Citrus Sinensis ID: 027925

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEECSRSP
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccHHHHHccccccccccEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccEEEEEEEcccccccccEEEEEccccccccccccccccHccccccEEEEcccEEEEEEccccccccHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgsnmrticrphmvFTSLISCRDQARSFIkvsfrspnyrprlsswfgfrelnrteswfrvNQRRTVVSaanwadekspyetlelerDADEEQIKVAYRRLAkfyhpdvydgrgtlekgeTAEAKFIKIQAAYELLIDEERRRQydmdnrvnpmkASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEECSRSP
Flexible Loop (DISEMBL)
mgsnmrticrphmVFTSLISCRDQARSFikvsfrspnyrprlsswfgfrelnrteswfrvnqrrtvvsaanwadekspyetlelerdadEEQIKVAYRrlakfyhpdvydgrgtlekgetaeaKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRarrlsrskvsnnfefsaveecsrsp
Low Complexity Region (SEG)
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEECSRSP
Disordered region (IsUnstruct)
******TICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADE***************EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERR**Y********MKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLEL****************************
Disordered Region (DISOPRED)
*********RPHMVFTS*******************NYRPRLSSWF**************************ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG********EAKFIKIQAAYELLIDEERRRQYDMDNRVN**************KRKAFDQRGDMAIAAW***********************FEFSA*EE*****
Disordered Region (DISEMBL)
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEF**********
Disordered Region (DISPRO)
***NMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEEC****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPxxxxxxxxxxxxxxxxxxxxxLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEECSRSP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
B0S1F7	372	Chaperone protein DnaJ OS	yes	no	0.299	0.174	0.492	2e-11
A7NS65	370	Chaperone protein DnaJ OS	yes	no	0.322	0.189	0.454	2e-10
A5UYW4	370	Chaperone protein DnaJ OS	yes	no	0.322	0.189	0.454	2e-10
Q75VW3	356	Chaperone protein DnaJ OS	yes	no	0.359	0.219	0.423	2e-10
B8I304	379	Chaperone protein DnaJ OS	yes	no	0.313	0.179	0.445	3e-10
A4XKA5	387	Chaperone protein DnaJ OS	yes	no	0.313	0.175	0.5	3e-10
A9VHU0	368	Chaperone protein DnaJ OS	yes	no	0.308	0.182	0.472	3e-10
C4Z1J3	375	Chaperone protein DnaJ OS	yes	no	0.313	0.181	0.472	4e-10
P94319	377	Chaperone protein DnaJ OS	yes	no	0.281	0.161	0.477	5e-10
B9MJZ0	388	Chaperone protein DnaJ OS	yes	no	0.313	0.175	0.5	6e-10

>sp|B0S1F7|DNAJ_FINM2 Chaperone protein DnaJ OS=Finegoldia magna (strain ATCC 29328) GN=dnaJ PE=3 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 6/71 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K+ YE LE+  +A +E+IK +YRRLAK YHPD+  G         AE KF +I  AYE+L
Sbjct: 2   KNLYEILEVNENATQEEIKKSYRRLAKKYHPDINSGD------SEAENKFKEINGAYEVL 55

Query: 136 IDEERRRQYDM 146
            D+E+R++YDM
Sbjct: 56  GDKEKRKKYDM 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Finegoldia magna (strain ATCC 29328) (taxid: 334413)

>sp|A7NS65|DNAJ_ROSCS Chaperone protein DnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++R+A +++IK A+RRLA+ YHPDV        K   AEAKF +I  AYE+L D 
Sbjct: 8   YEVLGVQRNASQDEIKKAFRRLARQYHPDV-------NKAPDAEAKFKEINEAYEVLSDP 60

Query: 139 ERRRQYDMDNRVNPMKA 155
           E+R  YD      P  A
Sbjct: 61  EKRSMYDRFGHAGPTAA 77

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372)

>sp|A5UYW4|DNAJ_ROSS1 Chaperone protein DnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++R+A +++IK A+RRLA+ YHPDV        K   AEAKF +I  AYE+L D 
Sbjct: 8   YEVLGVQRNASQDEIKKAFRRLARQYHPDV-------NKAPDAEAKFKEINEAYEVLSDP 60

Query: 139 ERRRQYDMDNRVNPMKA 155
           E+R  YD      P  A
Sbjct: 61  EKRSMYDRFGHAGPTAA 77

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Roseiflexus sp. (strain RS-1) (taxid: 357808)

>sp|Q75VW3|DNAJ_HYDTT Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + +DA  E+IK AYRRLAK YHPD+          E A  KF +I  AY +L DE
Sbjct: 7   YQILGVSKDATAEEIKKAYRRLAKEYHPDI-------SADENASEKFKEINEAYHILSDE 59

Query: 139 ERRRQYDMDNRVNPMKASQAWMEWL 163
           ERR++YD   +    K+ + +ME++
Sbjct: 60  ERRKEYDRILKSGDEKSYRDFMEYI 84

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) (taxid: 608538)

>sp|B8I304|DNAJ_CLOCE Chaperone protein DnaJ OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dnaJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 6/74 (8%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
            AD++  YE L ++++A + ++K AYR LAK YHPDV  G        TAEAKF ++  A
Sbjct: 1   MADKRDYYEVLGVDKNASDAELKKAYRNLAKKYHPDVNPGD------TTAEAKFKEVNEA 54

Query: 132 YELLIDEERRRQYD 145
           YE+L D ++R +YD
Sbjct: 55  YEILSDSQKRSRYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) (taxid: 394503)

>sp|A4XKA5|DNAJ_CALS8 Chaperone protein DnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 6/74 (8%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
            A +K  YE L + R+A +E+IK AYRRLAK YHPD   G       + AE KF +I  A
Sbjct: 1   MAQKKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGN------KEAEEKFKEINEA 54

Query: 132 YELLIDEERRRQYD 145
           YE+L D E+RR+YD
Sbjct: 55  YEVLSDPEKRRKYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

>sp|A9VHU0|DNAJ_BACWK Chaperone protein DnaJ OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 7/74 (9%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L L + A +++IK AYRRLAK YHPDV        K E A  KF ++Q AYE+L D+
Sbjct: 7   YEVLGLSQGASKDEIKKAYRRLAKKYHPDV-------SKEENAIEKFKEVQEAYEVLSDD 59

Query: 139 ERRRQYDMDNRVNP 152
           ++R QYD      P
Sbjct: 60  QKRAQYDQFGHAGP 73

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus weihenstephanensis (strain KBAB4) (taxid: 315730)

>sp|C4Z1J3|DNAJ_EUBE2 Chaperone protein DnaJ OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dnaJ PE=3 SV=1

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
            AD++  YE L + +DAD+  IK AYR+LAK YHPD+  G       + AE KF +   A
Sbjct: 1   MADKRDYYEVLGVPKDADDAAIKKAYRQLAKKYHPDMNPGD------KEAEIKFKEASEA 54

Query: 132 YELLIDEERRRQYD 145
           Y +L D E+RRQYD
Sbjct: 55  YAVLSDAEKRRQYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Eubacterium eligens (strain ATCC 27750 / VPI C15-48) (taxid: 515620)

>sp|P94319|DNAJ_BRAJA Chaperone protein DnaJ OS=Bradyrhizobium japonicum (strain USDA 110) GN=dnaJ PE=3 SV=1

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YETLE+ERDADE ++K ++R+LA  +HPD   G       +T+E KF +I  AYE+L D+
Sbjct: 10  YETLEVERDADESKLKSSFRKLAMKFHPDRNPGD------DTSEVKFKEINEAYEVLKDK 63

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 64  DKRAAYD 70

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

>sp|B9MJZ0|DNAJ_CALBD Chaperone protein DnaJ OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
            A +K  YE L + R+A EE+IK AYRRLAK YHPD   G       + AE KF +I  A
Sbjct: 1   MAQKKDYYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGN------KEAEEKFKEINEA 54

Query: 132 YELLIDEERRRQYD 145
           YE+L D E+R+ YD
Sbjct: 55  YEVLSDPEKRKLYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
388516749	268	unknown [Lotus japonicus]	0.903	0.731	0.767	1e-82
297839657	272	hypothetical protein ARALYDRAFT_476957 [	0.917	0.731	0.735	5e-82
225459417	272	PREDICTED: uncharacterized protein LOC10	0.898	0.716	0.740	5e-82
356515831	268	PREDICTED: uncharacterized protein LOC10	0.903	0.731	0.776	8e-82
18411751	271	chaperone DnaJ-domain-containing protein	0.912	0.730	0.72	2e-80
224066897	276	predicted protein [Populus trichocarpa]	0.921	0.724	0.701	5e-76
449511575	271	PREDICTED: uncharacterized LOC101214898	0.912	0.730	0.714	4e-75
255545582	256	chaperone protein DNAj, putative [Ricinu	0.847	0.718	0.772	2e-72
388491678	271	unknown [Medicago truncatula]	0.903	0.723	0.684	2e-72
449458087	268	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.898	0.727	0.699	2e-71

>gi|388516749|gb|AFK46436.1| unknown [Lotus japonicus]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/202 (76%), Positives = 172/202 (85%), Gaps = 6/202 (2%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFREL---NRTESWFR 59
           SN+RT+CR H VF S ISCR Q RS  +  FR+PN++P L S   +      +RT  WFR
Sbjct: 2   SNLRTLCRSHTVF-SFISCRHQFRS--RALFRNPNWKPSLQSPSLYSTCLGSSRTVPWFR 58

Query: 60  VNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGE 119
           VNQRRTV  A+ W +EKSPYETLELERDADEEQIK+AYRRLAKFYHPDVYDGRGTLE+GE
Sbjct: 59  VNQRRTVTKASKWDEEKSPYETLELERDADEEQIKIAYRRLAKFYHPDVYDGRGTLEEGE 118

Query: 120 TAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIA 179
           TAEA+FIKIQAAYELLIDEE RR+YDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIA
Sbjct: 119 TAEARFIKIQAAYELLIDEETRRKYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIA 178

Query: 180 AWAEQQQLELNLRARRLSRSKV 201
           AWAEQQQ ELN+R R+LSRSK+
Sbjct: 179 AWAEQQQRELNIRVRQLSRSKI 200

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839657|ref|XP_002887710.1| hypothetical protein ARALYDRAFT_476957 [Arabidopsis lyrata subsp. lyrata] gi|297333551|gb|EFH63969.1| hypothetical protein ARALYDRAFT_476957 [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 147/200 (73%), Positives = 176/200 (88%), Gaps = 1/200 (0%)

Query: 3   SNMRTICRPHMVFTSLISC-RDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVN 61
           SN+R I RPH VF+S++ C R Q+RS  +VS ++  +R R+S+   FR    +   FR+N
Sbjct: 2   SNLRAIGRPHSVFSSIVCCSRHQSRSLFRVSIKNVAFRNRVSNSSWFRSKEDSNLCFRLN 61

Query: 62  QRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETA 121
           QR+T+V A+NW++EKSPY+TLEL+RDA+EEQIKVAYRRLAKFYHPDVYDG+GTLE+GETA
Sbjct: 62  QRKTLVRASNWSEEKSPYDTLELDRDAEEEQIKVAYRRLAKFYHPDVYDGKGTLEEGETA 121

Query: 122 EAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAW 181
           EA+FIKIQAAYELL+D E++RQYDMDNRVNPMKASQAWMEWL+KKRKAFDQRGDMAIAAW
Sbjct: 122 EARFIKIQAAYELLMDSEKKRQYDMDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAIAAW 181

Query: 182 AEQQQLELNLRARRLSRSKV 201
           AEQQQLE+NLRARRLSRSKV
Sbjct: 182 AEQQQLEINLRARRLSRSKV 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459417|ref|XP_002285821.1| PREDICTED: uncharacterized protein LOC100250529 [Vitis vinifera] gi|302141895|emb|CBI19098.3| unnamed protein product [Vitis vinifera]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 154/208 (74%), Positives = 177/208 (85%), Gaps = 13/208 (6%)

Query: 3   SNMRTICRPHM---VFTSLISCRDQARSFIKVSFRSPNYRPRLS------SWFGFRELNR 53
           SN+RTICRPH+    F+S I CR QA +  ++SFR+PN + R+S       WF   + NR
Sbjct: 2   SNLRTICRPHIHIVFFSSFICCRSQA-AKSRISFRNPNSQSRVSLPCAFSPWF---DSNR 57

Query: 54  TESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG 113
            E WFRV+QRRT+V A+ W DEKSPYETLEL+RDADEE+IK+AYRRLAKFYHPDVYDGRG
Sbjct: 58  NEPWFRVSQRRTLVRASKWTDEKSPYETLELDRDADEEKIKLAYRRLAKFYHPDVYDGRG 117

Query: 114 TLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQR 173
           TL +GETAEA+FIKIQAAYELLID+++RRQYD DNRVNPMKASQAWMEWL+KKRKAFDQR
Sbjct: 118 TLAEGETAEARFIKIQAAYELLIDDKKRRQYDNDNRVNPMKASQAWMEWLMKKRKAFDQR 177

Query: 174 GDMAIAAWAEQQQLELNLRARRLSRSKV 201
           GDMAIAAWAEQQQ ELNLRARRLSRSK+
Sbjct: 178 GDMAIAAWAEQQQRELNLRARRLSRSKI 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515831|ref|XP_003526601.1| PREDICTED: uncharacterized protein LOC100808285 [Glycine max]

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 172/201 (85%), Gaps = 5/201 (2%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTES--WFRV 60
           SN+RT+CRP  VF S IS + Q RS  +VSFR+PN +PRL S F +  +    S  WFRV
Sbjct: 2   SNLRTLCRPQTVF-SFISFQHQFRS--RVSFRNPNCKPRLPSPFLYSTIASRGSNPWFRV 58

Query: 61  NQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGET 120
           NQRRTV  A NWA++KSPYETLELE DAD+EQIK AYRRLAKFYHPDVYDGRGTLE+GET
Sbjct: 59  NQRRTVAKATNWAEQKSPYETLELEGDADDEQIKNAYRRLAKFYHPDVYDGRGTLEEGET 118

Query: 121 AEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAA 180
           AEA+FIKIQ+AYELLID ERRRQYDMD+RVNPMKASQAWMEWLIKKRKAFDQRGDMAIAA
Sbjct: 119 AEARFIKIQSAYELLIDRERRRQYDMDSRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAA 178

Query: 181 WAEQQQLELNLRARRLSRSKV 201
           WAEQQQ ELNLR RRLSRSK+
Sbjct: 179 WAEQQQRELNLRVRRLSRSKI 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411751|ref|NP_565163.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana] gi|42572151|ref|NP_974166.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana] gi|6573763|gb|AAF17683.1|AC009243_10 F28K19.14 [Arabidopsis thaliana] gi|107738377|gb|ABF83686.1| At1g77930 [Arabidopsis thaliana] gi|332197925|gb|AEE36046.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana] gi|332197926|gb|AEE36047.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/200 (72%), Positives = 176/200 (88%), Gaps = 2/200 (1%)

Query: 3   SNMRTICRPHMVFTSLISC-RDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVN 61
           SN+R ICRP+ VF+S++ C R Q+RS  +VS ++  +R + S+   FR  N +  WFR+N
Sbjct: 2   SNLRAICRPYSVFSSIVCCSRHQSRSLFRVSIKNVAFRNQSSNSSWFRSKN-SNLWFRLN 60

Query: 62  QRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETA 121
           QR+T+V A+NW+ EKSPY+TLEL+R+A+EEQIKVAYRRLAKFYHPDVYDG+GTLE+GETA
Sbjct: 61  QRKTLVRASNWSQEKSPYDTLELDRNAEEEQIKVAYRRLAKFYHPDVYDGKGTLEEGETA 120

Query: 122 EAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAW 181
           EA+FIKIQAAYELL+D E++ QYDMDNRVNPMKASQAWMEWL+KKRKAFDQRGDMA+AAW
Sbjct: 121 EARFIKIQAAYELLMDSEKKVQYDMDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAVAAW 180

Query: 182 AEQQQLELNLRARRLSRSKV 201
           AEQQQL++NLRARRLSRSKV
Sbjct: 181 AEQQQLDINLRARRLSRSKV 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066897|ref|XP_002302268.1| predicted protein [Populus trichocarpa] gi|118487124|gb|ABK95391.1| unknown [Populus trichocarpa] gi|222843994|gb|EEE81541.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/208 (70%), Positives = 166/208 (79%), Gaps = 8/208 (3%)

Query: 5   MRTICRPHMVFTSLI---SCRDQARSFIKVSFRSP-NYRPRLSSWFG--FRELNRTESWF 58
           +RT CRPH V TS     S R Q RS I+VSFR+P +   R SS+F       N  + WF
Sbjct: 9   LRTACRPHTVLTSFTCSSSSRHQPRSRIRVSFRTPPDCNKRHSSFFSPWLIHTNNNDPWF 68

Query: 59  RVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKG 118
           RVN +RT+V A  W + KSPYETLELERDADEE IKVAYRRLAK+YHPDVYDGRGTLE+G
Sbjct: 69  RVNHKRTIVRA--WTEPKSPYETLELERDADEEDIKVAYRRLAKYYHPDVYDGRGTLEEG 126

Query: 119 ETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAI 178
           ETAEA+FIKIQAAYELL+D+E+RRQY+MDNRVNPMKASQAWMEWL+KKR AFDQRGDMAI
Sbjct: 127 ETAEARFIKIQAAYELLMDDEKRRQYNMDNRVNPMKASQAWMEWLMKKRTAFDQRGDMAI 186

Query: 179 AAWAEQQQLELNLRARRLSRSKVSNNFE 206
            AWAEQQQ E+NLR RRLSR+K   + E
Sbjct: 187 MAWAEQQQREMNLRVRRLSRTKTDPDEE 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511575|ref|XP_004163994.1| PREDICTED: uncharacterized LOC101214898 [Cucumis sativus]

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/203 (71%), Positives = 169/203 (83%), Gaps = 5/203 (2%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLS----SWFGFRELNRTESWF 58
           SN+RT CRPH    S      + RS   VSFR+PN + R S    ++        T++WF
Sbjct: 2   SNLRTACRPH-AMFSSFIFSSRFRSMPTVSFRNPNNKRRFSLFSPTFNSSPCFCPTQNWF 60

Query: 59  RVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKG 118
           R+NQRRT+  A+NWA+EKSPYETLELERDAD+EQIK ++RRLAKFYHPDVYDGRGTLE+G
Sbjct: 61  RINQRRTLAMASNWANEKSPYETLELERDADDEQIKSSHRRLAKFYHPDVYDGRGTLEEG 120

Query: 119 ETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAI 178
           ETAEA+FIKIQAAYELL+D+E+RRQYD+DNRVNPMKASQAWMEWLIKKRKAFDQRG+MAI
Sbjct: 121 ETAEARFIKIQAAYELLMDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGEMAI 180

Query: 179 AAWAEQQQLELNLRARRLSRSKV 201
           AAWAEQQQ E+NLRARRLS+SKV
Sbjct: 181 AAWAEQQQREMNLRARRLSQSKV 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545582|ref|XP_002513851.1| chaperone protein DNAj, putative [Ricinus communis] gi|223546937|gb|EEF48434.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/189 (77%), Positives = 164/189 (86%), Gaps = 5/189 (2%)

Query: 19  ISCRD-QARS-FIKVSFRS-PNYRPRLSSWFGFREL--NRTESWFRVNQRRTVVSAANWA 73
           +SCR  Q RS  ++VSFR+ P+ +P LSS   F        +SWFRVNQRRT V AANW 
Sbjct: 1   MSCRHHQPRSNGVRVSFRNHPDDKPPLSSPSLFSSWLHGNNDSWFRVNQRRTAVRAANWT 60

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
           D+KSPY+TLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLE+GETAEA+FIKIQAAYE
Sbjct: 61  DQKSPYDTLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYE 120

Query: 134 LLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRA 193
           LL+D+++ RQYDMD+RVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQ E+NLRA
Sbjct: 121 LLMDDDKHRQYDMDHRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQREMNLRA 180

Query: 194 RRLSRSKVS 202
           RRL+RSKV 
Sbjct: 181 RRLARSKVD 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491678|gb|AFK33905.1| unknown [Medicago truncatula]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 164/206 (79%), Gaps = 10/206 (4%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRL------SSWFGFR-ELNRTE 55
           SN+RT+CR   VF S I+CR Q R   + SF +PN +P L      S+W G     +R  
Sbjct: 2   SNLRTLCRTQTVF-SFINCRHQFR--FRASFWNPNCKPYLQSPWLYSTWLGSSGNSSRPM 58

Query: 56  SWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTL 115
             FR+NQ+RTV  A NW  +K+PYETLELE DAD+EQIK+AYRRLAKFYHPDVYDGRG L
Sbjct: 59  PQFRLNQKRTVAKATNWDQQKTPYETLELEGDADDEQIKIAYRRLAKFYHPDVYDGRGIL 118

Query: 116 EKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGD 175
           E+GETAEA+FIKIQAAYELLID ERR++YDM N+ NPMKASQAWMEWL+KKRKAF+QRGD
Sbjct: 119 EEGETAEARFIKIQAAYELLIDSERRKKYDMANQANPMKASQAWMEWLMKKRKAFNQRGD 178

Query: 176 MAIAAWAEQQQLELNLRARRLSRSKV 201
           MAI AWAEQQQ ELN+RAR+LSRSKV
Sbjct: 179 MAIYAWAEQQQRELNVRARQLSRSKV 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458087|ref|XP_004146779.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101214898 [Cucumis sativus]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/203 (69%), Positives = 165/203 (81%), Gaps = 8/203 (3%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLS----SWFGFRELNRTESWF 58
           SN+RT CRPH    S      + RS   VSFR+PN + R S    ++        T++WF
Sbjct: 2   SNLRTACRPH-AMFSSFIFSSRFRSMPTVSFRNPNNKRRFSLFSPTFNSSPCFCPTQNWF 60

Query: 59  RVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKG 118
           R+NQRRT+  A+NWA+EKSPYETLELERDAD+EQIK +YRRLAKFYHPDVYDGRGTLE+G
Sbjct: 61  RINQRRTLAMASNWANEKSPYETLELERDADDEQIKSSYRRLAKFYHPDVYDGRGTLEEG 120

Query: 119 ETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAI 178
           ETAEA+FIKIQ    LL+D+E+RRQYD+DNRVNPMKASQAWMEWLIKKRKAFDQRG+MAI
Sbjct: 121 ETAEARFIKIQX---LLMDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGEMAI 177

Query: 179 AAWAEQQQLELNLRARRLSRSKV 201
           AAWAEQQQ E+NLRARRLS+SKV
Sbjct: 178 AAWAEQQQREMNLRARRLSQSKV 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2029381	271	AT1G77930 "AT1G77930" [Arabido	0.963	0.771	0.691	1.5e-76
UNIPROTKB|O25668	288	C694_05300 "Co-chaperone-curve	0.304	0.229	0.52	4.2e-13
TIGR_CMR|CJE_1364	297	CJE_1364 "co-chaperone protein	0.285	0.208	0.536	6.8e-12
UNIPROTKB|G4N1N5	416	MGG_07502 "Chaperone dnaJ 2" [	0.281	0.146	0.507	2.3e-11
CGD|CAL0004107	488	MDJ1 [Candida albicans (taxid:	0.281	0.125	0.514	2.2e-10
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.276	0.161	0.507	1.4e-09
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.599	0.26	0.340	3.6e-09
TAIR|locus:2088585	517	AT3G17830 [Arabidopsis thalian	0.336	0.141	0.445	3.8e-09
DICTYBASE|DDB_G0291568	459	dnaja1 "DnaJ homolog subfamily	0.308	0.145	0.464	4.4e-09
SGD|S000001878	511	MDJ1 "Co-chaperone that stimul	0.290	0.123	0.485	5.3e-09

TAIR|locus:2029381 AT1G77930 "AT1G77930" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 146/211 (69%), Positives = 180/211 (85%)

Query:     3 SNMRTICRPHMVFTSLISC-RDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVN 61
             SN+R ICRP+ VF+S++ C R Q+RS  +VS ++  +R + S+   FR  N +  WFR+N
Sbjct:     2 SNLRAICRPYSVFSSIVCCSRHQSRSLFRVSIKNVAFRNQSSNSSWFRSKN-SNLWFRLN 60

Query:    62 QRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETA 121
             QR+T+V A+NW+ EKSPY+TLEL+R+A+EEQIKVAYRRLAKFYHPDVYDG+GTLE+GETA
Sbjct:    61 QRKTLVRASNWSQEKSPYDTLELDRNAEEEQIKVAYRRLAKFYHPDVYDGKGTLEEGETA 120

Query:   122 EAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAW 181
             EA+FIKIQAAYELL+D E++ QYDMDNRVNPMKASQAWMEWL+KKRKAFDQRGDMA+AAW
Sbjct:   121 EARFIKIQAAYELLMDSEKKVQYDMDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAVAAW 180

Query:   182 AEQQQLELNLRARRLSRSKVSNNFEFSAVEE 212
             AEQQQL++NLRARRLSRSKV    E   +E+
Sbjct:   181 AEQQQLDINLRARRLSRSKVDPEEERKILEK 211

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|O25668 C694_05300 "Co-chaperone-curved DNA binding protein A (CbpA)" [Helicobacter pylori 26695 (taxid:85962)]

 Score = 174 (66.3 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
             KS Y+TL +  +A +++IK +YRRLA+ YHPD       L K + AE KF +I AAYE+L
Sbjct:     3 KSLYQTLNVSENASQDEIKKSYRRLARQYHPD-------LNKTKEAEEKFKEINAAYEIL 55

Query:   136 IDEERRRQYDM--DN 148
              DEE+RRQYD   DN
Sbjct:    56 SDEEKRRQYDQFGDN 70

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CJE_1364 CJE_1364 "co-chaperone protein DnaJ" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 164 (62.8 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query:    77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
             S YETL + ++A  ++IK AYRRLA+ YHPD+       EKG  AE KF +I AAYE+L 
Sbjct:     3 SLYETLGVSKNASADEIKKAYRRLARKYHPDI-----NKEKG--AEEKFKEINAAYEILS 55

Query:   137 DEERRRQYD 145
             DE++R QYD
Sbjct:    56 DEKKRAQYD 64

GO:0006457 "protein folding" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

UNIPROTKB|G4N1N5 MGG_07502 "Chaperone dnaJ 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:    79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
             Y+ LE++R+ADE+ IK+AYRRL+K +HPD   G  T      AE KF+++  AYE LID+
Sbjct:    24 YKILEIDRNADEKAIKIAYRRLSKKWHPDKNPGDAT------AEGKFVEVSEAYEALIDK 77

Query:   139 ERRRQYD 145
               RR YD
Sbjct:    78 TTRRIYD 84

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004107 MDJ1 [Candida albicans (taxid:5476)]

 Score = 158 (60.7 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 35/68 (51%), Positives = 45/68 (66%)

Query:    78 PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
             PY+TL +++ AD+ QIK AY  L K YHPDV        K + AE +F KIQ +YELL D
Sbjct:    48 PYKTLGVDKSADDRQIKKAYYDLVKKYHPDV-------NKEKDAEKRFHKIQESYELLRD 100

Query:   138 EERRRQYD 145
             +E+R QYD
Sbjct:   101 KEKRAQYD 108

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0006458 "'de novo' protein folding" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 34/67 (50%), Positives = 44/67 (65%)

Query:    79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
             YE L L + A +++IK AYRRLAK YHPDV        K E A  KF ++Q AYE+L D+
Sbjct:     7 YEVLGLSKGASKDEIKKAYRRLAKKYHPDV-------SKEENAIEKFKEVQEAYEVLSDD 59

Query:   139 ERRRQYD 145
             ++R QYD
Sbjct:    60 QKRAQYD 66

GO:0009408 "response to heat" evidence=ISS

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 50/147 (34%), Positives = 74/147 (50%)

Query:     5 MRTICRPHMVFTSLI--SCRDQARS----FIKVSFRSPNYRPRLSSWFGFRELNRTESWF 58
             M  +  P ++ +SL   +  D  RS    F   S    N+R    S+      + + + +
Sbjct:     1 MAALASPSLIPSSLCFAAAADGPRSLSSNFSAFSDGGSNFRYH-KSFLSLSSSSSSSTPY 59

Query:    59 RVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKG 118
             R  + R++V  A   D    Y TL + + A+ ++IK AYRRLA+ YHPDV       E G
Sbjct:    60 RNRRGRSLVVFATSGDY---YATLGVSKSANNKEIKAAYRRLARQYHPDV-----NKEPG 111

Query:   119 ETAEAKFIKIQAAYELLIDEERRRQYD 145
              T   KF +I AAYE+L DE++R  YD
Sbjct:   112 ATE--KFKEISAAYEVLSDEQKRALYD 136

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2088585 AT3G17830 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 37/83 (44%), Positives = 50/83 (60%)

Query:    63 RRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAE 122
             RR V++ A   D    Y TL + R+A  ++IK +YR+LA+ YHPD       + K   AE
Sbjct:    52 RRRVITMAAGTDH---YSTLNVNRNATLQEIKSSYRKLARKYHPD-------MNKNPGAE 101

Query:   123 AKFIKIQAAYELLIDEERRRQYD 145
              KF +I AAYE+L DEE+R  YD
Sbjct:   102 DKFKQISAAYEVLSDEEKRSAYD 124

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

DICTYBASE|DDB_G0291568 dnaja1 "DnaJ homolog subfamily A member 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 152 (58.6 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 33/71 (46%), Positives = 44/71 (61%)

Query:    75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
             EK  YE L ++ D  E+++K AYR++A  YHPD   G G     + AEAKF  I  AYE+
Sbjct:     4 EKEYYERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGK----DAAEAKFKDISEAYEV 59

Query:   135 LIDEERRRQYD 145
             L D E+R+ YD
Sbjct:    60 LSDPEKRKMYD 70

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

SGD|S000001878 MDJ1 "Co-chaperone that stimulates HSP70 protein Ssc1p ATPase activity" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 152 (58.6 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 34/70 (48%), Positives = 44/70 (62%)

Query:    76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
             K PY+TL L++ A   +IK AY +LAK YHPD+        K   AE KF  +Q AYE+L
Sbjct:    60 KDPYDTLGLKKSATGAEIKKAYYKLAKKYHPDI-------NKEPDAEKKFHDLQNAYEIL 112

Query:   136 IDEERRRQYD 145
              DE +R+QYD
Sbjct:   113 SDETKRQQYD 122

GO:0051082 "unfolded protein binding" evidence=IEA;IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA;IMP

GO:0042026 "protein refolding" evidence=IMP;IDA

GO:0006458 "'de novo' protein folding" evidence=IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0000002 "mitochondrial genome maintenance" evidence=IMP

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0001671 "ATPase activator activity" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015296001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (272 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.467
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)			•						0.461
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.455
	GSVIVG00001482001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)			•						0.454
	GSVIVG00004141001	SubName- Full=Chromosome undetermined scaffold_611, whole genome shotgun sequence; (468 aa)			•						0.450
	GSVIVG00012517001	SubName- Full=Chromosome undetermined scaffold_388, whole genome shotgun sequence; Flags- Fragm [...] (372 aa)			•						0.447
	GSVIVG00027610001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (105 aa)			•						0.446
	GSVIVG00005738001	SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (626 aa)			•						0.445
	GSVIVG00022731001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)			•						0.441
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.440

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	8e-24
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	3e-22
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-21
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-18
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-18
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	8e-17
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-16
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-16
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-16
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-15
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-15
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-15
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	4e-15
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-13
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	5e-13
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-12
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-12
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-12
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	4e-12
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	4e-12
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-12
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	8e-12
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	1e-11
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-11
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	1e-11
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-11
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	4e-11
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	5e-11
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	8e-11
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-10
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	4e-10
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	5e-10
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-09
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-09
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	6e-09
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.001

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 96.9 bits (242), Expect = 8e-24
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + +DA EE+IK AYR+LAK YHPD   G       + AE KF +I  AYE+L D 
Sbjct: 7   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD------KEAEEKFKEINEAYEVLSDP 60

Query: 139 ERRRQYDM 146
           E+R  YD 
Sbjct: 61  EKRAAYDQ 68

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 92.7 bits (231), Expect = 3e-22
 Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 7/68 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + +DA EE+IK AYR+LAK YHPD         K + AE KF +I  AYE+L D 
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDR-------NKDKEAEEKFKEINEAYEVLSDP 55

Query: 139 ERRRQYDM 146
           E+R QYD 
Sbjct: 56  EKRAQYDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 83.3 bits (207), Expect = 2e-21
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
            YE L + RDA +E+IK AYR+LA  YHPD   G         AE KF +I  AYE+L D
Sbjct: 2   YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPG------DPAAEEKFKEINEAYEVLSD 55

Query: 138 EERRRQYD 145
            E+R  YD
Sbjct: 56  PEKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 82.5 bits (205), Expect = 1e-18
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R+A E++IK AYR+LA  YHPD    R   +K   AE KF +I+ AYE+L D 
Sbjct: 7   YEVLGVSRNASEDEIKKAYRKLAMKYHPD----RNPGDK--EAEEKFKEIKEAYEVLSDP 60

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 61  QKRAAYD 67

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 80.6 bits (199), Expect = 7e-18
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A +K  YE L ++R+A EE+IK AYRRLAK YHPD+  G       + AE KF +I  AY
Sbjct: 2   AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG------DKEAEQKFKEINEAY 55

Query: 133 ELLIDEERRRQYD 145
           E+L D ++R QYD
Sbjct: 56  EILSDPQKRAQYD 68

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 77.4 bits (191), Expect = 8e-17
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + +DA +++IK AYR+L+K YHPD       + K   AE K+ ++Q AYE L D 
Sbjct: 7   YDRLGVSKDASQDEIKKAYRKLSKKYHPD-------INKEPGAEEKYKEVQEAYETLSDP 59

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

Length = 380

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 70.3 bits (173), Expect = 2e-16
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
              YE L + RDA  ++IK AYR+LA  YHPD    +   +K E AE KF +I  AYE+L
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPD----KNPGDK-EEAEEKFKEINEAYEVL 55

Query: 136 IDEER 140
            D E+
Sbjct: 56  SDPEK 60

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 69.5 bits (171), Expect = 3e-16
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
            Y+ L +  DA +E+IK AYR+LA  YHPD             AE KF +I  AYE+L D
Sbjct: 2   YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD------PEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + R+A + +IK AYR+LA+  HPDV          E A+ KF +I  AYE+L D 
Sbjct: 6   YGLLGVSRNASDAEIKRAYRKLARELHPDVNP-------DEEAQEKFKEISVAYEVLSDP 58

Query: 139 ERRRQYDM 146
           E+RR  D+
Sbjct: 59  EKRRIVDL 66

Length = 378

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A +++IK AYR+L+K YHPD+        K E A+ KF +I  AYE+L D+
Sbjct: 7   YEVLGVSKSASKDEIKKAYRKLSKKYHPDI-------NKEEGADEKFKEISEAYEVLSDD 59

Query: 139 ERRRQYD 145
           ++R QYD
Sbjct: 60  QKRAQYD 66

Length = 376

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + RDAD++++K AYRRLA+ YHPDV        K   AE +F +I  AYE+L D 
Sbjct: 6   YEILGVSRDADKDELKRAYRRLARKYHPDV-------NKEPGAEDRFKEINRAYEVLSDP 58

Query: 139 ERRRQYD 145
           E R +YD
Sbjct: 59  ETRARYD 65

Length = 374

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 7/73 (9%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A+++  YE L ++R+AD+++IK AYR+LA+ YHPDV +  G       AE KF +I  AY
Sbjct: 2   AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG-------AEEKFKEISEAY 54

Query: 133 ELLIDEERRRQYD 145
            +L D+E+R++YD
Sbjct: 55  AVLSDDEKRQRYD 67

Length = 378

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 7/72 (9%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  YE L + R+A +E+IK AYRRLA+ YHPD         K   AE KF +I  AY++
Sbjct: 2   KKDYYEILGVSRNATQEEIKKAYRRLARKYHPD-------FNKNPEAEEKFKEINEAYQV 54

Query: 135 LIDEERRRQYDM 146
           L D E+R+ YD 
Sbjct: 55  LSDPEKRKLYDQ 66

Length = 382

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 10/72 (13%)

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
           D +  YE L L +D    +IK AYR+LA  +HPD         KG   E KF +I  AYE
Sbjct: 26  DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPD---------KGGDPE-KFKEISRAYE 75

Query: 134 LLIDEERRRQYD 145
           +L D E+R+ YD
Sbjct: 76  VLSDPEKRKIYD 87

Length = 421

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y+ L ++R+A +E IK A+R LAK +HPD++ G     K E AE KF +I  AYE+L
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPG----NKAE-AEEKFKEISEAYEVL 57

Query: 136 IDEERRRQYD 145
            D ++RRQYD
Sbjct: 58  SDPQKRRQYD 67

Length = 365

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y  + ++   D + IK AYRRLA+ YHPDV        K   AEA+F ++  A+E+L
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDV-------SKEPDAEARFKEVAEAWEVL 56

Query: 136 IDEERRRQYD 145
            DE+RR +YD
Sbjct: 57  SDEQRRAEYD 66

Length = 306

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 8/72 (11%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGET-AEAKFIKIQAAYE 133
           EK  Y+ L + +DA E +IK AYR+LA+ YHPD         KG+  AE +F +I  AY+
Sbjct: 8   EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDA-------NKGDAKAEERFKEISEAYD 60

Query: 134 LLIDEERRRQYD 145
           +L DE++R++YD
Sbjct: 61  VLSDEKKRKEYD 72

Length = 389

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L L +DA  E IK AYR+LA  YHPD             AE KF +I  AY +L D 
Sbjct: 8   YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-------AEEKFKEISEAYAVLSDA 60

Query: 139 ERRRQYD 145
           E+R QYD
Sbjct: 61  EKRAQYD 67

Length = 377

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  YE L + R+A +E+IK AY+RL K +HPD    R    + E AE KF +IQ AYE+
Sbjct: 3   KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPD----RHPENRKE-AEQKFKEIQEAYEV 57

Query: 135 LIDEERRRQYD 145
           L D ++R  YD
Sbjct: 58  LSDPQKRAMYD 68

Length = 369

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R AD+++IK AYR+LA  YHPD           + AE  F ++  AYE+L ++
Sbjct: 6   YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD------NKEAEEHFKEVNEAYEVLSND 59

Query: 139 ERRRQYD 145
           ++RR+YD
Sbjct: 60  DKRRRYD 66

Length = 397

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 63.8 bits (155), Expect = 4e-12
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 7/71 (9%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  YE L + + A E++I+ AYR+LAK YHPD       L K   A  K ++I  A ++
Sbjct: 3   KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPD-------LNKSPDAHDKMVEINEAADV 55

Query: 135 LIDEERRRQYD 145
           L+D+++R+QYD
Sbjct: 56  LLDKDKRKQYD 66

Length = 372

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             ++  YE L + RDA E++IK AYR+LA  YHPD             AE KF +   AY
Sbjct: 1   MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD------NPEAEQKFKEAAEAY 54

Query: 133 ELLIDEERRRQYD 145
           E+L D E+R +YD
Sbjct: 55  EVLRDAEKRARYD 67

Length = 373

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++R+A  +++K AYR+LA+ YHPDV        K   AE KF +++ AY+ L D 
Sbjct: 7   YEVLGVDRNASVDEVKKAYRKLARKYHPDV-------NKAPDAEDKFKEVKEAYDTLSDP 59

Query: 139 ERRRQYDMDNRVNP 152
           +++  YD     +P
Sbjct: 60  QKKAHYDQFGHTDP 73

Length = 371

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y  L + ++A +++IK A+++LA+ YHPDV        K   AE KF +I  AY +L
Sbjct: 4   KDYYAILGVPKNASQDEIKKAFKKLARKYHPDV-------NKSPGAEEKFKEINEAYTVL 56

Query: 136 IDEERRRQYD 145
            D E+RR YD
Sbjct: 57  SDPEKRRIYD 66

Length = 291

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 61.4 bits (148), Expect = 1e-11
 Identities = 34/80 (42%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           +D    YE L +  +A  E+IK AYR+LA  YHPD   G       + AE KF +I  AY
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD-----PKVAEEKFKEINEAY 57

Query: 133 ELLIDEERRRQYDMDNRVNP 152
           E+L D ERR +YD     N 
Sbjct: 58  EILSDPERRAEYDKIGADNY 77

Length = 237

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  YE L LE+ A +++IK A+R+LA  YHPD    +G  E    AE KF +I  AY++L
Sbjct: 4   KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPD--KNKGNKE----AEEKFKEINEAYQVL 57

Query: 136 IDEERRRQYD 145
            D +++ QYD
Sbjct: 58  SDPQKKAQYD 67

Length = 380

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R A  ++IK AYR+LA  YHPD         K + A  KF +I  AY +L D 
Sbjct: 5   YELLGVSRTASADEIKSAYRKLALKYHPD-------RNKEKGAAEKFAQINEAYAVLSDA 57

Query: 139 ERRRQYD 145
           E+R  YD
Sbjct: 58  EKRAHYD 64

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + RDA EE+IK +YR+LA  YHPD   G       + AE  F +   AYE+L D 
Sbjct: 7   YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG------DKEAEELFKEAAEAYEVLSDP 60

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 61  KKRGIYD 67

Length = 366

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (146), Expect = 8e-11
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + + A  E+IK AYR+LA  YHPD   G         AE +F ++  AYE+L D 
Sbjct: 4   YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA------EAEKRFKEVSEAYEVLSDA 57

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 58  QKRESYD 64

Length = 391

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++RDADE++IK A+R+LAK YHPD         K   A + F +I  A ++L + 
Sbjct: 5   YEVLGIDRDADEQEIKKAFRKLAKKYHPDR-------NKAPDAASIFAEINEANDVLSNP 57

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 58  KKRANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           W  EK  Y+ L +  DA  E+IK AYR+LA+  HPD   G         AE +F  +  A
Sbjct: 6   WV-EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG------DPAAEERFKAVSEA 58

Query: 132 YELLIDEERRRQYD 145
           +++L D  +R++YD
Sbjct: 59  HDVLSDPAKRKEYD 72

Length = 392

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           E+S Y+ L + + A++E+IK AYR+LA  YHPD   G       + +E KF +   AYE+
Sbjct: 3   ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG------NKESEEKFKEATEAYEI 56

Query: 135 LIDEERRRQYD 145
           L D ++R+ YD
Sbjct: 57  LRDPKKRQAYD 67

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + + A +  +K AY +LAK YHPD  D +        AE KF +I AAY++L DE
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-------DAEKKFKEINAAYDVLKDE 58

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 59  QKRAAYD 65

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           ++  YE L L + A +++IK AYR++A  YHPD   G       + AE+ F +   AYE+
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG------NKEAESIFKEATEAYEV 55

Query: 135 LIDEERRRQYD 145
           LID+ +R QYD
Sbjct: 56  LIDDNKRAQYD 66

Length = 365

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A+++  YE L + + A  ++IK AYR+ A  YHPD   G       + AE KF +   AY
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG------DKEAEEKFKEAAEAY 55

Query: 133 ELLIDEERRRQYD 145
           ++L D ++R +YD
Sbjct: 56  DVLSDPDKRSRYD 68

Length = 386

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 54.7 bits (131), Expect = 6e-09
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           E S YE LE+E+ +++E IK +YR+LA  YHPD   G       + AE KF  I  AY +
Sbjct: 2   ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG------DKEAEEKFKLINEAYGV 55

Query: 135 LIDEERRRQYDMDNR--VNPMKASQA 158
           L DE++R  YD   +  +N   ASQ+
Sbjct: 56  LSDEKKRALYDRYGKKGLNQAGASQS 81

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
           PYE L +++D  E  IK  YR L+  +HPD         + E  E K+  I  AY LL D
Sbjct: 100 PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEY-EEKYKTITKAYGLLTD 158

Query: 138 EERRRQY 144
           ++RR  Y
Sbjct: 159 KKRRENY 165

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTL--EKGETAEAKFIKIQAAYELLI 136
           Y+ L +    D+++IK AYR+L   +HPD    +G L  E  E A+ K  +IQAAYE LI
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKG-LPPEMMEMAKEKAQEIQAAYE-LI 260

Query: 137 DEERR 141
            +++ 
Sbjct: 261 KKQKG 265

Length = 267

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 88  ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145
           A   QI  A+++    YHPD     G     E     F  IQ A E+L D + R QYD
Sbjct: 58  AIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF----FKLIQKAREVLGDRKLRLQYD 111

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.95
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.89
PRK14296	372	chaperone protein DnaJ; Provisional	99.88
PRK14288	369	chaperone protein DnaJ; Provisional	99.88
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.86
PRK14286	372	chaperone protein DnaJ; Provisional	99.85
PRK14287	371	chaperone protein DnaJ; Provisional	99.84
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.84
PRK14298	377	chaperone protein DnaJ; Provisional	99.84
PRK14282	369	chaperone protein DnaJ; Provisional	99.83
PRK14285	365	chaperone protein DnaJ; Provisional	99.83
PRK14301	373	chaperone protein DnaJ; Provisional	99.83
PRK14276	380	chaperone protein DnaJ; Provisional	99.83
PRK14294	366	chaperone protein DnaJ; Provisional	99.83
PRK14278	378	chaperone protein DnaJ; Provisional	99.82
PRK14280	376	chaperone protein DnaJ; Provisional	99.82
PRK14297	380	chaperone protein DnaJ; Provisional	99.82
PRK10767	371	chaperone protein DnaJ; Provisional	99.81
PRK14284	391	chaperone protein DnaJ; Provisional	99.81
PRK14279	392	chaperone protein DnaJ; Provisional	99.81
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK14281	397	chaperone protein DnaJ; Provisional	99.8
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14290	365	chaperone protein DnaJ; Provisional	99.79
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14283	378	chaperone protein DnaJ; Provisional	99.78
PRK14277	386	chaperone protein DnaJ; Provisional	99.78
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.78
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.77
PRK14299	291	chaperone protein DnaJ; Provisional	99.77
PRK14291	382	chaperone protein DnaJ; Provisional	99.77
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.77
PRK14295	389	chaperone protein DnaJ; Provisional	99.77
PRK14292	371	chaperone protein DnaJ; Provisional	99.77
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PRK14293	374	chaperone protein DnaJ; Provisional	99.76
PRK14289	386	chaperone protein DnaJ; Provisional	99.74
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.73
PRK14300	372	chaperone protein DnaJ; Provisional	99.73
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.72
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.72
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.68
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.66
PHA03102	153	Small T antigen; Reviewed	99.65
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PRK01356	166	hscB co-chaperone HscB; Provisional	99.62
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.61
PRK05014	171	hscB co-chaperone HscB; Provisional	99.61
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.61
PRK03578	176	hscB co-chaperone HscB; Provisional	99.6
PRK00294	173	hscB co-chaperone HscB; Provisional	99.56
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.49
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.44
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.42
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.4
PHA02624	647	large T antigen; Provisional	99.38
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK01773	173	hscB co-chaperone HscB; Provisional	99.36
PTZ00100	116	DnaJ chaperone protein; Provisional	99.36
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.29
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.18
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.0
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.95
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.47
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.36
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.25
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.94
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.45
KOG0431	453	consensus Auxilin-like protein and related protein	97.02
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.98
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	95.3
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	87.15
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	86.32
PF13446	62	RPT: A repeated domain in UCH-protein	86.16
KOG0724	335	consensus Zuotin and related molecular chaperones	82.71

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.5e-29  Score=222.14  Aligned_cols=129  Identities=32%  Similarity=0.451  Sum_probs=105.2

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+.+      ++|+++|++|++||+||+||++|++||++|+.....
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~------~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~   76 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD------KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKA   76 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------HHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccccc
Confidence            58999999999999999999999999999999999863      679999999999999999999999999999877652


Q ss_pred             chhHHHHHHHHHhhhcc-ccchHHHHHHHHhH------HH---------HHHHHHHHHhcCCCCcccccccccccCC
Q 027925          155 ASQAWMEWLIKKRKAFD-QRGDMAIAAWAEQQ------QL---------ELNLRARRLSRSKVSNNFEFSAVEECSR  215 (217)
Q Consensus       155 ~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~~~------~~---------~~~~~~~~l~~~~~d~~~e~~~~~~c~~  215 (217)
                      .+.+.  .   ...+|+ +++|+|.++|++..      .+         .+.+.|+++.. +...+|++...+.|.+
T Consensus        77 gg~gg--~---g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~-G~~~~i~~~~~~~C~~  147 (371)
T COG0484          77 GGFGG--F---GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVF-GVKKEIRVTRSVTCST  147 (371)
T ss_pred             CCcCC--C---CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhcc-CceeeEecceeeECCc
Confidence            22110  0   112344 47888888884221      11         16778889888 9999999999999975

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.1e-23  Score=185.10  Aligned_cols=71  Identities=41%  Similarity=0.650  Sum_probs=67.6

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ...+|||+||||+++|+..|||+|||+||++||||+|+++      +.|++.|++|+.||+||+||++|+.||.+|.
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd------p~A~e~F~~in~AYEVLsDpekRk~YD~~GE   83 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD------PNANEKFKEINAAYEVLSDPEKRKHYDTYGE   83 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence            3468999999999999999999999999999999999996      8899999999999999999999999999985

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=2.8e-23  Score=188.41  Aligned_cols=132  Identities=27%  Similarity=0.454  Sum_probs=96.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.+|||+|||+||++||||++++       +.|+++|++|++||+||+||++|+.||++|......
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-------~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~   75 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-------PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDG   75 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcC
Confidence            4799999999999999999999999999999999864       358899999999999999999999999988642211


Q ss_pred             --c---h-hHHHHHHHHHh-hhccccchHHHHHHHHh------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 --A---S-QAWMEWLIKKR-KAFDQRGDMAIAAWAEQ------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 --~---~-~~~~~~~~~~~-~~f~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                        .   + .++.++|..+. .+|..++|+|..+|++.            ...++.+.++++.. +....+.+.....|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~-G~~~~i~~~~~~~C~  153 (372)
T PRK14296         76 SSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLF-GVDKIIELDLLTNCS  153 (372)
T ss_pred             CCCcCcCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhC-CeeEEEEEeeeeccC
Confidence              0   0 11111111110 02334556666666521            11236778888887 888899888887776

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=3.4e-23  Score=187.72  Aligned_cols=125  Identities=29%  Similarity=0.452  Sum_probs=91.8

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc-
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK-  154 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~-  154 (217)
                      .|||+||||+++||.+|||+|||+||++||||+++.+      ++|+++|++|++||+||+||.+|+.||++|...... 
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~------~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~   76 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD------KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA   76 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc------cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC
Confidence            7999999999999999999999999999999999753      458999999999999999999999999988643211 


Q ss_pred             ch--hHHHHHHHHHhhhccccchHHHHHHHH--------------hHHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 AS--QAWMEWLIKKRKAFDQRGDMAIAAWAE--------------QQQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      ..  .++.++       |+.++++|..+|+.              .....+.+.++++.. +....+.+.....|.
T Consensus        77 ~~~~~~~~~~-------f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~-G~~~~i~~~r~~~C~  144 (369)
T PRK14288         77 GASQSDFSDF-------FEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVF-GCKKTIKVQYQSVCE  144 (369)
T ss_pred             CCCccccccc-------hhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhC-CeEEEEEEEeeccCC
Confidence            10  111111       22222333332321              112236778888887 888888888777774

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.5e-22  Score=179.53  Aligned_cols=129  Identities=29%  Similarity=0.375  Sum_probs=91.8

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ...||+||||+++|+.+|||+|||+|+++||||+|++         +.++|++|..||+||+||++|+.||++|......
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---------~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~   73 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---------AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQG   73 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence            5789999999999999999999999999999999977         6899999999999999999999999998755533


Q ss_pred             chhH--HHHHHHHHhhhccccchHHHHHHHHhHHHHHHHHHHHHhcCCCCcccccccccccCCC
Q 027925          155 ASQA--WMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEECSRS  216 (217)
Q Consensus       155 ~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~~~  216 (217)
                      ++.+  ... |..+.. |++.+...... +...-.++.+.+++|-. +....+..+....|+.+
T Consensus        74 g~~~~g~~~-f~~~F~-~g~~~~~~~~r-g~~~~~~~~~~Le~~y~-G~s~kl~l~~~~iCs~C  133 (337)
T KOG0712|consen   74 GGGGGGFGG-FSQFFG-FGGNGGRGRQR-GKDVVHQLKVTLEELYM-GKSKKLFLSRNFICSKC  133 (337)
T ss_pred             cCCCCCCcc-HHHhcc-CCCcCcccccc-CCCceEEEEEEHHHhhc-CCccceecccCccCCcC
Confidence            2221  101 111110 11111111000 11111225567888887 78888888888888854

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.9e-22  Score=183.02  Aligned_cols=129  Identities=29%  Similarity=0.490  Sum_probs=94.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+      ++++++|++|++||+||+||.+|+.||++|......
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~   76 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN------KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNA   76 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcc
Confidence            47999999999999999999999999999999998753      568999999999999999999999999987643211


Q ss_pred             c----h-hHHHHHHHHHhhhccccchHHHHHHHHh------------------HHHHHHHHHHHHhcCCCCccccccccc
Q 027925          155 A----S-QAWMEWLIKKRKAFDQRGDMAIAAWAEQ------------------QQLELNLRARRLSRSKVSNNFEFSAVE  211 (217)
Q Consensus       155 ~----~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~d~~~e~~~~~  211 (217)
                      .    + ..+..+    ...|+.++|+|..+|+++                  ...++.+.++++.. +....+.+....
T Consensus        77 ~~~~~~~~~~~~~----~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~-G~~k~i~~~r~~  151 (372)
T PRK14286         77 GAGGFGQGAYTDF----SDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAAL-GREYKIEIPRLE  151 (372)
T ss_pred             ccCCCCCCCcccc----cccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhC-CeeEEEEeeccc
Confidence            0    0 000000    001233445555555321                  11225678888887 888999888888


Q ss_pred             ccC
Q 027925          212 ECS  214 (217)
Q Consensus       212 ~c~  214 (217)
                      .|+
T Consensus       152 ~C~  154 (372)
T PRK14286        152 SCV  154 (372)
T ss_pred             cCC
Confidence            775

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=1.5e-21  Score=177.06  Aligned_cols=124  Identities=27%  Similarity=0.465  Sum_probs=90.4

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.       +.++++|++|++||+||+||.+|+.||++|......
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~   75 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-------PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQ   75 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccc
Confidence            4799999999999999999999999999999999864       358899999999999999999999999998643221


Q ss_pred             c--hhHHHHHHHHHhhhccccchHHHHHHHHh--------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 A--SQAWMEWLIKKRKAFDQRGDMAIAAWAEQ--------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      .  +.+.        .+|.+++|+|..+|+++              ...++.+.++++.. +....+.+.....|+
T Consensus        76 ~~~~~~~--------~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~-G~~~~i~~~r~~~C~  142 (371)
T PRK14287         76 GFGGGGA--------GDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVF-GKETEIEIPREETCG  142 (371)
T ss_pred             ccCCCCC--------ccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcC-CeEEEEEEeeeccCC
Confidence            1  0000        01222334444444321              11124567777776 788888888887775

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.84  E-value=2.3e-21  Score=178.26  Aligned_cols=127  Identities=25%  Similarity=0.316  Sum_probs=88.4

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (217)
                      ...|||+||||+++|+.+|||+|||+||++||||++++          .++|++|++||+||+||.+|+.||.+|.....
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~   95 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE   95 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence            35899999999999999999999999999999999742          48999999999999999999999998764322


Q ss_pred             cc--hhHHHHHHHHHhhhccccchHHHHHHHHhHHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          154 KA--SQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       154 ~~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      ..  ..++.+.|..+   |++.+......-+......+.+.++++.. +....+.+.....|+
T Consensus        96 ~~~~~~d~~d~f~~~---Fggg~~~~~~~rg~di~~~l~vtLee~~~-G~~~~i~~~r~~~C~  154 (421)
T PTZ00037         96 GGEQPADASDLFDLI---FGGGRKPGGKKRGEDIVSHLKVTLEQIYN-GAMRKLAINKDVICA  154 (421)
T ss_pred             cCCCCcchhhhHHHh---hccccccccccCCCCEEEEeeeeHHHHhC-CCceEEEeecccccc
Confidence            11  11122222211   22100000000000112236678888887 888999998888885

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=1.5e-21  Score=177.38  Aligned_cols=129  Identities=32%  Similarity=0.444  Sum_probs=93.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.       ..++++|++|++||+||+||.+|+.||++|......
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~   76 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDN   76 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccc
Confidence            4799999999999999999999999999999999864       347899999999999999999999999988643221


Q ss_pred             chhHHHHHHHHHhhhccccchHHHHHHHHh-------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 ASQAWMEWLIKKRKAFDQRGDMAIAAWAEQ-------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      .... ...+.  ..+|++++|+|..+|++.             ...++.+.++++.. +....+.+.....|.
T Consensus        77 ~~~~-~~~~~--~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~-G~~~~i~~~r~~~C~  145 (377)
T PRK14298         77 QYSA-EDIFR--GADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAF-GVRKDIDVPRAERCS  145 (377)
T ss_pred             ccCc-ccccc--cCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhC-CeEEEEEEEeeccCC
Confidence            0000 00000  012344556666666521             01125567777777 888888888877775

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=2.4e-21  Score=175.67  Aligned_cols=130  Identities=31%  Similarity=0.461  Sum_probs=92.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..     ...++++|++|++||+||+||.+|+.||+++......
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~   77 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-----RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQP   77 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-----hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccc
Confidence            47999999999999999999999999999999998652     2458999999999999999999999999987643211


Q ss_pred             ------chhH-HHHHHHHHhhhccc-c-chHHHHHHHHh---------------HHHHHHHHHHHHhcCCCCcccccccc
Q 027925          155 ------ASQA-WMEWLIKKRKAFDQ-R-GDMAIAAWAEQ---------------QQLELNLRARRLSRSKVSNNFEFSAV  210 (217)
Q Consensus       155 ------~~~~-~~~~~~~~~~~f~~-~-~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~d~~~e~~~~  210 (217)
                            ...+ +.+.+.    .|.. + +|+|..+|++.               ...++.+.++++.. +....+.+...
T Consensus        78 ~~~~~~~~g~~~~~~~~----~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~-G~~~~i~~~r~  152 (369)
T PRK14282         78 PYQETESGGGFFEDIFK----DFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLIN-GAEIPVEYDRY  152 (369)
T ss_pred             ccccCCCCCcccccccc----cccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcC-CeEEEEEeeec
Confidence                  0011 111010    1111 1 24555555421               01125667888876 88888888887


Q ss_pred             cccC
Q 027925          211 EECS  214 (217)
Q Consensus       211 ~~c~  214 (217)
                      ..|.
T Consensus       153 ~~C~  156 (369)
T PRK14282        153 ETCP  156 (369)
T ss_pred             ccCC
Confidence            7775

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.2e-21  Score=177.43  Aligned_cols=132  Identities=27%  Similarity=0.418  Sum_probs=93.5

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCccc
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKA  155 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~~  155 (217)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.+      +.++++|++|++||+||+||.+|+.||+++.......
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~   76 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN------KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGG   76 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccC
Confidence            6999999999999999999999999999999998753      5688999999999999999999999999876432111


Q ss_pred             hh--HHHHHHHHHhhhccccchHHHHHHHHh--H------------HHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          156 SQ--AWMEWLIKKRKAFDQRGDMAIAAWAEQ--Q------------QLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       156 ~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~--~------------~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      ..  +...-+..+...|+.++|+|..+|++.  .            ...+.+.++++.. +....+.+.....|+
T Consensus        77 ~~~~~~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~-G~~~~i~~~r~~~C~  150 (365)
T PRK14285         77 GGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYL-GYKNNINITRNMLCE  150 (365)
T ss_pred             CCccccCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhC-CeEEEEEeeecccCC
Confidence            00  000000000001223455565665421  0            1125667888776 888888888887775

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=3.3e-21  Score=175.02  Aligned_cols=129  Identities=28%  Similarity=0.413  Sum_probs=94.5

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.++||+|||+|+++||||+++++      ++++++|++|++||+||+||.+|+.||.++......
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~   76 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN------PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNG   76 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC------hHHHHHHHHHHHHHHHhcchhhhhhhhhcccccccc
Confidence            37999999999999999999999999999999999763      568899999999999999999999999987643211


Q ss_pred             c--hhHHHHHHHHHhhhccccchHHHHHHHH---------------hHHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 A--SQAWMEWLIKKRKAFDQRGDMAIAAWAE---------------QQQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      .  ..+|.+    ....|+.++++|..+|+.               .....+.+.++++.. +....+.+.....|+
T Consensus        77 ~~~~~g~~~----~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~-G~~k~i~~~r~~~C~  148 (373)
T PRK14301         77 NGGFGGFSS----AEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAK-GDEVTLRIPKNVTCD  148 (373)
T ss_pred             CCCCCCccc----ccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhC-CceEEEEeeecccCC
Confidence            0  011100    001133344545444431               011226778888887 888888888888775

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.5e-21  Score=177.68  Aligned_cols=130  Identities=25%  Similarity=0.405  Sum_probs=93.5

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++       +.++++|++|++||+||+||.+|+.||++|......
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~   75 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-------PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANG   75 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccC
Confidence            4799999999999999999999999999999999875       347899999999999999999999999988643211


Q ss_pred             c--h--hHHHHHHHHHhhhccccchHHHHHHHHh--------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 A--S--QAWMEWLIKKRKAFDQRGDMAIAAWAEQ--------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~--~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      .  +  .....+.  ...+|+.++|+|..+|++.              ....+.+.++++.. +....+.+.....|+
T Consensus        76 ~~~~~~~~~~~~~--~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~-G~~~~i~~~~~~~C~  150 (380)
T PRK14276         76 GFGGGAGGFGGFD--GSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIF-GKEKEVSYNREATCH  150 (380)
T ss_pred             CCCCCCCCCCCcc--ccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcC-CeEEEEEeeccccCC
Confidence            0  0  0000000  0012334456666666421              11125667888777 888888888887775

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=5.8e-21  Score=173.01  Aligned_cols=129  Identities=29%  Similarity=0.435  Sum_probs=92.0

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+      +.++++|++|++||+||+||.+|+.||++|......
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~   76 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD------KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSG   76 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc------hHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccC
Confidence            47999999999999999999999999999999999753      458899999999999999999999999988643221


Q ss_pred             ch-hHHHHHHHHHhhhccccchHHHHHHH-H---------------hHHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 AS-QAWMEWLIKKRKAFDQRGDMAIAAWA-E---------------QQQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~~-~~~~~~~~~~~~~f~~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      .. .+...    +...|..++|+|..+|+ +               .....+.+.++++.. +-...+.+.....|+
T Consensus        77 ~~~~~~~~----~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~-G~~~~i~~~r~~~C~  148 (366)
T PRK14294         77 TGFSGFSG----FDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAF-GTEKEIRIQKLETCE  148 (366)
T ss_pred             CCCCCcCc----cccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcC-CeEEEEEeeecccCC
Confidence            10 00000    00012223444444443 1               011125677888877 788888887777775

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=7.4e-21  Score=172.98  Aligned_cols=124  Identities=30%  Similarity=0.448  Sum_probs=91.6

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCccc
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKA  155 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~~  155 (217)
                      .|||+||||+++|+.++||+|||+|+++||||++++       ++++++|++|++||+||+||.+|+.||++|.......
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~   75 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG   75 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-------HHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc
Confidence            699999999999999999999999999999999864       4588999999999999999999999999886321110


Q ss_pred             --hhHHHHHHHHHhhhccccchHHHHHHHHh---------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          156 --SQAWMEWLIKKRKAFDQRGDMAIAAWAEQ---------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       156 --~~~~~~~~~~~~~~f~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                        +.++.       .+|++++|+|..+|++.               ....+.+.++++.. +....+.+.....|+
T Consensus        76 ~~~~g~~-------~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~-G~~~~i~~~~~~~C~  143 (378)
T PRK14278         76 GGGGGFG-------GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECAT-GVTKQVTVDTAVLCD  143 (378)
T ss_pred             CCCCCCC-------cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcC-CeEEEEEEEeeccCC
Confidence              00000       01233445555555421               11125667888877 888888888887775

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=9.1e-21  Score=172.30  Aligned_cols=129  Identities=29%  Similarity=0.452  Sum_probs=92.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.++||+|||+|+++||||++++       +.++++|++|++||+||+||.+|+.||++|......
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~   75 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-------EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQ   75 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccccc
Confidence            3799999999999999999999999999999999865       348899999999999999999999999988643321


Q ss_pred             c--hhHHHHHHHHHhhhccccchHHHHHHHHh--------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 A--SQAWMEWLIKKRKAFDQRGDMAIAAWAEQ--------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      .  +.++..  ..+..+| +++|+|..+|+++              ....+.+.++++.. +....+.+.....|+
T Consensus        76 ~~~~~~~~~--~~~~~~~-~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~-G~~~~i~~~r~~~C~  147 (376)
T PRK14280         76 GFGGGGFGG--GDFGGGF-GFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVF-GKEKEIEIPKEETCD  147 (376)
T ss_pred             CcCCCCCCC--CCccccc-cchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhC-CceeEEEEeeeccCC
Confidence            1  000000  0000011 2345555555311              11235667888877 888888888888775

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.1e-20  Score=171.97  Aligned_cols=130  Identities=29%  Similarity=0.429  Sum_probs=92.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.+      +.++++|++|++||+||+||.+|+.||++|......
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~   76 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN------KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNG   76 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccc
Confidence            37999999999999999999999999999999998753      468999999999999999999999999988643211


Q ss_pred             c-h---hHHHHHHHHHhhhccccchHHHHHHHHh----------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 A-S---QAWMEWLIKKRKAFDQRGDMAIAAWAEQ----------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~-~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      . +   .++.. +.  ...+.+++|+|..+|++.                ...++.+.++++.. +....+.+.....|+
T Consensus        77 ~~~~~~~~~~~-~~--~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~-G~~~~i~~~r~~~C~  152 (380)
T PRK14297         77 AGGFGSGGFGG-FD--FSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVF-GVEKEISVTRNENCE  152 (380)
T ss_pred             cCCCCCCCCCC-cC--cccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcC-CeEEEEEeeeeccCC
Confidence            0 0   00000 00  000112334454444321                11125567788777 888888888887775

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=1.4e-20  Score=170.85  Aligned_cols=128  Identities=29%  Similarity=0.478  Sum_probs=91.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||+++|+.++||+|||+|+++||||++++.      +.++++|++|++||++|+||.+|+.||.++......
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~   76 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD------KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQ   76 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc------HHHHHHHHHHHHHHHHhcchhhhhHhhhcccccccc
Confidence            47999999999999999999999999999999998753      458899999999999999999999999987543221


Q ss_pred             ch--hHHHHHHHHHhhhcc-ccchHHHHHHHH-------------hHHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          155 AS--QAWMEWLIKKRKAFD-QRGDMAIAAWAE-------------QQQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       155 ~~--~~~~~~~~~~~~~f~-~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                      ..  .++..+     .+|. .++++|..+|++             ....++.+.++++.. +....+.+.....|+
T Consensus        77 ~~~~~~~~~~-----~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~-G~~~~v~~~r~~~C~  146 (371)
T PRK10767         77 GGGGGGFGGG-----GGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVR-GVTKEIRIPTLVTCD  146 (371)
T ss_pred             CCCCCCCCCc-----cccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhC-CeeEEEeeeecccCC
Confidence            10  000000     0111 123333333321             011225678888887 888888888888875

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=1.1e-20  Score=172.50  Aligned_cols=69  Identities=39%  Similarity=0.627  Sum_probs=64.3

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      .|||+||||+++|+.++||+|||+|+++||||++++.      +.++++|++|++||+||+||.+|+.||+++..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD------AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            4899999999999999999999999999999999763      56899999999999999999999999998764

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=2.9e-20  Score=169.82  Aligned_cols=69  Identities=41%  Similarity=0.658  Sum_probs=64.4

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      .+|||+||||+++|+.+|||+|||+|+++||||+++++      +.|+++|++|++||+||+||++|+.||++|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD------PAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------hHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            37999999999999999999999999999999998753      5689999999999999999999999999864

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.9e-20  Score=163.41  Aligned_cols=125  Identities=30%  Similarity=0.509  Sum_probs=91.1

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC--Cc
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN--PM  153 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~--~~  153 (217)
                      .|||+||||+++|+..|||+||++|+++||||.+.+.       .+.++|++|.+||+||+|+++|+.||..+...  +.
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~  115 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-------EASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEF  115 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccc
Confidence            4999999999999999999999999999999999873       69999999999999999999999999998754  11


Q ss_pred             cchhHHHHHHHHHhhhccccchHHHHHHHHhHHHHHHHHHHHHhcCCCCcccccccccccCC
Q 027925          154 KASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKVSNNFEFSAVEECSR  215 (217)
Q Consensus       154 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~~  215 (217)
                      .+  ...+.+..   .|++  .+....+...++-.+.+.+.+..+ +....++.+..+.|..
T Consensus       116 ~g--~~~~~~~~---~~~~--~~~~~~~~~~~~~d~~~~f~~A~~-g~~~~~~~~~~~~~~t  169 (288)
T KOG0715|consen  116 GG--NPFDVFLE---FFGG--KMNKRVPDKDQYYDLSLDFKEAVR-GSKKRISFNVLSDCET  169 (288)
T ss_pred             cC--CccchHHH---hhcc--cccccccCcccccccccCHHHHhh-ccccceEEEeeccccc
Confidence            11  00111111   1222  011111111233336677777777 6688899888888864

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.7e-20  Score=171.53  Aligned_cols=132  Identities=25%  Similarity=0.442  Sum_probs=93.1

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc--
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM--  153 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~--  153 (217)
                      .|||+||||+++|+.++||+|||+|+++||||++++.      ..++++|++|++||+||+||.+|+.||+++.....  
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~   76 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN------KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSS   76 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc------hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccc
Confidence            6999999999999999999999999999999999763      45889999999999999999999999998753211  


Q ss_pred             ----c------chhHHHHHHHHHhhhccccchH-------HHHHHHH--------------hHHHHHHHHHHHHhcCCCC
Q 027925          154 ----K------ASQAWMEWLIKKRKAFDQRGDM-------AIAAWAE--------------QQQLELNLRARRLSRSKVS  202 (217)
Q Consensus       154 ----~------~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~--------------~~~~~~~~~~~~l~~~~~d  202 (217)
                          .      ...+|.++|..+...|++.+.+       +...+++              .....+.+.++++.. +..
T Consensus        77 ~~~~~~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~-G~~  155 (397)
T PRK14281         77 AASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAK-GVE  155 (397)
T ss_pred             cccCCCCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhC-CeE
Confidence                0      0112445554333344321100       0000000              111225678888887 888


Q ss_pred             cccccccccccC
Q 027925          203 NNFEFSAVEECS  214 (217)
Q Consensus       203 ~~~e~~~~~~c~  214 (217)
                      ..+.+.....|.
T Consensus       156 ~~i~~~r~~~C~  167 (397)
T PRK14281        156 KTLKIKKQVPCK  167 (397)
T ss_pred             EEEEEEeeecCC
Confidence            888888887775

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.3e-19  Score=150.74  Aligned_cols=103  Identities=33%  Similarity=0.527  Sum_probs=81.4

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (217)
                      ...|+|+||||.++|+..+|++||++|++++|||+++.    +...++.++|+.|+.||.||+|.++|+.||+.|..+..
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~e----ed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~   87 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHE----EDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDE   87 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchh----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCc
Confidence            35699999999999999999999999999999999963    23578999999999999999999999999999987743


Q ss_pred             cchhHHHHHHHHHhhhccccchHHHHHH
Q 027925          154 KASQAWMEWLIKKRKAFDQRGDMAIAAW  181 (217)
Q Consensus       154 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~  181 (217)
                      .+ ....+|..-|+..|.......+..|
T Consensus        88 ~~-d~~~~~~e~~~~iyk~VteedIeef  114 (264)
T KOG0719|consen   88 SG-DIDEDWLEFWRAIYKKVTEEDIEEF  114 (264)
T ss_pred             cc-hhhhHHHHHHHHHHhhcccccHHHH
Confidence            32 2234444444455655544444444

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=7.2e-20  Score=165.82  Aligned_cols=70  Identities=47%  Similarity=0.749  Sum_probs=64.8

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      .|||+||||+++|+.+|||+|||+|+++||||+++..     .+.|+++|++|++||+||+||.+|+.||.+|..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-----KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            6999999999999999999999999999999998753     246899999999999999999999999998864

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=3.5e-19  Score=161.63  Aligned_cols=72  Identities=46%  Similarity=0.668  Sum_probs=66.7

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ...+.||+||||.++|+..+||++||+||++||||+++..     .++++++|+.|+.||+|||||..|++||.+..
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~-----ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR-----IEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc-----HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            3457899999999999999999999999999999998875     57899999999999999999999999998743

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.3e-19  Score=163.24  Aligned_cols=69  Identities=46%  Similarity=0.785  Sum_probs=64.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++       +.++++|++|++||+||+||.+|+.||++|..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~   72 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-------EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA   72 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence            5799999999999999999999999999999999864       34899999999999999999999999998754

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.7e-19  Score=163.15  Aligned_cols=70  Identities=51%  Similarity=0.787  Sum_probs=64.8

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++.      +.++++|++|++||+||+||.+|+.||.+|..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD------KEAEQKFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc------hHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            47999999999999999999999999999999999753      45889999999999999999999999998753

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.78  E-value=4.9e-20  Score=166.17  Aligned_cols=127  Identities=34%  Similarity=0.462  Sum_probs=89.7

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCccc-
Q 027925           77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKA-  155 (217)
Q Consensus        77 d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~~-  155 (217)
                      |||+||||+++|+.++||+|||+|+++||||+++.       +.++++|++|++||+||+||.+|+.||.++....... 
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~   73 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGG   73 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccC
Confidence            79999999999999999999999999999999863       3478999999999999999999999999876432211 


Q ss_pred             ---hhHHHHHHHHHhhhccccchHHHHHHHHh----------------HHHHHHHHHHHHhcCCCCcccccccccccC
Q 027925          156 ---SQAWMEWLIKKRKAFDQRGDMAIAAWAEQ----------------QQLELNLRARRLSRSKVSNNFEFSAVEECS  214 (217)
Q Consensus       156 ---~~~~~~~~~~~~~~f~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~d~~~e~~~~~~c~  214 (217)
                         ...+.. +.  ...|+.+.+++..+|++.                ...++.+.++++.. +-...+.+.....|+
T Consensus        74 ~~~~~~~~~-~~--~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~-G~~~~i~~~r~~~C~  147 (354)
T TIGR02349        74 GGGGGGFNG-FD--IGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVF-GVEKEIEIPRKESCE  147 (354)
T ss_pred             cCCCCCcCC-cc--ccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhC-CeeEEEEeecCCcCC
Confidence               000000 00  001333445555555421                11124567777776 777778777777775

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.77  E-value=3.9e-19  Score=122.21  Aligned_cols=64  Identities=58%  Similarity=0.926  Sum_probs=60.0

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925           77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD  145 (217)
Q Consensus        77 d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD  145 (217)
                      |||+||||+++++.++||++|+++++++|||+++..     ...+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGD-----EAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTST-----HHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhh-----hhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            589999999999999999999999999999998774     1468899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.1e-19  Score=156.42  Aligned_cols=69  Identities=41%  Similarity=0.660  Sum_probs=64.0

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++       +.++++|++|++||+||+||.+|+.||+++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            3799999999999999999999999999999999864       35889999999999999999999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.6e-19  Score=161.44  Aligned_cols=69  Identities=46%  Similarity=0.727  Sum_probs=64.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ..|||+||||+++|+.++||+|||+|+++||||++++       +.++++|++|++||+||+||.+|+.||+++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-------PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            3799999999999999999999999999999999875       34789999999999999999999999998764

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=7.3e-19  Score=154.26  Aligned_cols=75  Identities=37%  Similarity=0.581  Sum_probs=69.4

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (217)
                      ..|||+||||.++++..+|++|||.++++||||+|+++      +.|.++|+.|.+||+||+|+.+|+.||..+......
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d------P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~   77 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD------PQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA   77 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence            57999999999999999999999999999999999996      669999999999999999999999999998755544


Q ss_pred             c
Q 027925          155 A  155 (217)
Q Consensus       155 ~  155 (217)
                      .
T Consensus        78 ~   78 (296)
T KOG0691|consen   78 Q   78 (296)
T ss_pred             h
Confidence            3

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.7e-19  Score=161.18  Aligned_cols=133  Identities=27%  Similarity=0.404  Sum_probs=91.0

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhc----cCCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM----DNRV  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~----~~~~  150 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..      +.++++|++|++||+||+||.+|+.||+    +|..
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~   81 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD------AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG   81 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc------hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence            37999999999999999999999999999999998753      4589999999999999999999999998    6643


Q ss_pred             CCcc----c-hhHH----HHHHHHHh--h---hc-cccchHHHHHHHHh-----------HHHHHHHHHHHHhcCCCCcc
Q 027925          151 NPMK----A-SQAW----MEWLIKKR--K---AF-DQRGDMAIAAWAEQ-----------QQLELNLRARRLSRSKVSNN  204 (217)
Q Consensus       151 ~~~~----~-~~~~----~~~~~~~~--~---~f-~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~d~~  204 (217)
                      ....    . +.++    .+.|....  .   +| +.+.++|..+|+++           ...++.+.++++.. +...+
T Consensus        82 g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~-G~~k~  160 (389)
T PRK14295         82 GFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAID-GATVP  160 (389)
T ss_pred             ccccCCCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhC-CceEE
Confidence            2210    0 0000    01110000  0   00 01223343334321           11125678888887 88888


Q ss_pred             cccccccccC
Q 027925          205 FEFSAVEECS  214 (217)
Q Consensus       205 ~e~~~~~~c~  214 (217)
                      +.+.....|.
T Consensus       161 i~~~r~~~C~  170 (389)
T PRK14295        161 LRLTSQAPCP  170 (389)
T ss_pred             EEeeccccCC
Confidence            8888877775

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=3.9e-19  Score=161.33  Aligned_cols=68  Identities=41%  Similarity=0.617  Sum_probs=63.6

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      .|||+||||+++|+.++||+|||+|+++||||+++.       ..++++|++|++||+||+||.+|+.||.+|..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            589999999999999999999999999999999864       35889999999999999999999999998864

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=5e-19  Score=151.57  Aligned_cols=69  Identities=38%  Similarity=0.590  Sum_probs=65.5

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ..++|+||||+++|+.++||++||+|+++||||++++.      +++.++|++||+||+||+||.+|..||.+|.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~------P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN------PEATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC------chhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            57899999999999999999999999999999999884      6799999999999999999999999999965

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=4.3e-19  Score=161.26  Aligned_cols=68  Identities=47%  Similarity=0.727  Sum_probs=63.3

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      .|||+||||+++|+.++||+|||+|+++||||+++.       +.++++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-------PGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            699999999999999999999999999999999865       34789999999999999999999999998764

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.8e-18  Score=155.64  Aligned_cols=70  Identities=37%  Similarity=0.614  Sum_probs=65.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++      ++++++|++|++||+||+||.+|+.||.++..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD------KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------hHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            47999999999999999999999999999999999763      56899999999999999999999999998753

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3e-18  Score=155.73  Aligned_cols=77  Identities=42%  Similarity=0.652  Sum_probs=70.1

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (217)
                      ++.+||.+|+|+++|+.+|||+|||++++.|||||+.+.   .+++.|++.|+.|..|||||+||.+|++||.+|..+..
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dp---d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDP---DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCCh---hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            456999999999999999999999999999999999753   35788999999999999999999999999999876654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=4.1e-18  Score=154.73  Aligned_cols=68  Identities=41%  Similarity=0.654  Sum_probs=63.1

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.       ..++++|++|++||+||+||.+|+.||.+|..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-------KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            699999999999999999999999999999999864       34788999999999999999999999998753

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.72  E-value=7.6e-18  Score=149.34  Aligned_cols=66  Identities=44%  Similarity=0.670  Sum_probs=62.1

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (217)
                      .|||+||||+++++.++||+|||+|+++||||+++.       ..++++|++|++||++|+||.+|+.||.++
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-------PDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            699999999999999999999999999999999754       358999999999999999999999999875

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.72  E-value=1.8e-17  Score=161.74  Aligned_cols=73  Identities=27%  Similarity=0.379  Sum_probs=66.5

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      ....+||+||||+++|+..+||+|||+||++||||+++++       .+.++|+.|++||+||+||.+|+.||.+|..+.
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-------~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-------EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            4568999999999999999999999999999999999752       478899999999999999999999999987543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.68  E-value=8.2e-17  Score=108.91  Aligned_cols=59  Identities=51%  Similarity=0.720  Sum_probs=54.2

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChh
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEE  139 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~  139 (217)
                      .+||+||||+++++.++||++|+++++++|||++++.     .+.+.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-----~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-----KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999999999999998752     3568999999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.66  E-value=2.7e-16  Score=104.45  Aligned_cols=55  Identities=47%  Similarity=0.695  Sum_probs=51.2

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCC
Q 027925           77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID  137 (217)
Q Consensus        77 d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsd  137 (217)
                      |||+||||+++++.++||++|++|++++|||+++..      +.+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~------~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD------PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999998752      5689999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.65  E-value=2.1e-16  Score=126.72  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=63.2

Q ss_pred             CCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           75 EKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        75 ~~d~Y~iLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      ...+|+||||+++|  +..+||+|||++++++|||++++          .++|++|++||++|+|+.+|..||.++....
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----------~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----------EEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----------hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            35789999999999  99999999999999999999643          4799999999999999999999999987554


Q ss_pred             ccc
Q 027925          153 MKA  155 (217)
Q Consensus       153 ~~~  155 (217)
                      ...
T Consensus        74 ~~~   76 (153)
T PHA03102         74 SEE   76 (153)
T ss_pred             ccc
Confidence            443

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.9e-16  Score=130.87  Aligned_cols=75  Identities=36%  Similarity=0.532  Sum_probs=68.0

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (217)
                      ...|+|+||||+++++.+|||+|||+|+++|||||++..      ...++.|..|++||+.|+|+..|..|..+|..+..
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~------~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp  170 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE------EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP  170 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc------chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence            457999999999999999999999999999999999773      45788999999999999999999999999986654


Q ss_pred             c
Q 027925          154 K  154 (217)
Q Consensus       154 ~  154 (217)
                      .
T Consensus       171 q  171 (230)
T KOG0721|consen  171 Q  171 (230)
T ss_pred             c
Confidence            4

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.62  E-value=1.2e-15  Score=124.38  Aligned_cols=71  Identities=21%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           76 KSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        76 ~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      .|||+||||++.  ++..+|+++|++|++++|||++...   .+...+.+.+..||+||+||+||.+|+.|+....
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~---~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTL---QEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            589999999996  7899999999999999999998642   1233455678999999999999999999987653

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=9.3e-16  Score=126.14  Aligned_cols=68  Identities=49%  Similarity=0.664  Sum_probs=63.6

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccc-HHHHHHHHHHHHHHHcCChhHHHhhhcc
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGE-TAEAKFIKIQAAYELLIDEERRRQYDMD  147 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~-~a~~~f~~I~~AY~vLsdp~~R~~YD~~  147 (217)
                      ...+||+||||+++|+..+|+++||+++++||||+++..      . .+.+.|+.|++||++|+|+.+|..||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD------PKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            457999999999999999999999999999999999875      2 4899999999999999999999999985

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.61  E-value=4e-15  Score=121.75  Aligned_cols=73  Identities=19%  Similarity=0.313  Sum_probs=62.4

Q ss_pred             CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           76 KSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        76 ~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      .|||+||||++.  ++..+|+++|++|++++|||++.+.+ +.+...+.+.+..||+||+||+||.+|+.|+....
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~-~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~   75 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANAS-ERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH   75 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCc-HHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence            489999999995  78899999999999999999987642 22344578899999999999999999999986543

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.61  E-value=1.7e-15  Score=145.29  Aligned_cols=69  Identities=39%  Similarity=0.638  Sum_probs=63.7

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      .|||+||||+++|+.++||++||+|+++||||+++.       ..+.++|++|++||++|+||.+|+.||.++...
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-------~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-------PDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            699999999999999999999999999999999865       347889999999999999999999999987644

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.60  E-value=1.1e-14  Score=119.62  Aligned_cols=73  Identities=23%  Similarity=0.357  Sum_probs=62.0

Q ss_pred             CCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccC
Q 027925           75 EKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (217)
Q Consensus        75 ~~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (217)
                      ..|||+||||++.  ++..+|+++|++|++++|||++...+ ..++..+.+.+..||+||++|+||.+|+.|+...
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~-~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l   79 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAG-DAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL   79 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence            4799999999995  68999999999999999999987642 2233446677899999999999999999999643

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.56  E-value=8.8e-15  Score=119.89  Aligned_cols=75  Identities=23%  Similarity=0.360  Sum_probs=64.3

Q ss_pred             CCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           74 DEKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ...|||++|||++.  .+..+|+++||+|++++|||++.+.. ..++..+.+.+..||+||+||+||.+|+.|+....
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~-~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAP-EREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCc-HHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            35899999999996  67899999999999999999987642 22345578899999999999999999999996543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.55  E-value=4.1e-15  Score=132.14  Aligned_cols=76  Identities=39%  Similarity=0.652  Sum_probs=68.6

Q ss_pred             CCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           72 WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        72 ~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ....+|||+||||.++|+..||.+|||+|+.+||||...+.   +++..|+.+|..|..|-+||+||++|+.||.+-++
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdE---eEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP  465 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDE---EEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP  465 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCH---HHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence            35679999999999999999999999999999999998763   34667999999999999999999999999998653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=1.5e-14  Score=130.71  Aligned_cols=92  Identities=32%  Similarity=0.467  Sum_probs=77.0

Q ss_pred             CCCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           71 NWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        71 ~~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ..+.-+|||.||||..+++..+||++||++++.||||++.+.     +.+++.+|++|.+||.+|+||.+|..||..-+.
T Consensus       368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-----q~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl  442 (486)
T KOG0550|consen  368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-----QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL  442 (486)
T ss_pred             HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-----hHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence            345678999999999999999999999999999999999874     578999999999999999999999999998766


Q ss_pred             CCccchhHHHHHHHHHh
Q 027925          151 NPMKASQAWMEWLIKKR  167 (217)
Q Consensus       151 ~~~~~~~~~~~~~~~~~  167 (217)
                      .+++.+.+..+.+..++
T Consensus       443 e~~~~~~a~~dp~~~~~  459 (486)
T KOG0550|consen  443 EEVGSGGAGFDPFNIFR  459 (486)
T ss_pred             hhhcCCCcCcChhhhhh
Confidence            66554434344444433

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=7.7e-14  Score=127.06  Aligned_cols=69  Identities=32%  Similarity=0.540  Sum_probs=65.0

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      +..|+|.+|||+.+++.++||+.||++|...|||||..       +.|++.|+.|+.||++|+|+++|..||....
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-------~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~  301 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-------PRAEEAFKKLQVAFEVIGDSVKRKEYDLELK  301 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-------hhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence            37899999999999999999999999999999999975       5699999999999999999999999999764

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.42  E-value=1.7e-13  Score=119.51  Aligned_cols=65  Identities=37%  Similarity=0.507  Sum_probs=57.2

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCc-ccccHHHHHHHHHHHHHHHcCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTL-EKGETAEAKFIKIQAAYELLID  137 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~-~~~~~a~~~f~~I~~AY~vLsd  137 (217)
                      ....++|+||||++++|.++||++||+|+++||||++.+.|.+ +..+.++++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            3457999999999999999999999999999999998776543 3356799999999999999974

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.6e-13  Score=117.03  Aligned_cols=71  Identities=37%  Similarity=0.615  Sum_probs=65.1

Q ss_pred             CCCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           72 WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        72 ~~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      .....|.|+||||.++++..+|.+|||+|+++||||++.+.       ++.+.|+.|..||++|.|.+.|..||-..+
T Consensus        29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-------e~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-------ESKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-------hhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            35668999999999999999999999999999999999874       456999999999999999999999998764

>PHA02624 large T antigen; Provisional

Probab=99.38  E-value=8.7e-13  Score=125.17  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=67.0

Q ss_pred             CCCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhh--hccC-
Q 027925           74 DEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY--DMDN-  148 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y--D~~~-  148 (217)
                      +..++|+||||+++|  +.++||+|||+++++||||+.+          ++++|++|++||++|+|+.+|..|  |... 
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----------deekfk~Ln~AYevL~d~~k~~r~~fd~~~~   78 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----------DEEKMKRLNSLYKKLQEGVKSARQSFGTQDS   78 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----------cHHHHHHHHHHHHHHhcHHHhhhcccccccc
Confidence            357899999999999  9999999999999999999953          257999999999999999999999  5431 


Q ss_pred             CCCCccchhHHHHHHHHH
Q 027925          149 RVNPMKASQAWMEWLIKK  166 (217)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~  166 (217)
                      ..-+..+...|.+|+..+
T Consensus        79 ~~v~~~~~~~w~~ww~~f   96 (647)
T PHA02624         79 SEIPTYGTPEWEQWWEEF   96 (647)
T ss_pred             cCCCCCccccHHHHHHHh
Confidence            111233555677777644

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4.1e-13  Score=115.43  Aligned_cols=70  Identities=47%  Similarity=0.673  Sum_probs=63.0

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ..|||+||||.++|+..+|++||++++++||||+++..     ...++.+|++|.+||++|+|+.+|..||+++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-----~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-----KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-----hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            36899999999999999999999999999999997652     23466699999999999999999999999986

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=1.5e-12  Score=106.80  Aligned_cols=73  Identities=22%  Similarity=0.319  Sum_probs=63.8

Q ss_pred             CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           76 KSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        76 ~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      .|||++|||++.  .+...|+++|+.|.+++|||+....+ +.++..+.+....||+||.||+||.+|+.|=....
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~-~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSS-AQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCC-HHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999995  89999999999999999999998763 34456678899999999999999999999976543

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.36  E-value=1e-12  Score=100.68  Aligned_cols=53  Identities=26%  Similarity=0.368  Sum_probs=47.5

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcC
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI  136 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLs  136 (217)
                      ...++|+||||+++++.++||++||+|++++|||+.+          ..+.|++|++||++|.
T Consensus        63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----------s~~~~~kIneAyevL~  115 (116)
T PTZ00100         63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----------STYIASKVNEAKDLLL  115 (116)
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHHh
Confidence            3479999999999999999999999999999999853          2478899999999995

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.29  E-value=3e-12  Score=116.64  Aligned_cols=79  Identities=33%  Similarity=0.448  Sum_probs=71.4

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (217)
                      ..-|+|+||||..+++..+||++||+|+.++||||.+. -.++++.+-++.++.|++||+.|+|...|+.|-.+|.++..
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~-mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p  174 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP-MVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP  174 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC-CChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence            35799999999999999999999999999999999887 35556788999999999999999999999999999876543

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.18  E-value=5e-11  Score=96.36  Aligned_cols=62  Identities=23%  Similarity=0.409  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           87 DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        87 ~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ..+..+|+++|++|++++|||++...+ ..++..+.+.+..||+||+||+||.+|+.|+....
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~-~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGS-AQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCC-hhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            357899999999999999999986643 22345578899999999999999999999998754

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.4e-10  Score=93.04  Aligned_cols=64  Identities=31%  Similarity=0.607  Sum_probs=58.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHh
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQ  143 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~  143 (217)
                      .-|+|+||.|.|..+.++||+.||+|++..|||+|+++     .+.|...|-.|.+||.+|-|+..|..
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd-----~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD-----AERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc-----HHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            46999999999999999999999999999999999986     47799999999999999999985543

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.2e-09  Score=94.23  Aligned_cols=71  Identities=32%  Similarity=0.387  Sum_probs=62.3

Q ss_pred             CCCCcchhccCCC---CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccC
Q 027925           74 DEKSPYETLELER---DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (217)
Q Consensus        74 ~~~d~Y~iLgv~~---~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (217)
                      ...|+|.+|||+.   .++..+|.++.++.+.+||||+....|    .....+.|+.|+.||+||+|+.+|..||.-.
T Consensus        41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g----~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG----NKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC----CCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            3489999999986   788999999999999999999985543    2446899999999999999999999999864

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=2.1e-07  Score=92.49  Aligned_cols=63  Identities=25%  Similarity=0.371  Sum_probs=51.8

Q ss_pred             HhhhcCCCCCCCcchhccCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCC
Q 027925           66 VVSAANWADEKSPYETLELER----DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID  137 (217)
Q Consensus        66 ~~~~~~~~~~~d~Y~iLgv~~----~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsd  137 (217)
                      ....+......+.|+||.|+-    ....++||++|++|+.+||||||+.         ..++|..+++||+.|+.
T Consensus      1271 lekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---------GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1271 LEKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---------GREMFERVNKAYELLSS 1337 (2235)
T ss_pred             HhcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---------HHHHHHHHHHHHHHHHH
Confidence            334444456678999999985    3455899999999999999999965         67999999999999983

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=3.3e-07  Score=77.85  Aligned_cols=58  Identities=31%  Similarity=0.528  Sum_probs=50.7

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHH-HcCCh
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE-LLIDE  138 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~-vLsdp  138 (217)
                      .-..+|.||||..+++.++++.+|..|++++|||...+       +...+.|.+|.+||. ||+..
T Consensus        45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-------~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-------EADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-------cccHHHHHHHHHHHHHHHHHH
Confidence            44689999999999999999999999999999998755       346789999999998 77643

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.8e-06  Score=64.87  Aligned_cols=54  Identities=28%  Similarity=0.263  Sum_probs=47.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCCh
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE  138 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp  138 (217)
                      ....-.||||.++++.+.||.++|++....|||+.+.+          -.-.+||||+++|...
T Consensus        55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP----------YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP----------YLASKINEAKDLLEGT  108 (112)
T ss_pred             hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH----------HHHHHHHHHHHHHhcc
Confidence            45667899999999999999999999999999998763          6777899999999754

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=3.2e-05  Score=61.95  Aligned_cols=74  Identities=20%  Similarity=0.306  Sum_probs=59.3

Q ss_pred             CCCCCcchhccCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhcc
Q 027925           73 ADEKSPYETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMD  147 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~--~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~  147 (217)
                      ....+||.++|...  ..++..++.-|....+++|||+..... ......|.+...+|++||.+|.||-+|+.|=..
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~-~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSF-AGDTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccc-cccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45678999998654  567777888999999999999955431 112346889999999999999999999999754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=7.9e-05  Score=61.07  Aligned_cols=63  Identities=35%  Similarity=0.463  Sum_probs=54.7

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccc-ccHHHHHHHHHHHHHHHc
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEK-GETAEAKFIKIQAAYELL  135 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~-~~~a~~~f~~I~~AY~vL  135 (217)
                      ....+.|.+||+...++..+|+++|+++...+|||+....|.+.+ -..+.+++++|++||+.+
T Consensus       110 ~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         110 LDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             ccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            344799999999999999999999999999999999887765443 467899999999999864

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.02  E-value=0.00067  Score=63.52  Aligned_cols=53  Identities=28%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCc-ccccHHHHHHHHHHHHHHHcC
Q 027925           84 LERDADEEQIKVAYRRLAKFYHPDVYDGRGTL-EKGETAEAKFIKIQAAYELLI  136 (217)
Q Consensus        84 v~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~-~~~~~a~~~f~~I~~AY~vLs  136 (217)
                      |..-.+.++||++||+.++..||||.+..|.. ..+-.+++.|-.+++|+..-.
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            33456899999999999999999999988633 335677888888888876543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00047  Score=56.48  Aligned_cols=72  Identities=25%  Similarity=0.410  Sum_probs=55.3

Q ss_pred             CcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           77 SPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        77 d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      +++.++|+++.  ...+.++..|+.+.+.+|||+....+.. ....+.+.+..++.||.+|.||-+|+.|=....
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~-~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEA-EQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            35556666653  3567799999999999999998775321 223466789999999999999999999976543

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=95.30  E-value=0.04  Score=43.10  Aligned_cols=57  Identities=21%  Similarity=0.179  Sum_probs=42.1

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhH
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEER  140 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~  140 (217)
                      .......||||++..+.++|.+.|.+|-...+|++.+.          --.-.+|..|.+.|..+.+
T Consensus        56 tl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----------fYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   56 TLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----------FYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             -HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----------HHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----------HHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999997643          4666789999998875543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=87.15  E-value=1.3  Score=33.89  Aligned_cols=51  Identities=16%  Similarity=0.277  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChh
Q 027925           87 DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEE  139 (217)
Q Consensus        87 ~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~  139 (217)
                      ..+..+++.+.|.+-++.|||.....  |+++...++-++.++.-.+.|..+.
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~--P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQH--PEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccC--hHHHHhhHHHHHHHHHHHHHHhccC
Confidence            45678899999999999999987763  3455667777888888888887654

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=86.32  E-value=1.7  Score=36.32  Aligned_cols=40  Identities=38%  Similarity=0.449  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCCh
Q 027925           85 ERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE  138 (217)
Q Consensus        85 ~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp  138 (217)
                      +++|+.+||++|+.++..+|--|              ++.-..|..||+.|.=.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd--------------~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD--------------EKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHHHH
Confidence            47899999999999999999333              46677799999876533

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=86.16  E-value=1.4  Score=29.54  Aligned_cols=28  Identities=25%  Similarity=0.489  Sum_probs=25.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHH
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAK  102 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~  102 (217)
                      ..+.|++|||+++.+.+.|-.+|.....
T Consensus         4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    4 VEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999887

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=82.71  E-value=1.4  Score=39.48  Aligned_cols=59  Identities=32%  Similarity=0.389  Sum_probs=45.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccC
Q 027925           88 ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (217)
Q Consensus        88 as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (217)
                      ++..+|..+|+..++.+||++....  .......++.+++|.+||.||.+...|..+|...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFY--EKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHH--HHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            5678899999999999999987410  0001246788999999999999977777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-08
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		5e-08
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		8e-08
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-07
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-07
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		5e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		8e-07
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-06
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-06
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		8e-06
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-05
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		4e-05
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-04
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		2e-04
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		4e-04
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		6e-04

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
           PY  L + R A +  IK AY++LA+ +HPD         K   AE +FI+I  AYE+L +
Sbjct: 19  PYRVLGVSRTASQADIKKAYKKLAREWHPDK-------NKDPGAEDRFIQISKAYEILSN 71
Query: 138 EERRRQYD 145
           EE+R  YD
Sbjct: 72  EEKRTNYD 79

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 70  ANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQ 129
           +N  + K  Y  L ++   D + IK AYRRLA+ YHPDV        K   AEAKF  + 
Sbjct: 22  SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDV-------SKENDAEAKFKDLA 74
Query: 130 AAYELLIDEERRRQYD 145
            A+E+L DE+RR +YD
Sbjct: 75  EAWEVLKDEQRRAEYD 90

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + R+A +++IK AY +LAK YHPD      T +    A+ KF ++  AYE+L DE
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPD------TNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 139 ERRRQYD 145
            +R+QYD
Sbjct: 64  VKRKQYD 70

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + + A E QIK A+ +LA  YHPD         K   AEAKF +I  AYE L D 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDK-------NKSPDAEAKFREIAEAYETLSDA 62
Query: 139 ERRRQYDM 146
            RR++YD 
Sbjct: 63  NRRKEYDT 70

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R A +E +K AYRRLA  +HPD     G  E        F  I  AY +L + 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE-------AFKAIGTAYAVLSNP 62
Query: 139 ERRRQYD 145
           E+R+QYD
Sbjct: 63  EKRKQYD 69

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y  + ++   D + IK AYRRLA+ YHPDV        K   AEA+F ++  A+E+L
Sbjct: 5   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDV-------SKEPDAEARFKEVAEAWEVL 57
Query: 136 IDEERRRQYD 145
            DE+RR +YD
Sbjct: 58  SDEQRRAEYD 67

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  E IK AYR+LA  +HPD        E  E AE +F ++  AYE+L D 
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDK-----NPENKEEAERRFKQVAEAYEVLSDA 66
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRDIYD 73

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++  A  E IK AYR+LA  +HPD        +  E AE KF  +  AYE+L D 
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDK-----NPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRSLYD 73

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y+TL L R A +E+IK AYRR A  YHPD         K   AE KF +I  AY++L
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-------NKEPGAEEKFKEIAEAYDVL 55
Query: 136 IDEERRRQYD 145
            D  +R  +D
Sbjct: 56  SDPRKREIFD 65

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  + IK AYRR A  +HPD        +  E AE KF ++  AYE+L D+
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDK-----NPDNKEFAEKKFKEVAEAYEVLSDK 59
Query: 139 ERRRQYD 145
            +R  YD
Sbjct: 60  HKREIYD 66

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           E + Y+ L ++ +A +E++K AYR+LA  YHPD         K      KF +I  AYE+
Sbjct: 5   ETTYYDVLGVKPNATQEELKKAYRKLALKYHPD---------KNPNEGEKFKQISQAYEV 55
Query: 135 LIDEERRRQYD 145
           L D ++R  YD
Sbjct: 56  LSDAKKRELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L ++ DA + ++K AYR++A  +HPD         K      +F +I  AYE+L DE
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPD---------KNPDGAEQFKQISQAYEVLSDE 61
Query: 139 ERRRQYD 145
           ++R+ YD
Sbjct: 62  KKRQIYD 68

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 77  SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
           S Y  L L+++A  + IK +YR+LA  YHPD        +  E A+ KF +I  A+ +L 
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDK-----NPDNPEAAD-KFKEINNAHAILT 71
Query: 137 DEERRRQYD 145
           D  +R  YD
Sbjct: 72  DATKRNIYD 80

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AYE+L DE
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPD------KNPNNPNAHGDFLKINRAYEVLKDE 77
Query: 139 ERRRQYD 145
           + R++YD
Sbjct: 78  DLRKKYD 84

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AYE+L DE
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPD------KNPNNPNAHGDFLKINRAYEVLKDE 58
Query: 139 ERRRQYD 145
           + R++YD
Sbjct: 59  DLRKKYD 65

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L +   A + QIK AY R    YHPD   G       E AE +F +I  AY +L   
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG-----SAEAAE-RFTRISQAYVVLGSA 73
Query: 139 ERRRQYD 145
             RR+YD
Sbjct: 74  TLRRKYD 80

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDG---RGTLEKGETAEAKFIKIQAAYELL 135
           Y  L  +  A+   +K  Y++L   YHPD        GT+E+      KFI+I  A+++L
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE---CMQKFIEIDQAWKIL 75
Query: 136 IDEERRRQYDMDNRVNP 152
            +EE +++YD+  R  P
Sbjct: 76  GNEETKKKYDL-QRSGP 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	9e-24
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	5e-23
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-21
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	5e-21
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	6e-20
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	7e-20
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	9e-20
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-19
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-19
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-19
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-19
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-19
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	4e-19
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	6e-19
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	7e-19
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	8e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	7e-18
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-17
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-17
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-16
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	4e-15
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	5e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-15
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-14
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-12
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-12
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-09
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-09
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-09
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	1e-08
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-08
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-07
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	2e-06

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 95.4 bits (238), Expect = 9e-24
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 7/72 (9%)

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
           + K  Y  L ++   D + IK AYRRLA+ YHPDV        K   AEAKF  +  A+E
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDV-------SKENDAEAKFKDLAEAWE 78

Query: 134 LLIDEERRRQYD 145
           +L DE+RR +YD
Sbjct: 79  VLKDEQRRAEYD 90

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 89.5 bits (222), Expect = 5e-23
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  Y  L  +  A+   +K  Y++L   YHPD           E    KFI+I  A+++
Sbjct: 9   KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68

Query: 135 LIDEERRRQYDM 146
           L +EE +R+YD+
Sbjct: 69  LGNEETKREYDL 80

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 84.4 bits (209), Expect = 1e-21
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L  +  A+   +K  Y++L   YHPD           E    KFI+I  A+++L +E
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 139 ERRRQYDM 146
           E +++YD+
Sbjct: 79  ETKKKYDL 86

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 82.4 bits (204), Expect = 5e-21
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A +  PY  L + R A +  IK AY++LA+ +HPD         K   AE +FI+I  AY
Sbjct: 14  ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDK-------NKDPGAEDRFIQISKAY 66

Query: 133 ELLIDEERRRQYD 145
           E+L +EE+R  YD
Sbjct: 67  EILSNEEKRTNYD 79

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 80.3 bits (199), Expect = 6e-20
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVLTDS 59

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 79.2 bits (196), Expect = 7e-20
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
                 YE L + R A +E +K AYRRLA  +HPD             A   F  I  AY
Sbjct: 4   GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDK-------NHAPGATEAFKAIGTAY 56

Query: 133 ELLIDEERRRQYD 145
            +L + E+R+QYD
Sbjct: 57  AVLSNPEKRKQYD 69

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 78.8 bits (195), Expect = 9e-20
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+TL L R A +E+IK AYRR A  YHPD         K   AE KF +I  AY++L D 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDK-------NKEPGAEEKFKEIAEAYDVLSDP 58

Query: 139 ERRRQYD 145
            +R  +D
Sbjct: 59  RKREIFD 65

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 79.3 bits (196), Expect = 1e-19
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  + IK AYRR A  +HPD           E AE KF ++  AYE+L D+
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPD-----NKEFAEKKFKEVAEAYEVLSDK 59

Query: 139 ERRRQYD 145
            +R  YD
Sbjct: 60  HKREIYD 66

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 78.9 bits (195), Expect = 1e-19
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + + A E QIK A+ +LA  YHPD         K   AEAKF +I  AYE L D 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDK-------NKSPDAEAKFREIAEAYETLSDA 62

Query: 139 ERRRQYD 145
            RR++YD
Sbjct: 63  NRRKEYD 69

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 78.6 bits (194), Expect = 2e-19
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L +   A + QIK AY R    YHPD   G         A  +F +I  AY +L   
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG------SAEAAERFTRISQAYVVLGSA 73

Query: 139 ERRRQYD 145
             RR+YD
Sbjct: 74  TLRRKYD 80

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 81.4 bits (201), Expect = 3e-19
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           ++ Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AYE+L
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN------NPNAHGDFLKINRAYEVL 55

Query: 136 IDEERRRQYD 145
            DE+ R++YD
Sbjct: 56  KDEDLRKKYD 65

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 77.7 bits (192), Expect = 3e-19
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + R+A +++IK AY +LAK YHPD             A+ KF ++  AYE+L DE
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD------DPKAKEKFSQLAEAYEVLSDE 63

Query: 139 ERRRQYD 145
            +R+QYD
Sbjct: 64  VKRKQYD 70

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 78.3 bits (193), Expect = 4e-19
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
            D +  Y  L  +  +  EQI   ++  A   HPD +           A   F K+Q A 
Sbjct: 17  EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE------NPKAVETFQKLQKAK 70

Query: 133 ELLIDEERRRQYD 145
           E+L +EE R +YD
Sbjct: 71  EILTNEESRARYD 83

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 77.3 bits (191), Expect = 6e-19
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++  A  E IK AYR+LA  +HPD         K E AE KF  +  AYE+L D 
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPD----NKEE-AEKKFKLVSEAYEVLSDS 66

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRSLYD 73

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 76.5 bits (189), Expect = 7e-19
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  E IK AYR+LA  +HPD         K E AE +F ++  AYE+L D 
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE----NKEE-AERRFKQVAEAYEVLSDA 66

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRDIYD 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 77.5 bits (191), Expect = 8e-19
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 75  EKSPYETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
            ++ Y+ LE+ R+  D++++  AYR LA+ +HPD    +   E+   AE +F  I  AYE
Sbjct: 14  LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNK---EEKLLAEERFRVIATAYE 70

Query: 134 LLIDEERRRQYD 145
            L D+E +  YD
Sbjct: 71  TLKDDEAKTNYD 82

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 74.7 bits (184), Expect = 7e-18
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L L+++A  + IK +YR+LA  YHPD             A  KF +I  A+ +L D 
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD------NPEAADKFKEINNAHAILTDA 73

Query: 139 ERRRQYD 145
            +R  YD
Sbjct: 74  TKRNIYD 80

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 73.1 bits (180), Expect = 2e-17
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             E   Y+ L +   A+E+++K  YR+ A  YHPD         K      KF +I  A+
Sbjct: 5   VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPD---------KPTGDTEKFKEISEAF 55

Query: 133 ELLIDEERRRQYD 145
           E+L D ++R  YD
Sbjct: 56  EILNDPQKREIYD 68

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 72.3 bits (178), Expect = 3e-17
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             E   Y+ L ++ DA + ++K AYR++A  +HPD         K      +F +I  AY
Sbjct: 5   VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPD---------KNPDGAEQFKQISQAY 55

Query: 133 ELLIDEERRRQYD 145
           E+L DE++R+ YD
Sbjct: 56  EVLSDEKKRQIYD 68

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 71.3 bits (175), Expect = 1e-16
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
            K  ++ L ++  A  +++  AYR+LA   HPD             +E  F  +  A   
Sbjct: 26  SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK-------CVAPGSEDAFKAVVNARTA 78

Query: 135 LIDEERRRQYD 145
           L+   +     
Sbjct: 79  LLKNIKSGPSS 89

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 61  NQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGET 120
                       + ++  Y+ L ++R+A +++I  AYR+LA  +HPD +      +K   
Sbjct: 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--- 423

Query: 121 AEAKFIKIQAAYELLIDEERRRQYDM 146
           AE KFI I AA E+L D E R+++D 
Sbjct: 424 AEKKFIDIAAAKEVLSDPEMRKKFDD 449

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 67.5 bits (165), Expect = 4e-15
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 74  DEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           +     + L LER A  +   ++ AY +  K +HPD         KG   E K  K+   
Sbjct: 6   ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD---------KG-GDEEKMKKMNTL 55

Query: 132 YELLIDEERRRQYD 145
           Y+ + D  +     
Sbjct: 56  YKKMEDGVKYAHQP 69

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 69.2 bits (169), Expect = 5e-15
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 73  ADEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQA 130
            +     + L LER A  +   ++ AY +  K +HPD         KG   E K  K+  
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD---------KG-GDEEKMKKMNT 57

Query: 131 AYELLIDEERRRQYD 145
            Y+ + D  +     
Sbjct: 58  LYKKMEDGVKYAHQP 72

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 71.7 bits (175), Expect = 7e-15
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             +++ Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AY
Sbjct: 18  RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN------PNAHGDFLKINRAY 71

Query: 133 ELLIDEERRRQYDMDNRVNPMKASQAWMEW 162
           E+L DE+ R++YD               E 
Sbjct: 72  EVLKDEDLRKKYDKYGEKGLEDNQGGQYES 101

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 65.9 bits (161), Expect = 1e-14
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
              +E      E + K   RRL   +HPD        E  + A   F  +Q     L   
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDK-----NPENHDIANEVFKHLQNEINRL--- 70

Query: 139 ERRRQYD 145
           E++   D
Sbjct: 71  EKQAFLD 77

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 60.7 bits (147), Expect = 6e-12
 Identities = 19/150 (12%), Positives = 54/150 (36%), Gaps = 14/150 (9%)

Query: 78  PYETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
            +    L      D + + + ++ L + YHPD +      E+   A  +   I  A++ L
Sbjct: 3   YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ-LAAVQQSATINQAWQTL 61

Query: 136 IDEERRRQYDMD----------NRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQ 185
                R +Y +           + V         +E   +  +    + +  + ++ ++ 
Sbjct: 62  RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRV 121

Query: 186 QLELNLRARRLSRSKVSNNFEFSAVEECSR 215
           +   + R + +     +  ++ +A + C +
Sbjct: 122 KKMFDTRHQLMVEQLDNETWD-AAADTCRK 150

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 73  ADEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQA 130
           AD++   E L+L R    D  +++ AY++ +   HPD         KG +      ++ +
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD---------KGGSHA-LMQELNS 57

Query: 131 AYELLIDEERRRQYDM 146
            +     E    + ++
Sbjct: 58  LWGTFKTEVYNLRMNL 73

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 74  DEKSPYETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
             +  +  ++  R    D  +++  Y++L +  HPD +  R   EK + +E     +  A
Sbjct: 41  PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEK-DFSEKHSTLVNDA 99

Query: 132 YELLIDEERRRQYDMDNR 149
           Y+ L+    R  Y +   
Sbjct: 100 YKTLLAPLSRGLYLLKLH 117

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           WA E + ++ + +      EQ+K  YR+     HPD   G+      + A+  F+++  A
Sbjct: 114 WAGE-TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ---PYEQYAKMIFMELNDA 169

Query: 132 YELLIDEERRRQY 144
           +    ++ ++  Y
Sbjct: 170 WSEFENQGQKPLY 182

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 87  DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM 146
             D+ +++  YR+L   +HPD+          +    +   +  AY  L D  RR QY +
Sbjct: 29  TIDQSRLRKEYRQLQAQHHPDMA---------QQGSEQSSTLNQAYHTLKDPLRRSQYML 79

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG-TLEKGETAEAKFIKIQAAYE 133
             S ++ + L    +   ++ +Y+R     HPD    +G +  +   AE  F  +Q A++
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 79  YETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
            + L L  +   ++++K  +R++    HPD         KG +      KI  A + L  
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPD---------KGGSPF-LATKINEAKDFLEK 66

Query: 138 EERRR 142
               +
Sbjct: 67  RGISK 71

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           WA E + ++ + +      EQ+K  YR+     HP    G+      + A+  F+++  A
Sbjct: 30  WAGE-TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQ---PYEQYAKMIFMELNDA 85

Query: 132 YELLIDE 138
           +    ++
Sbjct: 86  WSEFENQ 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.86
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.86
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.86
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.85
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.85
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.85
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.84
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.84
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.84
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.84
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.84
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.84
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.83
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.83
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.82
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.81
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.81
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.78
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.77
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.76
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.76
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.76
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.75
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.71
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.71
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.7
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.69
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.67
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.66
2guz_A	71	Mitochondrial import inner membrane translocase su	99.63
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.62
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.62
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.11
2guz_B	65	Mitochondrial import inner membrane translocase su	98.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	88.69

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4.5e-22  Score=141.65  Aligned_cols=74  Identities=38%  Similarity=0.587  Sum_probs=67.1

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      ....|||+||||+++++.++||++|++|++++|||+++..      +.+.+.|+.|++||++|+||.+|..||..+....
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   77 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD------PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS   77 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC------TTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------HHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence            4568999999999999999999999999999999999763      4588999999999999999999999999986443

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4.4e-22  Score=142.63  Aligned_cols=74  Identities=38%  Similarity=0.547  Sum_probs=67.1

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      ....+||+||||+++++.++||++|++|+++||||+++..     .+.+.+.|+.|++||++|+||.+|+.||..+...
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4568999999999999999999999999999999998763     3568899999999999999999999999988643

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=7.4e-22  Score=140.28  Aligned_cols=72  Identities=38%  Similarity=0.548  Sum_probs=66.1

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      ....|||+||||+++++.++||++|++|++++|||+++.       +.+.+.|+.|++||++|+||.+|..||..+...
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            456899999999999999999999999999999999865       458899999999999999999999999988644

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.85  E-value=3.9e-22  Score=146.37  Aligned_cols=78  Identities=28%  Similarity=0.458  Sum_probs=69.2

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      ....+||+||||+++++.++||++|++|+++||||+++....+...+.+.+.|++|++||+||+||.+|+.||..+..
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            346899999999999999999999999999999999985433344567899999999999999999999999998753

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.85  E-value=8.7e-22  Score=139.56  Aligned_cols=69  Identities=43%  Similarity=0.617  Sum_probs=63.9

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      .|||+||||+++++.++||++|++|++++|||+++..       .+.+.|+.|++||++|+||.+|..||..+...
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~-------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-------GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT-------THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            6899999999999999999999999999999998753       47899999999999999999999999987543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.85  E-value=1.3e-21  Score=137.34  Aligned_cols=68  Identities=35%  Similarity=0.642  Sum_probs=61.9

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ....+||+||||+++++.++||++|++|++++|||++++         +.+.|+.|++||++|+||.+|+.||.+|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~---------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---------GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT---------CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC---------HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            356899999999999999999999999999999999865         25899999999999999999999999874

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.84  E-value=6.6e-22  Score=147.84  Aligned_cols=73  Identities=41%  Similarity=0.658  Sum_probs=66.5

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (217)
                      ..|||+||||+++++.++||++||+|++++|||+++..      +.++++|++|++||+||+||.+|+.||..+.....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT------CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            36899999999999999999999999999999999763      45889999999999999999999999999875544

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=2e-21  Score=141.27  Aligned_cols=71  Identities=39%  Similarity=0.643  Sum_probs=65.4

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      ...|||+||||+++++.++||++||+|+++||||+++.       +.+.+.|++|++||++|+||.+|..||.++...
T Consensus        15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-------PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-------TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            45899999999999999999999999999999999876       347899999999999999999999999988643

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=1.8e-21  Score=147.01  Aligned_cols=70  Identities=36%  Similarity=0.553  Sum_probs=65.2

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ...+||+||||+++++.++||++|++|++++|||+++..      +.+.++|++|++||+||+||.+|+.||..+.
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN------PEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC------HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            458999999999999999999999999999999999763      5689999999999999999999999999874

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=147.73  Aligned_cols=75  Identities=31%  Similarity=0.341  Sum_probs=67.3

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      ....|||+||||+++++.++||+|||+|+++||||++++.      +.+.++|++|++||+||+||.+|+.||..+....
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN------PKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC------STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            3468999999999999999999999999999999999863      4589999999999999999999999999875443


Q ss_pred             c
Q 027925          153 M  153 (217)
Q Consensus       153 ~  153 (217)
                      .
T Consensus        91 ~   91 (112)
T 2ctq_A           91 S   91 (112)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.1e-21  Score=142.11  Aligned_cols=75  Identities=37%  Similarity=0.504  Sum_probs=67.5

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      ....|||+||||+++++.++||++|++|+++||||+++..     .+.++++|++|++||++|+||.+|+.||..+....
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-----KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-----SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            3568999999999999999999999999999999998763     35789999999999999999999999999876443

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3.5e-21  Score=142.99  Aligned_cols=71  Identities=34%  Similarity=0.508  Sum_probs=65.3

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ....+||+||||+++++.++||++||+|+++||||+++..      +.+.++|++|++||+||+||.+|+.||..+.
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS------AEAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC------SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------HHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            3468999999999999999999999999999999999763      5689999999999999999999999999764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3e-21  Score=140.35  Aligned_cols=70  Identities=43%  Similarity=0.629  Sum_probs=64.9

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ....+||+||||+++++.++||++|++|++++|||+++.       +.+.+.|++|++||++|+||.+|..||..+.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-------PDAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            456899999999999999999999999999999999874       4688999999999999999999999999874

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.83  E-value=2.2e-21  Score=146.34  Aligned_cols=91  Identities=31%  Similarity=0.430  Sum_probs=74.1

Q ss_pred             CCCCCcchhccCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           73 ADEKSPYETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~a-s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      ....|||+||||++++ +.++||+|||+|++++|||++++   ....+.+.+.|++|++||++|+||.+|+.||..+...
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~---~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN---KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS---HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            3468999999999999 99999999999999999999875   1234678999999999999999999999999987532


Q ss_pred             CccchhHHHHHHHHHhhhc
Q 027925          152 PMKASQAWMEWLIKKRKAF  170 (217)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~f  170 (217)
                      .    ..|.+|+..++..|
T Consensus        89 ~----~~~~~~~~~~~~~~  103 (109)
T 2qsa_A           89 D----QRFYNYYQYYRLRA  103 (109)
T ss_dssp             T----CHHHHHHHHHHHC-
T ss_pred             h----HHHHHHHHHHHHHh
Confidence            2    23555655555444

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.83  E-value=3.2e-21  Score=143.41  Aligned_cols=71  Identities=42%  Similarity=0.604  Sum_probs=64.5

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      .|||+||||+++++.++||++|++|++++|||+++..     .+.+.+.|+.|++||++|+||.+|+.||..+...
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            5899999999999999999999999999999998763     3568899999999999999999999999986533

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.2e-20  Score=138.29  Aligned_cols=67  Identities=36%  Similarity=0.589  Sum_probs=62.1

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ...|||+||||+++++.++||++|++|++++|||+++..         .++|++|++||++|+||.+|+.||..+.
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   72 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---------TEKFKEISEAFEILNDPQKREIYDQYGL   72 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---------HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---------HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence            468999999999999999999999999999999998653         4699999999999999999999999863

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.81  E-value=2.8e-20  Score=155.23  Aligned_cols=83  Identities=18%  Similarity=0.349  Sum_probs=68.0

Q ss_pred             HHHhhhcCCC-CCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhH
Q 027925           64 RTVVSAANWA-DEKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEER  140 (217)
Q Consensus        64 ~~~~~~~~~~-~~~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~  140 (217)
                      |..+....+. ...|||+||||+++  ++.++||++||+|+++||||++++.+ ..++..+.++|+.|++||+||+||.+
T Consensus        30 C~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~-~~e~~~a~~~f~~In~AY~vLsdp~~  108 (207)
T 3bvo_A           30 CPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRS-QTEKDFSEKHSTLVNDAYKTLLAPLS  108 (207)
T ss_dssp             CTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             cccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            4444444433 36799999999986  79999999999999999999998752 22344578899999999999999999


Q ss_pred             HHhhhcc
Q 027925          141 RRQYDMD  147 (217)
Q Consensus       141 R~~YD~~  147 (217)
                      |+.||..
T Consensus       109 R~~Yd~~  115 (207)
T 3bvo_A          109 RGLYLLK  115 (207)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999954

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=2.5e-20  Score=148.65  Aligned_cols=76  Identities=30%  Similarity=0.493  Sum_probs=68.2

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (217)
                      ....|||+||||+++++.++||+|||+|++++|||+++..+...+.+.+.+.|+.|++||+||+||.+|+.||..+
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4468999999999999999999999999999999999876444445678899999999999999999999999864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.78  E-value=7.2e-20  Score=150.91  Aligned_cols=70  Identities=33%  Similarity=0.556  Sum_probs=64.7

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (217)
                      .|||+||||+++|+.++||+|||+|++++|||++++.      +.+.++|+.|++||++|+||.+|+.||.+|...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~   71 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN------PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   71 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC------TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------hHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence            5899999999999999999999999999999999763      458899999999999999999999999987643

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.76  E-value=5.6e-20  Score=139.99  Aligned_cols=80  Identities=24%  Similarity=0.331  Sum_probs=66.7

Q ss_pred             CCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC--
Q 027925           75 EKSPYETLELERDADE--EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV--  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~--~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~--  150 (217)
                      ..+||+||||+++++.  ++||+|||+|++++|||++++          .++|++|++||+||+||.+|+.||.++..  
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----------~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~   76 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----------EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----------TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----------HHHHHHHHHHHHHHCCHHHHHHhhhcccccc
Confidence            3689999999999998  999999999999999999765          37899999999999999999999976541  


Q ss_pred             ---CCccchhHHHHHHH
Q 027925          151 ---NPMKASQAWMEWLI  164 (217)
Q Consensus       151 ---~~~~~~~~~~~~~~  164 (217)
                         .+..+...|.+|+.
T Consensus        77 ~~~~~~~g~p~w~~w~~   93 (114)
T 1gh6_A           77 ATEIPTYGTDEWEQWWN   93 (114)
T ss_dssp             CCCCCCCSSSCHHHHHH
T ss_pred             cccCCCCCCchHHHHHh
Confidence               12223456777753

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=3.5e-19  Score=130.04  Aligned_cols=62  Identities=24%  Similarity=0.419  Sum_probs=57.4

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHh
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQ  143 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~  143 (217)
                      ..|||+||||+++++.++||++||+|+++||||+++..       .+.++|++|++||++|+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-------~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-------GSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT-------THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------cHHHHHHHHHHHHHHHCCcccccC
Confidence            58999999999999999999999999999999999763       478999999999999999998864

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.76  E-value=4.9e-20  Score=163.52  Aligned_cols=69  Identities=45%  Similarity=0.659  Sum_probs=0.0

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ...|||+||||+++|+.++||+|||+|+++||||++++       +.++++|++|++||++|+||.+|+.||+++.
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-------NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-------hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            35899999999999999999999999999999999875       3588999999999999999999999999854

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.75  E-value=2.3e-18  Score=139.75  Aligned_cols=72  Identities=18%  Similarity=0.306  Sum_probs=63.8

Q ss_pred             CcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           77 SPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        77 d~Y~iLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      |||+||||++++  +..+||++||+|+++||||++++.+ ..+...+.++|+.|++||+||+||.+|+.||..+.
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~-~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGS-QAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            799999999999  9999999999999999999998752 22334578899999999999999999999998754

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.71  E-value=5.1e-18  Score=121.06  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=55.9

Q ss_pred             CCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925           75 EKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD  145 (217)
Q Consensus        75 ~~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD  145 (217)
                      ..++|+||||+++  ++.++||++||+|++++|||++++          .++|++|++||++|+|+.+|..++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----------~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----------HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------HHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3689999999999  999999999999999999999753          479999999999999999998854

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.71  E-value=1.5e-18  Score=126.28  Aligned_cols=66  Identities=23%  Similarity=0.172  Sum_probs=58.6

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHh
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQ  143 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~  143 (217)
                      ....++|+||||+++++.++||+|||+|+++||||++++.     .+.++++|++|++||++|+|...|..
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~-----~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-----HDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-----HHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHHHHhhccccc
Confidence            3457899999999999999999999999999999998763     35689999999999999999877733

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.70  E-value=1e-18  Score=141.84  Aligned_cols=65  Identities=25%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             CCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           75 EKSPYETLELERDAD--EEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as--~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ..+||+||||+++|+  .++||+|||+|++++|||++++          +++|++|++||++|+||.+|+.||++|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  6999999999999999999865          2689999999999999999999999884

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.69  E-value=3.6e-18  Score=139.78  Aligned_cols=67  Identities=27%  Similarity=0.394  Sum_probs=59.9

Q ss_pred             CCCCCcchhc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925           73 ADEKSPYETL------ELER-DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD  145 (217)
Q Consensus        73 ~~~~d~Y~iL------gv~~-~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD  145 (217)
                      ....|||+||      |+++ +++.++||++||+|+++||||++++         +.++|+.|++||+||+||.+|+.||
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------a~~~f~~i~~AY~vL~dp~~R~~Yd   78 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---------GSEQSSTLNQAYHTLKDPLRRSQYM   78 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---------CSSGGGSHHHHHHHHHSHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---------HHHHHHHHHHHHHHHcChHHHHHHH
Confidence            3468999999      4665 8999999999999999999999865         4578999999999999999999999


Q ss_pred             ccC
Q 027925          146 MDN  148 (217)
Q Consensus       146 ~~~  148 (217)
                      ..+
T Consensus        79 ~~l   81 (181)
T 3uo3_A           79 LKL   81 (181)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.67  E-value=1.2e-17  Score=125.44  Aligned_cols=65  Identities=17%  Similarity=0.245  Sum_probs=56.1

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-CcccccHHHHHHHHHHHHHHHcCChh
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG-TLEKGETAEAKFIKIQAAYELLIDEE  139 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g-~~~~~~~a~~~f~~I~~AY~vLsdp~  139 (217)
                      ...+||+|||++. |+.++||+|||+|+++||||++++.| ++++...|+++|+.|++||++|+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3479999999996 99999999999999999999987643 23334568999999999999999985

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.66  E-value=1.8e-17  Score=135.39  Aligned_cols=66  Identities=20%  Similarity=0.390  Sum_probs=59.7

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhh
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY  144 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y  144 (217)
                      .++|+||||+++++.++||+|||+|+++||||++++..   ....++++|++|++||+||+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~---~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP---YEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCT---THHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcc---hHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            69999999999999999999999999999999997641   1124899999999999999999999987

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=6.7e-17  Score=112.88  Aligned_cols=57  Identities=21%  Similarity=0.233  Sum_probs=51.2

Q ss_pred             CCCcchhccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHH
Q 027925           75 EKSPYETLELER-DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERR  141 (217)
Q Consensus        75 ~~d~Y~iLgv~~-~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R  141 (217)
                      ..++|+||||++ +++.++||++||+|++++|||++++          .+.|++|++||++|+|+..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----------~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----------PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----------HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHhhhhhc
Confidence            468999999999 7999999999999999999999633          46999999999999998655

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.62  E-value=8.6e-17  Score=117.82  Aligned_cols=59  Identities=19%  Similarity=0.332  Sum_probs=52.2

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID  137 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsd  137 (217)
                      .++|++|||++.|+.++||+|||+++++||||++++..   ....++++|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~---~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP---YEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTST---THHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch---hHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999997641   123588999999999999964

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.62  E-value=3.6e-17  Score=158.16  Aligned_cols=74  Identities=31%  Similarity=0.527  Sum_probs=40.8

Q ss_pred             CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      ....|||+||||+++|+.++||+|||+|+++||||++++.      +.+.++|++|++||++|+||.+|+.||++|....
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~------~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN------PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------hHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            4568999999999999999999999999999999998753      4588999999999999999999999999986443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.11  E-value=3.7e-11  Score=105.47  Aligned_cols=70  Identities=40%  Similarity=0.658  Sum_probs=57.5

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhcc
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMD  147 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~  147 (217)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+..   .+++.+++.|+.|++||++|+||++|..||.+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~---~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE---EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH---HHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            45899999999999999999999999999999998653   12356899999999999999999999999974

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.92  E-value=8.3e-10  Score=75.52  Aligned_cols=53  Identities=17%  Similarity=0.093  Sum_probs=46.8

Q ss_pred             CCcchhccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCCh
Q 027925           76 KSPYETLELERD---ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE  138 (217)
Q Consensus        76 ~d~Y~iLgv~~~---as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp  138 (217)
                      ...|.||||+++   ++.++|+++||+|...+|||+.+.          .....+|++|+++|...
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----------~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----------FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHHHHH
Confidence            457899999999   999999999999999999999654          47888999999999643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=88.69  E-value=0.2  Score=47.24  Aligned_cols=48  Identities=13%  Similarity=0.215  Sum_probs=37.4

Q ss_pred             CCCCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHH
Q 027925           73 ADEKSPYETLELERDADE--EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL  134 (217)
Q Consensus        73 ~~~~d~Y~iLgv~~~as~--~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~v  134 (217)
                      ....+||.+||++-+...  .+|+++||+|++..+++              .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------------HHHHHHHHHhccc
Confidence            334569999999776655  67999999999965443              4788889888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	7e-17
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	5e-13
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-12
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	9e-12
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-10
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	3e-10
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-10
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	5e-07

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 7e-17
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  Y  L  +  A+   +K  Y++L   YHPD           E    KFI+I  A+++
Sbjct: 15  KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74

Query: 135 LIDEERRRQYDM 146
           L +EE +++YD+
Sbjct: 75  LGNEETKKKYDL 86

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.7 bits (147), Expect = 5e-13
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 55  ESWFRVNQR--RTVVSAANWA--DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYD 110
             W    +R  R ++S  +      ++ ++ + +      EQ+K  YR+     HPD   
Sbjct: 8   LEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKAT 67

Query: 111 GRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY 144
           G+      + A+  F+++  A+    ++ ++  Y
Sbjct: 68  GQ---PYEQYAKMIFMELNDAWSEFENQGQKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (139), Expect = 4e-12
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 79  YETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
           +    L      D + + + ++ L + YHPD +      E+   A  +   I  A++ L 
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ-LAAVQQSATINQAWQTLR 62

Query: 137 DEERRRQYDMD 147
               R +Y + 
Sbjct: 63  HPLMRAEYLLS 73

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 56.6 bits (136), Expect = 9e-12
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           +  YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVL 56

Query: 136 IDEERRRQYDM 146
            D ++R  YD 
Sbjct: 57  TDSQKRAAYDQ 67

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 53.5 bits (128), Expect = 1e-10
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 71  NWADEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKI 128
           + AD++   E L+L R    D  +++ AY++ +   HPD             + A   ++
Sbjct: 6   SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----------SHALMQEL 55

Query: 129 QAAYELLIDEERRRQYDM 146
            + +     E    + ++
Sbjct: 56  NSLWGTFKTEVYNLRMNL 73

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 3e-10
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y+TL L R A +E+IK AYRR A  YHPD             AE KF +I  AY++L
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-------EPGAEEKFKEIAEAYDVL 55

Query: 136 IDEERRRQYDM 146
            D  +R  +D 
Sbjct: 56  SDPRKREIFDR 66

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 5e-10
 Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 5/77 (6%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K     +E      E + K   RRL   +HPD       +         F  +Q     L
Sbjct: 16  KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIA-----NEVFKHLQNEINRL 70

Query: 136 IDEERRRQYDMDNRVNP 152
             +    Q         
Sbjct: 71  EKQAFLDQNADRASRRT 87

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 44.8 bits (105), Expect = 5e-07
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 74  DEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           +     + L LER A  +   ++ AY +  K +HPD                K  K+   
Sbjct: 6   ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----------KMKKMNTL 55

Query: 132 YELLIDEERRRQYD 145
           Y+ + D  +     
Sbjct: 56  YKKMEDGVKYAHQP 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.86
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.83
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.78
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.75
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.69
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.68

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.8e-24  Score=148.26  Aligned_cols=70  Identities=43%  Similarity=0.715  Sum_probs=65.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (217)
                      .+|||+||||+++||.++||+||++|++++|||++++.      +.+++.|..|++||+||+||.+|..||++|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTT------CHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            47999999999999999999999999999999998764      56788999999999999999999999998864

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.7e-23  Score=143.25  Aligned_cols=70  Identities=43%  Similarity=0.599  Sum_probs=64.4

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      +|||+||||+++++.++|++||+++++++|||++..       +.+.+.|+.|++||+||+||.+|+.||++|..+.
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-------~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-------PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-------hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            699999999999999999999999999999999876       3478899999999999999999999999886443

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=6.2e-23  Score=149.56  Aligned_cols=76  Identities=29%  Similarity=0.482  Sum_probs=68.7

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ..+|||+||||+++++.++||++|++|+++||||++.........+.+++.|+.|++||+||+||.+|+.||..+.
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            3579999999999999999999999999999999998765555567789999999999999999999999998764

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.83  E-value=3.8e-22  Score=150.09  Aligned_cols=68  Identities=22%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             CCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925           75 EKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (217)
Q Consensus        75 ~~d~Y~iLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (217)
                      ..+||+||||+++|  +.++||+|||+||++||||++++.          ++|++|++||+||+||.+|+.||..+....
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~----------e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~   76 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----------EKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----------TTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH----------HHHHHHHHHHHHhCCHHHHHHHhccCCCCc
Confidence            46899999999998  788999999999999999998753          579999999999999999999998865433

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.2e-20  Score=128.29  Aligned_cols=71  Identities=18%  Similarity=0.312  Sum_probs=62.2

Q ss_pred             CcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccC
Q 027925           77 SPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (217)
Q Consensus        77 d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (217)
                      |||+||||+++  ++.++||++|+++++++|||+..+.+ +.+...+.+.|+.|++||+||+||.+|+.|+...
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGS-QAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccch-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            79999999985  56899999999999999999987653 3335668899999999999999999999998754

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.75  E-value=2.6e-19  Score=126.09  Aligned_cols=65  Identities=18%  Similarity=0.297  Sum_probs=59.6

Q ss_pred             CCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           75 EKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        75 ~~d~Y~iLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      ..+||+||||++++  +.++||+||++++++||||++++          .++|++|++||++|+|+.+|..||..+.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----------~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----------HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----------HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----------HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            46899999999987  99999999999999999999754          4789999999999999999999998764

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.6e-18  Score=121.11  Aligned_cols=67  Identities=22%  Similarity=0.218  Sum_probs=59.8

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (217)
Q Consensus        75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (217)
                      .+++|+||||+++++.++||+|||+|+++||||++++.     .+.++++|+.|++||++|+   ++..||+...
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~   81 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-----HDIANEVFKHLQNEINRLE---KQAFLDQNAD   81 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-----HHHHHHHHHHHHHHHHHHH---HHTTCSSSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch-----hhHHHHHHHHHHHHHHHHH---HHHHhhccch
Confidence            47999999999999999999999999999999998774     4678999999999999996   5677887654

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=3.9e-18  Score=124.73  Aligned_cols=68  Identities=19%  Similarity=0.373  Sum_probs=60.8

Q ss_pred             CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhh
Q 027925           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY  144 (217)
Q Consensus        74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y  144 (217)
                      ...++|++|||...++.++||+|||++++.+|||++++.+   ....+++.|+.|++||++|+||.+|+.|
T Consensus        31 ~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~---~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP---YEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTST---THHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChH---HHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3467899999999999999999999999999999987652   2345889999999999999999999987