Citrus Sinensis ID: 027938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Secondary Structure (PSIPRED)
cEEEEEEEEcHHHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MIYNVVLFFSSTVQQQYFQKygrdqmipvaanDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFrrkstdgfsiGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISsklskdggvepllkssdhpesenv
Flexible Loop (DISEMBL)
MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISsklskdggvepllkssdhpesenv
Low Complexity Region (SEG)
MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTllslvsvvfdllfICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Disordered region (IsUnstruct)
*IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVI*************************
Disordered Region (DISOPRED)
MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY********************************
Disordered Region (DISEMBL)
MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPL************
Disordered Region (DISPRO)
MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAK*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
P57758	270	Cystinosin homolog OS=Ara	yes	no	0.967	0.774	0.666	5e-79
Q54WT7	284	Cystinosin homolog OS=Dic	yes	no	0.861	0.654	0.433	3e-40
A7MB63	367	Cystinosin OS=Bos taurus	yes	no	0.865	0.509	0.391	1e-34
Q9VCR7	397	Cystinosin homolog OS=Dro	yes	no	0.967	0.526	0.386	4e-34
O60931	367	Cystinosin OS=Homo sapien	yes	no	0.865	0.509	0.407	7e-34
P57757	367	Cystinosin OS=Mus musculu	yes	no	0.865	0.509	0.402	1e-32
Q09500	404	Cystinosin homolog OS=Cae	yes	no	0.856	0.457	0.402	1e-29
A8WN56	403	Cystinosin homolog OS=Cae	N/A	no	0.986	0.528	0.347	7e-29
P17261	260	Cystine transporter OS=Sa	yes	no	0.439	0.365	0.408	3e-09

>sp|P57758|CTNS_ARATH Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1

 Score =  293 bits (750), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 140/210 (66%), Positives = 169/210 (80%), Gaps = 1/210 (0%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           MIYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QK
Sbjct: 60  MIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKS
Sbjct: 120 VSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+S+ FD+LF+ QH
Sbjct: 180 TVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQH 239

Query: 181 YVLYPAKKAVISSKLSKDGGVEPLLKSSDH 210
           YVLYP KK   S +  ++   EPL+ SS  
Sbjct: 240 YVLYPEKKVSKSPETGEESN-EPLIDSSHE 268

Thought to transport cystine out of lysosomes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54WT7|CTNS_DICDI Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 125/189 (66%), Gaps = 3/189 (1%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           ++N VL+F   V+ +Y+ KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK 
Sbjct: 56  VFNSVLYFDKLVKNEYYDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKN 113

Query: 62  SKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KS
Sbjct: 114 SKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKS 173

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T G+S+ N+LLDF GG  +  QM +   D  +W  F G+  K  LSL S+ FD+LFI QH
Sbjct: 174 TSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQH 233

Query: 181 YVLYPAKKA 189
           Y+LY   K+
Sbjct: 234 YILYRNPKS 242

Thought to transport cystine out of lysosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|A7MB63|CTNS_BOVIN Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 123/189 (65%), Gaps = 2/189 (1%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           ++N+ LF+  ++++Q+  KY  + + PV +NDV FS+HAV LT++ + Q  +YERG Q+V
Sbjct: 175 VFNIGLFWVPSIKEQFLLKY-PNGVNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRV 233

Query: 62  SKISMAIVSVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           S ++++ + + WL   +   +A +   +WL  +  F+ I++ +TL+KY PQA MNF  KS
Sbjct: 234 SWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKS 293

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K  L + S++FD++F  QH
Sbjct: 294 TEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQH 353

Query: 181 YVLYPAKKA 189
           + LY  K  
Sbjct: 354 FCLYRKKPG 362

Thought to transport cystine out of lysosomes.

Bos taurus (taxid: 9913)

>sp|Q9VCR7|CTNS_DROME Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 125/215 (58%), Gaps = 6/215 (2%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           ++N  L+F   +Q +Y  +Y    + PV  NDV FS+HA+  T IT+ Q   Y+R  Q+V
Sbjct: 180 MFNCGLYFIEDLQNEYEVRYPLG-VNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRV 238

Query: 62  SKISMAIVSVVWLAAAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRR 118
           S I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RR
Sbjct: 239 SFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRR 296

Query: 119 KSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFIC 178
           KST G+SIGNILLDF GG  +  QMI+ + + + WV+ +G+  K  L L SV+FD+ F+ 
Sbjct: 297 KSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFML 356

Query: 179 QHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPES 213
           QHYV Y   +   SS L+    V+     S  P  
Sbjct: 357 QHYVFYRHSRESSSSDLTTVTDVQNRTNESPPPSE 391

Thought to transport cystine out of lysosomes.

Drosophila melanogaster (taxid: 7227)

>sp|O60931|CTNS_HUMAN Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 120/189 (63%), Gaps = 2/189 (1%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           ++N+ L +   +++Q+  KY  + + PV +NDV FS+HAV+LT+I + Q  +YERG Q+V
Sbjct: 175 VFNIGLLWVPYIKEQFLLKY-PNGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRV 233

Query: 62  SKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           S  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KS
Sbjct: 234 SWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKS 293

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K  L + S+VFD++F  QH
Sbjct: 294 TEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQH 353

Query: 181 YVLYPAKKA 189
           + LY  +  
Sbjct: 354 FCLYRKRPG 362

Thought to transport cystine out of lysosomes.

Homo sapiens (taxid: 9606)

>sp|P57757|CTNS_MOUSE Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 2/189 (1%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           ++N+ L +   +Q+++  KY  + + PV +ND  FS+HAV LT+I + Q  +YERG Q+V
Sbjct: 175 VFNIGLLWVPYIQEEFLLKY-PNGVNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRV 233

Query: 62  SKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           S  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KS
Sbjct: 234 SWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKS 293

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T G+SIG +LLDF GG  +  QM +QS + + W   +G+  K  L + ++ FD++F  QH
Sbjct: 294 TKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQH 353

Query: 181 YVLYPAKKA 189
           + LY  K  
Sbjct: 354 FYLYRKKPG 362

Thought to transport cystine out of lysosomes.

Mus musculus (taxid: 10090)

>sp|Q09500|CTNS_CAEEL Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=3 SV=2

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 4/189 (2%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           I+N++++++S V+ +Y     R    PV  NDV F++HA L   IT+ Q   YER  Q V
Sbjct: 177 IFNLLMYYNSHVKNEYNIVNPRSPP-PVLLNDVVFAVHAFLACFITILQCLFYERDNQSV 235

Query: 62  SKISMAIVSVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 119
           S   +A++ +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RK
Sbjct: 236 SSKCIALM-IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRK 294

Query: 120 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQ 179
           ST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY N  K  L  VS+ FD++F+ Q
Sbjct: 295 STVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQ 354

Query: 180 HYVLYPAKK 188
           HYVLYP  +
Sbjct: 355 HYVLYPNAE 363

Thought to transport cystine out of lysosomes (By similarity). May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WN56|CTNS_CAEBR Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1

 Score =  127 bits (318), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 122/216 (56%), Gaps = 3/216 (1%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           ++N++++++S V+  Y  +  R    PV  NDV F++HA L   +T+ Q   YER  Q++
Sbjct: 176 MFNLLMYYNSHVKNIYSMENPRSPP-PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRI 234

Query: 62  S-KISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           S K  + I+ +V           L   + L  +   + I++ +T  KY PQA  N++RKS
Sbjct: 235 STKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKS 294

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T G+SIGNILLDF GG  +  QM++Q+I+ N W  FY N  K  L  VS+ FD++F+ QH
Sbjct: 295 TVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQH 354

Query: 181 YVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 215
           Y LYP  +   +     D    + +++ ++H  ++N
Sbjct: 355 YALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390

Thought to transport cystine out of lysosomes. May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|P17261|ERS1_YEAST Cystine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERS1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 99  IQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ-SIDQN-SWVNF 156
           +++ M+LIKYIPQ   N  RKS D F I  + LD  GG  +  Q+I Q S DQ  S   F
Sbjct: 161 LKISMSLIKYIPQVTHNSTRKSMDCFPIQGVFLDVTGGIASLLQLIWQLSNDQGFSLDTF 220

Query: 157 YGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSK 194
             N GK  LS+V+++F+ +FI Q +V Y ++   ++S+
Sbjct: 221 VTNFGKVGLSMVTLIFNFIFIMQWFV-YRSRGHDLASE 257

Transport cystine out of vacuoles/endodomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
224141271	274	predicted protein [Populus trichocarpa]	0.990	0.781	0.746	3e-88
449450036	274	PREDICTED: cystinosin homolog [Cucumis s	0.995	0.784	0.717	4e-86
356558785	277	PREDICTED: cystinosin homolog [Glycine m	0.986	0.768	0.714	1e-84
388517027	277	unknown [Medicago truncatula]	1.0	0.779	0.711	4e-84
225452224	274	PREDICTED: cystinosin homolog [Vitis vin	0.995	0.784	0.703	1e-82
359488646	255	PREDICTED: cystinosin homolog [Vitis vin	0.875	0.741	0.777	3e-82
388506624	277	unknown [Lotus japonicus]	1.0	0.779	0.683	4e-82
255571996	244	cystinosin, putative [Ricinus communis]	0.898	0.795	0.739	3e-78
21553944	270	unknown [Arabidopsis thaliana]	0.967	0.774	0.671	3e-78
297805606	270	PQ-loop repeat family protein [Arabidops	0.967	0.774	0.676	5e-78

>gi|224141271|ref|XP_002323998.1| predicted protein [Populus trichocarpa] gi|118485298|gb|ABK94508.1| unknown [Populus trichocarpa] gi|222867000|gb|EEF04131.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 162/217 (74%), Positives = 186/217 (85%), Gaps = 3/217 (1%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           +IYN  L+FSS +Q QYF+KYG  +MIPVAANDVAFS+HAVLLT ITLFQI IY+RG QK
Sbjct: 60  LIYNASLYFSSAIQHQYFEKYGHGEMIPVAANDVAFSIHAVLLTAITLFQIVIYDRGNQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VSKIS+A V VVWL AAVCFF+ALP+HSWLWLI+ FN+IQV MT+IKYIPQ IMNF RKS
Sbjct: 120 VSKISIATVCVVWLVAAVCFFIALPSHSWLWLISIFNSIQVFMTVIKYIPQVIMNFMRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           TDGFSIGNILLD LGG TNY+QM VQSIDQNSWVNFYGNIGKTLLSLVS+ FDL+F+CQH
Sbjct: 180 TDGFSIGNILLDCLGGVTNYAQMAVQSIDQNSWVNFYGNIGKTLLSLVSIFFDLVFMCQH 239

Query: 181 YVLYPAKKAVISSKLSKDGGVEPLLKSSDHPES-ENV 216
           Y+LYP  KAV   KL+K+ G EPL++ S+ P + ENV
Sbjct: 240 YILYPENKAV-PPKLNKE-GTEPLIRFSEEPAAPENV 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450036|ref|XP_004142770.1| PREDICTED: cystinosin homolog [Cucumis sativus] gi|449483821|ref|XP_004156702.1| PREDICTED: cystinosin homolog [Cucumis sativus]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/216 (71%), Positives = 180/216 (83%), Gaps = 1/216 (0%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           +IYN  L+FSS VQ+QYF KYG DQMIPVAA+DVAFS+HAVLLT ITLFQ+ IY+RG Q 
Sbjct: 60  LIYNASLYFSSAVQKQYFDKYGYDQMIPVAASDVAFSIHAVLLTAITLFQVVIYDRGTQI 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VSKIS+ IV VVW+ AA+CFF+ L +HSWLWLI+ FN+IQV MT IKYIPQAIMNF RKS
Sbjct: 120 VSKISLTIVIVVWIFAAICFFIGLSSHSWLWLISIFNSIQVFMTAIKYIPQAIMNFLRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           TDGFSIGNILLDFLGG  NY+QM VQSIDQNSWVNFYGNIGKTLLSL+S+ FDLLF+ QH
Sbjct: 180 TDGFSIGNILLDFLGGLANYAQMAVQSIDQNSWVNFYGNIGKTLLSLISIFFDLLFMLQH 239

Query: 181 YVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV 216
           YVLYP K+ ++S K + D   E L+   D P+SE+V
Sbjct: 240 YVLYPGKRPIVSQK-ADDKTREALIAPPDRPQSEDV 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558785|ref|XP_003547683.1| PREDICTED: cystinosin homolog [Glycine max]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 158/221 (71%), Positives = 180/221 (81%), Gaps = 8/221 (3%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           +IYN  L+FSS +Q+QYF+KYG  +MIPVAANDVAFS+HAVLLT ITLFQIAIYERG QK
Sbjct: 60  LIYNASLYFSSAIQKQYFEKYGYGEMIPVAANDVAFSIHAVLLTAITLFQIAIYERGSQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VSK+S+ IVSV WL AAVCFF+ALPN+SWLWL++ FN IQV+MT IKYIPQA+MNF RKS
Sbjct: 120 VSKVSIGIVSVAWLVAAVCFFIALPNNSWLWLLSVFNTIQVVMTTIKYIPQAVMNFLRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           TDGFSIGNILLDF GG  NY QM+VQSIDQ+SWVNFYGNIGK LLSLVSV FD++FI QH
Sbjct: 180 TDGFSIGNILLDFSGGIANYGQMVVQSIDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQH 239

Query: 181 YVLYPAKKAVISSKLS-----KDGGVEPLLKSSDHPESENV 216
           YVLY  KK   SSKL      +D   E L++ SD    ENV
Sbjct: 240 YVLYRGKK---SSKLEITTEQEDQIREHLVRHSDQSSPENV 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517027|gb|AFK46575.1| unknown [Medicago truncatula]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 155/218 (71%), Positives = 179/218 (82%), Gaps = 2/218 (0%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           +IYN  L+FSS +Q+QYFQKYG DQMIPVA NDVAFS+HAVLLT I LFQIAIYERG QK
Sbjct: 60  LIYNSSLYFSSAIQKQYFQKYGYDQMIPVAKNDVAFSIHAVLLTAIALFQIAIYERGSQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           +SKI + IVS+VWL AAVCFFVAL NHSWLWL+N FN+IQV+MT IKYIPQ  MNF RKS
Sbjct: 120 LSKICIGIVSIVWLTAAVCFFVALSNHSWLWLLNVFNSIQVLMTTIKYIPQVSMNFLRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           TDG+SIGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLVSV FD++FI QH
Sbjct: 180 TDGWSIGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQH 239

Query: 181 YVLYPAKKA--VISSKLSKDGGVEPLLKSSDHPESENV 216
           YVLYP KK+  ++++   +D   E L + SD   SENV
Sbjct: 240 YVLYPDKKSSKLVTTTEDEDQIREHLNRPSDESPSENV 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452224|ref|XP_002268329.1| PREDICTED: cystinosin homolog [Vitis vinifera] gi|296081321|emb|CBI17703.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/216 (70%), Positives = 172/216 (79%), Gaps = 1/216 (0%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           +IYN VL+FS  VQ+QY +KYG +QMIPVAANDVAFS+HAV+L   T FQIAIYERG QK
Sbjct: 60  LIYNAVLYFSPAVQRQYREKYGVEQMIPVAANDVAFSIHAVVLIAFTWFQIAIYERGTQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VSKIS+ IVS  WL+AAVC  +A P+HSWLWLI+ FN IQV +  IKYIPQA MNFRRKS
Sbjct: 120 VSKISIGIVSAAWLSAAVCVIIAWPSHSWLWLISVFNTIQVALATIKYIPQAFMNFRRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           TDGFSIGNIL D  GG  NY+QM VQSI+Q SWVNFYGNIGK L+SLVSV FDL+FI QH
Sbjct: 180 TDGFSIGNILFDLSGGVANYAQMTVQSINQGSWVNFYGNIGKLLISLVSVFFDLVFISQH 239

Query: 181 YVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV 216
           Y+LYP KK     KL  D   EPL+KS DHP+SENV
Sbjct: 240 YLLYPGKKVGKCPKLG-DESREPLIKSVDHPQSENV 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488646|ref|XP_002268255.2| PREDICTED: cystinosin homolog [Vitis vinifera] gi|296081320|emb|CBI17702.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 147/189 (77%), Positives = 164/189 (86%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           +IYN VL+FSS VQ+QY +KYG  QMIPVAANDVAFS+HAV+LT  TLFQIAIYERG QK
Sbjct: 60  LIYNAVLYFSSAVQRQYREKYGIGQMIPVAANDVAFSIHAVILTAFTLFQIAIYERGTQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VSKIS+ IV   WL+AAVC  +ALPNHSWLWLI+ FN IQV+MT+IKY+PQA MNFRRKS
Sbjct: 120 VSKISIGIVCAAWLSAAVCVIIALPNHSWLWLISVFNTIQVVMTVIKYVPQAFMNFRRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           TDGFSIGNILLD  GG  NY+QM VQSIDQ+SWVNFYGNIGK LLSLVSV FDL+FICQH
Sbjct: 180 TDGFSIGNILLDLCGGVANYAQMTVQSIDQDSWVNFYGNIGKLLLSLVSVFFDLIFICQH 239

Query: 181 YVLYPAKKA 189
           Y+LYP KKA
Sbjct: 240 YLLYPGKKA 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506624|gb|AFK41378.1| unknown [Lotus japonicus]

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 149/218 (68%), Positives = 179/218 (82%), Gaps = 2/218 (0%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           +I+N  L+FSS +Q+QYF KYG  +MIPVAANDVAFS+HAVLLT ITLFQI IYERG QK
Sbjct: 60  LIFNASLYFSSAIQKQYFDKYGYQEMIPVAANDVAFSIHAVLLTAITLFQIVIYERGSQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VSKIS+ IV V WL AA+CFF+AL +HSWLWL++ FN+IQV MT++KYIPQ IMNF RKS
Sbjct: 120 VSKISIGIVFVAWLTAAICFFIALSDHSWLWLLSIFNSIQVAMTIVKYIPQVIMNFLRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           TDGFSIGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLVSV FD++FI QH
Sbjct: 180 TDGFSIGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQH 239

Query: 181 YVLYPAKKA--VISSKLSKDGGVEPLLKSSDHPESENV 216
           YVLYPAK++  ++++   +D   E L++ SD    ENV
Sbjct: 240 YVLYPAKRSSKLVTTTDDEDQIREHLVRPSDVSPPENV 277

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571996|ref|XP_002526939.1| cystinosin, putative [Ricinus communis] gi|223533691|gb|EEF35426.1| cystinosin, putative [Ricinus communis]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/196 (73%), Positives = 163/196 (83%), Gaps = 2/196 (1%)

Query: 10  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 69
           SS +Q+QY  KYG  QMIPVA NDVAFS+HAVLLT ITLFQIAIYERG QKVSKI++AIV
Sbjct: 41  SSAIQKQYLDKYGHKQMIPVAVNDVAFSIHAVLLTAITLFQIAIYERGRQKVSKIAIAIV 100

Query: 70  SVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNI 129
            +VW+AAA C FVAL +HSWLWLI+ F++IQV  T IKYIPQAIMNF RKSTDGFSIGNI
Sbjct: 101 CIVWVAAAACLFVALHHHSWLWLISVFSSIQVCTTGIKYIPQAIMNFMRKSTDGFSIGNI 160

Query: 130 LLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKA 189
           LLDFLGG TNY+QM  QSIDQ+SWVNFYGNIGKTLLSLVS+ FDLLF+ QHY+LYPAKK 
Sbjct: 161 LLDFLGGVTNYAQMAAQSIDQHSWVNFYGNIGKTLLSLVSIFFDLLFMFQHYILYPAKKK 220

Query: 190 V--ISSKLSKDGGVEP 203
               S +  +D   EP
Sbjct: 221 KENASPETERDSAAEP 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553944|gb|AAM63025.1| unknown [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 171/210 (81%), Gaps = 1/210 (0%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           MIYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS++AV++T +TLFQI IYERG QK
Sbjct: 60  MIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSINAVVMTAVTLFQIFIYERGPQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKS
Sbjct: 120 VSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+S+ FD+LF+CQH
Sbjct: 180 TVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMCQH 239

Query: 181 YVLYPAKKAVISSKLSKDGGVEPLLKSSDH 210
           YVLYP KK   S + S++   EPL+ SS  
Sbjct: 240 YVLYPEKKVSKSPETSEESN-EPLIDSSHE 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805606|ref|XP_002870687.1| PQ-loop repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297316523|gb|EFH46946.1| PQ-loop repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 142/210 (67%), Positives = 170/210 (80%), Gaps = 1/210 (0%)

Query: 1   MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
           MIYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QK
Sbjct: 60  MIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTALTLFQIFIYERGPQK 119

Query: 61  VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           VS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKS
Sbjct: 120 VSRLAIGIVVVVWAFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKS 179

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGNIGKTLLSL+S+ FD+LF+ QH
Sbjct: 180 TVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNIGKTLLSLISIFFDILFMFQH 239

Query: 181 YVLYPAKKAVISSKLSKDGGVEPLLKSSDH 210
           YVLYP KKA  S +  ++   EPL+ SS  
Sbjct: 240 YVLYPEKKASKSLETGEESN-EPLIDSSHE 268

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2168843	270	AT5G40670 "AT5G40670" [Arabido	0.967	0.774	0.625	1.5e-67
ZFIN|ZDB-GENE-050522-352	384	ctns "cystinosis, nephropathic	0.842	0.473	0.434	1.3e-36
DICTYBASE|DDB_G0279445	284	ctns "cystinosin" [Dictyosteli	0.861	0.654	0.391	2.7e-36
UNIPROTKB|E1BXK0	377	CTNS "Uncharacterized protein"	0.842	0.482	0.407	2e-33
UNIPROTKB|A7MB63	367	CTNS "Cystinosin" [Bos taurus	0.856	0.504	0.368	2.6e-31
UNIPROTKB|E2R8H4	388	CTNS "Uncharacterized protein"	0.907	0.505	0.358	8.8e-31
UNIPROTKB|F1RLI8	373	CTNS "Uncharacterized protein"	0.893	0.517	0.368	8.8e-31
UNIPROTKB|O60931	367	CTNS "Cystinosin" [Homo sapien	0.842	0.495	0.385	2.3e-30
RGD|1308466	367	Ctns "cystinosin, lysosomal cy	0.856	0.504	0.385	3.8e-30
MGI|MGI:1932872	367	Ctns "cystinosis, nephropathic	0.856	0.504	0.385	6.2e-30

TAIR|locus:2168843 AT5G40670 "AT5G40670" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 132/211 (62%), Positives = 159/211 (75%)

Query:     1 MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQK 60
             MIYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QK
Sbjct:    60 MIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQK 119

Query:    61 VSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             VS++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKS
Sbjct:   120 VSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKS 179

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT             + QH
Sbjct:   180 TVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQH 239

Query:   181 YVLYPAKKAVISSKLSKDGGVEPLLKSS-DH 210
             YVLYP KK   S +  ++   EPL+ SS +H
Sbjct:   240 YVLYPEKKVSKSPETGEESN-EPLIDSSHEH 269

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

ZFIN|ZDB-GENE-050522-352 ctns "cystinosis, nephropathic" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/184 (43%), Positives = 123/184 (66%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++NV LF+ + +Q+++ +K   + +IPV ANDV FS+HA+LLT++ + Q AIYERG QKV
Sbjct:   180 VFNVGLFWVTYIQEEFLKK-DPNGVIPVDANDVFFSLHALLLTLVYICQCAIYERGGQKV 238

Query:    62 SKISMAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             SK+++ ++++ W  A V  FVA+    SWL  + +F+ I++ +TL+KYIPQA MN+RRKS
Sbjct:   239 SKVAIGLLAIGWTFAFVSLFVAVAKKISWLDYLYYFSYIKLGVTLVKYIPQAHMNYRRKS 298

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T+G+SIGN+LLDF GG  +  QM +++ + + W   +G+  K              I QH
Sbjct:   299 TEGWSIGNVLLDFTGGSFSLIQMFLEAYNNDKWRFIFGDPTKFGLGIFSIFFDILFIIQH 358

Query:   181 YVLY 184
             Y LY
Sbjct:   359 YCLY 362

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279445 ctns "cystinosin" [Dictyostelium discoideum (taxid:44689)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/189 (39%), Positives = 115/189 (60%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++N VL+F   V+ +Y+ KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK 
Sbjct:    56 VFNSVLYFDKLVKNEYYDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKN 113

Query:    62 SKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             SK+ + I +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KS
Sbjct:   114 SKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKS 173

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T G+S+ N+LLDF GG  +  QM +   D  +W  F G+  K              I QH
Sbjct:   174 TSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQH 233

Query:   181 YVLYPAKKA 189
             Y+LY   K+
Sbjct:   234 YILYRNPKS 242

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|E1BXK0 CTNS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 75/184 (40%), Positives = 111/184 (60%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++NV LF+   +++++   Y    + PVA NDV FS+HAV LT++T+ Q  IYER  QKV
Sbjct:   186 VFNVGLFWIPLIKEEFLLHYPNG-VNPVAINDVFFSLHAVALTLLTIIQCCIYERAGQKV 244

Query:    62 SKISMAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             SK  + ++++ W+      F+A     +WL  +  F+ I++ +TLIKY PQA MNFRRKS
Sbjct:   245 SKTVVGLLALAWIFTFTTLFLAAAEEMTWLQFLFCFSYIKLAVTLIKYFPQAYMNFRRKS 304

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T G+SIGN+LLDF+GG  +  QM +QS + + W   +G+  K              + QH
Sbjct:   305 TVGWSIGNVLLDFIGGSFSLLQMFLQSYNNDEWKLIFGDPTKFGLGVFSIIFDIVFMVQH 364

Query:   181 YVLY 184
             Y LY
Sbjct:   365 YCLY 368

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

UNIPROTKB|A7MB63 CTNS "Cystinosin" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 69/187 (36%), Positives = 111/187 (59%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++N+ LF+  ++++Q+  KY    + PV +NDV FS+HAV LT++ + Q  +YERG Q+V
Sbjct:   175 VFNIGLFWVPSIKEQFLLKYPNG-VNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRV 233

Query:    62 SKISMAIVSVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             S ++++ + + WL   +   +A    + WL  +  F+ I++ +TL+KY PQA MNF  KS
Sbjct:   234 SWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKS 293

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH
Sbjct:   294 TEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQH 353

Query:   181 YVLYPAK 187
             + LY  K
Sbjct:   354 FCLYRKK 360

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8H4 CTNS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 71/198 (35%), Positives = 114/198 (57%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++N+ L +  ++++Q+F KY    + PV +NDV FS+HAV LT++ + Q  +YERG Q V
Sbjct:   175 VFNIGLLWVPSIKEQFFLKYPNG-VNPVDSNDVFFSLHAVALTLVVMVQCFLYERGTQHV 233

Query:    62 SKISMAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             S  +++ + + W+   V   +A     +WL  +  F+ I++ +TLIKY PQA MNF  KS
Sbjct:   234 SWPAISFLVLSWVFVLVTMILAAVRVITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKS 293

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH
Sbjct:   294 TEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIFFDIVFFIQH 353

Query:   181 YVLYPAKKAVISSKLSKD 198
             + LY  K  + +++   D
Sbjct:   354 FCLYRKKPGLQAAQTGSD 371

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|F1RLI8 CTNS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 73/198 (36%), Positives = 114/198 (57%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++N+ L +   +++Q+  KY    + PV +NDV FS+HAV LT++ L Q  +YERG Q+V
Sbjct:   175 VFNIGLLWVPYIKEQFLLKYPNG-VNPVVSNDVFFSLHAVALTLVVLVQCCLYERGNQRV 233

Query:    62 SKISMAIVSVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             S  +++ + + WL       VA + + +WL  +  F+ I++ +TLIKY PQA MNF  KS
Sbjct:   234 SWPAISFLVLSWLFTLTALIVAAVGSITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKS 293

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH
Sbjct:   294 TEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDIVFFIQH 353

Query:   181 YVLY---PAKKAVISSKL 195
             + LY   P  +A I  ++
Sbjct:   354 FCLYRKKPGLQAAIPGRI 371

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|O60931 CTNS "Cystinosin" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 71/184 (38%), Positives = 108/184 (58%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++N+ L +   +++Q+  KY    + PV +NDV FS+HAV+LT+I + Q  +YERG Q+V
Sbjct:   175 VFNIGLLWVPYIKEQFLLKYPNG-VNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRV 233

Query:    62 SKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             S  ++  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KS
Sbjct:   234 SWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKS 293

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K                QH
Sbjct:   294 TEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQH 353

Query:   181 YVLY 184
             + LY
Sbjct:   354 FCLY 357

GO:0016021 "integral to membrane" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=NAS

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IMP;NAS

GO:0015811 "L-cystine transport" evidence=IDA;IMP;NAS

GO:0007420 "brain development" evidence=IMP

GO:0050890 "cognition" evidence=IMP

GO:0005765 "lysosomal membrane" evidence=IDA;NAS

GO:0005764 "lysosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0006749 "glutathione metabolic process" evidence=IMP

GO:0046034 "ATP metabolic process" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

RGD|1308466 Ctns "cystinosin, lysosomal cystine transporter" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 72/187 (38%), Positives = 105/187 (56%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++N+ L +   +Q+++  KY    + PV  ND  FS+HAV LT+I + Q  +YERG Q+V
Sbjct:   175 VFNIGLLWVPYIQEEFLLKYPNG-VNPVDINDAFFSLHAVALTLIVILQCCLYERGNQRV 233

Query:    62 SKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             S+ S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KS
Sbjct:   234 SRPSIGFLVLAWLFILVTMIVAAVGVTTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKS 293

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T G+SIG +LLDF GG  +  QM +QS + + W   +G+  K                QH
Sbjct:   294 TKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDIVFFIQH 353

Query:   181 YVLYPAK 187
             + LY  K
Sbjct:   354 FYLYRKK 360

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005770 "late endosome" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006749 "glutathione metabolic process" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0007616 "long-term memory" evidence=IEA;ISO

GO:0007625 "grooming behavior" evidence=IEA;ISO

GO:0007628 "adult walking behavior" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008542 "visual learning" evidence=IEA;ISO

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA;ISO

GO:0015811 "L-cystine transport" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=IEA;ISO

GO:0048058 "compound eye corneal lens development" evidence=IEA;ISO

GO:0050890 "cognition" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

MGI|MGI:1932872 Ctns "cystinosis, nephropathic" [Mus musculus (taxid:10090)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 72/187 (38%), Positives = 105/187 (56%)

Query:     2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
             ++N+ L +   +Q+++  KY    + PV +ND  FS+HAV LT+I + Q  +YERG Q+V
Sbjct:   175 VFNIGLLWVPYIQEEFLLKYPNG-VNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRV 233

Query:    62 SKISMAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
             S  S+  + + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KS
Sbjct:   234 SWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKS 293

Query:   121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQH 180
             T G+SIG +LLDF GG  +  QM +QS + + W   +G+  K                QH
Sbjct:   294 TKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQH 353

Query:   181 YVLYPAK 187
             + LY  K
Sbjct:   354 FYLYRKK 360

GO:0003333 "amino acid transmembrane transport" evidence=IMP;IDA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006749 "glutathione metabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0007616 "long-term memory" evidence=IMP

GO:0007625 "grooming behavior" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008542 "visual learning" evidence=IMP

GO:0015184 "L-cystine transmembrane transporter activity" evidence=ISO;IMP;IDA

GO:0015811 "L-cystine transport" evidence=ISO;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0048058 "compound eye corneal lens development" evidence=IMP

GO:0050890 "cognition" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P57758	CTNS_ARATH	No assigned EC number	0.6666	0.9675	0.7740	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020590001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (274 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
TIGR00951	220	TIGR00951, 2A43, Lysosomal Cystine Transporter	8e-29
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	5e-11
smart00679	32	smart00679, CTNS, Repeated motif present between t	1e-07

>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter

 Score =  107 bits (268), Expect = 8e-29
 Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 16/184 (8%)

Query: 2   IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 61
           I+N +  +  ++  ++           V  NDV F++HA+L+  I L Q   YERG Q+V
Sbjct: 52  IFNFLQLYCWSITNEFPLSSPG-----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRV 106

Query: 62  SKISMAIVSVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKS 120
           S   +  + V  LA      VAL +    L  +   + I+V +TL+KY PQA  N+  KS
Sbjct: 107 SNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKS 166

Query: 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQH 180
           T   SI  + LDF G      Q I QS      VN  G+  K  L +VS +F+ LF  Q 
Sbjct: 167 TGQLSIITVFLDFTGLL----QRIFQS------VNETGDPLKAGLFVVSSLFNGLFAAQV 216

Query: 181 YVLY 184
           +  +
Sbjct: 217 FFYW 220

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 220

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 55.6 bits (135), Expect = 5e-11
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 92  LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN 151
           L N    I +++ L+ YIPQ I N+RRKST+G SI  +LL  LG        I+      
Sbjct: 1   LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 45.9 bits (110), Expect = 1e-07
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 106 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGG 136
           +  +PQ I N+RRKST+G SI  +LL  LG 
Sbjct: 1   VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD 31

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	100.0
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	100.0
PF04193	61	PQ-loop: PQ loop repeat	99.36
KOG2913	260	consensus Predicted membrane protein [Function unk	99.32
KOG2913	260	consensus Predicted membrane protein [Function unk	99.25
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	99.17
smart00679	32	CTNS Repeated motif present between transmembrane	98.95
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	98.65
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	98.17
COG4095	89	Uncharacterized conserved protein [Function unknow	97.97
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	97.73
KOG2489	592	consensus Transmembrane protein [General function	95.91
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	95.38
KOG1623	243	consensus Multitransmembrane protein [General func	94.6
PHA02246	192	hypothetical protein	94.4
KOG1623	243	consensus Multitransmembrane protein [General func	93.0
PF00810	147	ER_lumen_recept: ER lumen protein retaining recept	89.37

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-52  Score=362.03  Aligned_cols=191  Identities=52%  Similarity=0.861  Sum_probs=179.4

Q ss_pred             CeeeecccccHHHHHHHHHhcCCCCCCCeechhHHHHHHHHHHHHHHHhhheeecCCCcccch-hHHHHHHHHHHHHHHh
Q 027938            1 MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSK-ISMAIVSVVWLAAAVC   79 (216)
Q Consensus         1 ~~~n~~~~~s~~ir~qy~~r~~~~~~~~V~~~Dv~f~~h~~~l~~i~~~Q~~~Y~r~~q~~s~-~~~~i~~~~~~~~~~~   79 (216)
                      ++||+++||+|.+++||..++|+| .|||..||++||+||++++++++.||+.|+|++|++|+ .+.+++.++|+++.++
T Consensus       171 ~ifn~~ly~~~~iq~~y~~~~p~g-~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~  249 (372)
T KOG3145|consen  171 SIFNFLLYYCPKIQNQYDTSYPLG-VPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVF  249 (372)
T ss_pred             HHHHHHHHhcHHhccceeccCCCC-CCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHH
Confidence            479999999999999999999966 49999999999999999999999999999999999999 6888888999988888


Q ss_pred             Hhhcc-CCCChHHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCccccccc
Q 027938           80 FFVAL-PNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYG  158 (216)
Q Consensus        80 ~~~~~-~~~~~~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~  158 (216)
                      +..+. .+..|+|..+.++++|..++++||+||.++||.||||+||||+++++|++||.++++|+++++.|++||..+.+
T Consensus       250 ~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~g  329 (372)
T KOG3145|consen  250 MYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYG  329 (372)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhc
Confidence            87775 45679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 027938          159 NIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVIS  192 (216)
Q Consensus       159 n~~~l~~~~~~i~~d~iil~Q~y~lY~~~~~~~~  192 (216)
                      ||+|+++|+++++||++|+.|||++|++++..+.
T Consensus       330 np~KfGLg~vSi~FdiiFm~QhyVly~~~~~~~s  363 (372)
T KOG3145|consen  330 NPGKFGLGLVSIFFDIIFMMQHYVLYPRGHVLKS  363 (372)
T ss_pred             CchhhhhhhHHHHHHHHHHhhheeEeccccccCC
Confidence            9999999999999999999999999987765443

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=100.00  E-value=2.2e-34  Score=245.80  Aligned_cols=168  Identities=36%  Similarity=0.518  Sum_probs=144.1

Q ss_pred             eeeecccccHHHHHHHHHhcCCCCCCCeechhHHHHHHHHHHHHHHHhhheeecCCCcccchhHHHHHHHHHHHHHHhHh
Q 027938            2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFF   81 (216)
Q Consensus         2 ~~n~~~~~s~~ir~qy~~r~~~~~~~~V~~~Dv~f~~h~~~l~~i~~~Q~~~Y~r~~q~~s~~~~~i~~~~~~~~~~~~~   81 (216)
                      +||+++||+|.+|+||..|+| +    |+.||++|++|+++++++++.|+..|+|++|++|..+.+.+...+....++..
T Consensus        52 ~yn~~~~~~~~~~~~~~~~~~-~----v~~edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  126 (220)
T TIGR00951        52 IFNFLQLYCWSITNEFPLSSP-G----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLL  126 (220)
T ss_pred             HHHHHHhcchhhhhccccccC-C----CcHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHH
Confidence            689999999999999998886 2    99999999999999999999999999988999999988666544332222222


Q ss_pred             hc-cCCCChHHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccch
Q 027938           82 VA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNI  160 (216)
Q Consensus        82 ~~-~~~~~~~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~  160 (216)
                      .. .....|+++.+.++++|..++++||+||+++|||||||+|||+.++++|++|    .+|+++++.++.      +|+
T Consensus       127 ~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G----~lqri~ts~~~~------gd~  196 (220)
T TIGR00951       127 VALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTG----LLQRIFQSVNET------GDP  196 (220)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHH----HHHHHHHHHHHc------CCH
Confidence            11 2456899999999999999999999999999999999999999999999999    666677765432      899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcc
Q 027938          161 GKTLLSLVSVVFDLLFICQHYVLYP  185 (216)
Q Consensus       161 ~~l~~~~~~i~~d~iil~Q~y~lY~  185 (216)
                      +|++++.+++++|.+++.||| +|+
T Consensus       197 ~~l~~~~~s~~~n~i~~~Q~~-~y~  220 (220)
T TIGR00951       197 LKAGLFVVSSLFNGLFAAQVF-FYW  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hcC
Confidence            999999999999999999998 664

>PF04193 PQ-loop: PQ loop repeat

Probab=99.36  E-value=1.7e-12  Score=89.08  Aligned_cols=55  Identities=31%  Similarity=0.510  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhh
Q 027938           93 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS  147 (216)
Q Consensus        93 ~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~  147 (216)
                      .+.+|+++.++++++++||+++|||+||++|+|+.++.++++|+++.+++.+++.
T Consensus         2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~   56 (61)
T PF04193_consen    2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSN   56 (61)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567999999999999999999999999999999999999999999999988764

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=99.32  E-value=1.1e-11  Score=108.32  Aligned_cols=92  Identities=22%  Similarity=0.220  Sum_probs=79.5

Q ss_pred             CChHHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHH
Q 027938           87 HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLS  166 (216)
Q Consensus        87 ~~~~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~  166 (216)
                      .+|..+...+|.++.+.+++..+||+++|||+||++|+|+.+++.|+.|+++.+.+..+..          +++..+..+
T Consensus         3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~----------~~~~~~~~~   72 (260)
T KOG2913|consen    3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP----------LGSTLKVQA   72 (260)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc----------cchhHHHHH
Confidence            3566678889999999999999999999999999999999999999999999999988743          346667778


Q ss_pred             HHHHHHHHHHHHHHHhhccCCcc
Q 027938          167 LVSVVFDLLFICQHYVLYPAKKA  189 (216)
Q Consensus       167 ~~~i~~d~iil~Q~y~lY~~~~~  189 (216)
                      ..-++.|.+.+.|.+ +|++..+
T Consensus        73 ~yy~~~d~~l~~q~~-yy~~~~~   94 (260)
T KOG2913|consen   73 VYYTLADSVLFVQCL-YYGNIYP   94 (260)
T ss_pred             HHHHHHHHHHHHHHH-hcchhcc
Confidence            888899999999964 7765544

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=99.25  E-value=3e-12  Score=111.89  Aligned_cols=87  Identities=28%  Similarity=0.339  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHH
Q 027938           91 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSV  170 (216)
Q Consensus        91 ~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i  170 (216)
                      ..+..+|++++.++...++|||++|++||||+|+|+.++.+...|+.++..+           +.+..|.||+.++..++
T Consensus       164 ~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s-----------~~~~~n~~w~~~~~~~~  232 (260)
T KOG2913|consen  164 SLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS-----------SYLVTNLPWLVDSKGTI  232 (260)
T ss_pred             chHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc-----------cccccCCcccccCCcch
Confidence            3666789999999999999999999999999999999999999999999776           33457899999999999


Q ss_pred             HHHHHHHHHHHhhccCCcc
Q 027938          171 VFDLLFICQHYVLYPAKKA  189 (216)
Q Consensus       171 ~~d~iil~Q~y~lY~~~~~  189 (216)
                      .+|++++.|.+ .||+++.
T Consensus       233 ~~D~~~~~q~~-~~~~~~~  250 (260)
T KOG2913|consen  233 YLDIFIFLQFF-NYRASKA  250 (260)
T ss_pred             hHHHHHHHHHH-Hhhcccc
Confidence            99999999987 7777663

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=99.17  E-value=1.6e-10  Score=99.00  Aligned_cols=91  Identities=21%  Similarity=0.276  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhc---ccCcccccccch----hhHHHH
Q 027938           94 NFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI---DQNSWVNFYGNI----GKTLLS  166 (216)
Q Consensus        94 ~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~---~~~~~~~i~~n~----~~l~~~  166 (216)
                      ..+|++..+.+.++++||+++||||||++|+|+.++.++++|...+.+..+..-.   .+++..  ..++    -.+..+
T Consensus         5 ~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~--~~~~~v~~edl~~a   82 (220)
T TIGR00951         5 QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFP--LSSPGVTQNDVFFT   82 (220)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccc--cccCCCcHHHHHHH
Confidence            5679999999999999999999999999999999999999999999988654321   111111  1122    358889


Q ss_pred             HHHHHHHHHHHHHHHhhccCC
Q 027938          167 LVSVVFDLLFICQHYVLYPAK  187 (216)
Q Consensus       167 ~~~i~~d~iil~Q~y~lY~~~  187 (216)
                      +..++.+++++.|.. .|+++
T Consensus        83 i~~~il~~l~~~q~~-~~~~~  102 (220)
T TIGR00951        83 LHAILICFIVLHQCG-DYERG  102 (220)
T ss_pred             HHHHHHHHHHHHHHh-hcccc
Confidence            999999999999975 66543

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=98.95  E-value=4.2e-10  Score=67.65  Aligned_cols=32  Identities=50%  Similarity=0.748  Sum_probs=29.8

Q ss_pred             hhcchhhhhhhhcCCcCCcChHHHHHHHHhhH
Q 027938          106 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC  137 (216)
Q Consensus       106 ~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v  137 (216)
                      ++++||+++|||+||++|+|+.++++++.|++
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~   32 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI   32 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence            46899999999999999999999999999974

Function unknown, but likely to be associated with the glycosylation machinery.

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=98.65  E-value=6.3e-09  Score=91.85  Aligned_cols=97  Identities=22%  Similarity=0.265  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhc---ccCcc--cc-cccchh---h
Q 027938           92 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI---DQNSW--VN-FYGNIG---K  162 (216)
Q Consensus        92 ~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~---~~~~~--~~-i~~n~~---~  162 (216)
                      .-.++||+--+-+.+++.||+++||||||++|+|..++.++++|-..+.+..++.-.   .+++.  .. ...+|.   -
T Consensus       123 l~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nD  202 (372)
T KOG3145|consen  123 LDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLND  202 (372)
T ss_pred             HHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhh
Confidence            344567877788999999999999999999999999999999998888776554322   22222  21 111221   2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCcc
Q 027938          163 TLLSLVSVVFDLLFICQHYVLYPAKKA  189 (216)
Q Consensus       163 l~~~~~~i~~d~iil~Q~y~lY~~~~~  189 (216)
                      +.-++..+++.+|.+.|+. .|.+...
T Consensus       203 v~fslHa~lmt~Iti~Qc~-~yeR~~q  228 (372)
T KOG3145|consen  203 VVFSLHAVLMTVITILQCF-FYERGWQ  228 (372)
T ss_pred             hhhhHHHHHHHHHHHHHHH-hhhhccc
Confidence            6678899999999999986 7865443

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=98.17  E-value=6.1e-06  Score=69.71  Aligned_cols=90  Identities=20%  Similarity=0.292  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHH
Q 027938           90 LWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVS  169 (216)
Q Consensus        90 ~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~  169 (216)
                      .|+....-.....+..++++||+..|||+|+|..+|....++.+.|.....+.-+-+          .+++..++.-.++
T Consensus       139 ~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~----------t~d~~mll~~v~s  208 (230)
T KOG3211|consen  139 LWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQE----------TGDFLMLLRFVIS  208 (230)
T ss_pred             HHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHh----------cCChhhHHHHHHH
Confidence            344444444456678899999999999999999999999999999999997765532          2345555666788


Q ss_pred             HHHHHHHHHHHHhhccCCccc
Q 027938          170 VVFDLLFICQHYVLYPAKKAV  190 (216)
Q Consensus       170 i~~d~iil~Q~y~lY~~~~~~  190 (216)
                      .+.+.++..|.. .|++++++
T Consensus       209 ~~~Ng~i~aq~l-~Y~s~~~~  228 (230)
T KOG3211|consen  209 LALNGLITAQVL-RYWSTAIK  228 (230)
T ss_pred             HHHhHHHHHHHH-HHHhcCCC
Confidence            899999999976 88876553

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=6.4e-05  Score=55.34  Aligned_cols=74  Identities=18%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHHHH
Q 027938           94 NFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFD  173 (216)
Q Consensus        94 ~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~~d  173 (216)
                      ...|+++..++.+.++||..+-+|.|+|++.|+.++..-..|-.++++.-++-    +       +.|-+..-.+++.+.
T Consensus         6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi----~-------~lPii~aN~i~~il~   74 (89)
T COG4095           6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILI----N-------DLPIIIANIISFILS   74 (89)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH----c-------cCcchhHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999888865542    1       334444444555555


Q ss_pred             HHHHH
Q 027938          174 LLFIC  178 (216)
Q Consensus       174 ~iil~  178 (216)
                      +++++
T Consensus        75 liIl~   79 (89)
T COG4095          75 LIILF   79 (89)
T ss_pred             HHHHH
Confidence            55554

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=97.73  E-value=8.8e-05  Score=54.06  Aligned_cols=81  Identities=23%  Similarity=0.403  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHHHHHH
Q 027938           96 FNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLL  175 (216)
Q Consensus        96 lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~~d~i  175 (216)
                      ++.+..++...+.+||+.+.+|+||++++|+...+..++++.+++..-++    .+||..+..|..       .+++.++
T Consensus         6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l----~~d~~i~~~N~~-------g~~~~~~   74 (87)
T PF03083_consen    6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL----INDWPIIVPNVF-------GLVLSII   74 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh----cCCeeEEeeHHH-------HHHHHHH
Confidence            34555667778889999999999999999999999999999999876554    456766666653       3344445


Q ss_pred             HHHHHHhhccCCc
Q 027938          176 FICQHYVLYPAKK  188 (216)
Q Consensus       176 il~Q~y~lY~~~~  188 (216)
                      .++-++ .|++++
T Consensus        75 ~~~~~~-~y~~~~   86 (87)
T PF03083_consen   75 YLVVYY-IYPSKK   86 (87)
T ss_pred             HHhheE-EeCCCC
Confidence            555544 565544

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>KOG2489 consensus Transmembrane protein [General function prediction only]

Probab=95.91  E-value=0.11  Score=49.48  Aligned_cols=56  Identities=21%  Similarity=0.386  Sum_probs=41.3

Q ss_pred             HHhHhhccCCCCh-HHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHH
Q 027938           77 AVCFFVALPNHSW-LWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD  132 (216)
Q Consensus        77 ~~~~~~~~~~~~~-~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~  132 (216)
                      .+.+.+..+|.+| .|+++.+...-..+-++--.||...|||-||+.-+.=.++.--
T Consensus       452 aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tYK  508 (592)
T KOG2489|consen  452 AVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTYK  508 (592)
T ss_pred             HHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHHH
Confidence            4555555688998 6777775433355667777899999999999999987665543

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=95.38  E-value=0.05  Score=46.35  Aligned_cols=83  Identities=17%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHH
Q 027938           92 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV  171 (216)
Q Consensus        92 ~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~  171 (216)
                      +...+|+.-..-++.-.+|||.+--..||.+|+|...+.+.+.|-..++....-.+..   ++.       .+=..+-++
T Consensus        30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~p---Fss-------~gE~~fLl~   99 (230)
T KOG3211|consen   30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYP---FSS-------YGEYPFLLL   99 (230)
T ss_pred             HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCC---chh-------HHHHHHHHH
Confidence            4555777778888888999999999999999999999999999988886655432211   111       222334455


Q ss_pred             HHHHHHHHHHhhcc
Q 027938          172 FDLLFICQHYVLYP  185 (216)
Q Consensus       172 ~d~iil~Q~y~lY~  185 (216)
                      =+.+++.+.+ .|+
T Consensus       100 Q~vili~~if-~f~  112 (230)
T KOG3211|consen  100 QAVILILCIF-HFS  112 (230)
T ss_pred             HHHHHHHHHH-Hhc
Confidence            5777788876 676

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=94.60  E-value=0.13  Score=44.97  Aligned_cols=87  Identities=18%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHH
Q 027938           92 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV  171 (216)
Q Consensus        92 ~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~  171 (216)
                      +...+|.+..+.-+.+-+|-.+.-+|||||||.|..-+++.+.++.+++-.-+..   .+|+..+.-|-       +.++
T Consensus         8 l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~---~~d~llitIN~-------~G~~   77 (243)
T KOG1623|consen    8 LFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLK---VHDYLLITING-------IGLV   77 (243)
T ss_pred             HHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhc---cCceEEEEEeh-------hcHH
Confidence            3434454445555677789999999999999999999999999999997644331   22666666664       2223


Q ss_pred             HHHHHHHHHHhhccCCcc
Q 027938          172 FDLLFICQHYVLYPAKKA  189 (216)
Q Consensus       172 ~d~iil~Q~y~lY~~~~~  189 (216)
                      .-.+.+.=+ .+|..+|+
T Consensus        78 ie~~Yi~~f-~~ya~~k~   94 (243)
T KOG1623|consen   78 IETVYISIF-LYYAPKKK   94 (243)
T ss_pred             HHHHHHHHH-heecCchh
Confidence            334444443 36765554

>PHA02246 hypothetical protein

Probab=94.40  E-value=0.2  Score=40.94  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=35.5

Q ss_pred             HHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHh
Q 027938          101 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV  145 (216)
Q Consensus       101 ~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~  145 (216)
                      ...-...|+|||+.=||.|+.||-+++..+.--.|-.+-...+++
T Consensus       117 t~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L  161 (192)
T PHA02246        117 TITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL  161 (192)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence            455567899999999999999999999877766665555555555

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=93.00  E-value=1.8  Score=37.85  Aligned_cols=62  Identities=13%  Similarity=0.045  Sum_probs=36.4

Q ss_pred             HhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHH
Q 027938          105 LIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSV  170 (216)
Q Consensus       105 ~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i  170 (216)
                      ..+-+--+.+=-|+||||.++...-+..++-+..+.+.-++    -+|.....-|..-+.++++++
T Consensus       140 ~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGll----i~D~~IaipN~iG~~l~~~QL  201 (243)
T KOG1623|consen  140 FAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLL----IKDFFIAIPNVLGFLLGLIQL  201 (243)
T ss_pred             hhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHH----hcCeEEEcccHHHHHHHHHHH
Confidence            33444445566778999999998766665555555443322    234444445654455555554

>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway

Probab=89.37  E-value=5.7  Score=31.99  Aligned_cols=50  Identities=8%  Similarity=0.150  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHH
Q 027938           91 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNY  140 (216)
Q Consensus        91 ~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl  140 (216)
                      ++.+++=..+..+.+++-+||..+-.|++.+|.+....++.-.+.-++++
T Consensus        91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~  140 (147)
T PF00810_consen   91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYL  140 (147)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHH
Confidence            45555556678999999999999999999999999998887755555543

The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00