Citrus Sinensis ID: 027912
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| 255552219 | 302 | conserved hypothetical protein [Ricinus | 0.976 | 0.701 | 0.896 | 4e-96 | |
| 388517845 | 274 | unknown [Medicago truncatula] | 0.981 | 0.777 | 0.863 | 1e-93 | |
| 388490712 | 274 | unknown [Medicago truncatula] | 0.981 | 0.777 | 0.821 | 2e-93 | |
| 225432530 | 274 | PREDICTED: TVP38/TMEM64 family membrane | 0.981 | 0.777 | 0.849 | 1e-92 | |
| 224107213 | 275 | predicted protein [Populus trichocarpa] | 0.976 | 0.770 | 0.863 | 1e-92 | |
| 449466368 | 275 | PREDICTED: TVP38/TMEM64 family membrane | 0.981 | 0.774 | 0.873 | 1e-90 | |
| 30687125 | 280 | SNARE associated Golgi family protein [A | 0.981 | 0.760 | 0.812 | 1e-89 | |
| 297807947 | 280 | hypothetical protein ARALYDRAFT_488790 [ | 0.981 | 0.760 | 0.807 | 3e-89 | |
| 224100323 | 275 | predicted protein [Populus trichocarpa] | 0.930 | 0.734 | 0.871 | 7e-89 | |
| 356555618 | 274 | PREDICTED: TVP38/TMEM64 family membrane | 0.981 | 0.777 | 0.859 | 9e-88 |
| >gi|255552219|ref|XP_002517154.1| conserved hypothetical protein [Ricinus communis] gi|223543789|gb|EEF45317.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 190/212 (89%), Positives = 201/212 (94%)
Query: 2 AFTWGSALRITLLILLVAAVVTACFTLPVEKILKDFLTWVDQDLGPWGPLVLAVAYIPLT 61
+ TWGSALRITLL LL+AAVV ACFTLPVEKILKDFL WV+QDLGPWGPLVLAVAYIPLT
Sbjct: 30 SMTWGSALRITLLFLLIAAVVVACFTLPVEKILKDFLLWVEQDLGPWGPLVLAVAYIPLT 89
Query: 62 ILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 121
+LAVPASVLTLGGGYLFGLPVGFVADSIGAT+GAGAAFLLGRTIG+ FVISKLKDYPQFR
Sbjct: 90 VLAVPASVLTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGRSFVISKLKDYPQFR 149
Query: 122 SVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYV 181
SVA+AIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPL EYMLASWIGMMPITLALVYV
Sbjct: 150 SVAIAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLGEYMLASWIGMMPITLALVYV 209
Query: 182 GTTLKDLSDVTHGWNEFSKTRWAFLIFGLVVS 213
GTTLKDLSDVTHGW++FS TRW ++ G VVS
Sbjct: 210 GTTLKDLSDVTHGWSKFSTTRWVCIVLGFVVS 241
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388517845|gb|AFK46984.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388490712|gb|AFK33422.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225432530|ref|XP_002280327.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Vitis vinifera] gi|297736982|emb|CBI26183.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224107213|ref|XP_002314410.1| predicted protein [Populus trichocarpa] gi|222863450|gb|EEF00581.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449466368|ref|XP_004150898.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Cucumis sativus] gi|449524669|ref|XP_004169344.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30687125|ref|NP_197408.2| SNARE associated Golgi family protein [Arabidopsis thaliana] gi|50201959|gb|AAT70495.1| At5g19070 [Arabidopsis thaliana] gi|58331785|gb|AAW70390.1| At5g19070 [Arabidopsis thaliana] gi|110737737|dbj|BAF00807.1| hypothetical protein [Arabidopsis thaliana] gi|332005265|gb|AED92648.1| SNARE associated Golgi family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297807947|ref|XP_002871857.1| hypothetical protein ARALYDRAFT_488790 [Arabidopsis lyrata subsp. lyrata] gi|297317694|gb|EFH48116.1| hypothetical protein ARALYDRAFT_488790 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|224100323|ref|XP_002311831.1| predicted protein [Populus trichocarpa] gi|222851651|gb|EEE89198.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356555618|ref|XP_003546127.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| TAIR|locus:2179654 | 280 | AT5G19070 [Arabidopsis thalian | 0.981 | 0.760 | 0.718 | 3.7e-80 | |
| TAIR|locus:2014530 | 274 | AT1G03260 [Arabidopsis thalian | 0.857 | 0.678 | 0.709 | 2.7e-68 | |
| TAIR|locus:2017769 | 344 | AT1G22850 "AT1G22850" [Arabido | 0.700 | 0.441 | 0.320 | 4.8e-18 | |
| UNIPROTKB|Q9KRB9 | 229 | VC_1723 "Putative uncharacteri | 0.746 | 0.707 | 0.293 | 4.4e-13 | |
| TIGR_CMR|VC_1723 | 229 | VC_1723 "membrane protein, put | 0.746 | 0.707 | 0.293 | 4.4e-13 | |
| MGI|MGI:2140359 | 381 | Tmem64 "transmembrane protein | 0.751 | 0.427 | 0.281 | 2.5e-12 | |
| ZFIN|ZDB-GENE-060503-182 | 348 | tmem64 "transmembrane protein | 0.764 | 0.477 | 0.289 | 4.2e-12 | |
| UNIPROTKB|Q6YI46 | 380 | TMEM64 "Transmembrane protein | 0.751 | 0.428 | 0.270 | 2.4e-11 | |
| UNIPROTKB|Q0C554 | 250 | HNE_0409 "Putative membrane pr | 0.594 | 0.516 | 0.308 | 2.5e-11 | |
| TAIR|locus:2056246 | 320 | AT2G02370 "AT2G02370" [Arabido | 0.838 | 0.568 | 0.251 | 1.5e-10 |
| TAIR|locus:2179654 AT5G19070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 153/213 (71%), Positives = 173/213 (81%)
Query: 1 MAFTWGSXXXXXXXXXXXXXXXXXCFTLPVEKILKDFLTWVDQDLGPWGPLVLAVAYIPL 60
MAFTWGS C+ LPVEK+LKDFL WV+QDLGPWGP LAVAYIPL
Sbjct: 1 MAFTWGSALRISVLLILVAAIVLACYFLPVEKLLKDFLLWVEQDLGPWGPFALAVAYIPL 60
Query: 61 TILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQF 120
T+LAVPASVLTLGGGYLFGLP+GFVADS+GAT+G+GAAFLLGRTIGKPFV++KLKDYPQF
Sbjct: 61 TVLAVPASVLTLGGGYLFGLPIGFVADSVGATLGSGAAFLLGRTIGKPFVVAKLKDYPQF 120
Query: 121 RSVALAIQRSGFKIXXXXXXXXXXXFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVY 180
+SVALAI++SGFKI F+MLNYLLSVTP+ L Y+L+SW+GMMPITLALVY
Sbjct: 121 QSVALAIEKSGFKICLLLRLAPLLPFSMLNYLLSVTPIRLGPYLLSSWLGMMPITLALVY 180
Query: 181 VGTTLKDLSDVTHGWNEFSKTRWAFLIFGLVVS 213
VGTTLKDLSDVTH W+EFS RWAFLI LV+S
Sbjct: 181 VGTTLKDLSDVTHKWSEFSPGRWAFLISSLVIS 213
|
|
| TAIR|locus:2014530 AT1G03260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2017769 AT1G22850 "AT1G22850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KRB9 VC_1723 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_1723 VC_1723 "membrane protein, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| MGI|MGI:2140359 Tmem64 "transmembrane protein 64" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060503-182 tmem64 "transmembrane protein 64" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6YI46 TMEM64 "Transmembrane protein 64" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0C554 HNE_0409 "Putative membrane protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056246 AT2G02370 "AT2G02370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00019902001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (274 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 217 | |||
| COG0398 | 223 | COG0398, COG0398, Uncharacterized conserved protei | 2e-25 | |
| pfam09335 | 123 | pfam09335, SNARE_assoc, SNARE associated Golgi pro | 3e-19 |
| >gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-25
Identities = 54/183 (29%), Positives = 100/183 (54%), Gaps = 3/183 (1%)
Query: 7 SALRITLLILLVAAVVTACFTLPVEKILKDFLTWVDQDLGPWGPLVLAVA-YIPLTILAV 65
L L + ++ ++ + + + W+ G GPLV + Y+ T+ +
Sbjct: 9 KLLAALLFLGVIIGIIYLGLLVLLL-DPETLREWIQA-YGALGPLVFFILLYLVATLPII 66
Query: 66 PASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVAL 125
P S+LTL GG LFG +GF+ IGAT G+ AFLL R +G+ +V+ + + + +
Sbjct: 67 PGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVGGKEKVQRIDA 126
Query: 126 AIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTL 185
++R+GF +LLLRL+P+ PF+++NY +T + ++ +A+ +G +P T+ Y+G+
Sbjct: 127 GLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSAF 186
Query: 186 KDL 188
+
Sbjct: 187 LGI 189
|
Length = 223 |
| >gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| COG0398 | 223 | Uncharacterized conserved protein [Function unknow | 99.97 | |
| COG0586 | 208 | DedA Uncharacterized membrane-associated protein [ | 99.93 | |
| PRK10847 | 219 | hypothetical protein; Provisional | 99.91 | |
| PF09335 | 123 | SNARE_assoc: SNARE associated Golgi protein; Inter | 99.91 | |
| COG1238 | 161 | Predicted membrane protein [Function unknown] | 99.74 | |
| KOG3140 | 275 | consensus Predicted membrane protein [Function unk | 99.46 | |
| PF06695 | 121 | Sm_multidrug_ex: Putative small multi-drug export | 97.77 | |
| PRK00523 | 72 | hypothetical protein; Provisional | 83.36 | |
| PRK01844 | 72 | hypothetical protein; Provisional | 82.99 | |
| COG2426 | 142 | Predicted membrane protein [Function unknown] | 80.15 |
| >COG0398 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=203.39 Aligned_cols=154 Identities=34% Similarity=0.699 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHhccCChHHHH-HHHHHHHHhhhccChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 027912 30 VEKILKDFLTWVDQDLGPWGPLV-LAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKP 108 (217)
Q Consensus 30 ~~~~l~~l~~~~~~~~g~~~~~~-~~~~~~~~~~~~iP~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~ 108 (217)
.++..+++++|++ +++.++++. +++......++++|.+++.+.+|+.||+++|.+++++|+++|++++|+++|+++++
T Consensus 31 ~~~~~~~l~~~i~-~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~ 109 (223)
T COG0398 31 LLLDPETLREWIQ-AYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD 109 (223)
T ss_pred hccCHHHHHHHHH-HcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3556788999999 799999999 45555555566699999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHhcccHHHHHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhh
Q 027912 109 FVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTT 184 (217)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~ 184 (217)
..+++.+++++.++++++.+|+|++.+++.|++|++|++++|+++|.+++++++|.+++.+|+.|.++.|+++|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~ 185 (223)
T COG0398 110 WVLKFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185 (223)
T ss_pred HHHHHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9988888889999999999999999999999999999999999999999999999999999999999999999973
|
|
| >COG0586 DedA Uncharacterized membrane-associated protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK10847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins | Back alignment and domain information |
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| >COG1238 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >KOG3140 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins | Back alignment and domain information |
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| >PRK00523 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK01844 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG2426 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00