Citrus Sinensis ID: 027909

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MEQNLFEPETGYATEEDASLKQKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF
cccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccHHHcccccccHHHHHHHHccccccccccccccccccccEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHEHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
meqnlfepetgyateedaslkqkwsptsaptnvpekddeqqqncpvckanisvaslvplygrggissasdskkpnlgevvpsrphpsalntsvtssststrhqtQQLHSdffqsqapafhnpqyfphhygshaalassslggmatisffnplmgmlggmtlerifggsttslftypsqsllvsnnprirRQEMELDKSLNRVSLFLFCCLVLCLLLF
meqnlfepetgyateedaslkqkwSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYGRGGIssasdskkpnlgevvpsrphpsalnTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF
MEQNLFEPETGYATEEDASLKQKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSALNtsvtssststRHQTQQLHSDFFQSQAPAFHNPQYFPhhygshaalassslggMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSlflfcclvlclllf
*******************************************CPVCKANISVASLVPLYGR********************************************************FHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVS***********LDKSLNRVSLFLFCCLVLCLLL*
***NLFEPETGYATEEDASLKQKWSPTSA***********QQNCPVCKANISVASLVPL***********************************************************************************MATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPS********************SLNRVSLFLFCCLVLCLLLF
*******************************************CPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVP**************************HSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF
*************TEEDASLKQKWSPTSA************QNCPVCKANISVASLVPLYGRG****************************************TQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
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MEQNLFEPETGYATEEDASLKQKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
Q6R567252 E3 ubiquitin-protein liga N/A no 0.801 0.690 0.421 2e-29
O64425249 E3 ubiquitin-protein liga yes no 0.746 0.650 0.360 4e-22
Q8GUK7243 E3 ubiquitin-protein liga no no 0.654 0.584 0.395 7e-22
P93030193 E3 ubiquitin-protein liga no no 0.658 0.740 0.303 1e-13
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1 Back     alignment and function desciption
 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 11/185 (5%)

Query: 35  EKDDEQQQNCPVCKANISVASLVPLYGRGGISSA-SDSKKPNLGEVVPSRPHPSALNTSV 93
           E  D+QQ  CPVCKA +S  +L+PLYGRGG S+  S+ K PNLG V+P RP PS      
Sbjct: 77  ENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRP-PSPRCGGH 135

Query: 94  TSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISFFNPLM 153
               T+  + +Q L    +Q Q+         P + GS+ +    S GG AT +      
Sbjct: 136 FLLPTTDSNPSQLLQRRGYQQQSQTRQ-----PAYQGSYMSSPMLSPGG-ATANMLQ--H 187

Query: 154 GMLGGMTLERIFGGSTTSLFTYP-SQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVL 212
            M+G +   RIFG S+T+++TYP S +L +S++PR+RRQ  + D+SL R+  FLFCC V 
Sbjct: 188 SMIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVT 247

Query: 213 CLLLF 217
           CL+LF
Sbjct: 248 CLILF 252
E3 ubiquitin-protein ligase required for aquaporin levels regulation.
Capsicum annuum (taxid: 4072)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1 Back     alignment and function description
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
449446936261 PREDICTED: E3 ubiquitin-protein ligase R 0.995 0.827 0.408 3e-43
449531287261 PREDICTED: E3 ubiquitin-protein ligase R 0.995 0.827 0.404 1e-42
225461411253 PREDICTED: E3 ubiquitin-protein ligase R 0.764 0.656 0.5 9e-42
255573345265 rnf5, putative [Ricinus communis] gi|223 0.912 0.747 0.402 1e-38
224128161228 predicted protein [Populus trichocarpa] 0.764 0.728 0.514 1e-38
224114956228 predicted protein [Populus trichocarpa] 0.815 0.776 0.502 6e-37
388507976248 unknown [Lotus japonicus] 0.746 0.653 0.508 7e-37
328929994250 MAKIBISHI 1 [Medicago truncatula] 0.880 0.764 0.389 2e-36
358249238246 uncharacterized protein LOC100817526 [Gl 0.732 0.646 0.463 1e-30
302143025308 unnamed protein product [Vitis vinifera] 0.566 0.399 0.434 4e-29
>gi|449446936|ref|XP_004141226.1| PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/262 (40%), Positives = 142/262 (54%), Gaps = 46/262 (17%)

Query: 1   MEQNLFEPETGYATEEDASLKQKWSPTSAPTNVPE------------------------- 35
           MEQN   PE    +E+D SLKQ W   S  + + E                         
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTQSTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 36  -----------------KDDEQQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNLGE 78
                             + E  QNCPVCKA+I+ +SLVPLYGRG  +S S+SKK +LG 
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 79  VVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHH-YGSHAALAS 137
            VP RP PS +NT   S+S+ST + +Q+LHS++ +S +   ++ QYFP   YG+ A+ + 
Sbjct: 121 AVPRRPPPS-MNTPSHSNSSSTLYPSQELHSNYIRSPSHPIYHQQYFPQATYGNFASYSP 179

Query: 138 SSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNP--RIRRQEMEL 195
           S LG     S  NP +GM G     RIFG    +L  Y   +  +S N   R+RRQEM+L
Sbjct: 180 SYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYSPYNNSISGNASTRMRRQEMQL 239

Query: 196 DKSLNRVSLFLFCCLVLCLLLF 217
           DKSLNRVS+FLFCC ++CLLLF
Sbjct: 240 DKSLNRVSIFLFCCFIICLLLF 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449531287|ref|XP_004172618.1| PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225461411|ref|XP_002282248.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573345|ref|XP_002527599.1| rnf5, putative [Ricinus communis] gi|223533016|gb|EEF34780.1| rnf5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224128161|ref|XP_002329096.1| predicted protein [Populus trichocarpa] gi|222869765|gb|EEF06896.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114956|ref|XP_002316902.1| predicted protein [Populus trichocarpa] gi|222859967|gb|EEE97514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388507976|gb|AFK42054.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|328929994|gb|AEB69786.1| MAKIBISHI 1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|358249238|ref|NP_001240271.1| uncharacterized protein LOC100817526 [Glycine max] gi|255640217|gb|ACU20399.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|302143025|emb|CBI20320.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
UNIPROTKB|Q6R567252 RMA1H1 "E3 ubiquitin-protein l 0.732 0.630 0.370 7e-22
TAIR|locus:2124004243 RMA3 "RING membrane-anchor 3" 0.617 0.551 0.385 9.5e-18
TAIR|locus:2128746249 RMA1 "RING membrane-anchor 1" 0.400 0.349 0.309 5.7e-12
TAIR|locus:2123663193 RMA2 "RING membrane-anchor 2" 0.253 0.284 0.415 2.7e-10
TAIR|locus:2037294137 AT1G74990 [Arabidopsis thalian 0.317 0.503 0.386 1e-05
TAIR|locus:2016437226 AT1G19310 [Arabidopsis thalian 0.202 0.194 0.555 1.4e-05
UNIPROTKB|E9PN0891 RNF5 "E3 ubiquitin-protein lig 0.110 0.263 0.666 0.00035
UNIPROTKB|F1NHH0117 RNF185 "E3 ubiquitin-protein l 0.207 0.384 0.413 0.00046
TAIR|locus:2049023227 AT2G23780 [Arabidopsis thalian 0.188 0.180 0.5 0.00054
DICTYBASE|DDB_G0285333281 DDB_G0285333 "RING finger prot 0.179 0.138 0.488 0.00078
UNIPROTKB|Q6R567 RMA1H1 "E3 ubiquitin-protein ligase RMA1H1" [Capsicum annuum (taxid:4072)] Back     alignment and assigned GO terms
 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 63/170 (37%), Positives = 88/170 (51%)

Query:    35 EKDDEQQQNCPVCKANISVASLVPLYGRGGISSA-SDSKKPNLGEVVPSRPHPSALNXXX 93
             E  D+QQ  CPVCKA +S  +L+PLYGRGG S+  S+ K PNLG V+P RP PS      
Sbjct:    77 ENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRP-PSPRCGGH 135

Query:    94 XXXXXXXRHQTQQLHSDFFQSQAPAFHNPQYFPXXXXXXXXXXXXXXXXMATISFFNPLM 153
                     + +Q L    +Q Q+     P Y                  M   S      
Sbjct:   136 FLLPTTDSNPSQLLQRRGYQQQSQT-RQPAYQGSYMSSPMLSPGGATANMLQHS------ 188

Query:   154 GMLGGMTLERIFGGSTTSLFTYP-SQSLLVSNNPRIRRQEMELDKSLNRV 202
              M+G +   RIFG S+T+++TYP S +L +S++PR+RRQ  + D+SL R+
Sbjct:   189 -MIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLGRI 237
GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=IEP
GO:0009409 "response to cold" evidence=IEP
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009611 "response to wounding" evidence=IEP
GO:0009723 "response to ethylene stimulus" evidence=IEP
GO:0016567 "protein ubiquitination" evidence=IDA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA
TAIR|locus:2124004 RMA3 "RING membrane-anchor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128746 RMA1 "RING membrane-anchor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123663 RMA2 "RING membrane-anchor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037294 AT1G74990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016437 AT1G19310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E9PN08 RNF5 "E3 ubiquitin-protein ligase RNF5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHH0 RNF185 "E3 ubiquitin-protein ligase RNF185" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2049023 AT2G23780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285333 DDB_G0285333 "RING finger protein 185" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.107.139.1
hypothetical protein (228 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
PLN03208193 PLN03208, PLN03208, E3 ubiquitin-protein ligase RM 9e-18
>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information 
 Score = 77.4 bits (190), Expect = 9e-18
 Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 58/201 (28%)

Query: 22  QKWSPTSAPTNVPEKDDE-----QQQNCPVCKANISVASLVPLYGRGGISSASDSKKPNL 76
            KW  T A  N  ++ D+     +   CPVCK+++S A+LVP+YGRG        K P  
Sbjct: 46  HKW--TYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG-------QKAPQS 96

Query: 77  GEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALA 136
           G  VPSRP         +      R   Q+L     +SQ   +  P              
Sbjct: 97  GSNVPSRP---------SGPVYDLRGVGQRLGEG--ESQRYMYRMP-------------- 131

Query: 137 SSSLGGMATISFFNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELD 196
                        +P+MG++  M   R+FG S++++  Y         N R RR+ M+ +
Sbjct: 132 -------------DPVMGVVCEMVYRRLFGESSSNMAPYRDM------NVRSRRRAMQAE 172

Query: 197 KSLNRVSLFLFCCLVLCLLLF 217
           +SL+RV LFL C + +CL LF
Sbjct: 173 ESLSRVYLFLLCFMFMCLFLF 193

Length = 193

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 100.0
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.86
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.5
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.35
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.31
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.06
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.01
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.83
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 96.77
PHA02926242 zinc finger-like protein; Provisional 96.59
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 96.49
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 96.43
PF1463444 zf-RING_5: zinc-RING finger domain 96.31
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 95.77
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 95.47
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 94.88
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 94.3
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 93.94
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 93.78
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 93.74
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 93.34
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 92.6
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 91.92
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 91.66
KOG1002791 consensus Nucleotide excision repair protein RAD16 91.42
PHA02929238 N1R/p28-like protein; Provisional 90.24
KOG4362 684 consensus Transcriptional regulator BRCA1 [Replica 89.82
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 87.23
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 86.69
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 85.77
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 84.6
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 82.36
TIGR0129452 P_lamban phospholamban. This model represents the 80.19
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 80.11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-53  Score=365.24  Aligned_cols=164  Identities=34%  Similarity=0.640  Sum_probs=136.2

Q ss_pred             CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCC---------CcCCCCCCCccccccccceeeeecCCCCCCC
Q 027909            3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKD---------DEQQQNCPVCKANISVASLVPLYGRGGISSA   68 (217)
Q Consensus         3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~---------~~~~~~CPVCKa~Vs~~~viPLYGRG~~~~~   68 (217)
                      ++.|+|+||+|..+|||||     |||.||..|+...++.         ..+...|||||+.|+.+++|||||||...  
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~~--   93 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQKA--   93 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCCC--
Confidence            5679999999999999999     9999999997643211         23457999999999999999999999843  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcccccCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCCccccccCCCcchhhc
Q 027909           69 SDSKKPNLGEVVPSRPHPSALNTSVTSSSTSTRHQTQQLHSDFFQSQAPAFHNPQYFPHHYGSHAALASSSLGGMATISF  148 (217)
Q Consensus        69 ~~~k~~~~g~~IPpRP~~~R~es~~~~~~~~~~~~~~q~~~n~~~~~~~p~~~~~~~~~~y~~~~~~p~~~~gg~~~~~~  148 (217)
                           .+.+.+||+||+++|.++         ++..++++      ++   ++|+|+                   + ++
T Consensus        94 -----~~~~~~iP~rp~~~~~~~---------~~~~~~~~------~~---~~~~~~-------------------~-~~  130 (193)
T PLN03208         94 -----PQSGSNVPSRPSGPVYDL---------RGVGQRLG------EG---ESQRYM-------------------Y-RM  130 (193)
T ss_pred             -----CCCCCCCCcCCCCCccCC---------CCcccccc------cc---ccceee-------------------e-cc
Confidence                 345678999999998773         23334441      11   233332                   1 37


Q ss_pred             ccccccccccceeccccCCCCCCCCCCCCCCCCCCCChhhhhhhhHHHHhhhhHHHHHHHHHHHHHhhC
Q 027909          149 FNPLMGMLGGMTLERIFGGSTTSLFTYPSQSLLVSNNPRIRRQEMELDKSLNRVSLFLFCCLVLCLLLF  217 (217)
Q Consensus       149 ~~~~~Gmfgemv~~rvFG~~~~~~~~~p~~~~~g~~spR~Rrq~mq~d~sL~ri~~Fl~ccvvLCLllF  217 (217)
                      +.|++||||||||+||||++.+|+|+|||+      +||||||+||+|||||||+|||||||+||||||
T Consensus       131 ~~p~~g~~~~~~~~r~fg~~~~~~~~~~~~------~~r~r~~~~q~~~sl~r~~~f~~c~~~~~~~~f  193 (193)
T PLN03208        131 PDPVMGVVCEMVYRRLFGESSSNMAPYRDM------NVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF  193 (193)
T ss_pred             CCccccchhhhhhhhhhCCccccccccccC------chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhC
Confidence            889999999999999999999999999996      899999999999999999999999999999998

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01294 P_lamban phospholamban Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.64
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.6
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.46
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.46
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.44
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.43
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.39
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.34
2ect_A78 Ring finger protein 126; metal binding protein, st 98.34
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.33
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.31
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.29
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.29
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.28
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.27
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.22
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.21
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.2
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.16
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.14
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.13
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.11
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.07
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.05
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 98.04
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 98.02
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.01
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.0
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 98.0
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.0
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 97.98
2ecm_A55 Ring finger and CHY zinc finger domain- containing 97.97
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 97.96
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 97.96
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 97.95
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 97.94
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 97.94
1z6u_A150 NP95-like ring finger protein isoform B; structura 97.88
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 97.87
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 97.86
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 97.86
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 97.84
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 97.82
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 97.77
2ysj_A63 Tripartite motif-containing protein 31; ring-type 97.75
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 97.75
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 97.7
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 97.69
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 97.69
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 97.65
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 97.63
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.61
2ea5_A68 Cell growth regulator with ring finger domain prot 97.55
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 97.42
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.4
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.34
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 97.34
2f42_A179 STIP1 homology and U-box containing protein 1; cha 97.32
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 97.25
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 96.79
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 96.45
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 96.32
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 96.31
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 96.1
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 95.69
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 93.64
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 93.47
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 93.34
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 92.38
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
Probab=98.64  E-value=6.7e-10  Score=75.19  Aligned_cols=51  Identities=12%  Similarity=0.203  Sum_probs=44.3

Q ss_pred             CCCCccccccCCCCCc-------ceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909            3 QNLFEPETGYATEEDA-------SLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY   60 (217)
Q Consensus         3 ~s~FeCnICld~A~dp-------VVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY   60 (217)
                      ++.++|.||+|.-++|       +++     ||..||.+|+.       ....||+|+..++.+.++|||
T Consensus         1 g~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-------NANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-------HCSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-------cCCCCCCCCccCCccceeeee
Confidence            4678999999988776       555     99999999964       357999999999999999998
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.7
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.43
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.35
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.29
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.29
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.21
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.19
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.14
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.14
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.02
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.97
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.72
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.39
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 96.9
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 96.46
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.07
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=2.5e-10  Score=76.81  Aligned_cols=46  Identities=13%  Similarity=0.096  Sum_probs=42.3

Q ss_pred             cccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909            8 PETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY   60 (217)
Q Consensus         8 CnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY   60 (217)
                      |.||+|.-+|||++      ||+.||.+|+.       ++..||+|+..++.++||||.
T Consensus         3 C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~-------~~~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-------DTGNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-------HHSBCTTTCCBCCGGGCEECC
T ss_pred             CccCCchHHhcCccCCCCCcccHHHHHHHHh-------hccCCCccCCcCCHHhceeCC
Confidence            99999999999986      99999999975       457899999999999999984
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure