW9ORN_YERPE3, ., 1, ., -, ., -0.46280.80180.9613yesno
Q5U1X1ORN_RAT3, ., 1, ., -, ., -0.51440.79720.7299yesno
Q556Y2ORN_DICDI3, ., 1, ., -, ., -0.48080.83410.9526yesno
Q8NMU1ORN_CORGL3, ., 1, ., -, ., -0.43750.88010.8721yesno
Q9D8S4ORN_MOUSE3, ., 1, ., -, ., -0.51440.79720.7299yesno
Q4QJM8ORN_HAEI83, ., 1, ., -, ., -0.49720.82020.9780yesno
A3N1D8ORN_ACTP23, ., 1, ., -, ., -0.47480.81100.9565yesno
P57885ORN_PASMU3, ., 1, ., -, ., -0.51380.82020.9673yesno
Q9Y3B8ORN_HUMAN3, ., 1, ., -, ., -0.51440.79720.7299yesno
Q9VCI0ORN_DROME3, ., 1, ., -, ., -0.48850.80180.8246yesno
A7FMY7ORN_YERP33, ., 1, ., -, ., -0.46280.80180.9613yesno
P45340ORN_HAEIN3, ., 1, ., -, ., -0.49160.82020.9780yesno
A5UBG1ORN_HAEIE3, ., 1, ., -, ., -0.49720.82020.9780yesno
Q6F805ORN_ACIAD3, ., 1, ., -, ., -0.46590.80640.9562yesno
Q9ZVE0ORN_ARATH3, ., 1, ., -, ., -0.6950.91700.8963yesno
A6VN13ORN_ACTSZ3, ., 1, ., -, ., -0.49430.80640.9615yesno
A4QGM5ORN_CORGB3, ., 1, ., -, ., -0.43750.88010.8721yesno
Q65SE1ORN_MANSM3, ., 1, ., -, ., -0.48860.80640.9408yesno
A2VE52ORN_BOVIN3, ., 1, ., -, ., -0.51440.79720.7299yesno
Q3IG97ORN_PSEHT3, ., 1, ., -, ., -0.46020.80640.9668yesno
Q66FC2ORN_YERPS3, ., 1, ., -, ., -0.46280.80180.9613yesno
A5UFF2ORN_HAEIG3, ., 1, ., -, ., -0.49720.82020.9780yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017340001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (190 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00026916001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (424 aa)
•  •    0.653
GSVIVG00002744001
SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (78 aa)
   •  • 0.631
GSVIVG00003824001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (946 aa)
      • 0.616
GSVIVG00020698001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (857 aa)
      • 0.608
GSVIVG00021705001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (441 aa)
•       0.581
GSVIVG00038542001
RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa)
      • 0.564
GSVIVG00037495001
SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (193 aa)
•       0.563
GSVIVG00016630001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (536 aa)
      • 0.554
GSVIVG00027727001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (367 aa)
•       0.549
GSVIVG00032399001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (228 aa)
      • 0.531

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
cd06135173 cd06135, Orn, DEDDh 3'-5' exonuclease domain of ol 2e-99
PRK05359181 PRK05359, PRK05359, oligoribonuclease; Provisional 3e-86
COG1949184 COG1949, Orn, Oligoribonuclease (3'->5' exoribonuc 4e-77
pfam00929161 pfam00929, RNase_T, Exonuclease 3e-30
smart00479169 smart00479, EXOIII, exonuclease domain in DNA-poly 7e-26
cd06127159 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam 3e-12
COG0847243 COG0847, DnaQ, DNA polymerase III, epsilon subunit 3e-06
PRK06309232 PRK06309, PRK06309, DNA polymerase III subunit eps 0.001
>gnl|CDD|99838 cd06135, Orn, DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information 
 Score =  285 bits (732), Expect = 2e-99
 Identities = 106/173 (61%), Positives = 122/173 (70%)

Query: 39  LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHE 98
           LVWIDLEMTGL  E DRILEIACIITDG L    EGP+LVIHQ  E LD M EWC   H 
Sbjct: 1   LVWIDLEMTGLDPEKDRILEIACIITDGDLNIIAEGPELVIHQPDEVLDGMDEWCTEMHT 60

Query: 99  ASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLF 158
            SGLT++V  S +T  +AE +++EF+KK V      LAGNSV+ D  FL KYMP+L    
Sbjct: 61  KSGLTERVRASTVTLAQAEAELLEFIKKYVPKGKSPLAGNSVHQDRRFLDKYMPELEEYL 120

Query: 159 SHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIF 211
            + ++DVSSIK L  RWYP  YRK P K+  HRALDDIRESI ELKYY+ENIF
Sbjct: 121 HYRILDVSSIKELARRWYPEIYRKAPKKKGTHRALDDIRESIAELKYYRENIF 173

Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling. Length = 173
>gnl|CDD|235429 PRK05359, PRK05359, oligoribonuclease; Provisional Back     alignment and domain information
>gnl|CDD|224860 COG1949, Orn, Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease Back     alignment and domain information
>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180524 PRK06309, PRK06309, DNA polymerase III subunit epsilon; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
PRK05359181 oligoribonuclease; Provisional 100.0
COG1949184 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA 100.0
cd06135173 Orn DEDDh 3'-5' exonuclease domain of oligoribonuc 100.0
KOG3242208 consensus Oligoribonuclease (3'->5' exoribonucleas 100.0
PRK09146239 DNA polymerase III subunit epsilon; Validated 100.0
PRK05711240 DNA polymerase III subunit epsilon; Provisional 100.0
PRK09145202 DNA polymerase III subunit epsilon; Validated 100.0
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 100.0
PRK07740244 hypothetical protein; Provisional 100.0
PRK07942232 DNA polymerase III subunit epsilon; Provisional 99.98
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 99.97
PRK08517257 DNA polymerase III subunit epsilon; Provisional 99.97
PRK06310250 DNA polymerase III subunit epsilon; Validated 99.97
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 99.97
PRK06063 313 DNA polymerase III subunit epsilon; Provisional 99.97
PRK06807 313 DNA polymerase III subunit epsilon; Validated 99.97
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 99.97
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 99.97
PRK05168211 ribonuclease T; Provisional 99.97
PRK06309232 DNA polymerase III subunit epsilon; Validated 99.97
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 99.97
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 99.97
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 99.97
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 99.96
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.96
PRK07883 557 hypothetical protein; Validated 99.96
PRK07748207 sporulation inhibitor KapD; Provisional 99.96
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 99.96
PRK05601 377 DNA polymerase III subunit epsilon; Validated 99.96
PRK06195 309 DNA polymerase III subunit epsilon; Validated 99.96
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.96
PRK07247195 DNA polymerase III subunit epsilon; Validated 99.96
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 99.96
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 99.96
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 99.95
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 99.95
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 99.95
PRK06722281 exonuclease; Provisional 99.95
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 99.95
PRK07983219 exodeoxyribonuclease X; Provisional 99.95
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 99.95
PRK11779 476 sbcB exonuclease I; Provisional 99.94
PRK09182294 DNA polymerase III subunit epsilon; Validated 99.94
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 99.94
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 99.93
PF00929164 RNase_T: Exonuclease; InterPro: IPR013520 This ent 99.92
PTZ00315 582 2'-phosphotransferase; Provisional 99.91
PRK00448 1437 polC DNA polymerase III PolC; Validated 99.9
COG2925 475 SbcB Exonuclease I [DNA replication, recombination 99.75
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 99.69
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 99.61
COG5018210 KapD Inhibitor of the KinA pathway to sporulation, 99.56
KOG0542280 consensus Predicted exonuclease [Replication, reco 99.47
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 99.36
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 99.3
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 99.29
PHA02570220 dexA exonuclease; Provisional 99.21
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 98.66
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 98.54
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 98.5
PRK05755 880 DNA polymerase I; Provisional 98.45
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 98.43
COG3359278 Predicted exonuclease [DNA replication, recombinat 98.28
KOG4793318 consensus Three prime repair exonuclease [Replicat 98.2
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 98.04
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 98.02
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 98.0
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 97.71
PF04857262 CAF1: CAF1 family ribonuclease; InterPro: IPR00694 97.69
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 97.54
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 97.52
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 97.5
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 97.49
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 97.37
cd05778231 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease 97.32
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 97.07
smart00486 471 POLBc DNA polymerase type-B family. DNA polymerase 96.92
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 96.36
PHA02528 881 43 DNA polymerase; Provisional 96.35
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 96.14
PRK05762 786 DNA polymerase II; Reviewed 95.75
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 95.67
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 95.48
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 95.43
PRK10829 373 ribonuclease D; Provisional 94.83
KOG0304239 consensus mRNA deadenylase subunit [RNA processing 94.72
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 94.47
COG5228299 POP2 mRNA deadenylase subunit [RNA processing and 94.36
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 93.91
KOG1798 2173 consensus DNA polymerase epsilon, catalytic subuni 93.11
COG0417 792 PolB DNA polymerase elongation subunit (family B) 92.07
cd05776234 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas 91.23
TIGR03491457 RecB family nuclease, putative, TM0106 family. Mem 90.99
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 90.3
KOG3657 1075 consensus Mitochondrial DNA polymerase gamma, cata 89.71
KOG0969 1066 consensus DNA polymerase delta, catalytic subunit 88.85
KOG4793318 consensus Three prime repair exonuclease [Replicat 86.99
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 85.38
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 85.23
PHA02563 630 DNA polymerase; Provisional 84.46
PHA02524 498 43A DNA polymerase subunit A; Provisional 83.92
PRK05761 787 DNA polymerase I; Reviewed 83.78
PHA03036 1004 DNA polymerase; Provisional 80.42
>PRK05359 oligoribonuclease; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.3e-41  Score=271.96  Aligned_cols=179  Identities=48%  Similarity=0.711  Sum_probs=160.7

Q ss_pred             CCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHHH
Q 027892           36 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTERE  115 (217)
Q Consensus        36 ~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~e  115 (217)
                      ..+|||+|+|||||+|.+|+|||||||+++++...+.+.|+.+|+|+..++..++.+++.+|.+||||+++++++|++.+
T Consensus         2 ~~~~vvlD~ETTGLdp~~d~IieIgaV~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ih~~tGIt~~~l~~~~~~~e   81 (181)
T PRK05359          2 EDNLIWIDLEMTGLDPERDRIIEIATIVTDADLNILAEGPVIAIHQSDEALAAMDEWNTRTHTRSGLIDRVRASTVSEAE   81 (181)
T ss_pred             CCcEEEEEeecCCCCCCCCeEEEEEEEEEcCCceEcccceEEEECCCHHHhhccChHHHHhcccccCcHHHHhcCCCHHH
Confidence            46899999999999999999999999988887666667899999999877666678888888889999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCCCCCCCCCChHHH
Q 027892          116 AEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDD  195 (217)
Q Consensus       116 ~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~l~~~~~H~Al~D  195 (217)
                      ++.+|++|++++++++.+++||||+.||..||++++++++.+++++.+|++++++++|+|+|.. .++++....|||++|
T Consensus        82 ~~~~~l~fl~~~~~~~~~~l~g~~v~FD~~FL~~~~~~~~~~l~~~~~Dv~tl~~l~r~~~P~~-~~~~~~~~~HRal~D  160 (181)
T PRK05359         82 AEAQTLEFLKQWVPAGKSPLCGNSIGQDRRFLARYMPELEAYFHYRNLDVSTLKELARRWKPEI-LNGFKKQGTHRALAD  160 (181)
T ss_pred             HHHHHHHHHHHhcCCCCCceeecchhhCHHHHHHHHHHhcccCCCcccchhHHHHHHHHhChhh-hhCCCCcCCcccHHH
Confidence            9999999998766554467899999999999999999999899999999988888999999975 346777889999999


Q ss_pred             HHHHHHHHHHHHHHhcccCC
Q 027892          196 IRESIMELKYYKENIFKTNL  215 (217)
Q Consensus       196 a~at~~ll~~~~~~~~~~~~  215 (217)
                      |+++++++++|++.+++.++
T Consensus       161 ~~~s~~~~~~~~~~~~~~~~  180 (181)
T PRK05359        161 IRESIAELKYYREHFFKLAP  180 (181)
T ss_pred             HHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999876

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information
>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PTZ00315 2'-phosphotransferase; Provisional Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only] Back     alignment and domain information
>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PHA02570 dexA exonuclease; Provisional Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>smart00486 POLBc DNA polymerase type-B family Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>KOG0304 consensus mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>TIGR03491 RecB family nuclease, putative, TM0106 family Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>PHA02563 DNA polymerase; Provisional Back     alignment and domain information
>PHA02524 43A DNA polymerase subunit A; Provisional Back     alignment and domain information
>PRK05761 DNA polymerase I; Reviewed Back     alignment and domain information
>PHA03036 DNA polymerase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
1j9a_A184 Oligoribonuclease Length = 184 8e-40
2igi_A180 Crystal Structure Of E. Coli Oligoribonuclease Leng 5e-38
1yta_A180 Crystal Structure Of Oligoribonuclease, The Lone Es 4e-35
3tr8_A186 Structure Of An Oligoribonuclease (Orn) From Coxiel 3e-34
2gbz_A194 The Crystal Structure Of Xc847 From Xanthomonas Cam 1e-33
>pdb|1J9A|A Chain A, Oligoribonuclease Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (403), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 1/179 (0%)
Query: 36  KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQN 95
           K  L+WIDLE TGL  E +RI+EIA I+TD  L    EGP L +HQ+ E L+   +WCQ 
Sbjct: 7   KQNLIWIDLEXTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKXNDWCQK 66
Query: 96  HHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLA 155
            H  +GL +++  S LTER AE Q ++F+KK V      + GNS+  D  FL KY PDLA
Sbjct: 67  THSENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYXPDLA 126
Query: 156 SLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTN 214
             F +  +DVS++K L  RW P        KE  H ALDDIRESI EL YY+E+  K +
Sbjct: 127 DYFHYRHLDVSTLKELAARWKPEILEGF-KKENTHLALDDIRESIKELAYYREHFXKLD 184
>pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease Length = 180 Back     alignment and structure
>pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli Length = 180 Back     alignment and structure
>pdb|3TR8|A Chain A, Structure Of An Oligoribonuclease (Orn) From Coxiella Burnetii Length = 186 Back     alignment and structure
>pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family With A Novel Opposingly-Shifted Helix Length = 194 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 5e-64
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 4e-63
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 8e-63
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 3e-07
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 1e-06
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 2e-06
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 3e-05
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 7e-05
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 4e-04
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Length = 194 Back     alignment and structure
 Score =  196 bits (498), Expect = 5e-64
 Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 1/175 (0%)

Query: 38  PLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHH 97
            L+WIDLEMTGL  + D I+EIA I+TD +L    EGP+L I  + E L++M EW +N H
Sbjct: 10  RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQH 69

Query: 98  EASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASL 157
             SGL ++VL S +T  +AE Q V F+ + +      + GNS+  D  FL + M  L   
Sbjct: 70  RRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERY 129

Query: 158 FSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 212
           F +  +DVS+IK L  RW P       +K   H AL D+R+SI EL++Y++ +  
Sbjct: 130 FHYRNLDVSTIKELARRWAPAVA-SGFAKSSAHTALSDVRDSIDELRHYRQFMGT 183
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Length = 180 Back     alignment and structure
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Length = 186 Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Length = 314 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Length = 242 Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Length = 235 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Length = 224 Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 100.0
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 100.0
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 100.0
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 100.0
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 99.98
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 99.98
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 99.97
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 99.97
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 99.97
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 99.97
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 99.97
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 99.96
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 99.96
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 99.96
2qxf_A 482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 99.96
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 99.96
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 99.95
4hec_A190 Putative uncharacterized protein; ssgcid, structur 99.44
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 99.03
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 98.69
4gmj_B285 CCR4-NOT transcription complex subunit 7; mRNA dec 98.23
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 98.08
2d5r_A252 CCR4-NOT transcription complex subunit 7; poly(A) 97.92
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 97.88
2p51_A333 SPCC18.06C protein; DEDD nuclease fold, hydrolase, 97.69
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 97.61
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 97.49
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 97.48
1uoc_A289 POP2; hydrolase, DEDD nuclease, mRNA degradation, 97.19
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 96.95
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 95.99
2py5_A 575 DNA polymerase; protein-DNA complex, replication, 95.93
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 95.85
3qex_A 903 DNA polymerase, GP43; difluorotoluene nucleoside; 95.32
3saf_A 428 Exosome component 10; exoribonuclease, RNA exosome 95.31
3d45_A 507 Poly(A)-specific ribonuclease PARN; CAP analogue, 92.36
2a1r_A430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 92.31
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 87.67
3ikm_A 1172 DNA polymerase subunit gamma-1; human mitochondria 84.5
1yt3_A 375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 80.93
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=2e-45  Score=296.59  Aligned_cols=180  Identities=43%  Similarity=0.682  Sum_probs=159.4

Q ss_pred             cCCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCH
Q 027892           34 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE  113 (217)
Q Consensus        34 ~~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~  113 (217)
                      +...+|||+|+|||||+|.+|+|||||||+.+++...+.+.++.+|+|+......+.+++..+|.+||||+++++++|++
T Consensus         6 ~~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~~   85 (186)
T 3tr8_A            6 FSDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDE   85 (186)
T ss_dssp             CCTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCCH
T ss_pred             CCCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCCH
Confidence            46679999999999999999999999999889877666666777898776554456678888889999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCCCCCCCCCChH
Q 027892          114 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRAL  193 (217)
Q Consensus       114 ~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~l~~~~~H~Al  193 (217)
                      ++|+++|++|++++++++.++|||||++||+.||++++++++.+++++.+|++++.+++|+|+|+..+ +++..++|||+
T Consensus        86 ~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~~~~-~~~~~~~HrAl  164 (186)
T 3tr8_A           86 VEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQIAA-AHIKESQHLAL  164 (186)
T ss_dssp             HHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHHHHT-TSCCCCCSCHH
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCccccc-cCCCCCCcChH
Confidence            99999999999877666667899999999999999999999988999999988886799999998764 67889999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccC
Q 027892          194 DDIRESIMELKYYKENIFKTN  214 (217)
Q Consensus       194 ~Da~at~~ll~~~~~~~~~~~  214 (217)
                      +||++|+++|+||++.+|+..
T Consensus       165 ~Da~ati~~l~~y~~~~~~~~  185 (186)
T 3tr8_A          165 QDIRDSIEELRYYRAHLLNLS  185 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTBCC-
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999864
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Back     alignment and structure
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 217
d2igia1180 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia 1e-46
d3b6oa1226 c.55.3.5 (A:9-234) Three prime repair exonuclease 1e-11
d1y97a1228 c.55.3.5 (A:1-228) Three prime repair exonuclease 3e-11
d2f96a1202 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas ae 3e-08
d2guia1174 c.55.3.5 (A:7-180) N-terminal exonuclease domain o 1e-07
d2qxfa1 467 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli 6e-07
d1w0ha_200 c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapien 5e-06
d1wlja_173 c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr 9e-05
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Length = 180 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

 Score =  150 bits (378), Expect = 1e-46
 Identities = 79/177 (44%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 36  KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQN 95
           +  L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W   
Sbjct: 4   ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVR 63

Query: 96  HHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLA 155
            H ASGL ++V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L 
Sbjct: 64  THTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELE 123

Query: 156 SLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 212
           + F +  +DVS++K L  RW P        K+  H+A+DDIRES+ EL YY+E+  K
Sbjct: 124 AYFHYRYLDVSTLKELARRWKPEILDGFT-KQGTHQAMDDIRESVAELAYYREHFIK 179
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226 Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Length = 467 Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d2igia1180 Oligoribonuclease {Escherichia coli [TaxId: 562]} 99.97
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 99.96
d2guia1174 N-terminal exonuclease domain of the epsilon subun 99.96
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 99.95
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 99.94
d2qxfa1 467 Exonuclease I {Escherichia coli K12 (Escherichia c 99.91
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 99.91
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 99.86
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 98.8
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 98.65
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 98.49
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 97.8
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 97.6
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 97.56
d1uoca_286 Pop2 RNase D domain {Baker's yeast (Saccharomyces 97.36
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 96.95
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 96.56
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 96.37
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 95.41
d1noya_372 Exonuclease domain of family B DNA polymerases {Ba 94.54
d1ih7a1375 Exonuclease domain of family B DNA polymerases {Ba 94.45
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.1e-31  Score=206.40  Aligned_cols=177  Identities=45%  Similarity=0.703  Sum_probs=138.5

Q ss_pred             CCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHH
Q 027892           35 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER  114 (217)
Q Consensus        35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~  114 (217)
                      ...++||+|+|||||+|.+|+|||||||+++.+.....+.....++|....+..............+..+......+..+
T Consensus         3 ~~~~lv~lD~ETTGLdp~~d~IIeIaaV~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T d2igia1           3 NENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDR   82 (180)
T ss_dssp             GGGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHH
T ss_pred             CCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCceEeeccceeeeeccccccccccccccccccccchhhhhccccccHH
Confidence            56899999999999999999999999998887766555555556666544332222222222355677777778888999


Q ss_pred             HHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCCCCCCCCCChHH
Q 027892          115 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALD  194 (217)
Q Consensus       115 e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~l~~~~~H~Al~  194 (217)
                      .+...+..+.......+..++++||+.||+.||.+.+.+.+..++++.+|+..+....+++.|... ++++..++||||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FD~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~aH~Al~  161 (180)
T d2igia1          83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEIL-DGFTKQGTHQAMD  161 (180)
T ss_dssp             HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGGGG-GGSCCCCCCCHHH
T ss_pred             HHHHHHHHHHhhhccCCCcEEEechhcchhHHHHHHhhhhcccCCCcEEeehhhHHHHhhcChHHh-cCCCCCCCcccHH
Confidence            999999988876544444568899999999999999988877788899999987766666665433 4678899999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 027892          195 DIRESIMELKYYKENIFK  212 (217)
Q Consensus       195 Da~at~~ll~~~~~~~~~  212 (217)
                      ||++|+++|++||++|++
T Consensus       162 Dv~~ti~~l~~yr~~~~~  179 (180)
T d2igia1         162 DIRESVAELAYYREHFIK  179 (180)
T ss_dssp             HHHHHHHHHHHHHHHTBC
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999999987
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure