Citrus Sinensis ID: 027937

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MAAATTTQLTFFPLVLRLSDPRRHHSCKFLSVPTQSSSALALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEcccccccHHHHHcccHHHHHcccccccccccccccHHHHcccccccccccccccccccccccHHcHHHccccccccccccccHHHHHHHcccccccEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEcccccEEEEEEEccccccccHHHHHHHHHHHcHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEcccccccccccccEEEEEHHHHHccccccccccccHHHHHHHccHHHcccccccEEEEcccccHHHHHHccccccccccccccHHHHHHHHHHccccEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEEEEccccccccccHEEHHHHHHHHHccccccccEcc
Coil and Loop (DISEMBL)
maaatttqlTFFPlvlrlsdprrhhsckflsvptqsssalALRVTTTTAlgsdmlgdfgardpfpaelesgfgekvlgnvdtehkilipklsalslaeqdcspaspfqtpmsaDDAKKLLKKVVGWRlleeegglkLQCLWKLRDFKCGVELINRIYKVTEaaghfpnlhleqpnqVRAELWtssigglsmNDFIVAAKldqirtsdlaprkriwa
Flexible Loop (DISEMBL)
maaatttqltffplVLRLSDPRRHHSCKFlsvptqsssalaLRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPAspfqtpmsaddAKKLLKKVVGWRLLeeegglklqclWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAkldqirtsdlaprkriwa
Low Complexity Region (SEG)
MAAATTTQLTFFPLVLRLSDPRRHHSCKFLSVPTQsssalalrvttttalGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA
Disordered region (IsUnstruct)
******TQLTFFPLVLRLSDPRRHHSCKFLSVP****SALALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSAL***********************KLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIR************
Disordered Region (DISOPRED)
************PLVLR*******************************ALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPK************************DAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIW*
Disordered Region (DISEMBL)
MAAATTTQLTFFPLVLRLSDPRRHHSCKF**********LALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA
Disordered Region (DISPRO)
*****TTQLTFFPLVLRLSDPRRHHSCKFLSVPTQSSSALALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAATTTQLTFFPLVLRLSDPRRHHSCKFLSVPTQSSSALALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
B0JQV0	116	Putative pterin-4-alpha-c	yes	no	0.495	0.922	0.379	5e-15
Q7NM43	116	Putative pterin-4-alpha-c	yes	no	0.504	0.939	0.354	2e-13
B3ECB9	113	Putative pterin-4-alpha-c	yes	no	0.481	0.920	0.342	2e-12
Q8KFI4	111	Putative pterin-4-alpha-c	yes	no	0.495	0.963	0.305	6e-12
B9LPE3	116	Putative pterin-4-alpha-c	yes	no	0.5	0.931	0.309	2e-11
Q3J910	113	Putative pterin-4-alpha-c	yes	no	0.5	0.955	0.330	8e-11
B3QQ83	111	Putative pterin-4-alpha-c	yes	no	0.495	0.963	0.277	3e-10
Q60BH8	114	Putative pterin-4-alpha-c	yes	no	0.509	0.964	0.318	3e-10
Q1QXY2	118	Putative pterin-4-alpha-c	yes	no	0.518	0.949	0.309	3e-10
A1TZA3	111	Putative pterin-4-alpha-c	yes	no	0.5	0.972	0.321	3e-10

>sp|B0JQV0|PHS_MICAN Putative pterin-4-alpha-carbinolamine dehydratase OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_39970 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 96  LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
           LA+Q C P     +P++A++   L  K+  W LLE EG  +LQ L+K  +F+  +   N 
Sbjct: 4   LAQQKCQPYQSGSSPITAEEITALQAKIPDWNLLEYEGIPRLQKLYKFANFQGAIAFTNA 63

Query: 156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           + +  E  GH P L L +  +V    WT  +GGL  NDFI+AA+ D I
Sbjct: 64  VGEAAEKEGHHPAL-LTEWGKVTVSWWTHDVGGLHQNDFIMAARTDDI 110

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 6

>sp|Q7NM43|PHS1_GLOVI Putative pterin-4-alpha-carbinolamine dehydratase 1 OS=Gloeobacter violaceus (strain PCC 7421) GN=gll0926 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 94  LSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELI 153
           ++L EQ C+   P    + A +  +L  ++  WR++E EG  +L+  ++LRDF+  +   
Sbjct: 1   MNLTEQRCTACRPDAPRVGAAEIAELHPQIPAWRIVEIEGTPRLERQFRLRDFREAIAFT 60

Query: 154 NRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
            R+ +  EA GH P L L +   V+   WT +I GL  NDF++AAK D I
Sbjct: 61  VRVGEEAEAEGHHPAL-LTEWGSVKVSWWTHAIAGLHRNDFVMAAKTDAI 109

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|B3ECB9|PHS_CHLL2 Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=Clim_1125 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 95  SLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELIN 154
            L    C P +   +P++AD+  +L +++  W ++ EEG ++L+  +   DF   +   N
Sbjct: 3   ELKHMACVPCAEAGSPLAADEIDRLRQELPDWEVVTEEGMVRLRRTFTFPDFGQALAFTN 62

Query: 155 RIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAK 199
           R+ ++ EA GH P L + +  +V  E WT S GGL  NDFI+AA+
Sbjct: 63  RVGELAEAEGHHPRL-VTEWGRVTVEWWTHSAGGLHRNDFIMAAR 106

Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|Q8KFI4|PHS_CHLTE Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT0342 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 96  LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
           L  + C P      PM++++ ++ L  +  W L+++ G  KL  ++  +DF+  ++  NR
Sbjct: 4   LENKHCVPCEGTAAPMASEELQRQLSSLPEWTLVDDSGTSKLVRVFTFKDFQSALDFTNR 63

Query: 156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           + ++ EA GH P L L +  +V    WT +IGG+ +ND I+A K +++
Sbjct: 64  VGQLAEAEGHHPAL-LTEWGKVTVSWWTHAIGGIHLNDVIMATKTEKL 110

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|B9LPE3|PHS_HALLT Putative pterin-4-alpha-carbinolamine dehydratase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=Hlac_1646 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 96  LAEQDCSPASPFQTPMSADDAKKLLKKVVG-WRLLEEEGGLKLQCLWKLRDFKCGVELIN 154
           LA++   PA     P++ D+  + L ++   W ++++     L+  ++  DF   +   N
Sbjct: 5   LADEPVEPADEGAEPLTDDEYAEYLAELGPVWEVVDDH---HLEATYEFDDFADALAFTN 61

Query: 155 RIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSD 207
            I ++ EA GH P+LHL    +V  E+W+  IGGL  +DF++AA++D+I   D
Sbjct: 62  EIGELAEAEGHHPDLHLSW-GEVGVEMWSHDIGGLHESDFVMAARMDRIYDGD 113

Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) (taxid: 416348)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|Q3J910|PHS_NITOC Putative pterin-4-alpha-carbinolamine dehydratase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_2226 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 95  SLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELIN 154
            L+   C    P    +S D+ ++L  +V  W ++EE+   +LQ ++K  +F   ++  N
Sbjct: 3   DLSTMQCEACRPEAPRVSEDEIRELHPQVPDWEIIEEDEVRRLQRVFKFGNFAEALDFTN 62

Query: 155 RIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           +   + E AGH P + L +  QV    W+  I GL  NDFI+AAK DQ+
Sbjct: 63  KTGALAEEAGHHPAI-LTEYGQVTVTWWSHKIKGLHKNDFIMAAKTDQL 110

Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|B3QQ83|PHS_CHLP8 Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_1693 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 96  LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
           L ++ C P    + PM+ ++ ++ L  +  W ++++ G  KL  ++  +DF   ++   R
Sbjct: 4   LEKKHCVPCEGTEAPMAPEELQRQLSHIPDWNVVDDSGTPKLVRVFTFKDFNDALDFTVR 63

Query: 156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           + ++ E+ GH P L L +  +V    WT +IGG+ +ND I+A K +++
Sbjct: 64  VGQLAESEGHHPAL-LTEWGKVTVSWWTHAIGGIHLNDVIMATKTEKL 110

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|Q60BH8|PHS_METCA Putative pterin-4-alpha-carbinolamine dehydratase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=MCA0497 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 91  LSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGV 150
           + A SL  + C+P      P++A++A+KLL  V  W L  ++   KL+  ++  +F   +
Sbjct: 1   MDACSLTAKQCTPCQGGIPPLTAEEAEKLLVHVPRWEL--KDAATKLKRTFRFENFMEAL 58

Query: 151 ELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           +   ++ ++ EA GH P++ +      R E  T  I GL  NDFI+AAK+D++
Sbjct: 59  DFARKVGELCEAEGHHPDIGIGW-GYCRVEFQTHKINGLHENDFIMAAKVDEL 110

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|Q1QXY2|PHS_CHRSD Putative pterin-4-alpha-carbinolamine dehydratase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=Csal_1321 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 96  LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
           L+E  C   S     +S  +   L   V  WR++E +G ++L+  +  R+F   +   N+
Sbjct: 4   LSELKCEACSADAPTVSEAEMHSLGADVPEWRIVERDGIMQLEREFTFRNFAQALAFTNQ 63

Query: 156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDL 208
           +  + EA GH P L + +  +V    W+  IGGL  NDFI+AA+ D++  S++
Sbjct: 64  VGDLAEAQGHHPAL-ITEWGKVTVTWWSHKIGGLHKNDFIMAARTDEVAQSNV 115

Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

>sp|A1TZA3|PHS_MARAV Putative pterin-4-alpha-carbinolamine dehydratase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=Maqu_0976 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 95  SLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELIN 154
           +L +Q CS  S     ++  + + LLK V  W+L+ ++G  +LQ ++  ++F       N
Sbjct: 3   NLGQQSCSACSADAPQVTDAEKQTLLKDVPEWQLIVQDGEEQLQRVFTFKNFVQAQAFTN 62

Query: 155 RIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           ++  + E  GH P + LE   +     WT  IGGL  NDFI+AA+ D++
Sbjct: 63  KVADLAEEEGHHPAILLEW-GKATVRWWTHKIGGLHKNDFIMAARTDEL 110

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
225454954	210	PREDICTED: putative pterin-4-alpha-carbi	0.972	1.0	0.694	3e-79
255539969	208	pterin-4-alpha-carbinolamine dehydratase	0.949	0.985	0.702	6e-79
147834234	210	hypothetical protein VITISV_038441 [Viti	0.972	1.0	0.689	3e-78
224114631	168	predicted protein [Populus trichocarpa]	0.763	0.982	0.793	1e-76
388515021	209	unknown [Lotus japonicus]	0.925	0.956	0.666	3e-75
356499598	215	PREDICTED: putative pterin-4-alpha-carbi	0.833	0.837	0.723	2e-74
224136384	165	predicted protein [Populus trichocarpa]	0.754	0.987	0.792	5e-74
356534789	216	PREDICTED: uncharacterized protein LOC10	0.893	0.893	0.673	6e-73
449451856	212	PREDICTED: putative pterin-4-alpha-carbi	0.787	0.801	0.736	2e-70
297795917	220	hypothetical protein ARALYDRAFT_495179 [	0.898	0.881	0.606	1e-64

>gi|225454954|ref|XP_002280495.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase [Vitis vinifera]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/216 (69%), Positives = 169/216 (78%), Gaps = 6/216 (2%)

Query: 1   MAAATTTQLTFFPLVLRLSDPRRHHSCKFLSVPTQSSSALALRVTTTTALGSDMLGDFGA 60
           MA ATTT    F L L      R      L+ PT+             A+G D+LGDFGA
Sbjct: 1   MAMATTTP-GLFSLPLSPQPQARSFQLIHLASPTRPRLG-----RVALAVGGDLLGDFGA 54

Query: 61  RDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLL 120
           RDPFPAE+ES FGEKVLGN+DTEHKILIP +SALSLA+Q+CSP S    PM+ +DA+KLL
Sbjct: 55  RDPFPAEIESKFGEKVLGNLDTEHKILIPNVSALSLAQQECSPVSGLDPPMTEEDAQKLL 114

Query: 121 KKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAE 180
           +KVVGWRL +E G LKLQCLWKLRDFKCGVELINRIYKV EAAGHFPNLHLEQPNQ+RAE
Sbjct: 115 RKVVGWRLSDEAGVLKLQCLWKLRDFKCGVELINRIYKVAEAAGHFPNLHLEQPNQIRAE 174

Query: 181 LWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216
           LWT+SIGGLSMNDFIVAAK+D+IRTSDL P+KRIWA
Sbjct: 175 LWTASIGGLSMNDFIVAAKIDEIRTSDLVPKKRIWA 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539969|ref|XP_002511049.1| pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis] gi|223550164|gb|EEF51651.1| pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 149/212 (70%), Positives = 171/212 (80%), Gaps = 7/212 (3%)

Query: 6   TTQLTF-FPLVLRLSDPRRHHSCKFLSVPTQSSSALALRVTTTTALGSDMLGDFGARDPF 64
           TT L+F  P + +   PR H      SV T +     +    T A+G D+LGDFGARDPF
Sbjct: 3   TTHLSFTIPTLPKPCLPRYHRYG--FSVLTGNR----MVTVKTRAMGGDLLGDFGARDPF 56

Query: 65  PAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVV 124
           PAE+ES F EKVLGNVDTEHKILIPK+SALSLA+Q+C+P SP Q PMS DDA+ LL+KVV
Sbjct: 57  PAEIESRFAEKVLGNVDTEHKILIPKVSALSLAQQECTPVSPLQAPMSKDDAQMLLRKVV 116

Query: 125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTS 184
           GWRLL+EE GLKLQCLWKLRDFKCGVELINRIYKV EA+G+FP+LHLEQ  QVRAELWT 
Sbjct: 117 GWRLLDEEDGLKLQCLWKLRDFKCGVELINRIYKVAEASGNFPDLHLEQRIQVRAELWTE 176

Query: 185 SIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216
           SIGGLSMNDFIVAAK+D+I+TSDL PRKR+WA
Sbjct: 177 SIGGLSMNDFIVAAKIDEIKTSDLVPRKRVWA 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834234|emb|CAN70883.1| hypothetical protein VITISV_038441 [Vitis vinifera]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 168/216 (77%), Gaps = 6/216 (2%)

Query: 1   MAAATTTQLTFFPLVLRLSDPRRHHSCKFLSVPTQSSSALALRVTTTTALGSDMLGDFGA 60
           MA ATTT    F L L      R      L+ PT+             A+G D+LGDFGA
Sbjct: 1   MAMATTTP-GLFSLPLSPQPQARSFQLIHLASPTRPRLG-----RVALAVGGDLLGDFGA 54

Query: 61  RDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLL 120
           RDPFPAE+ES FGEKVLGN+DTEHKILIP +SALSLA+Q+CSP S    PM+ +DA+KLL
Sbjct: 55  RDPFPAEIESKFGEKVLGNLDTEHKILIPNVSALSLAQQECSPVSGLDPPMTEEDAQKLL 114

Query: 121 KKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAE 180
           +KVVGWRL +E G LKLQCLWKLRDFKCGVELINRI+KV EAAGHFPNLHLEQPNQ+RAE
Sbjct: 115 RKVVGWRLSDEAGVLKLQCLWKLRDFKCGVELINRIFKVAEAAGHFPNLHLEQPNQIRAE 174

Query: 181 LWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216
           LWT+SIGGLSMNDFIVAAK+D IRTSDL P+KRIWA
Sbjct: 175 LWTASIGGLSMNDFIVAAKIDXIRTSDLVPKKRIWA 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114631|ref|XP_002332328.1| predicted protein [Populus trichocarpa] gi|222832575|gb|EEE71052.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 153/165 (92%)

Query: 52  SDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPM 111
            D LG+FGARDPFPAE+ESGF EKVLGN +TEHKILIP +SALSL++Q+C+P SP Q PM
Sbjct: 4   GDKLGEFGARDPFPAEIESGFAEKVLGNGNTEHKILIPTVSALSLSQQECTPISPLQDPM 63

Query: 112 SADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHL 171
           S DDA+KLLKKV+GWRLL+EEGGLKLQCLWKLRDFKCGVEL+NRIYK TE+ GHFPN+HL
Sbjct: 64  SKDDAQKLLKKVLGWRLLDEEGGLKLQCLWKLRDFKCGVELVNRIYKATESCGHFPNVHL 123

Query: 172 EQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216
           EQPNQVRAELWT+S+GGLS+NDFIVAAK+D+I+TSDL P+KR+WA
Sbjct: 124 EQPNQVRAELWTASLGGLSLNDFIVAAKIDEIKTSDLVPKKRVWA 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515021|gb|AFK45572.1| unknown [Lotus japonicus]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/207 (66%), Positives = 168/207 (81%), Gaps = 7/207 (3%)

Query: 12  FPLVLRLSDPRRHHSCKFLSVPTQSSSALALRVTTTTAL--GSDMLGDFGARDPFPAELE 69
           FPLV  +   +R+ S   +++ ++S     LR T+T      +D LGDFGARDPFPAE+E
Sbjct: 8   FPLVHPIFLTQRNPSPHSITLTSKS-----LRSTSTIVRVDANDFLGDFGARDPFPAEIE 62

Query: 70  SGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLL 129
           S FG+KVLGN DTEHKILIP ++ALSL++Q+C+P SP Q P+S DDA KLL+KVVGWRL+
Sbjct: 63  SQFGDKVLGNNDTEHKILIPNIAALSLSQQNCTPVSPLQHPISEDDASKLLRKVVGWRLV 122

Query: 130 EEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGL 189
            EE GLKLQCLWKLRDFK GVELINRI KV EA GHFPN+HLEQPNQ+RA LWT+SIGGL
Sbjct: 123 HEESGLKLQCLWKLRDFKSGVELINRISKVVEAEGHFPNIHLEQPNQIRAVLWTASIGGL 182

Query: 190 SMNDFIVAAKLDQIRTSDLAPRKRIWA 216
           SMNDF+VAAK+ +I+TSDLAP+KR+WA
Sbjct: 183 SMNDFVVAAKIGEIKTSDLAPKKRVWA 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499598|ref|XP_003518625.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase 1-like [Glycine max]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 159/181 (87%), Gaps = 1/181 (0%)

Query: 36  SSSALALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALS 95
           +SS+ +L VT    + ++ LGDFGARDPFPAELES FGEKVLG  +TEHKILIP ++AL+
Sbjct: 36  ASSSPSLLVTRAIDV-NEFLGDFGARDPFPAELESSFGEKVLGYSNTEHKILIPTITALA 94

Query: 96  LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
           L++Q+C+P SP Q P+S DDA+ L++KVVGWRL+ EEGGLK+QCLWKLRDFKCGVELINR
Sbjct: 95  LSQQECAPVSPSQPPISLDDAQTLIRKVVGWRLVNEEGGLKIQCLWKLRDFKCGVELINR 154

Query: 156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIW 215
           I KV EA GHFPN++LEQPNQVRAELWT+SIGGL+MNDFIVAAK+D+I+TSDL PRKR+W
Sbjct: 155 ISKVVEALGHFPNIYLEQPNQVRAELWTASIGGLTMNDFIVAAKIDEIKTSDLVPRKRVW 214

Query: 216 A 216
           A
Sbjct: 215 A 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136384|ref|XP_002322316.1| predicted protein [Populus trichocarpa] gi|222869312|gb|EEF06443.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 130/164 (79%), Positives = 150/164 (91%), Gaps = 1/164 (0%)

Query: 53  DMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMS 112
           D LG+FGARDPFPAE+ES F EKVLGNVDTEHKILIP +SALSL++Q+C+P SP Q PMS
Sbjct: 3   DQLGEFGARDPFPAEIESAFAEKVLGNVDTEHKILIPTVSALSLSQQECTPISPLQDPMS 62

Query: 113 ADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLE 172
            DDA+KLLKKV+GWRLL++E GLKLQCLWKLRDFKCGVEL+NRIYKVTE+ GHFP++HLE
Sbjct: 63  KDDAQKLLKKVLGWRLLDKEVGLKLQCLWKLRDFKCGVELVNRIYKVTESCGHFPDVHLE 122

Query: 173 QPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216
           Q NQVRAELWT S+GGLSM DFIVAAK+D+I+TSDL PRKR+WA
Sbjct: 123 Q-NQVRAELWTESLGGLSMTDFIVAAKIDEIKTSDLVPRKRVWA 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534789|ref|XP_003535934.1| PREDICTED: uncharacterized protein LOC100813755 [Glycine max]

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 134/199 (67%), Positives = 160/199 (80%), Gaps = 6/199 (3%)

Query: 23  RHHSC-----KFLSVPTQSSSALALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKVL 77
           RH +C      FL    + + + +L VT      ++ LGDFGARDPFPAELES FGEKVL
Sbjct: 19  RHMACPPRVPSFLFTRGRGAWSPSLLVTRAID-ANEFLGDFGARDPFPAELESSFGEKVL 77

Query: 78  GNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKL 137
           G  +TEHKILIP ++AL L++Q+C+P S  Q P+S DDA+ L++KVVGWRL+ EE GLK+
Sbjct: 78  GYGNTEHKILIPTITALGLSQQECAPVSSAQPPISLDDAQTLIRKVVGWRLVNEENGLKI 137

Query: 138 QCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVA 197
           QCLWKLRDFKCGVELINRI KV EA GHFPN++LEQPNQVRAELWT+SIGGLSMNDFIVA
Sbjct: 138 QCLWKLRDFKCGVELINRISKVVEAEGHFPNIYLEQPNQVRAELWTASIGGLSMNDFIVA 197

Query: 198 AKLDQIRTSDLAPRKRIWA 216
           AK+DQI+TSDL PRKR+WA
Sbjct: 198 AKIDQIKTSDLVPRKRVWA 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451856|ref|XP_004143676.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase-like [Cucumis sativus] gi|449488625|ref|XP_004158118.1| PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase-like [Cucumis sativus]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 146/171 (85%), Gaps = 1/171 (0%)

Query: 47  TTALGSDMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASP 106
           T ++G+D+LGDFGARDPFP E+ S FGEKV+G  DTEHKILIP   AL+L+EQ+C P S 
Sbjct: 42  TVSVGTDILGDFGARDPFPEEIASNFGEKVIGFSDTEHKILIPNARALALSEQECVPVSS 101

Query: 107 FQTPMSADDAKKLLKKVVGWRLLEE-EGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGH 165
            Q PM+ D+AKKLL+KVVGW+L++   G LKLQCLWKLRDFKC VELINRI KV E  GH
Sbjct: 102 LQAPMAEDEAKKLLRKVVGWKLVDGGRGELKLQCLWKLRDFKCSVELINRICKVVENVGH 161

Query: 166 FPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216
           FP+LHLEQPNQVRAELWTSSIGGLSMND+IVAAK+D+I+TSDLAPRKR WA
Sbjct: 162 FPDLHLEQPNQVRAELWTSSIGGLSMNDYIVAAKIDEIKTSDLAPRKRAWA 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795917|ref|XP_002865843.1| hypothetical protein ARALYDRAFT_495179 [Arabidopsis lyrata subsp. lyrata] gi|297311678|gb|EFH42102.1| hypothetical protein ARALYDRAFT_495179 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 151/201 (75%), Gaps = 7/201 (3%)

Query: 23  RHHSCKFLSV------PTQSSSALALRVTTTTALGSDMLGDFGARDPFPAELESGFGEKV 76
           R  SC  L V       ++S+  L     T + L  D LGDFGARDP+P E+ S FG+KV
Sbjct: 20  RKPSCTILKVFGLLPPASRSNRKLGRLTVTRSNLAQDFLGDFGARDPYPEEIASQFGDKV 79

Query: 77  LGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEE-GGL 135
           LG   TEHKILIP  S LSL++  CSP SP Q P+SADDA+ LL KV+GW ++E+E GGL
Sbjct: 80  LGCQSTEHKILIPNASVLSLSQLQCSPVSPSQPPLSADDARTLLHKVLGWSIVEDEAGGL 139

Query: 136 KLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFI 195
           K++C+WK+RD +CGVELINRI KV EA+GH+P+LH+E P QVRAEL+T SIGGLSMNDFI
Sbjct: 140 KIRCMWKVRDSECGVELINRIQKVAEASGHYPSLHVESPTQVRAELFTPSIGGLSMNDFI 199

Query: 196 VAAKLDQIRTSDLAPRKRIWA 216
           +AAK+D I+TSDL+PRKR WA
Sbjct: 200 MAAKIDDIKTSDLSPRKRAWA 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2176182	220	AT5G51110 [Arabidopsis thalian	0.759	0.745	0.684	1e-59
TAIR|locus:2019297	187	AT1G29810 "AT1G29810" [Arabido	0.569	0.657	0.370	1.3e-20
DICTYBASE|DDB_G0278993	190	DDB_G0278993 [Dictyostelium di	0.541	0.615	0.272	1.2e-10
UNIPROTKB|Q9KLB9	109	VC_A0827 "Putative pterin-4-al	0.495	0.981	0.324	2.5e-10
TIGR_CMR|VC_A0827	109	VC_A0827 "pterin-4-alpha-carbi	0.495	0.981	0.324	2.5e-10
TIGR_CMR|CPS_3765	117	CPS_3765 "pterin-4-alpha-carbi	0.495	0.914	0.314	3.2e-10
TIGR_CMR|SO_1667	112	SO_1667 "pterin-4-alpha-carbin	0.490	0.946	0.261	1.8e-09

TAIR|locus:2176182 AT5G51110 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 113/165 (68%), Positives = 137/165 (83%)

Query:    53 DMLGDFGARDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMS 112
             D LGDFGARDP+P E+ S FG+KVLG   TEHKILIP  S LSL++  CSP S  Q P+S
Sbjct:    56 DFLGDFGARDPYPEEIASQFGDKVLGCQSTEHKILIPNASVLSLSQLQCSPVSSSQPPLS 115

Query:   113 ADDAKKLLKKVVGWRLLEEE-GGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHL 171
              DDA+ LL KV+GW +++ E GGLK++C+WK+RDF CGVELINRI+KV EA+GH+P+LHL
Sbjct:   116 GDDARTLLHKVLGWSIVDNEAGGLKIRCMWKVRDFGCGVELINRIHKVAEASGHYPSLHL 175

Query:   172 EQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216
             E P QVRAEL+TSSIGGLSMNDFI+AAK+D I+TSDL+PRKR WA
Sbjct:   176 ESPTQVRAELFTSSIGGLSMNDFIMAAKIDDIKTSDLSPRKRAWA 220

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=IEA

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

TAIR|locus:2019297 AT1G29810 "AT1G29810" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 46/124 (37%), Positives = 75/124 (60%)

Query:    92 SALSLAEQDCSPASPFQT-PMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGV 150
             S   L+ + C P +      M+   A+ LL+KV GW L  +   LKL   W+++ F  G+
Sbjct:    62 SLADLSTKKCVPCNAKDLRAMTEQSAQDLLQKVAGWDLANDNDTLKLHRSWRVKSFTKGL 121

Query:   151 ELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAP 210
             +   R+  + E+ GH P+LHL   N V+ E+WT +IGGL+ NDFI+AAK+++++  DL  
Sbjct:   122 DFFQRVADIAESEGHHPDLHLVGWNNVKIEIWTHAIGGLTENDFILAAKINELQVEDLLR 181

Query:   211 RKRI 214
             +K++
Sbjct:   182 KKKV 185

GO:0004160 "dihydroxy-acid dehydratase activity" evidence=ISS

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=IEA

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0278993 DDB_G0278993 [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query:    94 LSLAEQDCSPASPFQTPMSADDAKKLLKKV-VGWRLLEEEGGLKLQCLWKLRDFKCGVEL 152
             + L+++ C P      P+  +    LLK +   W+L ++    K+   WK+  F   VE 
Sbjct:    69 VDLSKKHCQPCEGGIPPLDFNSKISLLKNIDKDWKLSDDSK--KIFRNWKI-PFSKSVEY 125

Query:   153 INRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTSDLAPRK 212
             +N I K+ +  GH P++ +E     +  ++T  I  L+ ND+I+A+K+D +    + PR+
Sbjct:   126 LNDISKIADEEGHHPDISIESFWNFKITIYTHFINDLTENDYILASKIDNLNIKSIEPRR 185

Query:   213 R 213
             +
Sbjct:   186 K 186

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=IEA

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=IEA

UNIPROTKB|Q9KLB9 VC_A0827 "Putative pterin-4-alpha-carbinolamine dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/108 (32%), Positives = 58/108 (53%)

Query:    96 LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
             L E  C   S     +++++ ++LL ++ GW L+  +G  +L+  ++ ++FK      N+
Sbjct:     2 LDELRCEACSAGAIGLTSEEQQQLLSELDGWALIHRDGIAQLEKRYRFKNFKQAWAFSNQ 61

Query:   156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
             I ++ E   H P + LE  N V    W+ SI GL  NDFI AAK D +
Sbjct:    62 IAELAEQEFHNPAILLEWGN-VTVTWWSHSIKGLHKNDFICAAKCDAL 108

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=ISS

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=ISS

TIGR_CMR|VC_A0827 VC_A0827 "pterin-4-alpha-carbinolamine dehydratase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/108 (32%), Positives = 58/108 (53%)

Query:    96 LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
             L E  C   S     +++++ ++LL ++ GW L+  +G  +L+  ++ ++FK      N+
Sbjct:     2 LDELRCEACSAGAIGLTSEEQQQLLSELDGWALIHRDGIAQLEKRYRFKNFKQAWAFSNQ 61

Query:   156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
             I ++ E   H P + LE  N V    W+ SI GL  NDFI AAK D +
Sbjct:    62 IAELAEQEFHNPAILLEWGN-VTVTWWSHSIKGLHKNDFICAAKCDAL 108

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=ISS

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=ISS

TIGR_CMR|CPS_3765 CPS_3765 "pterin-4-alpha-carbinolamine dehydratase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 34/108 (31%), Positives = 56/108 (51%)

Query:    96 LAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINR 155
             LA Q C         +S ++ K+L+  +  W     +  + L+  +K +++K      N+
Sbjct:     9 LASQVCEACHVDAPKVSDEELKELIGLIPDWVPQVRDNVMMLEREYKFKNYKLAWAFANK 68

Query:   156 IYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
             + ++ E+  H P++ LE   +V    WT SIGGL  NDFI AAK DQ+
Sbjct:    69 VSELAESEFHHPSILLEW-GKVTVTWWTHSIGGLHKNDFICAAKTDQL 115

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=ISS

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=ISS

TIGR_CMR|SO_1667 SO_1667 "pterin-4-alpha-carbinolamine dehydratase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 28/107 (26%), Positives = 57/107 (53%)

Query:    95 SLAEQDCSPASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELIN 154
             +L +  C         ++ ++  +L++ +  W +   +G ++L+ ++K ++FK  +   N
Sbjct:     3 ALTQMKCEACQADAPKVTDEELAELIRMIPDWGVQVRDGIMQLERVYKFKNFKLAMAFTN 62

Query:   155 RIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLD 201
             ++ ++ E   H P + L +  +V    W+ SI GL  NDFI+AAK D
Sbjct:    63 KLAELAEEEFHHPGI-LTEWGKVTVTWWSHSIKGLHKNDFIMAAKTD 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      216       201   0.00089  111 3  11 22  0.47    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  173 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.19u 0.12s 18.31t   Elapsed:  00:00:01
  Total cpu time:  18.19u 0.12s 18.31t   Elapsed:  00:00:01
  Start:  Thu May  9 18:17:29 2013   End:  Thu May  9 18:17:30 2013

GO:0006729 "tetrahydrobiopterin biosynthetic process" evidence=ISS

GO:0008124 "4-alpha-hydroxytetrahydrobiopterin dehydratase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	LOW CONFIDENCE prediction!
4th Layer	4.2.1.96	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam01329	96	pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine	8e-29
cd00913	76	cd00913, PCD_DCoH_subfamily_a, PCD_DCoH: The bifun	7e-26
cd00488	75	cd00488, PCD_DCoH, PCD_DCoH: The bifunctional prot	6e-19
PRK00823	97	PRK00823, phhB, pterin-4-alpha-carbinolamine dehyd	2e-17
COG2154	101	COG2154, COG2154, Pterin-4a-carbinolamine dehydrat	1e-11
cd00914	76	cd00914, PCD_DCoH_subfamily_b, PCD_DCoH: The bifun	2e-04

>gnl|CDD|216436 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase

 Score =  103 bits (259), Expect = 8e-29
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 110 PMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNL 169
           P+S ++ ++LL ++ GW L     G  L   +K +DFK  +  +N + ++ EA GH P+L
Sbjct: 5   PLSEEEIEELLAELPGWSL---VDGDALTRTFKFKDFKEALAFVNAVAELAEAEGHHPDL 61

Query: 170 HLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
                N+V   L T  IGGL+ NDFI+AAK+D +
Sbjct: 62  TNV-YNRVTVTLTTHDIGGLTENDFILAAKIDAL 94

Pterin 4 alpha carbinolamine dehydratase is also known as DCoH (dimerisation cofactor of hepatocyte nuclear factor 1-alpha). Length = 96

>gnl|CDD|238455 cd00913, PCD_DCoH_subfamily_a, PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

 Score = 95.0 bits (237), Expect = 7e-26
 Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTS 184
           GW L   + GLKL+  ++ ++F   +E +N + ++ EA GH P+L L    +VR   WT 
Sbjct: 1   GWEL--ADDGLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGW-GRVRVTWWTH 57

Query: 185 SIGGLSMNDFIVAAKLDQI 203
           SIGGLS NDFI+AAK+D +
Sbjct: 58  SIGGLSENDFIMAAKIDAL 76

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Length = 76

>gnl|CDD|238272 cd00488, PCD_DCoH, PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

 Score = 77.2 bits (191), Expect = 6e-19
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTS 184
           GW L     G  L+  +K +DFK  +  +NR+ ++ EA  H P++     N+V   L T 
Sbjct: 1   GWEL---ADGDALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISNV-YNKVTVTLTTH 56

Query: 185 SIGGLSMNDFIVAAKLDQI 203
             GGL+ NDFI+AAK+D +
Sbjct: 57  DAGGLTENDFILAAKIDAL 75

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carcinomas and in malignant melanomas. Length = 75

>gnl|CDD|234845 PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 110 PMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNL 169
            +S ++  +LL ++ GW L        ++  +K ++F      +NR+ ++ E   H P+ 
Sbjct: 5   KLSDEEIAELLPQLPGWTL--VGDRDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDW 62

Query: 170 HLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
                N+V   L T   GGL+ NDFI+AAK+D +
Sbjct: 63  FNVY-NRVTVTLTTHDAGGLTENDFILAAKIDAL 95

Length = 97

>gnl|CDD|225065 COG2154, COG2154, Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 112 SADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHL 171
           + ++  +LL+ + GW L   + G KL   +K ++FK  +  +NR+ ++ E   H P++ +
Sbjct: 7   TDEELAELLRALPGWEL--ADDGAKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDIEV 64

Query: 172 EQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIR 204
              N+V   L T   GGL+  DF +AAK+D + 
Sbjct: 65  VY-NRVTVTLTTHDAGGLTDLDFKLAAKIDALA 96

Length = 101

>gnl|CDD|238456 cd00914, PCD_DCoH_subfamily_b, PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTS 184
           GW L   +G   +   +K +DF      + R+    E   H P       N+V   L T 
Sbjct: 1   GWTL--VDGRDAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWF-NVYNKVDITLTTH 57

Query: 185 SIGGLSMNDFIVAAKLDQI 203
             GGL+  D  +A  +++ 
Sbjct: 58  DAGGLTERDIKLAKFIEKA 76

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carcinomas and in malignant melanomas. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
COG2154	101	Pterin-4a-carbinolamine dehydratase [Coenzyme meta	99.98
PRK00823	97	phhB pterin-4-alpha-carbinolamine dehydratase; Val	99.97
PF01329	95	Pterin_4a: Pterin 4 alpha carbinolamine dehydratas	99.97
cd00914	76	PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional pr	99.94
cd00913	76	PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional pr	99.94
cd00488	75	PCD_DCoH PCD_DCoH: The bifunctional protein pterin	99.94
KOG4073	104	consensus Pterin carbinolamine dehydratase PCBD/di	99.92

>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]

Probab=99.98  E-value=5.6e-32  Score=210.45  Aligned_cols=98  Identities=30%  Similarity=0.596  Sum_probs=92.7

Q ss_pred             CCCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCC
Q 027937          107 FQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSI  186 (216)
Q Consensus       107 ~~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~  186 (216)
                      ..+.|+++++.++|.+++||.+.++  +..|+|+|+|+||.+|+.|||+||.+||+.||||||++ .|++|+|+||||++
T Consensus         2 ~~~~lt~~~~~~~l~~l~gW~l~~~--~~~l~r~f~FknF~~a~~F~~~vA~~Ae~~~HHPdi~~-~y~~V~vtltTHda   78 (101)
T COG2154           2 RASKLTDEELAELLRALPGWELADD--GAKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDIEV-VYNRVTVTLTTHDA   78 (101)
T ss_pred             CccccCHHHHHHHhcCCCCCEEecC--cceEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCeEE-EeeeEEEEEEEccC
Confidence            3578999999999999999999976  67999999999999999999999999999999999999 59999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcC
Q 027937          187 GGLSMNDFIVAAKLDQIRTSD  207 (216)
Q Consensus       187 gGLT~~Df~LAakID~l~~~d  207 (216)
                      ||||++||+||++||+++...
T Consensus        79 gglT~~D~~lA~~id~~~~~~   99 (101)
T COG2154          79 GGLTDLDFKLAAKIDALAKTE   99 (101)
T ss_pred             CCccHHHHHHHHHHHHHHhhh
Confidence            999999999999999998653

>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated

Probab=99.97  E-value=2.6e-31  Score=204.07  Aligned_cols=95  Identities=29%  Similarity=0.559  Sum_probs=90.2

Q ss_pred             CCCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCC
Q 027937          107 FQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSI  186 (216)
Q Consensus       107 ~~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~  186 (216)
                      ..++|+++|++++|..||||++.++  +.+|+|+|+|+||.++++|+|+|+.+||++||||+|++ +|++|+|+|+||++
T Consensus         2 ~~~~Ls~~ei~~~l~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~   78 (97)
T PRK00823          2 MAEKLSDEEIAELLPQLPGWTLVGD--RDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFN-VYNRVTVTLTTHDA   78 (97)
T ss_pred             CCCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEE-EcCEEEEEEEeCCC
Confidence            4578999999999999999999765  66899999999999999999999999999999999999 59999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 027937          187 GGLSMNDFIVAAKLDQIR  204 (216)
Q Consensus       187 gGLT~~Df~LAakID~l~  204 (216)
                      +|||++||+||++||+++
T Consensus        79 ~glT~~D~~lA~~id~~~   96 (97)
T PRK00823         79 GGLTENDFILAAKIDALA   96 (97)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999999986

>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []

Probab=99.97  E-value=4.4e-31  Score=201.97  Aligned_cols=94  Identities=34%  Similarity=0.643  Sum_probs=82.6

Q ss_pred             CCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCC
Q 027937          108 QTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIG  187 (216)
Q Consensus       108 ~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~g  187 (216)
                      +++||++||+++|..+|||++..   +..|+|+|+|+||.+|++|||+|+.+||+++|||+|++ .|++|+|+|+||++|
T Consensus         2 ~~~Ls~~ei~~~L~~l~~W~~~~---~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~   77 (95)
T PF01329_consen    2 APPLSEEEIAEALAELPGWKLDG---GGRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISL-GYNRVTVTLTTHDAG   77 (95)
T ss_dssp             -SB-THHHHHHHHHTSTTSEEET---SSEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEE-ETTEEEEEE-BTTTT
T ss_pred             CCCCCHHHHHHhhhcCcCCEECC---CCcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEe-cCCcEEEEEEeCCCC
Confidence            67999999999999999999986   14999999999999999999999999999999999999 599999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 027937          188 GLSMNDFIVAAKLDQIRT  205 (216)
Q Consensus       188 GLT~~Df~LAakID~l~~  205 (216)
                      |||++||+||++||+++.
T Consensus        78 glT~~D~~lA~~id~~~~   95 (95)
T PF01329_consen   78 GLTEKDFILAARIDDLAE   95 (95)
T ss_dssp             BBBHHHHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999999873

X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....

>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=99.94  E-value=3.4e-27  Score=174.02  Aligned_cols=76  Identities=25%  Similarity=0.423  Sum_probs=71.9

Q ss_pred             CCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937          125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI  203 (216)
Q Consensus       125 GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~LAakID~l  203 (216)
                      ||++..+  +..|+|+|+|++|.+|++|||+|+.+||++||||+|++ +|++|+|+|+||++||||++||+||++||++
T Consensus         1 gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~-~~~~V~v~l~Thd~~glT~~D~~lA~~id~~   76 (76)
T cd00914           1 GWTLVDG--RDAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFN-VYNKVDITLTTHDAGGLTERDIKLAKFIEKA   76 (76)
T ss_pred             CCeEeCC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEE-eccEEEEEEEeCCCCCcCHHHHHHHHHHhcC
Confidence            7999864  44899999999999999999999999999999999999 5999999999999999999999999999975

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon

>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=99.94  E-value=9.6e-27  Score=171.48  Aligned_cols=76  Identities=46%  Similarity=0.867  Sum_probs=72.0

Q ss_pred             CCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937          125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI  203 (216)
Q Consensus       125 GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~LAakID~l  203 (216)
                      ||++.++  +.+|+|+|+|++|.++++||++||.+||+++|||+|++ .|++|+|+|+||+++|||++||+||++||++
T Consensus         1 gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~glT~~D~~lA~~id~l   76 (76)
T cd00913           1 GWELADD--GLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSL-GWGRVRVTWWTHSIGGLSENDFIMAAKIDAL   76 (76)
T ss_pred             CCcCcCC--CCeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEE-eccEEEEEEEeCCCCCCCHHHHHHHHHHhcC
Confidence            7999765  55899999999999999999999999999999999999 5999999999999999999999999999975

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).

>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme

Probab=99.94  E-value=1.6e-26  Score=169.55  Aligned_cols=75  Identities=40%  Similarity=0.708  Sum_probs=71.0

Q ss_pred             CCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937          125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI  203 (216)
Q Consensus       125 GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~LAakID~l  203 (216)
                      ||++.+   +.+|+|+|+|++|.+|++||++|+.+||++||||+|++ .|++|+|+|+||+++|||++||+||++||++
T Consensus         1 gW~~~~---~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~glt~~D~~lA~~id~~   75 (75)
T cd00488           1 GWELAD---GDALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISN-VYNKVTVTLTTHDAGGLTENDFILAAKIDAL   75 (75)
T ss_pred             CCcCCC---CCcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEE-eeeEEEEEEEeCCCCCCCHHHHHHHHHHhcC
Confidence            799975   34899999999999999999999999999999999999 5999999999999999999999999999975

DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc

>KOG4073 consensus Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 [Transcription]

Probab=99.92  E-value=3.8e-25  Score=171.11  Aligned_cols=97  Identities=26%  Similarity=0.395  Sum_probs=82.9

Q ss_pred             CCCCCHHHHHHhccC--CCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCC
Q 027937          108 QTPMSADDAKKLLKK--VVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSS  185 (216)
Q Consensus       108 ~~~Lt~~ei~~lL~~--L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs  185 (216)
                      ...|+..|-...+..  ..||.+..+  ...|+|+|.|+||.+|+.||.+||..||++||||+|++ .||+|.|+|+||+
T Consensus         5 ~~~~~~~er~~~ll~~~~agW~l~~~--rd~i~kef~fKdF~~a~~FmtrVal~Ae~~~HHPew~n-vynkV~itL~THd   81 (104)
T KOG4073|consen    5 AHRLNESERKLKLLTLKAAGWDLVEG--RDAIFKEFRFKDFNQAFGFMTRVALRAEKLGHHPEWFN-VYNKVKITLSTHD   81 (104)
T ss_pred             hhhhhhhHHhccchhhhhcCCCcccC--ccceeeEEEeecHHHHHHHHHHHHHHHHHhcCCchhhe-eeeeeEEEEEecc
Confidence            344554443333333  359999876  45999999999999999999999999999999999999 5999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcC
Q 027937          186 IGGLSMNDFIVAAKLDQIRTSD  207 (216)
Q Consensus       186 ~gGLT~~Df~LAakID~l~~~d  207 (216)
                      +||||++||.||.+||.++.++
T Consensus        82 ~ggLse~Dv~lA~~Ie~~a~~~  103 (104)
T KOG4073|consen   82 IGGLSENDVKLAKFIESLAVEM  103 (104)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2ebb_A	101	Crystal Structure Of Pterin-4-Alpha-Carbinolamine D		2e-04

>pdb|2EBB|A Chain A, Crystal Structure Of Pterin-4-Alpha-Carbinolamine Dehydratase (Pterin Carbinolamine Dehydratase) From Geobacillus Kaustophilus Hta426 Length = 101

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 111 MSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLH 170
           ++ ++ + LL+K  GW+L +E   +K    ++ +D+  G+E + RI  ++E A H P + 
Sbjct: 3   LTEEEVQALLEKADGWKLADERWIVKK---YRFQDYLQGIEFVRRIAAISENANHHPFIS 59
Query: 171 LEQP-NQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           ++     V+   W +   GL+  DF +A + D++
Sbjct: 60  IDYKLITVKLSSWRAK--GLTKLDFDLAKQYDEV 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
2ebb_A	101	Pterin-4-alpha-carbinolamine dehydratase; coenzyme	2e-20
3jst_A	97	Putative pterin-4-alpha-carbinolamine dehydratase;	2e-18
3hxa_A	104	Pterin-4-alpha-carbinolamine dehydratase; alpha an	5e-17
2v6u_A	104	Pterin-4A-carbinolamine dehydratase; lyase, enzyme	4e-16
1usm_A	80	DCOH, hepatocyte nuclear factor 1-alpha; transcrip	1e-15
1ru0_A	105	DCOH-like protein dcohm; alpha and beta structure,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus} Length = 101

 Score = 81.5 bits (202), Expect = 2e-20
 Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 110 PMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNL 169
            ++ ++ + LL+K  GW+L +E     +   ++ +D+  G+E + RI  ++E A H P +
Sbjct: 2   RLTEEEVQALLEKADGWKLADER---WIVKKYRFQDYLQGIEFVRRIAAISENANHHPFI 58

Query: 170 HLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
            ++    +  +L +    GL+  DF +A + D++
Sbjct: 59  SIDY-KLITVKLSSWRAKGLTKLDFDLAKQYDEV 91

>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} Length = 97

 Score = 75.8 bits (187), Expect = 2e-18
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 109 TPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPN 168
             ++  +  + L+ + GW+    +G   +   +K +DF      + +     E   H P 
Sbjct: 4   NRLTESEMNEALRALDGWQK--VDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPE 61

Query: 169 LHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
                 N+V   L T S  G++  D  +A K++ I
Sbjct: 62  WFNAY-NRVDVTLATHSENGVTELDIKMARKMNAI 95

>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A Length = 104

 Score = 72.3 bits (178), Expect = 5e-17
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 109 TPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPN 168
             +SA++  +LL  +      E EG   +   +  +DF      ++R+    E   H P 
Sbjct: 6   HRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPE 65

Query: 169 LHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
                 N+V   L T    GLS  D  +A+ ++Q+
Sbjct: 66  WFNVY-NKVHITLSTHECAGLSERDINLASFIEQV 99

>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A* Length = 104

 Score = 70.4 bits (173), Expect = 4e-16
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 108 QTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFP 167
           +   ++    +L K V  W L   +G L ++  ++  DF      ++R+    +   H P
Sbjct: 6   RLAANSARLLQLHKTVPQWHL--TDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHP 63

Query: 168 NLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
           N +    N V  EL T    GL+  DF +A  +D  
Sbjct: 64  NWYNVY-NTVDVELSTHDAAGLTEKDFALAKFMDDA 98

>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1 Length = 105

 Score = 68.6 bits (168), Expect = 1e-15
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 110 PMSADDAKKLLK--KVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFP 167
            ++A++  +L+   K  GW  L E     +   +  ++F      ++R+    E   H P
Sbjct: 9   WLTAEERDQLIPGLKAAGWSELSERD--AIYKEFSFKNFNQAFGFMSRVALQAEKMNHHP 66

Query: 168 NLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
                  N+V+  L +   GGL+  D  +A  +++ 
Sbjct: 67  EWFNVY-NKVQITLTSHDCGGLTKRDVKLAQFIEKA 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 28/187 (14%), Positives = 59/187 (31%), Gaps = 53/187 (28%)

Query: 54  MLGDFG--------ARDPFPAELESGFGEKV----LGNVDTEHKILIPKLSALSLAEQDC 101
           +LG  G               +++     K+    L N ++   +L      L   + + 
Sbjct: 158 VLG-SGKTWVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 102 S--PASPFQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCL-----------WKLRDFKC 148
           +          +     +  L++++  +  E        CL           W   +  C
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-------CLLVLLNVQNAKAWNAFNLSC 266

Query: 149 GVELINRIYKVTEA--AGHFPNLHLEQPNQVRAELWTSSIGGLSMNDF--IVAAKLDQIR 204
            + L  R  +VT+   A    ++ L+  +             L+ ++   ++   LD  R
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSM-----------TLTPDEVKSLLLKYLD-CR 314

Query: 205 TSDLAPR 211
             DL PR
Sbjct: 315 PQDL-PR 320

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 56/191 (29%)

Query: 14  LVLR-LSDPR--RH--HSCKFLSVPTQSSSALALRVTTTTALGSDMLGDFGARDPFPAEL 68
           LVL  + + +       SCK L             +TT     +D L             
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL-------------LTTRFKQVTDFLSAATTTHISLDHH 294

Query: 69  ESGFGEKVLGNVDTEHKILIPK---LSALSLAEQDCSPASPFQTPMSADDAKKLLKKVVG 125
                         E K L+ K        L  +  +  +P +  + A+  +  L     
Sbjct: 295 SMTLTPD-------EVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDN 346

Query: 126 WRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGH---------FP-NLHLEQPN 175
           W+         + C  KL        +I     V E A +         FP + H+  P 
Sbjct: 347 WK--------HVNC-DKLT------TIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PT 389

Query: 176 QVRAELWTSSI 186
            + + +W   I
Sbjct: 390 ILLSLIWFDVI 400

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
3jst_A	97	Putative pterin-4-alpha-carbinolamine dehydratase;	100.0
1ru0_A	105	DCOH-like protein dcohm; alpha and beta structure,	100.0
3hxa_A	104	Pterin-4-alpha-carbinolamine dehydratase; alpha an	100.0
2v6u_A	104	Pterin-4A-carbinolamine dehydratase; lyase, enzyme	99.98
2ebb_A	101	Pterin-4-alpha-carbinolamine dehydratase; coenzyme	99.98
1usm_A	80	DCOH, hepatocyte nuclear factor 1-alpha; transcrip	99.96

>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0

Probab=100.00  E-value=6.4e-33  Score=212.41  Aligned_cols=94  Identities=20%  Similarity=0.351  Sum_probs=89.8

Q ss_pred             CCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCC
Q 027937          108 QTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIG  187 (216)
Q Consensus       108 ~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~g  187 (216)
                      .++||++|++++|..||||++.++  +..|+|+|+|+||.+|++|||+||.+||+++|||+|++ +||+|+|+|+||++|
T Consensus         3 ~~~Ls~~ei~~~L~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~g   79 (97)
T 3jst_A            3 RNRLTESEMNEALRALDGWQKVDG--REAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFN-AYNRVDVTLATHSEN   79 (97)
T ss_dssp             CSCCCHHHHHHHHHTSTTCEECTT--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBGGGT
T ss_pred             CCCCCHHHHHHHhhcCCCCeEeCC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEE-eCCEEEEEEEeCCCC
Confidence            578999999999999999999854  56899999999999999999999999999999999999 599999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 027937          188 GLSMNDFIVAAKLDQIR  204 (216)
Q Consensus       188 GLT~~Df~LAakID~l~  204 (216)
                      |||++||+||++||+++
T Consensus        80 GlT~~D~~lA~~id~la   96 (97)
T 3jst_A           80 GVTELDIKMARKMNAIA   96 (97)
T ss_dssp             BCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999999986

>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1

Probab=100.00  E-value=5.4e-33  Score=215.65  Aligned_cols=100  Identities=20%  Similarity=0.332  Sum_probs=91.3

Q ss_pred             CCCCCCCCCCHHHHHHhccCC--CCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEE
Q 027937          103 PASPFQTPMSADDAKKLLKKV--VGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAE  180 (216)
Q Consensus       103 p~~~~~~~Lt~~ei~~lL~~L--~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~  180 (216)
                      .|+++.++|+++|++++|.+|  +||++.++  +.+|+|+|+|+||.+|++|||+||.+||+++|||+|++ +||+|+|+
T Consensus         2 ~~~~~~~~Ls~~ei~~~L~~l~~~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~   78 (105)
T 1ru0_A            2 SMSSDAQWLTAEERDQLIPGLKAAGWSELSE--RDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFN-VYNKVQIT   78 (105)
T ss_dssp             ----CCSBCCHHHHHHHHHHHHHTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCCCeEECC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEE
Confidence            356788999999999999998  89999765  45899999999999999999999999999999999999 59999999


Q ss_pred             EEcCCCCCCCHHHHHHHHHHHHHhh
Q 027937          181 LWTSSIGGLSMNDFIVAAKLDQIRT  205 (216)
Q Consensus       181 LtTHs~gGLT~~Df~LAakID~l~~  205 (216)
                      |+||++||||++||+||++||+++.
T Consensus        79 l~THd~gGlt~~D~~lA~~id~l~~  103 (105)
T 1ru0_A           79 LTSHDCGGLTKRDVKLAQFIEKAAA  103 (105)
T ss_dssp             ECBTTTTBCBHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999984

>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A

Probab=100.00  E-value=9e-33  Score=214.21  Aligned_cols=98  Identities=27%  Similarity=0.382  Sum_probs=91.0

Q ss_pred             CCCCCCCHHHHHHhccCC--CCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEc
Q 027937          106 PFQTPMSADDAKKLLKKV--VGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWT  183 (216)
Q Consensus       106 ~~~~~Lt~~ei~~lL~~L--~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtT  183 (216)
                      ++.++||++|++++|.+|  +||++.++  +.+|+|+|+|+||.+|++|||+||.+||+++|||+|++ +||+|+|+|+|
T Consensus         3 ~~~~~Ls~~ei~~~L~~L~~~gW~~~~~--~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~-~y~~V~v~l~T   79 (104)
T 3hxa_A            3 GKAHRLSAEERDQLLPNLRAVGWNELEG--RDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFN-VYNKVHITLST   79 (104)
T ss_dssp             --CCCCCHHHHHHHSHHHHTTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECB
T ss_pred             CCCccCCHHHHHHHHhhCCCCCCEEecC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEE-eCCEEEEEEEe
Confidence            578999999999999998  89999754  45899999999999999999999999999999999999 59999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhc
Q 027937          184 SSIGGLSMNDFIVAAKLDQIRTS  206 (216)
Q Consensus       184 Hs~gGLT~~Df~LAakID~l~~~  206 (216)
                      |++||||++||+||++||+++.+
T Consensus        80 Hd~gGlT~~D~~lA~~id~la~~  102 (104)
T 3hxa_A           80 HECAGLSERDINLASFIEQVAVS  102 (104)
T ss_dssp             TTTTBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999864

>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*

Probab=99.98  E-value=1.7e-32  Score=212.47  Aligned_cols=97  Identities=24%  Similarity=0.347  Sum_probs=91.4

Q ss_pred             CCCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCC
Q 027937          107 FQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSI  186 (216)
Q Consensus       107 ~~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~  186 (216)
                      .+++|+++|++++|..|+||++.++  +.+|+|+|+|+||.+|++|||+||.+||++||||+|++ +||+|+|+|+||++
T Consensus         5 ~~~~Ls~~ei~~~L~~l~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~   81 (104)
T 2v6u_A            5 ARLAANSARLLQLHKTVPQWHLTDG--HLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYN-VYNTVDVELSTHDA   81 (104)
T ss_dssp             CCCCTTCHHHHHHHTTSTTSEECGG--GCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBGGG
T ss_pred             cCCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCC
Confidence            4578999999999999999999865  56899999999999999999999999999999999999 59999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhc
Q 027937          187 GGLSMNDFIVAAKLDQIRTS  206 (216)
Q Consensus       187 gGLT~~Df~LAakID~l~~~  206 (216)
                      ||||++||+||++||+++..
T Consensus        82 gGlT~~D~~lA~~id~l~~~  101 (104)
T 2v6u_A           82 AGLTEKDFALAKFMDDAAKN  101 (104)
T ss_dssp             TBCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999853

>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}

Probab=99.98  E-value=4.4e-32  Score=209.38  Aligned_cols=94  Identities=24%  Similarity=0.489  Sum_probs=89.1

Q ss_pred             CCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCC
Q 027937          109 TPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGG  188 (216)
Q Consensus       109 ~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gG  188 (216)
                      .+|+++|++++|..||||++.++  + .|+|+|+|+||.+|++|||+||.+||++||||+|++ +||+|+|+|+||++||
T Consensus         1 ~~Ls~~ei~~~L~~l~gW~~~~~--~-~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~gG   76 (101)
T 2ebb_A            1 MRLTEEEVQALLEKADGWKLADE--R-WIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISI-DYKLITVKLSSWRAKG   76 (101)
T ss_dssp             CCCCHHHHHHHHHTSTTCEEETT--T-EEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEE-ETTEEEEEECBTTTTB
T ss_pred             CCCCHHHHHHHhhcCCCCeECCC--C-CEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCCCC
Confidence            36999999999999999999865  3 699999999999999999999999999999999999 5999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q 027937          189 LSMNDFIVAAKLDQIRTS  206 (216)
Q Consensus       189 LT~~Df~LAakID~l~~~  206 (216)
                      ||++||+||++||+++.+
T Consensus        77 lt~~D~~lA~~id~l~~~   94 (101)
T 2ebb_A           77 LTKLDFDLAKQYDEVYNQ   94 (101)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1ru0a_	100	d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus	3e-19
d1dcpa_	99	d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase	1e-18
d1usma_	80	d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase	1e-17

>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: DcoH-like protein DCoH2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.8 bits (189), Expect = 3e-19
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 110 PMSADDAKKLLK--KVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFP 167
            ++A++  +L+   K  GW  L E     +   +  ++F      ++R+    E   H P
Sbjct: 4   WLTAEERDQLIPGLKAAGWSELSE--RDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHP 61

Query: 168 NLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
                  N+V+  L +   GGL+  D  +A  +++ 
Sbjct: 62  EWFNVY-NKVQITLTSHDCGGLTKRDVKLAQFIEKA 96

>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.3 bits (185), Expect = 1e-18
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 111 MSADDAKKLLK--KVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPN 168
           +SA++  +LL   + VGW     EG   +   +  +DF      + R+    E   H P 
Sbjct: 3   LSAEERDQLLPNLRAVGWNE--LEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPE 60

Query: 169 LHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTS 206
                   V   L T    GLS  D  +A+ ++Q+  S
Sbjct: 61  WFNVYNK-VHITLSTHECAGLSERDINLASFIEQVAVS 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1ru0a_	100	DcoH-like protein DCoH2 {Mouse (Mus musculus) [Tax	99.97
d1dcpa_	99	Pterin-4a-carbinolamine dehydratase (PCD)/dimeriza	99.97
d1usma_	80	Pterin-4a-carbinolamine dehydratase (PCD)/dimeriza	99.94

>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: DcoH-like protein DCoH2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.7e-31  Score=200.46  Aligned_cols=97  Identities=21%  Similarity=0.341  Sum_probs=90.7

Q ss_pred             CCCCCCHHHHHHhccCC--CCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcC
Q 027937          107 FQTPMSADDAKKLLKKV--VGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTS  184 (216)
Q Consensus       107 ~~~~Lt~~ei~~lL~~L--~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTH  184 (216)
                      ++++||++|++++|+.+  +||++..+  +.+|+|+|+|+||.++++|||+|+.+||++||||+|++. |++|+|+|+||
T Consensus         1 da~~Lt~~ei~~~L~~L~~~gW~~~~~--~~~L~r~f~f~~f~~a~~F~~~va~~ae~~~HHPdi~~~-y~~V~v~l~Th   77 (100)
T d1ru0a_           1 DAQWLTAEERDQLIPGLKAAGWSELSE--RDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNV-YNKVQITLTSH   77 (100)
T ss_dssp             CCSBCCHHHHHHHHHHHHHTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE-TTEEEEEECBT
T ss_pred             CcccCCHHHHHHHHhhCCCCCCEEECC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEe-ccEEEEEEEeC
Confidence            36789999999999886  79999765  568999999999999999999999999999999999995 99999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhhc
Q 027937          185 SIGGLSMNDFIVAAKLDQIRTS  206 (216)
Q Consensus       185 s~gGLT~~Df~LAakID~l~~~  206 (216)
                      ++||||++||+||++||+++.+
T Consensus        78 d~~glT~~D~~lA~~Id~~~~~   99 (100)
T d1ru0a_          78 DCGGLTKRDVKLAQFIEKAAAS   99 (100)
T ss_dssp             TTTBCBHHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999864

>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PCD-like
family: PCD-like
domain: Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=8.2e-31  Score=199.23  Aligned_cols=94  Identities=27%  Similarity=0.396  Sum_probs=89.1

Q ss_pred             CCCHHHHHHhccCCC--CCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCC
Q 027937          110 PMSADDAKKLLKKVV--GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIG  187 (216)
Q Consensus       110 ~Lt~~ei~~lL~~L~--GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~g  187 (216)
                      +||++|++++|++|+  ||++.++  +.+|+|+|+|+||.++++|||+|+.+||++||||+|++ .|++|+|+|+||++|
T Consensus         2 ~Ls~ee~~~~l~~L~~~GW~~~~~--~~~L~r~f~F~~f~~a~~Fv~~Va~~ae~~~HHP~i~~-~y~~V~i~l~Thd~~   78 (99)
T d1dcpa_           2 RLSAEERDQLLPNLRAVGWNELEG--RDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFN-VYNKVHITLSTHECA   78 (99)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEECTT--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBTTTT
T ss_pred             CCCHHHHHHHHHhCCCCCCEEEcC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCccEEE-eeeEEEEEEEeCCCC
Confidence            799999999999986  9999765  56899999999999999999999999999999999999 599999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhc
Q 027937          188 GLSMNDFIVAAKLDQIRTS  206 (216)
Q Consensus       188 GLT~~Df~LAakID~l~~~  206 (216)
                      |||++||+||++||+|+.+
T Consensus        79 glT~~D~~lA~~id~la~~   97 (99)
T d1dcpa_          79 GLSERDINLASFIEQVAVS   97 (99)
T ss_dssp             BCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999865