Citrus Sinensis ID: 027945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPKRNLGRGI
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccccHHHcccccccEEEEccccccccccccHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHcccccEEEEEEEccccccccccccccEEEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccccEEEcccccHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEccccccccccccHHHHHHHHHHHcccEEEHcccccHHHHHHHHHHccccEEEEEEEEEEcccccHEcHccccEEEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MKLKQLESVLgdleqfsnpkveleqyptgphiaSRMLYTAensfgdvsnkvvadfgcgcgtlGAAATLLGADQVIAIDIDSDSLELASEnaadleldidFVQCDIRNLEWRVCSVGhvdtvvmnppfgtrkkgvdMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRfvpkrnlgrgi
Flexible Loop (DISEMBL)
mklkqlesVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVghvdtvvmnppfgtrKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFhkkkevdiavdlwrfvpkrnlgrgi
Low Complexity Region (SEG)
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFgcgcgtlgaaatllgaDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPKRNLGRGI
Disordered region (IsUnstruct)
*****************************PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVP********
Disordered Region (DISOPRED)
*KLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVP*R******
Disordered Region (DISEMBL)
********VLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPKRNLGRGI
Disordered Region (DISPRO)
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPKR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPKRNLGRGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q8K1A0	209	Methyltransferase-like pr	yes	no	0.935	0.966	0.533	1e-57
Q9NRN9	209	Methyltransferase-like pr	yes	no	0.935	0.966	0.543	2e-56
Q57732	219	Uncharacterized protein M	yes	no	0.921	0.908	0.379	7e-31
Q1QA78	308	Ribosomal protein L11 met	yes	no	0.296	0.207	0.434	4e-07
B0VLL0	301	Ribosomal protein L11 met	yes	no	0.300	0.215	0.469	4e-07
C4K4P6	305	Ribosomal protein L11 met	yes	no	0.300	0.213	0.424	5e-07
A5IN97	264	Ribosomal protein L11 met	yes	no	0.333	0.272	0.383	6e-07
A7MXI3	295	Ribosomal protein L11 met	yes	no	0.300	0.220	0.439	6e-07
Q3IIC0	293	Ribosomal protein L11 met	yes	no	0.300	0.221	0.439	7e-07
Q4FRP0	308	Ribosomal protein L11 met	yes	no	0.319	0.224	0.418	7e-07

>sp|Q8K1A0|METL5_MOUSE Methyltransferase-like protein 5 OS=Mus musculus GN=Mettl5 PE=2 SV=2

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 144/208 (69%), Gaps = 6/208 (2%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           +KLK+LES L +++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NK VAD GCGCG
Sbjct: 4   LKLKELESRLQEVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKAVADLGCGCG 63

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
            L   A +LGA   +  DID D+LE+ ++N  + EL ++D +QCD+ +L  R+  +   D
Sbjct: 64  VLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVYSLSNRMSKL--FD 121

Query: 120 TVVMNPPFGTR-KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
           TV+MNPPFGT+  KG DM FL  AL +A  AVYSLHK+STREH++K A         E++
Sbjct: 122 TVIMNPPFGTKNNKGTDMAFLKTALGMARTAVYSLHKSSTREHIQKKAAE--WKVKIEII 179

Query: 179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
            ELRYD+P LY FHKKK VDI VDL RF
Sbjct: 180 AELRYDLPALYNFHKKKSVDIEVDLIRF 207

Probable methyltransferase.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9NRN9|METL5_HUMAN Methyltransferase-like protein 5 OS=Homo sapiens GN=METTL5 PE=1 SV=1

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/208 (54%), Positives = 142/208 (68%), Gaps = 6/208 (2%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD GCGCG
Sbjct: 4   VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
            L     +LGA   +  DID D+LE+ + NA + EL +ID VQCD+  L  R+      D
Sbjct: 64  VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDVCLLSNRMSK--SFD 121

Query: 120 TVVMNPPFGTR-KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
           TV+MNPPFGT+  KG DM FL  AL++A  AVYSLHK+STREHV+K A         +++
Sbjct: 122 TVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAE--WKIKIDII 179

Query: 179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
            ELRYD+P  YKFHKKK VDI VDL RF
Sbjct: 180 AELRYDLPASYKFHKKKSVDIEVDLIRF 207

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q57732|Y284_METJA Uncharacterized protein MJ0284 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0284 PE=4 SV=1

 Score =  133 bits (335), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 12/211 (5%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           +K K LE +L  L++  NPK +LEQY     +A+ +L+ A N F    N VV D GCG G
Sbjct: 2   IKKKHLEMMLDSLKRHPNPKADLEQYTIDGKLAADILFFAVNDF---YNNVVIDLGCGTG 58

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL--EWRVCSVGH- 117
            L   + +LGA + I IDID +S+E A ENA  L +D+DF   DIR++  E+    +G  
Sbjct: 59  RLAIGSKILGAKRAIGIDIDRESIEAAKENAKKLNVDVDFYCMDIRDVDDEFLNNVLGED 118

Query: 118 ---VDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASS 174
                 V+ NPPFG +KK  D  FL  AL++    +Y++H   T++ V K    +     
Sbjct: 119 RDLKRVVIQNPPFGAQKKHADRVFLDKALEIGD-IIYTIHNYPTKDFVIKYV--EDKGGK 175

Query: 175 AEVLCELRYDVPQLYKFHKKKEVDIAVDLWR 205
              + E  + +P +Y+FHKKK V+I V ++R
Sbjct: 176 ITHIYEAFFRIPAIYEFHKKKVVEIPVVIFR 206

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q1QA78|PRMA_PSYCK Ribosomal protein L11 methyltransferase OS=Psychrobacter cryohalolentis (strain K5) GN=prmA PE=3 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 5/69 (7%)

Query: 26  YPTGPHIASRML--YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83
           + TG H  +R+   +  E    D+++KVV D+GCG G LG AA LLGA  V A+DID  +
Sbjct: 140 FGTGYHATTRLCLDWLTEQ---DLTDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQA 196

Query: 84  LELASENAA 92
           +   ++NAA
Sbjct: 197 VLATNQNAA 205

Methylates ribosomal protein L11.

Psychrobacter cryohalolentis (strain K5) (taxid: 335284)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B0VLL0|PRMA_ACIBS Ribosomal protein L11 methyltransferase OS=Acinetobacter baumannii (strain SDF) GN=prmA PE=3 SV=1

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H AS  L        DV NK+V D+GCG G LG AA LLGA +V A DID  ++ 
Sbjct: 138 FGTGNH-ASTFLCLQWLGKTDVKNKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVL 196

Query: 86  LASENA 91
              +NA
Sbjct: 197 ATKQNA 202

Methylates ribosomal protein L11.

Acinetobacter baumannii (strain SDF) (taxid: 509170)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|C4K4P6|PRMA_HAMD5 Ribosomal protein L11 methyltransferase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=prmA PE=3 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  + +     +S  D+ NK++ DFGCG G L  AA  LGA Q I IDID  ++E
Sbjct: 144 FGTGTHPTTALCLEWLDSL-DLQNKILIDFGCGSGILAIAALKLGAKQAIGIDIDPQAIE 202

Query: 86  LASENA 91
            + +NA
Sbjct: 203 ASRDNA 208

Methylates ribosomal protein L11.

Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) (taxid: 572265)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5IN97|PRMA_THEP1 Ribosomal protein L11 methyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=prmA PE=3 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  +RM       +    N V+ D GCG G L  AA  LGA QV+A+D+D  ++E
Sbjct: 108 FGTGLHPTTRMSVFFLKKYLKEGNTVL-DVGCGTGILAIAAKKLGASQVVAVDVDEQAVE 166

Query: 86  LASENAADLELDI 98
           +A EN    ++D+
Sbjct: 167 VAEENVRKNDVDV 179

Methylates ribosomal protein L11.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A7MXI3|PRMA_VIBHB Ribosomal protein L11 methyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=prmA PE=3 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  + +      S  D+S K V DFGCG G L  AA  LGA++VI IDID  +L+
Sbjct: 138 FGTGTHPTTALCLEWLESL-DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQ 196

Query: 86  LASENA 91
            + +NA
Sbjct: 197 ASRDNA 202

Methylates ribosomal protein L11.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1

 Score = 54.3 bits (129), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 26  YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
           + TG H  + +      S  D++ K V DFGCG G LG AA  LGA+++I IDID  +LE
Sbjct: 137 FGTGTHATTALCLKWLES-QDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALE 195

Query: 86  LASENA 91
            + +NA
Sbjct: 196 ASLDNA 201

Methylates ribosomal protein L11.

Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q4FRP0|PRMA_PSYA2 Ribosomal protein L11 methyltransferase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=prmA PE=3 SV=1

 Score = 54.3 bits (129), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 26  YPTGPHIASRML--YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83
           + TG H  +R+   +  E    D+ +KVV D+GCG G LG AA LLGA  V A+DID  +
Sbjct: 140 FGTGYHATTRLCLDWLTEQ---DLKDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQA 196

Query: 84  LELASENAADLELD 97
           +   ++NAA   +D
Sbjct: 197 VLATNQNAARNSVD 210

Methylates ribosomal protein L11.

Psychrobacter arcticus (strain DSM 17307 / 273-4) (taxid: 259536)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
224142165	213	predicted protein [Populus trichocarpa]	0.972	0.985	0.821	1e-99
225445168	220	PREDICTED: methyltransferase-like protei	0.981	0.963	0.820	4e-99
388509432	207	unknown [Lotus japonicus]	0.949	0.990	0.767	9e-92
242094784	209	hypothetical protein SORBIDRAFT_10g00438	0.953	0.985	0.775	3e-89
357125190	222	PREDICTED: methyltransferase-like protei	0.953	0.927	0.760	6e-89
194705956	211	unknown [Zea mays] gi|195638364|gb|ACG38	0.949	0.971	0.759	3e-88
413942967	211	S-adenosylmethionine-dependent methyltra	0.949	0.971	0.759	4e-88
30688121	208	putative methylase [Arabidopsis thaliana	0.962	1.0	0.767	1e-87
115466582	227	Os06g0162600 [Oryza sativa Japonica Grou	0.953	0.907	0.736	1e-87
222635010	772	hypothetical protein OsJ_20224 [Oryza sa	0.953	0.266	0.736	8e-87

>gi|224142165|ref|XP_002324429.1| predicted protein [Populus trichocarpa] gi|222865863|gb|EEF02994.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 175/213 (82%), Positives = 193/213 (90%), Gaps = 3/213 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLES+LG+L+QFSNPK ELEQYPTGPHIASRMLYTAENS GDVSNK+VADFGCGCG
Sbjct: 1   MKLKQLESMLGELQQFSNPKAELEQYPTGPHIASRMLYTAENSLGDVSNKIVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TLGAAA+L+GA+QVI IDIDS+SLE+AS NA DLELDI+F+QCDIRNL WR      VDT
Sbjct: 61  TLGAAASLMGAEQVIGIDIDSESLEIASLNAEDLELDINFIQCDIRNLVWRGPI---VDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGTR+ G DMDFLS ALK+AS+AVYSLHKTSTREHVKKAALR F ASSAEVLCE
Sbjct: 118 VVMNPPFGTRRNGADMDFLSAALKIASRAVYSLHKTSTREHVKKAALRGFGASSAEVLCE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPKRNLG 213
           LR+DVP+LYKFHKK+E+DIAVDLWRF PK N G
Sbjct: 178 LRFDVPKLYKFHKKREMDIAVDLWRFAPKTNQG 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445168|ref|XP_002284097.1| PREDICTED: methyltransferase-like protein 5 [Vitis vinifera] gi|297738789|emb|CBI28034.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 195/217 (89%), Gaps = 5/217 (2%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLES LGDL+QFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG
Sbjct: 1   MKLKQLESFLGDLQQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGH-VD 119
           TLG AA LLGA+ VI +DID  SLE+AS NA DLELD++FV CD++NL WR    G  VD
Sbjct: 61  TLGVAAALLGAEHVIGLDIDPQSLEIASLNAEDLELDMNFVHCDVKNLGWR----GQIVD 116

Query: 120 TVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLC 179
           TVVMNPPFGTRKKG DMDFL++ALKVASQAVYSLHK+STR+HV+KAALR+FNASSAEVLC
Sbjct: 117 TVVMNPPFGTRKKGADMDFLAVALKVASQAVYSLHKSSTRDHVRKAALRNFNASSAEVLC 176

Query: 180 ELRYDVPQLYKFHKKKEVDIAVDLWRFVPKRNLGRGI 216
           ELRYDV QLYKFHKKKEVDIAVDLWRFVP+++   GI
Sbjct: 177 ELRYDVQQLYKFHKKKEVDIAVDLWRFVPQKDKLGGI 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509432|gb|AFK42782.1| unknown [Lotus japonicus]

 Score =  341 bits (875), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 162/211 (76%), Positives = 187/211 (88%), Gaps = 6/211 (2%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L+QF +PKVELEQYPTGPHIASRML+TAENSFGDVS+KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLDQFPHPKVELEQYPTGPHIASRMLFTAENSFGDVSDKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TLG AA LLGA+ V+ IDID +SLE+A+ NA +LELD+DF+Q ++ +L WR      VDT
Sbjct: 61  TLGIAAALLGAEHVVCIDIDPESLEIATLNAEELELDMDFIQSNLLDLGWR------VDT 114

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           V+MNPPFGTRKKG D+DF+S+ALKVASQAVYSLHKTSTR+HVK+ ALRDF ASSAEVLCE
Sbjct: 115 VIMNPPFGTRKKGADLDFVSVALKVASQAVYSLHKTSTRDHVKRTALRDFGASSAEVLCE 174

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPKRN 211
           LR+DVP+LYKFHKKKEVDIAVDLW+FVP  N
Sbjct: 175 LRFDVPKLYKFHKKKEVDIAVDLWQFVPASN 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242094784|ref|XP_002437882.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor] gi|241916105|gb|EER89249.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/209 (77%), Positives = 174/209 (83%), Gaps = 3/209 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L QF NPKVELEQYPTGPHIASRMLYTAENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLTQFPNPKVELEQYPTGPHIASRMLYTAENSFDDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TL   + LL A+ V+ IDID  SLELA ENAADLELDID V  DI+NL  +     HVDT
Sbjct: 61  TLAVGSALLEAEHVLGIDIDPQSLELAQENAADLELDIDLVWSDIKNLNLKGV---HVDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGTR+ G DM+FLSM LKVASQAVYSLHKTSTREH+KK ALR  NA SAEVLCE
Sbjct: 118 VVMNPPFGTRRNGADMEFLSMGLKVASQAVYSLHKTSTREHIKKMALRGCNARSAEVLCE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPK 209
           LRY +PQ YKFHKKKEVDIAVDLWRFVPK
Sbjct: 178 LRYGLPQTYKFHKKKEVDIAVDLWRFVPK 206

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125190|ref|XP_003564278.1| PREDICTED: methyltransferase-like protein 5-like [Brachypodium distachyon]

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 159/209 (76%), Positives = 177/209 (84%), Gaps = 3/209 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L QFSNPKVELEQY TGPHIASRMLYTAENSFGD++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLTQFSNPKVELEQYATGPHIASRMLYTAENSFGDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TL  A+ LL A+ V  IDID  SLELA ENA DLELDID +QCDI+NL  +      VDT
Sbjct: 61  TLAVASALLDAEHVTGIDIDLQSLELAQENADDLELDIDLIQCDIKNLNLKGLL---VDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGT++ G DM+FLSM LK ASQAVYSLHKTSTRE++KKAALR+ NA SAEVLCE
Sbjct: 118 VVMNPPFGTKRNGADMEFLSMGLKAASQAVYSLHKTSTREYIKKAALRNCNALSAEVLCE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPK 209
           LRYD+PQ Y+FHKKKEVD+AVDLWRFVP+
Sbjct: 178 LRYDLPQTYEFHKKKEVDVAVDLWRFVPR 206

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194705956|gb|ACF87062.1| unknown [Zea mays] gi|195638364|gb|ACG38650.1| S-adenosylmethionine-dependent methyltransferase [Zea mays]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 158/208 (75%), Positives = 176/208 (84%), Gaps = 3/208 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L QFS+PK+ELEQY TGPHIASRMLY AENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLTQFSDPKLELEQYATGPHIASRMLYMAENSFNDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TL  A+ LL A+ V+ IDID  SLELA ENAADLELDID V  DI+NL  +     HVDT
Sbjct: 61  TLAVASALLDAEHVLGIDIDPQSLELAQENAADLELDIDLVWSDIKNLNLKGV---HVDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGTR+ G DM+FLSMAL+VASQAVYSLHKTSTREH+KKAALR FNA SAEVLCE
Sbjct: 118 VVMNPPFGTRRNGADMEFLSMALQVASQAVYSLHKTSTREHIKKAALRGFNAISAEVLCE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVP 208
           LRY++P+ YK HKKKE+DIAVDLWRFVP
Sbjct: 178 LRYNLPRTYKLHKKKEIDIAVDLWRFVP 205

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413942967|gb|AFW75616.1| S-adenosylmethionine-dependent methyltransferase [Zea mays]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/208 (75%), Positives = 176/208 (84%), Gaps = 3/208 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LG L QFS+PK+ELEQY TGPHIASRMLY AENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGGLTQFSDPKLELEQYATGPHIASRMLYMAENSFNDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TL  A+ LL A+ V+ IDID  SLELA ENAADLELDID V  DI+NL  +     HVDT
Sbjct: 61  TLAVASALLDAEHVLGIDIDPTSLELAQENAADLELDIDLVWSDIKNLNLKGV---HVDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGTR+ G DM+FLSMAL+VASQAVYSLHKTSTREH+KKAALR FNA SAEVLCE
Sbjct: 118 VVMNPPFGTRRNGADMEFLSMALQVASQAVYSLHKTSTREHIKKAALRGFNAISAEVLCE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVP 208
           LRY++P+ YK HKKKE+DIAVDLWRFVP
Sbjct: 178 LRYNLPRTYKLHKKKEIDIAVDLWRFVP 205

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688121|ref|NP_194612.2| putative methylase [Arabidopsis thaliana] gi|29028816|gb|AAO64787.1| At4g28830 [Arabidopsis thaliana] gi|110743221|dbj|BAE99501.1| hypothetical protein [Arabidopsis thaliana] gi|332660151|gb|AEE85551.1| putative methylase [Arabidopsis thaliana]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/211 (76%), Positives = 185/211 (87%), Gaps = 3/211 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LGDLEQFSNPKVE EQYPTGPHIASRML+TAENS+GD+++KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGDLEQFSNPKVEFEQYPTGPHIASRMLFTAENSYGDITDKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TL AAA LL A  VI  DID +SLE A+ NA +LE++IDFVQCDI  LE +      VDT
Sbjct: 61  TLSAAAALLDAASVIGFDIDPESLETATLNAEELEVEIDFVQCDITKLELKGLI---VDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGTRKKG DM+FLS A+KVAS+AVYSLHKTSTREH+K+AALRDFNA SAEV+CE
Sbjct: 118 VVMNPPFGTRKKGADMEFLSAAMKVASKAVYSLHKTSTREHIKRAALRDFNAKSAEVICE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPKRN 211
           LRYD+P+LYKFHK+KEVDIAVDLWRF P++N
Sbjct: 178 LRYDLPKLYKFHKRKEVDIAVDLWRFEPRQN 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115466582|ref|NP_001056890.1| Os06g0162600 [Oryza sativa Japonica Group] gi|55296080|dbj|BAD67642.1| putative early nodule-specific-like protein ENOD8 [Oryza sativa Japonica Group] gi|113594930|dbj|BAF18804.1| Os06g0162600 [Oryza sativa Japonica Group] gi|215694922|dbj|BAG90113.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197644|gb|EEC80071.1| hypothetical protein OsI_21788 [Oryza sativa Indica Group]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/209 (73%), Positives = 178/209 (85%), Gaps = 3/209 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LGDL+QF+ PKVELEQY TGPHIASRMLYTAENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGDLQQFTAPKVELEQYATGPHIASRMLYTAENSFDDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TL  A++LL A+ V+ IDID  SLELA ENAADLELDID +QCDI+NL  R      VDT
Sbjct: 61  TLSVASSLLDAEHVVGIDIDPQSLELAQENAADLELDIDLIQCDIKNLNLRGLL---VDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGT +KG DM+F+SM +KVA++AVYSLHKTSTREH+KK ALR+ NA SAEVLCE
Sbjct: 118 VVMNPPFGTSRKGADMEFISMGMKVATRAVYSLHKTSTREHIKKVALRNCNAISAEVLCE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPK 209
           LRY++P+ YKFHK+ EVDIAVD WRFVP+
Sbjct: 178 LRYNLPRTYKFHKQNEVDIAVDFWRFVPR 206

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222635010|gb|EEE65142.1| hypothetical protein OsJ_20224 [Oryza sativa Japonica Group]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 154/209 (73%), Positives = 178/209 (85%), Gaps = 3/209 (1%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
           MKLKQLE +LGDL+QF+ PKVELEQY TGPHIASRMLYTAENSF D++ KVVADFGCGCG
Sbjct: 1   MKLKQLEGLLGDLQQFTAPKVELEQYATGPHIASRMLYTAENSFDDITGKVVADFGCGCG 60

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
           TL  A++LL A+ V+ IDID  SLELA ENAADLELDID +QCDI+NL  R      VDT
Sbjct: 61  TLSVASSLLDAEHVVGIDIDPQSLELAQENAADLELDIDLIQCDIKNLNLRGLL---VDT 117

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
           VVMNPPFGT +KG DM+F+SM +KVA++AVYSLHKTSTREH+KK ALR+ NA SAEVLCE
Sbjct: 118 VVMNPPFGTSRKGADMEFISMGMKVATRAVYSLHKTSTREHIKKVALRNCNAISAEVLCE 177

Query: 181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPK 209
           LRY++P+ YKFHK+ EVDIAVD WRFVP+
Sbjct: 178 LRYNLPRTYKFHKQNEVDIAVDFWRFVPR 206

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2117813	208	AT4G28830 [Arabidopsis thalian	0.962	1.0	0.706	3.9e-76
UNIPROTKB|F1N6B1	208	METTL5 "Uncharacterized protei	0.935	0.971	0.502	4.7e-48
ZFIN|ZDB-GENE-041010-21	207	mettl5 "methyltransferase like	0.921	0.961	0.493	4.2e-47
UNIPROTKB|F1NZ60	217	METTL5 "Uncharacterized protei	0.935	0.930	0.504	6.9e-47
UNIPROTKB|E2RR00	209	METTL5 "Uncharacterized protei	0.935	0.966	0.490	1.1e-46
MGI|MGI:1922672	209	Mettl5 "methyltransferase like	0.935	0.966	0.485	1.4e-46
RGD|1566062	209	Mettl5 "methyltransferase like	0.935	0.966	0.480	2.3e-46
UNIPROTKB|Q9NRN9	209	METTL5 "Methyltransferase-like	0.935	0.966	0.5	4.8e-46
UNIPROTKB|I3LFW4	209	METTL5 "Uncharacterized protei	0.935	0.966	0.466	3.1e-44
UNIPROTKB|B8ZZC8	244	METTL5 "Methyltransferase-like	0.912	0.807	0.477	3.5e-43

TAIR|locus:2117813 AT4G28830 [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 149/211 (70%), Positives = 172/211 (81%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             MKLKQLE +LGDLEQFSNPKVE EQYPTGPHIASRML+TAENS+GD+++KVVADF     
Sbjct:     1 MKLKQLEGLLGDLEQFSNPKVEFEQYPTGPHIASRMLFTAENSYGDITDKVVADFGCGCG 60

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
                          VI  DID +SLE A+ NA +LE++IDFVQCDI  LE +   V   DT
Sbjct:    61 TLSAAAALLDAASVIGFDIDPESLETATLNAEELEVEIDFVQCDITKLELKGLIV---DT 117

Query:   121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
             VVMNPPFGTRKKG DM+FLS A+KVAS+AVYSLHKTSTREH+K+AALRDFNA SAEV+CE
Sbjct:   118 VVMNPPFGTRKKGADMEFLSAAMKVASKAVYSLHKTSTREHIKRAALRDFNAKSAEVICE 177

Query:   181 LRYDVPQLYKFHKKKEVDIAVDLWRFVPKRN 211
             LRYD+P+LYKFHK+KEVDIAVDLWRF P++N
Sbjct:   178 LRYDLPKLYKFHKRKEVDIAVDLWRFEPRQN 208

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1N6B1 METTL5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 104/207 (50%), Positives = 134/207 (64%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L  ++ F  PKV LEQYPT PHIA+ MLYT  N++GD+ NKVVAD      
Sbjct:     4 LKLKELESRLQQVDGFEKPKVLLEQYPTRPHIAACMLYTIHNTYGDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID D+LE+ + N  + EL ++D VQCD+ +L  R+      D
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNVDVVQCDVCSLSNRMSK--SFD 121

Query:   120 TVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLC 179
             TV+MNPPFGT  KG DM FL  AL++A  AVYSLHK+STREH++K A  ++     +++ 
Sbjct:   122 TVIMNPPFGTNNKGTDMAFLKTALEMARTAVYSLHKSSTREHIQKKAA-EWKVK-IDIIA 179

Query:   180 ELRYDVPQLYKFHKKKEVDIAVDLWRF 206
             ELRYD+P  YKFHKKK VDI VDL RF
Sbjct:   180 ELRYDLPASYKFHKKKSVDIEVDLIRF 206

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-041010-21 mettl5 "methyltransferase like 5" [Danio rerio (taxid:7955)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 106/215 (49%), Positives = 133/215 (61%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             MKLK+LES L  ++ F  PK+ LEQYPT PHIA  MLYT  N+F D+ NK+VAD      
Sbjct:     1 MKLKELESCLQQVDGFEEPKILLEQYPTSPHIAGCMLYTIHNTFDDIQNKLVADLGCGCG 60

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGH-- 117
                           +  DID D+L++   N  + EL +ID VQCD       VCS+G   
Sbjct:    61 VLSIGAAVLDAGLCVGFDIDEDALDIFRGNVEEFELPNIDVVQCD-------VCSIGSSY 113

Query:   118 ---VDTVVMNPPFGTR-KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNAS 173
                 DTV+MNPPFGT+  +G+DM FL  A+ +A+ AVYSLHKTSTR+H++K A  D+   
Sbjct:   114 AKKFDTVIMNPPFGTKHNQGIDMQFLQTAISMATTAVYSLHKTSTRDHIQKKA-NDWKVK 172

Query:   174 SAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVP 208
               EV+ ELRYD+P  YKFHKKK VDI VD  RF P
Sbjct:   173 M-EVIAELRYDLPASYKFHKKKSVDIQVDFIRFTP 206

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1NZ60 METTL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 105/208 (50%), Positives = 133/208 (63%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L  ++ F +PKV LEQYPT PHIA+ MLYT  N+F D+ NK VAD      
Sbjct:     9 LKLKELESCLQQVDTFESPKVLLEQYPTRPHIAACMLYTIHNTFDDIENKTVADLGCGCG 68

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID+++LE+ + N  D EL ++D VQCD+ +L   +      D
Sbjct:    69 MLSIGSAMLGAGLCVGFDIDAEALEIFNSNLEDFELTNVDVVQCDVSSLPDSMSET--FD 126

Query:   120 TVVMNPPFGTR-KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
             TV+MNPPFGT+  KG+DM FL  AL++A  AVYSLHKTSTR+HV+K A  D      EV+
Sbjct:   127 TVIMNPPFGTKHNKGMDMIFLKTALQMAKTAVYSLHKTSTRQHVQKKA--DEWKVKMEVI 184

Query:   179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
              ELRYD+P  YKFHKKK VDI VD  RF
Sbjct:   185 AELRYDLPASYKFHKKKSVDIEVDFIRF 212

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2RR00 METTL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 102/208 (49%), Positives = 135/208 (64%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 LKLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID D+LE+ + N  + EL ++D VQCD+R+L  R+      D
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEVFNRNVEEFELTNVDMVQCDVRSLSNRMSK--SFD 121

Query:   120 TVVMNPPFGTRK-KGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
             TV+MNPPFGT+  KG DM FL  AL++A  AVYSLHK+STR+H++K A  ++     +++
Sbjct:   122 TVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTRDHIQKKAT-EWKIK-IDII 179

Query:   179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
              ELRYD+P  YKFHKKK VDI VDL RF
Sbjct:   180 AELRYDLPASYKFHKKKSVDIEVDLIRF 207

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1922672 Mettl5 "methyltransferase like 5" [Mus musculus (taxid:10090)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 101/208 (48%), Positives = 135/208 (64%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L +++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NK VAD      
Sbjct:     4 LKLKELESRLQEVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKAVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID D+LE+ ++N  + EL ++D +QCD+ +L  R+  +   D
Sbjct:    64 VLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVYSLSNRMSKL--FD 121

Query:   120 TVVMNPPFGTRK-KGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
             TV+MNPPFGT+  KG DM FL  AL +A  AVYSLHK+STREH++K A  ++     E++
Sbjct:   122 TVIMNPPFGTKNNKGTDMAFLKTALGMARTAVYSLHKSSTREHIQKKAA-EWKVK-IEII 179

Query:   179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
              ELRYD+P LY FHKKK VDI VDL RF
Sbjct:   180 AELRYDLPALYNFHKKKSVDIEVDLIRF 207

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1566062 Mettl5 "methyltransferase like 5" [Rattus norvegicus (taxid:10116)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 100/208 (48%), Positives = 136/208 (65%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             +KLK+LES L +++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ +K VAD      
Sbjct:     4 LKLKELESRLQEVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIESKAVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID D+LE+ ++N  + EL ++D +QCD+ +L  R+  +   D
Sbjct:    64 VLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVYSLSSRMSKL--FD 121

Query:   120 TVVMNPPFGTRK-KGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
             TV+MNPPFGT+  KG DM FL  AL +A  AVYSLHK+STREH++K A  ++   + E++
Sbjct:   122 TVIMNPPFGTKNNKGTDMAFLKTALGMARTAVYSLHKSSTREHIQKKAA-EWKVKT-EII 179

Query:   179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
              ELRYD+P LY FHKKK VDI VDL RF
Sbjct:   180 AELRYDLPALYNFHKKKSVDIEVDLIRF 207

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q9NRN9 METTL5 "Methyltransferase-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 104/208 (50%), Positives = 134/208 (64%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID D+LE+ + NA + EL +ID VQCD+  L  R+      D
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDVCLLSNRMSK--SFD 121

Query:   120 TVVMNPPFGTRK-KGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
             TV+MNPPFGT+  KG DM FL  AL++A  AVYSLHK+STREHV+K A  ++     +++
Sbjct:   122 TVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAA-EWKIK-IDII 179

Query:   179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
              ELRYD+P  YKFHKKK VDI VDL RF
Sbjct:   180 AELRYDLPASYKFHKKKSVDIEVDLIRF 207

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LFW4 METTL5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 97/208 (46%), Positives = 133/208 (63%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NK+VAD      
Sbjct:     4 LRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKMVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID D+LE+ + N  + EL ++D VQCD+ +L  ++      D
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNVEEFELTNVDMVQCDVCSLSNKMSK--SFD 121

Query:   120 TVVMNPPFGTRK-KGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
             TV+MNPPFGT+  KG D+ FL  AL++A  AVYSLHK+STREH++K A  ++     +++
Sbjct:   122 TVIMNPPFGTKNNKGTDIAFLKTALEMARTAVYSLHKSSTREHIQKKAA-EWKIK-IDII 179

Query:   179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
              ELRYD+P  Y FHKKK VDI VDL RF
Sbjct:   180 AELRYDLPASYTFHKKKSVDIEVDLIRF 207

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|B8ZZC8 METTL5 "Methyltransferase-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 97/203 (47%), Positives = 129/203 (63%)

Query:     1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXX 60
             ++LK+LES L  ++ F  PK+ LEQYPT PHIA+ MLYT  N++ D+ NKVVAD      
Sbjct:     4 VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63

Query:    61 XXXXXXXXXXXDQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVD 119
                           +  DID D+LE+ + NA + EL +ID VQCD+  L  R+      D
Sbjct:    64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDVCLLSNRMSK--SFD 121

Query:   120 TVVMNPPFGTRK-KGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVL 178
             TV+MNPPFGT+  KG DM FL  AL++A  AVYSLHK+STREHV+K A  ++     +++
Sbjct:   122 TVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAA-EWKIK-IDII 179

Query:   179 CELRYDVPQLYKFHKKKEVDIAV 201
              ELRYD+P  YKFHKKK V + +
Sbjct:   180 AELRYDLPASYKFHKKKSVSLLI 202

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q57732	Y284_METJA	No assigned EC number	0.3791	0.9212	0.9086	yes	no
Q9NRN9	METL5_HUMAN	2, ., 1, ., 1, ., -	0.5432	0.9351	0.9665	yes	no
Q8K1A0	METL5_MOUSE	2, ., 1, ., 1, ., -	0.5336	0.9351	0.9665	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVIII2468	hypothetical protein (213 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0016041401	SubName- Full=Putative uncharacterized protein; (199 aa)	•								0.638
	fgenesh4_pg.C_LG_XIX000474	hypothetical protein (428 aa)	•			•					0.544
	gw1.8353.1.1	Predicted protein (636 aa)	•								0.488

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	2e-59
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-12
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	5e-12
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	4e-11
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	6e-11
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	1e-10
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	3e-10
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	8e-10
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	2e-09
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	2e-09
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	3e-09
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	5e-09
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	6e-09
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-09
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	1e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-08
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	1e-07
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	3e-07
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	7e-06
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	8e-06
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	9e-06
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-05
TIGR00536	284	TIGR00536, hemK_fam, HemK family putative methylas	2e-05
COG0116	381	COG0116, COG0116, Predicted N6-adenine-specific DN	4e-05
PRK11783	702	PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransfera	4e-05
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	5e-05
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	6e-05
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	9e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	1e-04
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	1e-04
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	1e-04
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-04
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-04
PRK14966	423	PRK14966, PRK14966, unknown domain/N5-glutamine S-	4e-04
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	4e-04
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-04
TIGR03704	251	TIGR03704, PrmC_rel_meth, putative protein-(glutam	5e-04
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	5e-04
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	6e-04
PRK07580	230	PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr	7e-04
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	7e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	7e-04
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	0.001
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	0.001
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	0.001
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	0.001
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	0.002
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	0.002
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	0.002
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	0.002
pfam09445	165	pfam09445, Methyltransf_15, RNA cap guanine-N2 met	0.003
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	0.003
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	0.004
COG1041	347	COG1041, COG1041, Predicted DNA modification methy	0.004

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score =  185 bits (471), Expect = 2e-59
 Identities = 83/203 (40%), Positives = 122/203 (60%), Gaps = 10/203 (4%)

Query: 4   KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG 63
           K+LE +L  L+ F NPK+ LEQY T   +A+ +L+ A    GD+  K V D G G G L 
Sbjct: 2   KELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGILA 60

Query: 64  AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123
             A LLGA +V+A+DID ++LE+A  NA +L  D++FV  D+ +        G  DTV+M
Sbjct: 61  IGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR------GKFDTVIM 114

Query: 124 NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY 183
           NPPFG++++  D  FL  AL+  S  VYS+HK  +R+ V+K A  D   +   +    R+
Sbjct: 115 NPPFGSQRRHADRPFLLKALE-ISDVVYSIHKAGSRDFVEKFA-ADLGGTVTHIE-RARF 171

Query: 184 DVPQLYKFHKKKEVDIAVDLWRF 206
            +P+ Y FH+K+   I VD++RF
Sbjct: 172 PIPRTYPFHRKRVRRIEVDIFRF 194

Length = 198

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEW 110
           V D GCG G L  A       +V  +DI   +LELA + AA L  D ++ ++ D    E 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAE--EL 59

Query: 111 RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV 145
              +    D ++ +PP     + +   FL  A ++
Sbjct: 60  PPEADESFDVIISDPPLHHLVEDLA-RFLEEARRL 93

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 60.1 bits (146), Expect = 5e-12
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 52  VADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASEN--AADLELDIDFVQCDIRNL 108
           V D G G G    AA   G D +V+ +++D ++  LA      A L   +  V  D R L
Sbjct: 4   VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63

Query: 109 EWRVCSVGHVDTVVMNPPFGTR 130
                  G  D V+ NPP+G R
Sbjct: 64  LEL--PDGSFDLVLGNPPYGPR 83

This family contains methyltransferase domains. Length = 117

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQ 102
            +  K V D GCG G L  AA  LGA +V+A+DID  ++E A ENA    +EL++   Q
Sbjct: 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ 175

Length = 250

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVI-AIDIDSDSLELASENAADLELD-IDFVQCDIR 106
              V D GCG G LGAA      D  +  +DI++ +LE A  N A   L+  +    D+ 
Sbjct: 32  GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91

Query: 107 -NLEWRVCSVGHVDTVVMNPPF 127
             +E      G  D ++ NPPF
Sbjct: 92  SAVE-----PGKFDLIISNPPF 108

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASEN--AADLELDIDFVQCD 104
               + D G G G LG   A      +++ ++I  ++ E+A  N     LE  I  ++ D
Sbjct: 44  KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEAD 103

Query: 105 IRNLEWRVCSVGHVDTVVMNPPF 127
           I+    +       D ++ NPP+
Sbjct: 104 IKEF-LKALVFASFDLIICNPPY 125

Length = 248

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           + D GCG G +  A    G   V  +DI  ++LELA E   D    + FV  D R+L   
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLP-- 58

Query: 112 VCSVGHVDTVVM 123
               G  D V+ 
Sbjct: 59  -FEEGSFDLVIC 69

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 56.7 bits (138), Expect = 8e-10
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 39  TAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAAD-LEL 96
            A  +        V D G G G +  A A      +V A+DI  ++L +A  NA   L  
Sbjct: 99  WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGA 158

Query: 97  DIDFVQCDI-RNLEWRVCSVGHVDTVVMNPP 126
            ++F+Q D    L       G  D +V NPP
Sbjct: 159 RVEFLQGDWFEPLPG-----GRFDLIVSNPP 184

Length = 275

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 49  NKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIR 106
              V D G G G +  A A      +V A+DI  ++L +A +NAA L LD ++F+Q D  
Sbjct: 88  PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVEFLQSDWF 147

Query: 107 -NLEWRVCSVGHVDTVVMNPP 126
             L       G  D +V NPP
Sbjct: 148 EPLPG-----GKFDLIVSNPP 163

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 50  KVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN 107
           K + D G G G +  A A      +VIA+DI  D+L LA ENA    L  +  VQ D   
Sbjct: 112 KRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSD--- 168

Query: 108 LEWRVCSVGHVDTVVMNPPF 127
                   G  D +V NPP+
Sbjct: 169 --LFEPLRGKFDLIVSNPPY 186

Length = 280

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSLELA 87
           P +A  M+  A    GD     + D  CG GT+   A L+GA+   +   DID   ++ A
Sbjct: 14  PTLARAMVNLAGWKPGDP----LLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGA 69

Query: 88  SENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
             NA  A +   I+FVQ D   L       G VD +V NPP+G R
Sbjct: 70  RINAENAGVGDKIEFVQADAAKLPLLN---GSVDAIVTNPPYGIR 111

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 52  VADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           V D GCG G LG          ++  +D+++ ++E A +N A   ++   V         
Sbjct: 162 VLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221

Query: 111 RVCSVGHVDTVVMNPPF 127
                G  D ++ NPPF
Sbjct: 222 ----EGKFDLIISNPPF 234

Length = 300

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 54.5 bits (131), Expect = 6e-09
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 28  TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
           TG H  + +         D+ +K V D GCG G L  AA  LGA +V+ IDID  ++E A
Sbjct: 140 TGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESA 198

Query: 88  SENA 91
            +NA
Sbjct: 199 RKNA 202

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGAD-QVIAIDIDSDSLELASENAADLELD-IDFVQCD 104
           S   V D GCG G L    A  LG   +V+ IDI  +++E A ENA  L  + ++F+Q D
Sbjct: 3   SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGD 62

Query: 105 IRNLEWRVCSVGHVDTVVMNPP 126
           I  L          D V+ N  
Sbjct: 63  IEELPQLQLEDNSFDVVISNEV 84

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 28  TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
           TG H  + +   A         K V D GCG G L  AA  LGA +V+ +DID  ++E A
Sbjct: 143 TGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAA 201

Query: 88  SENAA 92
            ENA 
Sbjct: 202 RENAR 206

Length = 300

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 48  SNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAA-DLELDIDFVQCDI 105
               V D GCG G+L      L    +V  +D+  + LELA ENA   L   I FVQ D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Query: 106 RN 107
            +
Sbjct: 61  PD 62

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92
           V D GCG G L  AA  LGA +V+ +DID  ++  A ENA 
Sbjct: 164 VLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAE 204

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 22/101 (21%)

Query: 40  AENSF------GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93
           AE+SF       D     V + G G G +   A   G   V+ +DI+  ++E A  NA  
Sbjct: 9   AEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKK-VVGVDINPYAVECAKCNAKL 67

Query: 94  LEL---DIDFVQCD----IRNLEWRVCSVGHVDTVVMNPPF 127
             +    ++ ++ D     R            D ++ NPP+
Sbjct: 68  NNIRNNGVEVIRSDLFEPFRG--------DKFDVILFNPPY 100

Length = 188

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD-IRNLEW 110
           V D   G G L  AA   GA  V A+DI   ++  A  NA    +D+D  + D  R +E+
Sbjct: 40  VLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEF 99

Query: 111 RVCSVGHVDTVVMNPPF 127
           R       D VV NPP+
Sbjct: 100 R-----PFDVVVSNPPY 111

Length = 223

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 54  DFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV 112
           D GCG GTL  A    L   +   +DI   +LE A+E  A L L  D V+  +  L+   
Sbjct: 2   DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLL-DAVRVRLDVLDAID 60

Query: 113 CSVGHVDTVVMN 124
              G  D VV +
Sbjct: 61  LDPGSFDVVVAS 72

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 32  IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASEN 90
           +A ++  TA         + V D  CG GT G   A      +V  ++I  +++E A EN
Sbjct: 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQEN 334

Query: 91  AADLELDIDFVQCDIRNLEWRVCSVG----HVDTVVMNPPFGTRKKGVDMDFLSMALK 144
           AA   +D       I                 D VV++PP    + G D + L    K
Sbjct: 335 AAANGIDNVEF---IAGDAEEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQLAK 385

Length = 432

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 45  GDVSNKVVADFGCG-CGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           GDVS K V   GCG  G +  A A   GA  VIA D +   LELA +  AD+ ++  
Sbjct: 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR 216

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 54  DFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW 110
           D G G G +  A      + +VIA+DI  D+L +A ENA   +L   ++F+Q ++    +
Sbjct: 120 DLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL----F 175

Query: 111 RVCSVGHVDTVVMNPPF 127
              +   +D +V NPP+
Sbjct: 176 EPLAGQKIDIIVSNPPY 192

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284

>gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 64  AAATLLGADQVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTV 121
            A        +   DID   +E A  NA  A +   I+F Q D  +L+  +   G    V
Sbjct: 247 RARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYG---VV 303

Query: 122 VMNPPFGTR 130
           + NPP+G R
Sbjct: 304 ISNPPYGER 312

Length = 381

>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 78  DIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
           DID   ++ A +NA  A +   I F   D+ +L+      G    V+ NPP+G R
Sbjct: 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLK-NPLPKGPTGLVISNPPYGER 316

Length = 702

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD 97
             + D G G G++     L G + +VIAI+ D ++LEL   NAA   +D
Sbjct: 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD 84

Length = 187

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 21/88 (23%)

Query: 60  GTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELD-IDFVQCDI---------RN 107
           G     A L GA +V ++D+   +LE A ENA    L+ D   F+  D+         R 
Sbjct: 229 GGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRG 288

Query: 108 LEWRVCSVGHVDTVVMNPP-FGTRKKGV 134
            ++        D ++++PP F   KK  
Sbjct: 289 EKF--------DLIILDPPSFARSKKQE 308

Length = 393

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV 112
            G G LG    AAA L GA +VI ID   + LELA E  AD  +DID +    R    R 
Sbjct: 184 QGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRD 243

Query: 113 CSVGHVDTVVM 123
            + G    VV+
Sbjct: 244 ITGGRGADVVI 254

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 41.8 bits (95), Expect = 1e-04
 Identities = 32/124 (25%), Positives = 41/124 (33%), Gaps = 2/124 (1%)

Query: 49  NKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106
              V D GCG G L   A L G    V+ +D+  + L LA   A    L  +DFV  D  
Sbjct: 49  GLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADAL 108

Query: 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA 166
                       D V+             +  L   LK   + V S          + AA
Sbjct: 109 GGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAA 168

Query: 167 LRDF 170
           L  F
Sbjct: 169 LLGF 172

Length = 257

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105
           D+    V D GCG G L      LGA  V  ID     +E+A  +A +  ++ID+ Q  +
Sbjct: 57  DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATV 115

Query: 106 RNLE 109
            +L 
Sbjct: 116 EDLA 119

Length = 243

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI- 105
           V  K V D G G G +  AA   GA +V+A DID    +    NAA   + I F   D+ 
Sbjct: 78  VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI 137

Query: 106 -RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKK 164
                + +   G    +  N     R     + +    L  A  AV  L     R ++ K
Sbjct: 138 GSPPAFDLLLAG---DLFYNHTEADRL----IPWK-DRLAEAGAAV--LVGDPGRAYLPK 187

Query: 165 AALRDF 170
             L   
Sbjct: 188 KRLEFL 193

Length = 218

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 37  LYTAENSFGDVSNKVVADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE 89
           + TA+   GD     VA FG G   L A   A   GA ++IA+DI+ + LELA +
Sbjct: 178 VNTAKVEPGDT----VAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228

Length = 366

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 54  DFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           D GCG G L  A    G  +V  +D+  + L LA +          FV  D  +L
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-----APRKFVVGDAEDL 51

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVI-AIDIDSDSLELASENAADLELDIDFVQCDIRN 107
           N  V D G G G +     L   D  + A DI   +LE A +NAADL   ++F      +
Sbjct: 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD 311

Query: 108 LEWRVCSVGHVDTVVMNPPF 127
            +  + S G  D +V NPP+
Sbjct: 312 TD--MPSEGKWDIIVSNPPY 329

Length = 423

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 35  RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94
           R+ Y  E++ G +  K V D GCG G L  +   LGAD V  ID   +++E+A  +A + 
Sbjct: 36  RLNYIREHA-GGLFGKRVLDVGCGGGILSESMARLGAD-VTGIDASEENIEVARLHALES 93

Query: 95  ELDIDFVQCDIRNL 108
            L ID+ Q     L
Sbjct: 94  GLKIDYRQTTAEEL 107

Length = 233

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 51  VVADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
            VA +GCG   L AA  A LLGA++VIAID   + LE+A  +    E  I+F + D
Sbjct: 187 TVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH-LGAET-INFEEVD 240

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 16/84 (19%)

Query: 51  VVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAAD-----LELDI-DFVQC 103
           VV D  CG G +GAA A  L   ++ A DID  ++  A  N AD      E D+ D +  
Sbjct: 89  VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPT 148

Query: 104 DIRNLEWRVCSVGHVDTVVMNPPF 127
            +R         G VD +  N P+
Sbjct: 149 ALR---------GRVDILAANAPY 163

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 57  CGCGTLGA----AATLLGADQVIAIDIDSDSLELASENAADLELD 97
            G GT+G        +LGA +VIA+DID + L +A E  AD  ++
Sbjct: 166 IGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTIN 210

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 17/94 (18%)

Query: 20  KVELEQYPTGPHIASRMLYTAENS---FGDVSNKVVADFGCG----CGTLGAAATLLGAD 72
            +  EQ    P + S   + AE +    GD     VA FG G        GA   L GA 
Sbjct: 139 GLTDEQAVMLPDMMSTGFHGAELANIKLGDT----VAVFGIGPVGLMAVAGAR--LRGAG 192

Query: 73  QVIAIDIDSDSLELASENAADLELDI-DFVQCDI 105
           ++IA+    + +ELA E  A    DI D+   D+
Sbjct: 193 RIIAVGSRPNRVELAKEYGAT---DIVDYKNGDV 223

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQ 102
           GD++   + D GCG G+L       GA +V+A DI    +E A E A +  L   I F  
Sbjct: 60  GDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEV 118

Query: 103 CDIRNLEWRVCSVGHVDTVV 122
            D+ +L       G  DTVV
Sbjct: 119 GDLESLL------GRFDTVV 132

Length = 230

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107
           G G +G    A A LLGA ++IA+D + + L+LA E  A     I+    DI  
Sbjct: 175 GAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDI--INPKNGDIVE 226

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 49 NKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELD 97
            V+ D G G G++   AA L+   +V AI+ + ++L+L   N     + 
Sbjct: 20 GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVS 69

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 23  LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG----AAATLLGADQVIAID 78
           +E      H   R    A   F DV   V+A    G G LG     AA L    ++I +D
Sbjct: 157 IEPLACALHAVDR----ANIKFDDVV--VLA----GAGPLGLGMIGAARLKNPKKLIVLD 206

Query: 79  IDSDSLELASENAADLELDI 98
           +  + L LA +  AD+ L+ 
Sbjct: 207 LKDERLALARKFGADVVLNP 226

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 5/40 (12%)

Query: 58  GCGTLGAAATL----LGADQVIAIDIDSDSLELASENAAD 93
           GCG +G +A +    LGA +VIA+DID D LELA E  A 
Sbjct: 173 GCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAV 211

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASE 89
           G G +G    A A LLGA  VI +D   + LELA E
Sbjct: 176 GAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211

Length = 350

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 52  VADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           V D GCG G      A  +G + +V+ ID     L LA E AA L  +++FV+ D   L 
Sbjct: 23  VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82

Query: 110 WRVCSV 115
           +   S 
Sbjct: 83  FPDGSF 88

Length = 241

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 39  TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-DLELD 97
           T   +   +    V D GCG G L      LGA  V  ID   +++E+A  +A  D  L 
Sbjct: 36  TIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK 94

Query: 98  IDFVQCDIRNLE 109
           I++    + +L 
Sbjct: 95  IEYRCTSVEDLA 106

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELD 97
           G G LG      A  +GA  VIA+DI  + LELA E  AD  L+
Sbjct: 173 GLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLN 215

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
            G G +G    A A   GA +V+  DID   LE A E  A   +++ 
Sbjct: 169 FGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVR 215

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
              V D   G G LG  A   GA +V+ ++ D  ++++  EN   L L+ +        L
Sbjct: 44  GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103

Query: 109 EW--RVCSVGHVDTVVMNPPFG 128
               ++ +    D V ++PP+ 
Sbjct: 104 RALKQLGTREPFDLVFLDPPYA 125

Length = 187

>gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 50  KVVADFGCGCG--TLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQCDI 105
           +++ D  CG G  T+  A        VI IDI+ + L  A  NA    +   I F+  D 
Sbjct: 2   RIILDVFCGAGGNTIQFANVF---CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDW 58

Query: 106 RNLEWRVCSVG--HVDTVVMNPPFG 128
             L       G    D V ++PP+G
Sbjct: 59  FEL-LAKLKFGKIPYDCVFLSPPWG 82

RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine. Length = 165

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 14/95 (14%)

Query: 40  AENSF------GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93
           AE+S        ++    V + G G G +       G   ++  DI+  +++   ENA  
Sbjct: 5   AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKL 63

Query: 94  LELDIDFVQCDI-RNLEWRVCSVGHVDTVVMNPPF 127
             + +D V  D+ + +       G  D ++ NPP+
Sbjct: 64  NNVGLDVVMTDLFKGVR------GKFDVILFNPPY 92

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 52  VADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE 89
           +A FG G   L A  AA + G   +IA+DI    LELA E
Sbjct: 190 IAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair]

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN-AADLELDIDFVQ-CDIR 106
            ++V D  CG G +   A L+GA +VI  DID   +  A  N       D   ++  D  
Sbjct: 198 GELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256

Query: 107 NLEWRVCSVGHVDTVVMNPPFGTRKK 132
           NL  R  SV   D +  +PP+G   K
Sbjct: 257 NLPLRDNSV---DAIATDPPYGRSTK 279

Length = 347

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	100.0
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.97
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.76
COG4123	248	Predicted O-methyltransferase [General function pr	99.75
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.75
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.75
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.73
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.72
COG2890	280	HemK Methylase of polypeptide chain release factor	99.72
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.72
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.71
PHA03412	241	putative methyltransferase; Provisional	99.7
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.7
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.7
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.7
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.68
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.68
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.67
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.67
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.67
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.66
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.66
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.66
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.65
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.65
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.65
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.63
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.63
PRK14967	223	putative methyltransferase; Provisional	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.62
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.62
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.61
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.61
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.61
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.58
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.57
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.57
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.57
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.56
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.55
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.55
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.54
PHA03411	279	putative methyltransferase; Provisional	99.54
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.54
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.53
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.53
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.53
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.53
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.53
KOG1271	227	consensus Methyltransferases [General function pre	99.53
PRK11207	197	tellurite resistance protein TehB; Provisional	99.52
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.51
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.5
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.49
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.49
PRK14968	188	putative methyltransferase; Provisional	99.49
PLN02672	1082	methionine S-methyltransferase	99.49
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.48
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.48
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.47
PLN02244	340	tocopherol O-methyltransferase	99.47
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.46
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.46
KOG2904	328	consensus Predicted methyltransferase [General fun	99.46
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.46
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.45
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.44
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.44
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.43
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.43
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.43
PRK12335	287	tellurite resistance protein TehB; Provisional	99.42
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.42
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.42
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.42
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.42
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.42
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.41
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.41
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.41
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.41
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.4
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.4
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.4
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.4
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.39
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.39
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.38
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.38
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.38
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.38
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.37
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.37
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.37
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.36
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.36
PRK05785	226	hypothetical protein; Provisional	99.35
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.35
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.35
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.35
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.35
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.34
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.34
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.34
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.33
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.33
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.33
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.33
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	99.32
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.32
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.31
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.31
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.3
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.29
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.29
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.29
PRK07402	196	precorrin-6B methylase; Provisional	99.28
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.27
PLN02336	475	phosphoethanolamine N-methyltransferase	99.27
PRK06922	677	hypothetical protein; Provisional	99.27
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.27
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.26
PRK06202	232	hypothetical protein; Provisional	99.26
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.26
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.25
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.25
PLN02490	340	MPBQ/MSBQ methyltransferase	99.24
COG2520	341	Predicted methyltransferase [General function pred	99.23
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.23
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.23
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.23
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.23
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.22
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.22
PRK04266	226	fibrillarin; Provisional	99.22
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.22
KOG2730	263	consensus Methylase [General function prediction o	99.21
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.21
PLN02476	278	O-methyltransferase	99.21
PRK00811	283	spermidine synthase; Provisional	99.2
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.19
PRK08317	241	hypothetical protein; Provisional	99.18
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	99.16
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.16
COG4122	219	Predicted O-methyltransferase [General function pr	99.15
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.15
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.15
PLN02336	475	phosphoethanolamine N-methyltransferase	99.14
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.14
PLN03075	296	nicotianamine synthase; Provisional	99.14
PRK10742	250	putative methyltransferase; Provisional	99.13
PRK04457	262	spermidine synthase; Provisional	99.13
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.11
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.1
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.09
PRK04148	134	hypothetical protein; Provisional	99.09
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.08
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.07
COG3897	218	Predicted methyltransferase [General function pred	99.07
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.05
TIGR03438	301	probable methyltransferase. This model represents	99.05
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.04
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.04
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.03
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.03
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.02
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.02
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.01
PLN02366	308	spermidine synthase	99.01
COG2521	287	Predicted archaeal methyltransferase [General func	99.0
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.95
PRK03612	521	spermidine synthase; Provisional	98.95
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.94
PTZ00146	293	fibrillarin; Provisional	98.94
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.92
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.91
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.91
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.9
PRK01581	374	speE spermidine synthase; Validated	98.9
KOG4300	252	consensus Predicted methyltransferase [General fun	98.9
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.89
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.89
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.87
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.87
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.86
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.85
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.84
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.83
TIGR00438	188	rrmJ cell division protein FtsJ.	98.83
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.82
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.81
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.78
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.74
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.74
COG4076	252	Predicted RNA methylase [General function predicti	98.71
PLN02823	336	spermine synthase	98.66
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.65
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.64
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.61
COG0286	489	HsdM Type I restriction-modification system methyl	98.6
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.57
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.56
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.54
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.53
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.45
KOG2899	288	consensus Predicted methyltransferase [General fun	98.44
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.43
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.38
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.38
COG3129	292	Predicted SAM-dependent methyltransferase [General	98.36
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.34
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	98.33
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.33
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.32
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.27
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.27
PRK00536	262	speE spermidine synthase; Provisional	98.27
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.26
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.25
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.24
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.2
KOG3010	261	consensus Methyltransferase [General function pred	98.2
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.18
PF13679	141	Methyltransf_32: Methyltransferase domain	98.18
KOG2361	264	consensus Predicted methyltransferase [General fun	98.16
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.13
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	98.11
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.09
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	98.04
PHA01634	156	hypothetical protein	98.03
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.02
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.99
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.88
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.84
KOG2940	325	consensus Predicted methyltransferase [General fun	97.83
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.78
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.76
PRK11524	284	putative methyltransferase; Provisional	97.75
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.75
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.69
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.69
KOG1227	351	consensus Putative methyltransferase [General func	97.64
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.61
PRK13699	227	putative methylase; Provisional	97.6
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.6
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.59
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.58
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.56
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.52
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.52
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.51
TIGR00497	501	hsdM type I restriction system adenine methylase (	97.5
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.46
COG1568	354	Predicted methyltransferases [General function pre	97.42
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.4
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.39
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.36
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.31
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.3
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.26
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.18
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.17
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.13
KOG2078	495	consensus tRNA modification enzyme [RNA processing	97.13
PRK10458	467	DNA cytosine methylase; Provisional	97.13
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.1
KOG3115	249	consensus Methyltransferase-like protein [General	97.01
KOG2912	419	consensus Predicted DNA methylase [Function unknow	96.98
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	96.96
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.93
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.86
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.8
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.74
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.73
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.68
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.67
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.66
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.58
COG2961	279	ComJ Protein involved in catabolism of external DN	96.44
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.39
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.36
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.16
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.03
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.79
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.75
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.72
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	95.58
COG1565	370	Uncharacterized conserved protein [Function unknow	95.53
PRK11524	284	putative methyltransferase; Provisional	95.47
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.34
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.13
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.08
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.03
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	94.74
COG0863	302	DNA modification methylase [DNA replication, recom	94.72
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	94.58
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.52
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	94.36
KOG2920	282	consensus Predicted methyltransferase [General fun	94.34
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.3
KOG2360	413	consensus Proliferation-associated nucleolar prote	94.24
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	94.03
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	93.99
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.91
KOG1331	293	consensus Predicted methyltransferase [General fun	93.78
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	93.61
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	93.57
PTZ00357	1072	methyltransferase; Provisional	92.92
PRK05867	253	short chain dehydrogenase; Provisional	92.16
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.37
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.22
PRK13699	227	putative methylase; Provisional	90.9
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	90.79
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	90.75
PRK06139	330	short chain dehydrogenase; Provisional	90.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.03
COG4301	321	Uncharacterized conserved protein [Function unknow	89.98
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.88
PRK12548	289	shikimate 5-dehydrogenase; Provisional	89.33
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	89.32
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.24
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	89.13
COG1743	875	Adenine-specific DNA methylase containing a Zn-rib	88.95
PRK08303	305	short chain dehydrogenase; Provisional	88.83
PRK08589	272	short chain dehydrogenase; Validated	88.3
PRK05854	313	short chain dehydrogenase; Provisional	87.89
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	87.49
PRK08339	263	short chain dehydrogenase; Provisional	87.4
TIGR01712	166	phage_N6A_met phage N-6-adenine-methyltransferase.	87.24
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.01
COG4798	238	Predicted methyltransferase [General function pred	86.95
PRK05876	275	short chain dehydrogenase; Provisional	86.88
PRK08862	227	short chain dehydrogenase; Provisional	86.78
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	86.62
PRK07062	265	short chain dehydrogenase; Provisional	86.59
PRK07791	286	short chain dehydrogenase; Provisional	86.57
PRK06720	169	hypothetical protein; Provisional	86.52
PRK08085	254	gluconate 5-dehydrogenase; Provisional	86.48
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	86.38
PRK03659	601	glutathione-regulated potassium-efflux system prot	86.24
PRK06124	256	gluconate 5-dehydrogenase; Provisional	86.17
KOG3924	419	consensus Putative protein methyltransferase invol	86.09
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	85.96
KOG0725	270	consensus Reductases with broad range of substrate	85.92
PRK06172	253	short chain dehydrogenase; Provisional	85.75
KOG3350	217	consensus Uncharacterized conserved protein [Funct	85.62
PRK07035	252	short chain dehydrogenase; Provisional	85.6
PRK06125	259	short chain dehydrogenase; Provisional	85.45
PRK07063	260	short chain dehydrogenase; Provisional	85.43
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	85.33
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	85.26
PRK09291	257	short chain dehydrogenase; Provisional	85.14
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.09
PRK06194	287	hypothetical protein; Provisional	84.99
PRK07890	258	short chain dehydrogenase; Provisional	84.91
PRK08340	259	glucose-1-dehydrogenase; Provisional	84.89
COG1255	129	Uncharacterized protein conserved in archaea [Func	84.87
PRK07677	252	short chain dehydrogenase; Provisional	84.84
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	84.74
PRK07097	265	gluconate 5-dehydrogenase; Provisional	84.41
PRK07109	334	short chain dehydrogenase; Provisional	84.4
PRK05866	293	short chain dehydrogenase; Provisional	84.22
TIGR00571	266	dam DNA adenine methylase (dam). All proteins in t	84.18
PRK06197	306	short chain dehydrogenase; Provisional	84.17
PRK07904	253	short chain dehydrogenase; Provisional	83.98
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	83.84
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	83.79
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	83.73
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	83.69
PRK07478	254	short chain dehydrogenase; Provisional	83.66
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	83.59
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	83.57
KOG2782	303	consensus Putative SAM dependent methyltransferase	83.54
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	83.38
PRK05872	296	short chain dehydrogenase; Provisional	83.22
PRK03562	621	glutathione-regulated potassium-efflux system prot	82.8
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	82.62
PRK10669	558	putative cation:proton antiport protein; Provision	82.3
PRK06196	315	oxidoreductase; Provisional	81.87
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	81.81
PRK08277	278	D-mannonate oxidoreductase; Provisional	81.73
PRK07814	263	short chain dehydrogenase; Provisional	81.7
PRK07523	255	gluconate 5-dehydrogenase; Provisional	81.64
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	81.52
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	81.42
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	81.34
COG0338	274	Dam Site-specific DNA methylase [DNA replication,	81.34
PRK05855	582	short chain dehydrogenase; Validated	81.25
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	81.17
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	81.04
PRK08213	259	gluconate 5-dehydrogenase; Provisional	80.99
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	80.78
PRK15116	268	sulfur acceptor protein CsdL; Provisional	80.61
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	80.33
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	80.23
PRK08643	256	acetoin reductase; Validated	80.09

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.2e-31  Score=195.37  Aligned_cols=196  Identities=41%  Similarity=0.711  Sum_probs=177.1

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHH
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD   82 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~   82 (216)
                      |+.|+..++.+..|.++....+||+|+.++++.++..+... .+..+++|+|+|||||.+++.++-.|+..|+|+|+|++
T Consensus         1 kk~Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~-g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~   79 (198)
T COG2263           1 KKELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLR-GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE   79 (198)
T ss_pred             CchhhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHHHc-CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence            57889999999999999999999999999999999998744 77889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHH
Q 027945           83 SLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHV  162 (216)
Q Consensus        83 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +++.++.|+...+.+++++.+|+.++..   .   +|.++.||||+...+..+.+|+..+++... .+|.+++.++++++
T Consensus        80 a~ei~r~N~~~l~g~v~f~~~dv~~~~~---~---~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~-vVYsiH~a~~~~f~  152 (198)
T COG2263          80 ALEIARANAEELLGDVEFVVADVSDFRG---K---FDTVIMNPPFGSQRRHADRPFLLKALEISD-VVYSIHKAGSRDFV  152 (198)
T ss_pred             HHHHHHHHHHhhCCceEEEEcchhhcCC---c---cceEEECCCCccccccCCHHHHHHHHHhhh-eEEEeeccccHHHH
Confidence            9999999999866689999999987644   3   999999999999999999999999999987 99999999999999


Q ss_pred             HHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEe
Q 027945          163 KKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVP  208 (216)
Q Consensus       163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (216)
                      ...+ +.++ ..........|.+|..+.+|.+....+.+.+|++.+
T Consensus       153 ~~~~-~~~G-~~v~~~~~~~~~iP~~y~fH~k~~~~I~v~i~r~~k  196 (198)
T COG2263         153 EKFA-ADLG-GTVTHIERARFPIPRTYPFHRKRVRRIEVDIFRFEK  196 (198)
T ss_pred             HHHH-HhcC-CeEEEEEEEEEecCccCchhhheeeeeeEEEEEEEe
Confidence            9988 5444 345555567789999999999999999999999975

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=5.4e-30  Score=182.24  Aligned_cols=185  Identities=58%  Similarity=0.970  Sum_probs=170.4

Q ss_pred             CchhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCC
Q 027945            1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID   80 (216)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~   80 (216)
                      |+-++++.-+.+++.|.++....+||||++++++.|+..+-.-+....+++++|+|||+|-++...+..+...|+|+|++
T Consensus         1 m~~Kel~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId   80 (185)
T KOG3420|consen    1 MRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID   80 (185)
T ss_pred             CchHHHHHHHHHhccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC
Confidence            67789999999999999999999999999999999999998888889999999999999999988887778899999999


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHH
Q 027945           81 SDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTRE  160 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  160 (216)
                      |++++.+..|+....+++++.++|..+..+..+.   ||.++.||||++...+.+.++++.+++... .+|.++++.+++
T Consensus        81 peALEIf~rNaeEfEvqidlLqcdildle~~~g~---fDtaviNppFGTk~~~aDm~fv~~al~~~~-~VySLHKtSTRe  156 (185)
T KOG3420|consen   81 PEALEIFTRNAEEFEVQIDLLQCDILDLELKGGI---FDTAVINPPFGTKKKGADMEFVSAALKVAS-AVYSLHKTSTRE  156 (185)
T ss_pred             HHHHHHHhhchHHhhhhhheeeeeccchhccCCe---EeeEEecCCCCcccccccHHHHHHHHHHHH-HHHHHhcccHHH
Confidence            9999999999999888899999999987766555   999999999999999999999999999888 999999999988


Q ss_pred             HHHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEee
Q 027945          161 HVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPK  209 (216)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (216)
                      |+                    +++|..++||+++..++-|.+|||+++
T Consensus       157 y~--------------------~kLP~~ykFHK~k~vdiaVDlirfe~r  185 (185)
T KOG3420|consen  157 YR--------------------YKLPKLYKFHKRKEVDIAVDLIRFEPR  185 (185)
T ss_pred             HH--------------------HhcchhhhhhhccccceeeeEEEeecC
Confidence            77                    347999999999999999999999863

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1.1e-17  Score=142.71  Aligned_cols=129  Identities=26%  Similarity=0.401  Sum_probs=114.8

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      |.+.+...+.|+.++..++...++.++||++||.|.+++.+|.. ..+|+|+|+++.+++.|+.|++.|+. ++++..+|
T Consensus       271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~  349 (432)
T COG2265         271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD  349 (432)
T ss_pred             eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            55678899999999998877778899999999999999999974 55999999999999999999999999 79999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR  159 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  159 (216)
                      +.++.........+|.|+.|||    +.+.+..+++.+.+..+ ..+|++|||.|.
T Consensus       350 ae~~~~~~~~~~~~d~VvvDPP----R~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl  401 (432)
T COG2265         350 AEEFTPAWWEGYKPDVVVVDPP----RAGADREVLKQLAKLKPKRIVYVSCNPATL  401 (432)
T ss_pred             HHHHhhhccccCCCCEEEECCC----CCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence            9998776521224999999999    99999999999999887 689999999983

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.75  E-value=5.7e-17  Score=127.77  Aligned_cols=131  Identities=18%  Similarity=0.283  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~  108 (216)
                      ..+.+|....   ......+|||+|||+|.+++.++++ ...+++++|+++.++++|++|++.|++  +++++++|+.++
T Consensus        31 ~DaiLL~~~~---~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~  107 (248)
T COG4123          31 TDAILLAAFA---PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF  107 (248)
T ss_pred             cHHHHHHhhc---ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHh
Confidence            3444444433   2334779999999999999999987 557999999999999999999999988  899999999998


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCC----------------CCHHHHHHHHhhcC--CcEEEEecCccHHHHHHHH
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKG----------------VDMDFLSMALKVAS--QAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~----------------~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~  166 (216)
                      .... ...+||+|+|||||+.....                ....+++.+....+  |.+++++.+.....+.+.+
T Consensus       108 ~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l  182 (248)
T COG4123         108 LKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELL  182 (248)
T ss_pred             hhcc-cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHH
Confidence            7665 22359999999999887332                22355565555554  5777777777766666665

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.75  E-value=8.4e-17  Score=121.44  Aligned_cols=159  Identities=19%  Similarity=0.288  Sum_probs=115.2

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF  100 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~  100 (216)
                      ..-+||+..+-+.+.+++...  ...+.++||+++|||.++++.+++|+.+++.+|.|..++..+++|++..+.  ++++
T Consensus        20 ~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~   97 (187)
T COG0742          20 PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARV   97 (187)
T ss_pred             CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEE
Confidence            345888877777777666431  368899999999999999999999999999999999999999999999985  7899


Q ss_pred             EEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEEE
Q 027945          101 VQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE  180 (216)
Q Consensus       101 ~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (216)
                      +..|+..+.........||+|+.||||+..   .....+. +.....                   ...|. +++..++|
T Consensus        98 ~~~da~~~L~~~~~~~~FDlVflDPPy~~~---l~~~~~~-~~~~~~-------------------~~~L~-~~~~iv~E  153 (187)
T COG0742          98 LRNDALRALKQLGTREPFDLVFLDPPYAKG---LLDKELA-LLLLEE-------------------NGWLK-PGALIVVE  153 (187)
T ss_pred             EeecHHHHHHhcCCCCcccEEEeCCCCccc---hhhHHHH-HHHHHh-------------------cCCcC-CCcEEEEE
Confidence            999998654443232349999999999833   1111111 111000                   02233 67777777


Q ss_pred             Eee-----cCCccccccc-eeeeeEEEEEEEEE
Q 027945          181 LRY-----DVPQLYKFHK-KKEVDIAVDLWRFV  207 (216)
Q Consensus       181 ~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~  207 (216)
                      +.-     ..+..|..++ ++++.+.+++|++.
T Consensus       154 ~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~~  186 (187)
T COG0742         154 HDKDVELPELPANFELHREKKYGQTKLTFYRRE  186 (187)
T ss_pred             eCCCcCccccCCCeEEEEEeecCCEEEEEEEec
Confidence            773     2356676544 66699999999874

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.75  E-value=4e-17  Score=124.75  Aligned_cols=156  Identities=17%  Similarity=0.307  Sum_probs=106.6

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF  100 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~  100 (216)
                      ...+||+..+-+.+.+.+...  ...+.++||++||||.++++..++|+.+|+.+|.|+.+++.+++|++..+.  ++++
T Consensus        19 ~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v   96 (183)
T PF03602_consen   19 DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRV   96 (183)
T ss_dssp             -TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEE
T ss_pred             CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceee
Confidence            455899988888887777654  258899999999999999999999999999999999999999999999887  5899


Q ss_pred             EEcccccccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEE
Q 027945          101 VQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLC  179 (216)
Q Consensus       101 ~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (216)
                      +..|+....... ....+||+|++||||.....  ....+..+.+                      ...+. +++.++.
T Consensus        97 ~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~----------------------~~~l~-~~~~ii~  151 (183)
T PF03602_consen   97 IKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAE----------------------NNLLN-EDGLIII  151 (183)
T ss_dssp             EESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHH----------------------TTSEE-EEEEEEE
T ss_pred             eccCHHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHH----------------------CCCCC-CCEEEEE
Confidence            999987765332 12235999999999986521  1222222221                      02233 6788888


Q ss_pred             EEeec--CC---ccccc-cceeeeeEEEEEEE
Q 027945          180 ELRYD--VP---QLYKF-HKKKEVDIAVDLWR  205 (216)
Q Consensus       180 ~~~~~--~~---~~~~~-~~~~~~~~~~~~~~  205 (216)
                      |+...  ++   ..|.. ..++++.+.+.+|+
T Consensus       152 E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~  183 (183)
T PF03602_consen  152 EHSKKEDLPESPGNWELIKERKYGDTKLSFYQ  183 (183)
T ss_dssp             EEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred             EecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence            88643  33   34533 45678999999986

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.73  E-value=9.5e-17  Score=124.12  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=79.9

Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEc
Q 027945           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC  103 (216)
Q Consensus        25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~  103 (216)
                      ..|+...+...++..+...   .++.++||+|||+|.+++.++++++.+|+++|+++.+++.++.|++.++. +++++++
T Consensus        33 ~Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~  109 (199)
T PRK10909         33 LRPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT  109 (199)
T ss_pred             cCcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3667766666666665432   35679999999999999987666777999999999999999999999887 7999999


Q ss_pred             ccccccccccCCCcccEEEEcCCCCC
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      |+.+.....  ..+||+|++||||..
T Consensus       110 D~~~~l~~~--~~~fDlV~~DPPy~~  133 (199)
T PRK10909        110 NALSFLAQP--GTPHNVVFVDPPFRK  133 (199)
T ss_pred             hHHHHHhhc--CCCceEEEECCCCCC
Confidence            998754321  124999999999864

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.72  E-value=4.5e-16  Score=117.96  Aligned_cols=119  Identities=29%  Similarity=0.450  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEccccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLE  109 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~  109 (216)
                      ..+.+|...+...   ++.++||+|||+|.+++.+++.+.. +|+++|+++.+++.++.|++.++.. ++++..|+.+..
T Consensus        18 ~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~   94 (170)
T PF05175_consen   18 AGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL   94 (170)
T ss_dssp             HHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC
T ss_pred             HHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc
Confidence            4454555544431   6779999999999999999987643 7999999999999999999999985 999999998865


Q ss_pred             ccccCCCcccEEEEcCCCCCCCC---CCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945          110 WRVCSVGHVDTVVMNPPFGTRKK---GVDMDFLSMALKVAS--QAVYSLHKTS  157 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp~~~~~~---~~~~~~l~~~~~~~~--~~~~~~~~~~  157 (216)
                      ... .   ||+|++|||++....   .....+++.+.+.+.  |.++++.+..
T Consensus        95 ~~~-~---fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen   95 PDG-K---FDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             CTT-C---EEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             ccc-c---eeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            522 4   999999999876632   122456666666654  3555555543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=9.5e-17  Score=130.50  Aligned_cols=148  Identities=21%  Similarity=0.243  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~  106 (216)
                      |......++..++........ +|||+|||||.+++.++... ..+|+++|+|+.+++.|+.|++.+++ ++.++++|++
T Consensus        92 Pr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf  170 (280)
T COG2890          92 PRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF  170 (280)
T ss_pred             cCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc
Confidence            333444455444322122222 79999999999999999764 45999999999999999999999996 6677777887


Q ss_pred             cccccccCCCcccEEEEcCCCCCCC-CCCCHHHHH-HHHhh-cCCcEEEEecCccHHHHHHHHhhhcCCccceEEEEEee
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRK-KGVDMDFLS-MALKV-ASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY  183 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~-~~~~~~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (216)
                      +....  .   ||+|++||||.... ......... +-... ..+.    ....--..+...+.+.++ +++.++.+.++
T Consensus       171 ~~~~~--~---fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~----dGl~~~~~i~~~a~~~l~-~~g~l~le~g~  240 (280)
T COG2890         171 EPLRG--K---FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG----DGLEVYRRILGEAPDILK-PGGVLILEIGL  240 (280)
T ss_pred             cccCC--c---eeEEEeCCCCCCCcccccChhhhccCHHHHHccCc----cHHHHHHHHHHhhHHHcC-CCcEEEEEECC
Confidence            75554  3   99999999998774 111111111 11110 0100    011123445555657777 78899999987


Q ss_pred             cCCc
Q 027945          184 DVPQ  187 (216)
Q Consensus       184 ~~~~  187 (216)
                      ...+
T Consensus       241 ~q~~  244 (280)
T COG2890         241 TQGE  244 (280)
T ss_pred             CcHH
Confidence            5543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.72  E-value=1.9e-16  Score=131.19  Aligned_cols=127  Identities=24%  Similarity=0.429  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      |+++....+.++..+...+...++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|++|++.+++ +++++++|
T Consensus       151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D  229 (315)
T PRK03522        151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALD  229 (315)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Confidence            456667777777666555444466899999999999999999976 5999999999999999999999988 79999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR  159 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  159 (216)
                      +.++....  .++||+|++|||    +.+.....++.+.+..+ ..+|++|+|.+.
T Consensus       230 ~~~~~~~~--~~~~D~Vv~dPP----r~G~~~~~~~~l~~~~~~~ivyvsc~p~t~  279 (315)
T PRK03522        230 STQFATAQ--GEVPDLVLVNPP----RRGIGKELCDYLSQMAPRFILYSSCNAQTM  279 (315)
T ss_pred             HHHHHHhc--CCCCeEEEECCC----CCCccHHHHHHHHHcCCCeEEEEECCcccc
Confidence            98765321  124999999999    44555555555555443 699999999983

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.71  E-value=2.5e-16  Score=133.26  Aligned_cols=126  Identities=23%  Similarity=0.398  Sum_probs=101.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      |.++....+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+.|++.++. +++++.+|
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d  289 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD  289 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            556677777777666554433456799999999999999999865 5999999999999999999999988 79999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST  158 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  158 (216)
                      +.++....  ..+||+|++|||+    .+.....++.+....+ ..+|++|+|.+
T Consensus       290 ~~~~~~~~--~~~~D~vi~DPPr----~G~~~~~l~~l~~~~p~~ivyvsc~p~T  338 (374)
T TIGR02085       290 SAKFATAQ--MSAPELVLVNPPR----RGIGKELCDYLSQMAPKFILYSSCNAQT  338 (374)
T ss_pred             HHHHHHhc--CCCCCEEEECCCC----CCCcHHHHHHHHhcCCCeEEEEEeCHHH
Confidence            98765322  1239999999995    4666777777776654 69999999988

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PHA03412 putative methyltransferase; Provisional

Probab=99.70  E-value=3.7e-16  Score=122.29  Aligned_cols=121  Identities=20%  Similarity=0.353  Sum_probs=90.6

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      ...+.++|.||..++..+..+.      ..+.+|||+|||+|.+++.+++.    ...+|+++|+|+.+++.|+.|..  
T Consensus        26 ~~~~~GqFfTP~~iAr~~~i~~------~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--   97 (241)
T PHA03412         26 NNSELGAFFTPIGLARDFTIDA------CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--   97 (241)
T ss_pred             ccccCCccCCCHHHHHHHHHhc------cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--
Confidence            3567889999999988775331      23579999999999999999864    24589999999999999998864  


Q ss_pred             CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCC----------CHHHHHHHHhhcCCcEEEE
Q 027945           95 ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV----------DMDFLSMALKVASQAVYSL  153 (216)
Q Consensus        95 ~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~----------~~~~l~~~~~~~~~~~~~~  153 (216)
                        ++.++++|+...... .+   ||+||+||||.......          ...++..+.+.++++.+++
T Consensus        98 --~~~~~~~D~~~~~~~-~~---FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL  160 (241)
T PHA03412         98 --EATWINADALTTEFD-TL---FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII  160 (241)
T ss_pred             --CCEEEEcchhccccc-CC---ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence              478999999865442 24   99999999999763111          1246667667666544433

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.70  E-value=1.6e-16  Score=133.99  Aligned_cols=150  Identities=21%  Similarity=0.253  Sum_probs=99.4

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      |....+.++..+...+  .++.++||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|++.++.+++++++|+.+
T Consensus       234 PRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e  311 (423)
T PRK14966        234 PRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD  311 (423)
T ss_pred             CCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence            4445555665555442  24569999999999999999864 56699999999999999999999888789999999976


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHH---HHHHHHhhhcCCccceEEEEEeec
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTRE---HVKKAALRDFNASSAEVLCELRYD  184 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~  184 (216)
                      .....  .++||+|++||||......   .......+..+ ...+.-...+.+   .+...+.+.|+ ++|.++.|+++.
T Consensus       312 ~~l~~--~~~FDLIVSNPPYI~~~e~---~l~~~~v~~EP-~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lilEiG~~  384 (423)
T PRK14966        312 TDMPS--EGKWDIIVSNPPYIENGDK---HLLQGDLRFEP-QIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLLEHGFD  384 (423)
T ss_pred             ccccc--CCCccEEEECCCCCCcchh---hhcchhhhcCH-HHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEEEECcc
Confidence            43221  1249999999999865321   11111111111 111111122222   34444446777 888999999886


Q ss_pred             CCc
Q 027945          185 VPQ  187 (216)
Q Consensus       185 ~~~  187 (216)
                      .++
T Consensus       385 Q~e  387 (423)
T PRK14966        385 QGA  387 (423)
T ss_pred             HHH
Confidence            544

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.70  E-value=9e-16  Score=118.09  Aligned_cols=104  Identities=18%  Similarity=0.171  Sum_probs=81.9

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF  100 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~  100 (216)
                      ...+||...+-+.+.+.+...   ..+.++||++||+|.++++++++|+.+|+++|.++.+++.+++|++.++.  ++++
T Consensus        27 ~~~rpt~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~  103 (189)
T TIGR00095        27 GSTRPTTRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV  103 (189)
T ss_pred             CCCCCchHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence            345777766666555554322   46789999999999999999999988999999999999999999999987  5899


Q ss_pred             EEcccccccccccCC-CcccEEEEcCCCCC
Q 027945          101 VQCDIRNLEWRVCSV-GHVDTVVMNPPFGT  129 (216)
Q Consensus       101 ~~~d~~~~~~~~~~~-~~fD~v~~npp~~~  129 (216)
                      +.+|+.+........ ..||+|+.||||..
T Consensus       104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~  133 (189)
T TIGR00095       104 VRNSALRALKFLAKKPTFDNVIYLDPPFFN  133 (189)
T ss_pred             EehhHHHHHHHhhccCCCceEEEECcCCCC
Confidence            999997754321111 13899999999974

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.70  E-value=3.4e-16  Score=135.37  Aligned_cols=126  Identities=19%  Similarity=0.292  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~  105 (216)
                      ..+...+..++..++..+...++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|+.|++.++. +++++++|+
T Consensus       276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~  354 (443)
T PRK13168        276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL  354 (443)
T ss_pred             EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence            34555667777777766555677899999999999999999865 5999999999999999999999887 799999999


Q ss_pred             ccccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945          106 RNLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST  158 (216)
Q Consensus       106 ~~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  158 (216)
                      .+..... -...+||+|++|||+...     ...++.+.+..+ ..+|++|+|.+
T Consensus       355 ~~~l~~~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~~~~~~ivyvSCnp~t  404 (443)
T PRK13168        355 EEDFTDQPWALGGFDKVLLDPPRAGA-----AEVMQALAKLGPKRIVYVSCNPAT  404 (443)
T ss_pred             HHhhhhhhhhcCCCCEEEECcCCcCh-----HHHHHHHHhcCCCeEEEEEeChHH
Confidence            7653210 011249999999997642     244555555443 69999999988

>TIGR00452 methyltransferase, putative

Probab=99.68  E-value=2.2e-15  Score=124.05  Aligned_cols=139  Identities=17%  Similarity=0.133  Sum_probs=110.0

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHH-hhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAE-NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~-~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~   81 (216)
                      +++|+..+.++..|+++....+++.|+.++++.++...+ ..+...++++|||+|||+|.++..++..++..|+|+|+++
T Consensus        75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~  154 (314)
T TIGR00452        75 IKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV  154 (314)
T ss_pred             HHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence            678999999999999999999999999999999997744 4445678899999999999999999988877899999999


Q ss_pred             HHHHHHHHHHHhc--CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945           82 DSLELASENAADL--ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus        82 ~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .++.+++...+..  ..++.+..+++.+.+... .   ||+|++.-.+++..  .....++++.+.++
T Consensus       155 ~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~-~---FD~V~s~gvL~H~~--dp~~~L~el~r~Lk  216 (314)
T TIGR00452       155 LFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY-A---FDTVFSMGVLYHRK--SPLEHLKQLKHQLV  216 (314)
T ss_pred             HHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC-C---cCEEEEcchhhccC--CHHHHHHHHHHhcC
Confidence            9987754432221  125778888887776543 4   99999987776652  33456777776654

Known examples to date are restricted to the proteobacteria.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.68  E-value=1.6e-15  Score=123.85  Aligned_cols=143  Identities=17%  Similarity=0.213  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhh-cCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           32 IASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        32 ~~~~~l~~~~~~-~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      ....++...+.. +...++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+.|++.+++  +++++++|+.+
T Consensus       104 ~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~  183 (284)
T TIGR03533       104 PIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA  183 (284)
T ss_pred             chHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence            444444444432 22234578999999999999999976 345999999999999999999999887  58999999876


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCC--CHHHHHHHHhhcCCcEEEEecCcc---HHHHHHHHhhhcCCccceEEEEEe
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGV--DMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELR  182 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~  182 (216)
                      .... ..   ||+|++||||.......  ...+..+...    .++  -...+   ...+...+.+.|+ ++|.++.+++
T Consensus       184 ~~~~-~~---fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~----al~--gg~dGl~~~~~il~~a~~~L~-~gG~l~~e~g  252 (284)
T TIGR03533       184 ALPG-RK---YDLIVSNPPYVDAEDMADLPAEYHHEPEL----ALA--SGEDGLDLVRRILAEAADHLN-ENGVLVVEVG  252 (284)
T ss_pred             ccCC-CC---ccEEEECCCCCCccchhhCCHhhhcCHHH----Hhc--CCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence            4322 23   99999999998653211  1111100000    000  01111   1234444547777 8889998888


Q ss_pred             ecC
Q 027945          183 YDV  185 (216)
Q Consensus       183 ~~~  185 (216)
                      +..
T Consensus       253 ~~~  255 (284)
T TIGR03533       253 NSM  255 (284)
T ss_pred             cCH
Confidence            644

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.67  E-value=1.1e-15  Score=128.75  Aligned_cols=125  Identities=18%  Similarity=0.256  Sum_probs=97.4

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~  105 (216)
                      .......+.++..+...+... +.++||++||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++ +++++.+|+
T Consensus       186 Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~  263 (362)
T PRK05031        186 QPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA  263 (362)
T ss_pred             ccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence            345566777777776654322 357999999999999988884 56999999999999999999999988 799999999


Q ss_pred             ccccccccC-------------CCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945          106 RNLEWRVCS-------------VGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST  158 (216)
Q Consensus       106 ~~~~~~~~~-------------~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (216)
                      .++......             ..+||+|++|||+    .+.....++.+.+ .+..+|++|+|.+
T Consensus       264 ~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR----~G~~~~~l~~l~~-~~~ivyvSC~p~t  324 (362)
T PRK05031        264 EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR----AGLDDETLKLVQA-YERILYISCNPET  324 (362)
T ss_pred             HHHHHHHhhcccccccccccccCCCCCEEEECCCC----CCCcHHHHHHHHc-cCCEEEEEeCHHH
Confidence            875432100             1249999999994    5667777777766 3569999999966

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.67  E-value=6e-16  Score=109.87  Aligned_cols=98  Identities=35%  Similarity=0.533  Sum_probs=75.3

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      |.+|||+|||+|.+++.+++.+..+++++|+|+.+++.++.++..++.  +++++++|+.+..... ..++||+|++|||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~~D~Iv~npP   79 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-PDGKFDLIVTNPP   79 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-TTT-EEEEEE--S
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-cCceeEEEEECCC
Confidence            458999999999999999988756999999999999999999999877  7999999998876222 2235999999999


Q ss_pred             CCCCCC------CCCHHHHHHHHhhcC
Q 027945          127 FGTRKK------GVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~------~~~~~~l~~~~~~~~  147 (216)
                      |.....      .....+++.+.+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~  106 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLK  106 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcC
Confidence            986421      122355666655544

...

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.67  E-value=7.5e-16  Score=129.28  Aligned_cols=126  Identities=23%  Similarity=0.395  Sum_probs=92.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      |.........|+..+...+...++ ++||++||+|.+++.+|+. ..+|+|+|+++.+++.|+.|++.|++ +++++.++
T Consensus       175 fQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~  252 (352)
T PF05958_consen  175 FQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGD  252 (352)
T ss_dssp             --SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred             ccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence            345577888888888887665555 8999999999999999985 55999999999999999999999999 89999988


Q ss_pred             cccccccc-------------cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945          105 IRNLEWRV-------------CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST  158 (216)
Q Consensus       105 ~~~~~~~~-------------~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++....             ....++|+|+.|||    +.+.....++.+.+. ...+|++|+|.+
T Consensus       253 ~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP----R~G~~~~~~~~~~~~-~~ivYvSCnP~t  314 (352)
T PF05958_consen  253 AEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP----RAGLDEKVIELIKKL-KRIVYVSCNPAT  314 (352)
T ss_dssp             SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-------TT-SCHHHHHHHHHS-SEEEEEES-HHH
T ss_pred             ccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC----CCCchHHHHHHHhcC-CeEEEEECCHHH
Confidence            76543211             01124899999999    999998888876554 569999999988

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.66  E-value=3.2e-15  Score=123.25  Aligned_cols=126  Identities=17%  Similarity=0.209  Sum_probs=86.6

Q ss_pred             CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+.|++.++.  +++++++|+.+.... ..   ||+|++|||
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~-~~---fDlIvsNPP  210 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPG-RR---YDLIVSNPP  210 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCC-CC---ccEEEECCC
Confidence            68999999999999999975 456999999999999999999998886  599999998764332 24   999999999


Q ss_pred             CCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc---HHHHHHHHhhhcCCccceEEEEEeec
Q 027945          127 FGTRKKGVDMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELRYD  184 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~  184 (216)
                      |.......   .+.......+ ...+.-...+   ...+...+.+.|+ ++|.++.++++.
T Consensus       211 yi~~~~~~---~l~~~~~~eP-~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~E~g~~  266 (307)
T PRK11805        211 YVDAEDMA---DLPAEYRHEP-ELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVVEVGNS  266 (307)
T ss_pred             CCCccchh---hcCHhhccCc-cceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEEEECcC
Confidence            97653211   1111111111 1111111112   1234444546777 888888888864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.66  E-value=9.4e-16  Score=134.19  Aligned_cols=176  Identities=15%  Similarity=0.204  Sum_probs=109.2

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcC------------------------CCCCCEEEEecCC
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG------------------------DVSNKVVADFGCG   58 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~------------------------~~~~~~vLD~g~G   58 (216)
                      +..|+.++...+.+-........-..|...++.++..++..+.                        ..++.+|||+|||
T Consensus        69 ~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~G  148 (506)
T PRK01544         69 HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTG  148 (506)
T ss_pred             CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCc
Confidence            4556777776666655544444434444445555554443221                        1134689999999


Q ss_pred             cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCC
Q 027945           59 CGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVD  135 (216)
Q Consensus        59 ~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~  135 (216)
                      +|.+++.+++. +..+|+++|+|+.+++.|+.|+..+++  +++++++|+.+....    ++||+|++||||........
T Consensus       149 sG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~----~~fDlIvsNPPYi~~~~~~~  224 (506)
T PRK01544        149 SGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEK----QKFDFIVSNPPYISHSEKSE  224 (506)
T ss_pred             hhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcC----CCccEEEECCCCCCchhhhh
Confidence            99999998864 556999999999999999999998876  689999998764322    23999999999987632111


Q ss_pred             HHHHHHHHhhcCCcEEEEecCccHH---HHHHHHhhhcCCccceEEEEEeecCC
Q 027945          136 MDFLSMALKVASQAVYSLHKTSTRE---HVKKAALRDFNASSAEVLCELRYDVP  186 (216)
Q Consensus       136 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~  186 (216)
                      .  ..+..+..+ ...+.-...+.+   .+...+.+.|+ ++|.++.+.++..+
T Consensus       225 l--~~~v~~~EP-~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~lEig~~q~  274 (506)
T PRK01544        225 M--AIETINYEP-SIALFAEEDGLQAYFIIAENAKQFLK-PNGKIILEIGFKQE  274 (506)
T ss_pred             c--CchhhccCc-HHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEEEECCchH
Confidence            0  001111111 111111122222   24444546666 77888888776544

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.66  E-value=1e-14  Score=117.15  Aligned_cols=124  Identities=25%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             hhhHHHHHhccCCCCCCc-cccccCCCCHHHHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeC
Q 027945            3 LKQLESVLGDLEQFSNPK-VELEQYPTGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDI   79 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~   79 (216)
                      +..|+.++...+.+.... .....| .+...+..++..++..+.. ..+.+|||+|||+|.+++.+++. +..+|+++|+
T Consensus        40 ~~Pl~yi~g~~~f~g~~~~v~~~vf-~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi  118 (251)
T TIGR03704        40 GLPLEHVLGWAEFCGLRIAVDPGVF-VPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADI  118 (251)
T ss_pred             CCCHHHhcccCeEcCeEEEECCCCc-CCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEEC
Confidence            456677777544432211 111112 2333455555555443332 23458999999999999999864 4458999999


Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           80 DSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        80 ~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      |+.+++.|+.|++.++  .+++++|+.+..... ..++||+|++||||...
T Consensus       119 s~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~-~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704       119 DPAAVRCARRNLADAG--GTVHEGDLYDALPTA-LRGRVDILAANAPYVPT  166 (251)
T ss_pred             CHHHHHHHHHHHHHcC--CEEEEeechhhcchh-cCCCEeEEEECCCCCCc
Confidence            9999999999998876  578999987654321 12349999999999754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4.5e-15  Score=119.43  Aligned_cols=106  Identities=20%  Similarity=0.331  Sum_probs=84.3

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ....+.+|||+|||.|.+++.+++.. ..+++.+|+|..+++.++.|+..|+.. .+++.+|..+-...  +   ||+|+
T Consensus       155 ~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~--k---fd~Ii  229 (300)
T COG2813         155 PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG--K---FDLII  229 (300)
T ss_pred             CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc--c---ccEEE
Confidence            33344599999999999999999874 679999999999999999999999884 37888888876554  3   99999


Q ss_pred             EcCCCCCCCCCCC---HHHHHHHHhhcC--CcEEEEec
Q 027945          123 MNPPFGTRKKGVD---MDFLSMALKVAS--QAVYSLHK  155 (216)
Q Consensus       123 ~npp~~~~~~~~~---~~~l~~~~~~~~--~~~~~~~~  155 (216)
                      +|||||.-..-..   .+++..+.+.+.  |.++++.+
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            9999996632222   256677766653  68888877

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.65  E-value=1.3e-14  Score=110.95  Aligned_cols=78  Identities=22%  Similarity=0.312  Sum_probs=68.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++.|++.++.+++++.+|+.+....  +   ||+|++|||
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--~---fD~Vi~n~p   91 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRG--K---FDVILFNPP   91 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCC--c---ccEEEECCC
Confidence            3557899999999999999998776 999999999999999999998887889999998775432  4   999999999


Q ss_pred             CCCC
Q 027945          127 FGTR  130 (216)
Q Consensus       127 ~~~~  130 (216)
                      |+..
T Consensus        92 ~~~~   95 (179)
T TIGR00537        92 YLPL   95 (179)
T ss_pred             CCCC
Confidence            9866

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.65  E-value=1.9e-15  Score=123.60  Aligned_cols=128  Identities=22%  Similarity=0.309  Sum_probs=86.9

Q ss_pred             CEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           50 KVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .+|||+|||+|.+++.++... ..+|+++|+++.+++.|+.|++.++.  +++++++|+.+..... .   ||+|++|||
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~-~---fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQ-K---IDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCC-C---ccEEEECCC
Confidence            689999999999999999753 46999999999999999999998887  3999999998743322 3   999999999


Q ss_pred             CCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc---HHHHHHHHhhhcCCccceEEEEEeecCC
Q 027945          127 FGTRKKGVDMDFLSMALKVASQAVYSLHKTST---REHVKKAALRDFNASSAEVLCELRYDVP  186 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~  186 (216)
                      |.......   .+.......+ ...+.-...+   ...+...+.+.|+ ++|.++.++++...
T Consensus       192 yi~~~~~~---~~~~~~~~eP-~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~e~g~~q~  249 (284)
T TIGR00536       192 YIDEEDLA---DLPNVVRFEP-LLALVGGDDGLNILRQIIELAPDYLK-PNGFLVCEIGNWQQ  249 (284)
T ss_pred             CCCcchhh---cCCcccccCc-HHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEEEECccHH
Confidence            98653211   0111111001 0000001111   2334444546776 88888888886543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.63  E-value=4.4e-15  Score=123.83  Aligned_cols=98  Identities=28%  Similarity=0.291  Sum_probs=78.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|.+++.++..+. +++|+|+|+.+++.++.|++.++. ++.+.++|+.+.+.....   ||+|++
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~---~D~Iv~  254 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES---VDAIAT  254 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC---CCEEEE
Confidence            345778999999999999999887654 999999999999999999998887 678999999987665434   999999


Q ss_pred             cCCCCCCCCC--C-----CHHHHHHHHhhc
Q 027945          124 NPPFGTRKKG--V-----DMDFLSMALKVA  146 (216)
Q Consensus       124 npp~~~~~~~--~-----~~~~l~~~~~~~  146 (216)
                      ||||+.....  .     ...+++.+.+.+
T Consensus       255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~L  284 (329)
T TIGR01177       255 DPPYGRSTTAAGDGLESLYERSLEEFHEVL  284 (329)
T ss_pred             CCCCcCcccccCCchHHHHHHHHHHHHHHc
Confidence            9999875211  1     234555555554

This family is found exclusively in the Archaea.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.63  E-value=6e-15  Score=123.90  Aligned_cols=124  Identities=19%  Similarity=0.267  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~  106 (216)
                      ......+.++..+...... .+.++||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|++.+++ +++++.+|+.
T Consensus       178 ~N~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~  255 (353)
T TIGR02143       178 PNAAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE  255 (353)
T ss_pred             CCHHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence            3455667777777665332 2347999999999999999885 45999999999999999999999988 7999999998


Q ss_pred             cccccc---------c----CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945          107 NLEWRV---------C----SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST  158 (216)
Q Consensus       107 ~~~~~~---------~----~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (216)
                      ++....         .    ...+||+|++|||    +.+.....++.+.+ .+..+|++|+|.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP----R~G~~~~~l~~l~~-~~~ivYvsC~p~t  315 (353)
T TIGR02143       256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP----RAGLDPDTCKLVQA-YERILYISCNPET  315 (353)
T ss_pred             HHHHHHhhccccccccccccccCCCCEEEECCC----CCCCcHHHHHHHHc-CCcEEEEEcCHHH
Confidence            754321         0    0113899999999    67777778787766 4579999999987

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK14967 putative methyltransferase; Provisional

Probab=99.63  E-value=1.4e-14  Score=114.57  Aligned_cols=92  Identities=30%  Similarity=0.339  Sum_probs=74.1

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccC
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCS  114 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~  114 (216)
                      .++...+......++.+|||+|||+|.+++.+++.+..+++++|+++.+++.++.|++.++.+++++++|+.+... ...
T Consensus        23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~-~~~  101 (223)
T PRK14967         23 QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE-FRP  101 (223)
T ss_pred             HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc-CCC
Confidence            3444444433445678999999999999999998766699999999999999999999888788899999876432 224


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                         ||+|++||||...
T Consensus       102 ---fD~Vi~npPy~~~  114 (223)
T PRK14967        102 ---FDVVVSNPPYVPA  114 (223)
T ss_pred             ---eeEEEECCCCCCC
Confidence               9999999999765

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.62  E-value=2.5e-14  Score=109.40  Aligned_cols=159  Identities=16%  Similarity=0.215  Sum_probs=104.2

Q ss_pred             CCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945           17 SNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE   95 (216)
Q Consensus        17 ~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~   95 (216)
                      .++.....+..+++++........+......++.+|||+|||+|.+++.++..+ ..+|+++|+++.+++.++.+++.++
T Consensus        11 ~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~   90 (181)
T TIGR00138        11 WNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG   90 (181)
T ss_pred             HhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC
Confidence            344556666666666655555444333234568899999999999999988653 5689999999999999999999888


Q ss_pred             C-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCccHHHHHHHHhhhcCC
Q 027945           96 L-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTSTREHVKKAALRDFNA  172 (216)
Q Consensus        96 ~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~  172 (216)
                      . +++++++|+.+... ...   ||+|+++. ++.     ....++.+.+.++  +.+++...+.....+.... +.+..
T Consensus        91 ~~~i~~i~~d~~~~~~-~~~---fD~I~s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~-e~~~~  159 (181)
T TIGR00138        91 LNNVEIVNGRAEDFQH-EEQ---FDVITSRA-LAS-----LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAK-RKCQV  159 (181)
T ss_pred             CCCeEEEecchhhccc-cCC---ccEEEehh-hhC-----HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHH-Hhhhh
Confidence            7 79999999988632 224   99999986 321     2244555555443  3555555555555555544 32222


Q ss_pred             ccceEEEEEeecCC
Q 027945          173 SSAEVLCELRYDVP  186 (216)
Q Consensus       173 ~~~~~~~~~~~~~~  186 (216)
                      .+.+.+..-.+..|
T Consensus       160 ~~~~~~~~~~~~~~  173 (181)
T TIGR00138       160 LGVEPLEVPPLTGP  173 (181)
T ss_pred             cCceEeeccccCCC
Confidence            45555544444444

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.62  E-value=7.8e-15  Score=126.62  Aligned_cols=127  Identities=20%  Similarity=0.330  Sum_probs=98.6

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~  106 (216)
                      ..+.....++..+...+...++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|+.|++.++. +++++.+|+.
T Consensus       272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~  350 (431)
T TIGR00479       272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE  350 (431)
T ss_pred             cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence            445566666666666544456689999999999999999985 45999999999999999999999988 7999999997


Q ss_pred             cccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945          107 NLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR  159 (216)
Q Consensus       107 ~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  159 (216)
                      +..... ....+||+|++|||    +.+....+++.+.+..+ +.+|++|+|.+.
T Consensus       351 ~~l~~~~~~~~~~D~vi~dPP----r~G~~~~~l~~l~~l~~~~ivyvsc~p~tl  401 (431)
T TIGR00479       351 TVLPKQPWAGQIPDVLLLDPP----RKGCAAEVLRTIIELKPERIVYVSCNPATL  401 (431)
T ss_pred             HHHHHHHhcCCCCCEEEECcC----CCCCCHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence            743221 01124999999999    45666777776665544 588999998874

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.61  E-value=9.8e-14  Score=106.45  Aligned_cols=168  Identities=17%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             hHHHHHhccCCCCCCccccccCCCCHH-HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHH
Q 027945            5 QLESVLGDLEQFSNPKVELEQYPTGPH-IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSD   82 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~   82 (216)
                      |++.++.-+..|...- ....-++.+. +...++......-...++.+|||+|||+|..++.+++. +..+|+++|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~   80 (187)
T PRK00107          2 QLEAYVELLVKWNKKY-NLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGK   80 (187)
T ss_pred             hHHHHHHHHHHhcccc-cccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHH
Confidence            4555666555553322 2222333333 44444444433212234789999999999999999863 5569999999999


Q ss_pred             HHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-C-cEEEEecCccH
Q 027945           83 SLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-Q-AVYSLHKTSTR  159 (216)
Q Consensus        83 ~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~  159 (216)
                      +++.|+++++.++. +++++++|+.+... ..+   ||+|+++.-      .....+++.+.+..+ + .+++...+...
T Consensus        81 ~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~---fDlV~~~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~  150 (187)
T PRK00107         81 KIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEK---FDVVTSRAV------ASLSDLVELCLPLLKPGGRFLALKGRDPE  150 (187)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCC---ccEEEEccc------cCHHHHHHHHHHhcCCCeEEEEEeCCChH
Confidence            99999999999887 69999999988655 334   999999741      223466777776654 3 44444444444


Q ss_pred             HHHHHHHhhhcCCccceEEEEEeecCCc
Q 027945          160 EHVKKAALRDFNASSAEVLCELRYDVPQ  187 (216)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~  187 (216)
                      ..+.... +.+   +..+.....|.+|.
T Consensus       151 ~~l~~~~-~~~---~~~~~~~~~~~~~~  174 (187)
T PRK00107        151 EEIAELP-KAL---GGKVEEVIELTLPG  174 (187)
T ss_pred             HHHHHHH-Hhc---CceEeeeEEEecCC
Confidence            5555444 433   33333334455543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.61  E-value=1.5e-14  Score=114.00  Aligned_cols=135  Identities=21%  Similarity=0.291  Sum_probs=97.8

Q ss_pred             hHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHH
Q 027945            5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDS   83 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~   83 (216)
                      .+.+..+.+...+.---..-.+.....|-..+...+.    ..+|.+|||+|||||.+++.+++. |.++|+++|+|+.|
T Consensus        12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~----~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~M   87 (238)
T COG2226          12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG----IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM   87 (238)
T ss_pred             HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC----CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHH
Confidence            3444544444433222222233334444444444432    237899999999999999999976 56799999999999


Q ss_pred             HHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCC
Q 027945           84 LELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus        84 ~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~  148 (216)
                      ++.|++.+...+. +++++++|++++++++.+   ||+|.+.  |....-......|+++.+.+++
T Consensus        88 L~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~s---FD~vt~~--fglrnv~d~~~aL~E~~RVlKp  148 (238)
T COG2226          88 LEVAREKLKKKGVQNVEFVVGDAENLPFPDNS---FDAVTIS--FGLRNVTDIDKALKEMYRVLKP  148 (238)
T ss_pred             HHHHHHHhhccCccceEEEEechhhCCCCCCc---cCEEEee--ehhhcCCCHHHHHHHHHHhhcC
Confidence            9999999998766 599999999999999888   9999984  3333344556788999888763

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.61  E-value=9.5e-15  Score=122.89  Aligned_cols=104  Identities=17%  Similarity=0.254  Sum_probs=78.1

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccccCCCcccEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .+.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.|+.|++.++.    +++++.+|........ +   ||+|+
T Consensus       228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~-~---fDlIl  303 (378)
T PRK15001        228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF-R---FNAVL  303 (378)
T ss_pred             cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC-C---EEEEE
Confidence            3469999999999999999976 456999999999999999999988763    5788999987643222 3   99999


Q ss_pred             EcCCCCCCCCC---CCHHHHHHHHhhcC--CcEEEEec
Q 027945          123 MNPPFGTRKKG---VDMDFLSMALKVAS--QAVYSLHK  155 (216)
Q Consensus       123 ~npp~~~~~~~---~~~~~l~~~~~~~~--~~~~~~~~  155 (216)
                      +||||+.....   ....+++.+.+.++  |.++++.+
T Consensus       304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            99999875321   12345566665543  45555543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.58  E-value=9.6e-14  Score=111.32  Aligned_cols=94  Identities=28%  Similarity=0.354  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE  109 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~  109 (216)
                      ....++..+...+. ..+.+|||+|||+|.++..+++. +..+++++|+++.+++.++.+++.++. +++++++|+.+..
T Consensus        72 ~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~  150 (251)
T TIGR03534        72 DTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL  150 (251)
T ss_pred             ChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC
Confidence            33444444444322 34568999999999999999975 455999999999999999999998887 5999999997743


Q ss_pred             ccccCCCcccEEEEcCCCCCC
Q 027945          110 WRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp~~~~  130 (216)
                      . ...   ||+|++||||...
T Consensus       151 ~-~~~---fD~Vi~npPy~~~  167 (251)
T TIGR03534       151 P-GGK---FDLIVSNPPYIPE  167 (251)
T ss_pred             c-CCc---eeEEEECCCCCch
Confidence            2 224   9999999999865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.57  E-value=2.1e-14  Score=109.60  Aligned_cols=95  Identities=39%  Similarity=0.552  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CC--------eEEEEeCCHHHHHHHHHHHHhcCC--
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--AD--------QVIAIDIDSDSLELASENAADLEL--   96 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~--------~v~~~D~~~~~~~~a~~~~~~~~~--   96 (216)
                      .+.++..|+....    ..++.++||+.||+|.+.++.+..+  ..        +++|.|+++.+++.|+.|++..+.  
T Consensus        13 ~~~lA~~ll~la~----~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~   88 (179)
T PF01170_consen   13 RPTLAAALLNLAG----WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED   88 (179)
T ss_dssp             -HHHHHHHHHHTT------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred             CHHHHHHHHHHhC----CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence            3556666665443    3477899999999999999988653  32        288999999999999999999887  


Q ss_pred             CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      .+.+.+.|+.+++.....   +|.|++||||+..
T Consensus        89 ~i~~~~~D~~~l~~~~~~---~d~IvtnPPyG~r  119 (179)
T PF01170_consen   89 YIDFIQWDARELPLPDGS---VDAIVTNPPYGRR  119 (179)
T ss_dssp             GEEEEE--GGGGGGTTSB---SCEEEEE--STTS
T ss_pred             ceEEEecchhhcccccCC---CCEEEECcchhhh
Confidence            589999999998854435   9999999999987

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.57  E-value=2e-14  Score=113.97  Aligned_cols=136  Identities=19%  Similarity=0.248  Sum_probs=72.9

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCC
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDID   80 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~   80 (216)
                      ++++...++++.+.++--...-.+.....|...++...    ...++.+|||+|||||.++..++++ + ..+|+++|++
T Consensus         6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s   81 (233)
T PF01209_consen    6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDIS   81 (233)
T ss_dssp             -------------------------------SHHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-
T ss_pred             HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCC
Confidence            44555565555544433323323333344544444332    3457789999999999999999975 3 4699999999


Q ss_pred             HHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945           81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.|++.|++++...+. +++++++|+.++++.+++   ||+|++---++  .-......++++.+.++
T Consensus        82 ~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s---fD~v~~~fglr--n~~d~~~~l~E~~RVLk  144 (233)
T PF01209_consen   82 PGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS---FDAVTCSFGLR--NFPDRERALREMYRVLK  144 (233)
T ss_dssp             HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT----EEEEEEES-GG--G-SSHHHHHHHHHHHEE
T ss_pred             HHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc---eeEEEHHhhHH--hhCCHHHHHHHHHHHcC
Confidence            9999999999988766 899999999999988767   99999844433  22345678888888876

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.57  E-value=1.1e-13  Score=114.83  Aligned_cols=139  Identities=19%  Similarity=0.152  Sum_probs=107.6

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHh-hcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAEN-SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~-~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~   81 (216)
                      +++++..+..+.+|+++.....++.+..++.+.+....+. .+...++++|||+|||+|..+..++..+...|+|+|+++
T Consensus        76 ~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~  155 (322)
T PRK15068         76 RKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ  155 (322)
T ss_pred             HHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence            5688999999999999999998988888877777655543 444577899999999999999999988877899999999


Q ss_pred             HHHHHHHHHHHhc--CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945           82 DSLELASENAADL--ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus        82 ~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .++..++...+..  ..++.++.+|+.+.+. ...   ||+|++.-..++..  .....++++.+.++
T Consensus       156 ~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~---FD~V~s~~vl~H~~--dp~~~L~~l~~~Lk  217 (322)
T PRK15068        156 LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA---FDTVFSMGVLYHRR--SPLDHLKQLKDQLV  217 (322)
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC---cCEEEECChhhccC--CHHHHHHHHHHhcC
Confidence            9887665443332  2268999999988776 335   99999976665542  33456677766654

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.56  E-value=5.9e-14  Score=117.19  Aligned_cols=104  Identities=19%  Similarity=0.298  Sum_probs=78.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ...+|||+|||+|.++..+++.. ..+|+++|+++.+++.++.|++.++...+++.+|+....  .   ++||+|++|||
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~--~---~~fDlIvsNPP  270 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDI--K---GRFDMIISNPP  270 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccccc--C---CCccEEEECCC
Confidence            34589999999999999999764 458999999999999999999999887788888886532  2   23999999999


Q ss_pred             CCCCCCC---CCHHHHHHHHhhcC--CcEEEEecC
Q 027945          127 FGTRKKG---VDMDFLSMALKVAS--QAVYSLHKT  156 (216)
Q Consensus       127 ~~~~~~~---~~~~~l~~~~~~~~--~~~~~~~~~  156 (216)
                      ||.....   ....+++.+.+.++  |.++++.+.
T Consensus       271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            9864222   22456666666554  355555543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.55  E-value=2.2e-13  Score=115.71  Aligned_cols=85  Identities=27%  Similarity=0.358  Sum_probs=71.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccccccc-CCCcccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVC-SVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~-~~~~fD~v~  122 (216)
                      .++++|||+|||+|.+++.++..++.+|+++|+|+.+++.|++|++.|++   +++++++|+.++..... ..++||+|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            36789999999999999988876777999999999999999999999986   58999999988754321 123599999


Q ss_pred             EcCCCCCCC
Q 027945          123 MNPPFGTRK  131 (216)
Q Consensus       123 ~npp~~~~~  131 (216)
                      +||||....
T Consensus       299 lDPP~f~~~  307 (396)
T PRK15128        299 MDPPKFVEN  307 (396)
T ss_pred             ECCCCCCCC
Confidence            999997654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=2e-13  Score=111.09  Aligned_cols=95  Identities=25%  Similarity=0.288  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEccccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLE  109 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~  109 (216)
                      ....++..+.......++.+|||+|||+|.+++.++... ..+++++|+++.+++.|+.|+... ..++.++++|+.+..
T Consensus        92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~  171 (275)
T PRK09328         92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL  171 (275)
T ss_pred             CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC
Confidence            334444444433334466799999999999999999763 569999999999999999999822 227899999986643


Q ss_pred             ccccCCCcccEEEEcCCCCCC
Q 027945          110 WRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp~~~~  130 (216)
                      . .   ++||+|++||||...
T Consensus       172 ~-~---~~fD~Iv~npPy~~~  188 (275)
T PRK09328        172 P-G---GRFDLIVSNPPYIPE  188 (275)
T ss_pred             C-C---CceeEEEECCCcCCc
Confidence            3 2   249999999999765

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.54  E-value=6.3e-14  Score=98.60  Aligned_cols=74  Identities=34%  Similarity=0.516  Sum_probs=61.5

Q ss_pred             CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc-ccccccccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI-RNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~-~~~~~~~~~~~~fD~v~~  123 (216)
                      |+.+|||+|||+|.+++.+++ .+..+|+++|+|+.+++.|++++...+.  +++++++|+ ....... .   ||+|++
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~---~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLE-P---FDLVIC   76 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSS-C---EEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCC-C---CCEEEE
Confidence            467999999999999999998 3566999999999999999999955544  899999999 2222222 3   999999


Q ss_pred             cC
Q 027945          124 NP  125 (216)
Q Consensus       124 np  125 (216)
                      +.
T Consensus        77 ~~   78 (112)
T PF12847_consen   77 SG   78 (112)
T ss_dssp             CS
T ss_pred             CC
Confidence            87

...

>PHA03411 putative methyltransferase; Provisional

Probab=99.54  E-value=5.5e-14  Score=112.53  Aligned_cols=94  Identities=17%  Similarity=0.314  Sum_probs=75.2

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFV  101 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~  101 (216)
                      .++|.||..++..++.      ......+|||+|||+|.+++.++.+ +..+|+++|+++.+++.++.+..    +++++
T Consensus        45 ~G~FfTP~~i~~~f~~------~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v  114 (279)
T PHA03411         45 SGAFFTPEGLAWDFTI------DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWI  114 (279)
T ss_pred             ceeEcCCHHHHHHHHh------ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEE
Confidence            4789999998765431      1123468999999999999988865 34699999999999999998753    57899


Q ss_pred             EcccccccccccCCCcccEEEEcCCCCCC
Q 027945          102 QCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ++|+.++.... .   ||+|++||||+..
T Consensus       115 ~~D~~e~~~~~-k---FDlIIsNPPF~~l  139 (279)
T PHA03411        115 TSDVFEFESNE-K---FDVVISNPPFGKI  139 (279)
T ss_pred             ECchhhhcccC-C---CcEEEEcCCcccc
Confidence            99998875432 4   9999999999886

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.6e-13  Score=111.10  Aligned_cols=126  Identities=25%  Similarity=0.300  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC--eEEEEc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC  103 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~  103 (216)
                      |-|+.+-...+....+.. ...++++|||+|||||.+++.+++.|+.+|+|+|+||.+++.|++|++.|++.  +.....
T Consensus       141 FGTG~HpTT~lcL~~Le~-~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~  219 (300)
T COG2264         141 FGTGTHPTTSLCLEALEK-LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF  219 (300)
T ss_pred             cCCCCChhHHHHHHHHHH-hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence            557777666666666665 34588999999999999999999999999999999999999999999999874  333333


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHH
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREH  161 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      +..+.+..    ++||+|++|---     .-......++.+..++..+++...-..++
T Consensus       220 ~~~~~~~~----~~~DvIVANILA-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q  268 (300)
T COG2264         220 LLLEVPEN----GPFDVIVANILA-----EVLVELAPDIKRLLKPGGRLILSGILEDQ  268 (300)
T ss_pred             cchhhccc----CcccEEEehhhH-----HHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence            33333222    249999998531     11223444555555444444444333333

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.53  E-value=1.4e-13  Score=106.57  Aligned_cols=96  Identities=20%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|..++.+++++. +|+++|+++.+++.++.++..+++++++..+|+....... .   ||+|+++.+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~---fD~I~~~~~  103 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNE-D---YDFIFSTVV  103 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccC-C---CCEEEEecc
Confidence            3567999999999999999998775 9999999999999999998887777778888876544332 4   999999999


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |+..........++.+.+.++
T Consensus       104 ~~~~~~~~~~~~l~~~~~~Lk  124 (195)
T TIGR00477       104 FMFLQAGRVPEIIANMQAHTR  124 (195)
T ss_pred             cccCCHHHHHHHHHHHHHHhC
Confidence            887654444566776666654

Part of a tellurite-reducing operon tehA and tehB

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.53  E-value=8.8e-14  Score=105.32  Aligned_cols=84  Identities=20%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ..+...++.++||+|||+|.++..+++++ .+|+++|+|+.+++.+++++... .+++++++|+.++......   ||.|
T Consensus         7 ~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~~~~---~d~v   81 (169)
T smart00650        7 RAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLPKLQ---PYKV   81 (169)
T ss_pred             HhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCccccC---CCEE
Confidence            33344567799999999999999999874 59999999999999999998642 2789999999988765434   9999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++||||+..
T Consensus        82 i~n~Py~~~   90 (169)
T smart00650       82 VGNLPYNIS   90 (169)
T ss_pred             EECCCcccH
Confidence            999999853

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.53  E-value=2.1e-13  Score=101.40  Aligned_cols=96  Identities=28%  Similarity=0.456  Sum_probs=76.6

Q ss_pred             CCCEEEEecCCcchHHHHHH-Hc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945           48 SNKVVADFGCGCGTLGAAAT-LL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~-~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ++.+|||+|||+|.++..++ +. +..+++|+|+++.+++.|+.+++..+. +++++++|+.++.... . ++||+|+++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~-~-~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQEL-E-EKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCS-S-TTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccccc-C-CCeeEEEEc
Confidence            56799999999999999999 43 356999999999999999999998888 7999999999954211 0 249999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++++.  ......++.+.+.+.
T Consensus        81 ~~l~~~--~~~~~~l~~~~~~lk  101 (152)
T PF13847_consen   81 GVLHHF--PDPEKVLKNIIRLLK  101 (152)
T ss_dssp             STGGGT--SHHHHHHHHHHHHEE
T ss_pred             Cchhhc--cCHHHHHHHHHHHcC
Confidence            998655  223456777777765

...

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.53  E-value=3.2e-13  Score=122.66  Aligned_cols=109  Identities=20%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEEEc
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ++++|||+|||+|.+++.+++.|+.+|+++|+|+.+++.|+.|++.|+.   +++++++|+.++....  ..+||+|++|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~--~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA--REQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc--CCCcCEEEEC
Confidence            5789999999999999999998777899999999999999999999987   5899999998765322  1249999999


Q ss_pred             CCCCCCCCC---------CCHHHHHHHHhhcC--CcEEEEecCcc
Q 027945          125 PPFGTRKKG---------VDMDFLSMALKVAS--QAVYSLHKTST  158 (216)
Q Consensus       125 pp~~~~~~~---------~~~~~l~~~~~~~~--~~~~~~~~~~~  158 (216)
                      |||......         .+...+..+.+...  +.+++++....
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~  660 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG  660 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            999765332         12344555555543  35555555443

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.53  E-value=4.9e-13  Score=99.51  Aligned_cols=116  Identities=33%  Similarity=0.412  Sum_probs=77.8

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      .+|+|++||.|..++.+|+. ..+|+++|+|+..++.|+.|++..|+  +++++++|+.+..........+|+|+++||+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW   79 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW   79 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred             CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence            37999999999999999996 45999999999999999999999998  7999999999976554211127999999999


Q ss_pred             CCCC----------CCC----CHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          128 GTRK----------KGV----DMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       128 ~~~~----------~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      +.+.          ...    ....++.+.+..+..++.+-.......+.+..
T Consensus        80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~~  132 (163)
T PF09445_consen   80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSDLNQLSQLT  132 (163)
T ss_dssp             SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT-
T ss_pred             CCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHh
Confidence            8651          111    12455555666666666666666677776654

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.53  E-value=9.3e-13  Score=98.04  Aligned_cols=185  Identities=18%  Similarity=0.169  Sum_probs=119.6

Q ss_pred             HHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcC---CCCCC-EEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHH
Q 027945            9 VLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG---DVSNK-VVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDS   83 (216)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~---~~~~~-~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~   83 (216)
                      +-.++.-|+.+...-+-|+. .....+++.++.....   ..+.. +|||+|||.|.+...+++.+ ..+.+|+|.++.+
T Consensus        25 Y~~El~Nfr~hgd~GEvWFg-~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~A  103 (227)
T KOG1271|consen   25 YELELTNFREHGDEGEVWFG-EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKA  103 (227)
T ss_pred             HHHHHhhcccCCCccceecC-CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHH
Confidence            34455666655555555655 3455556666554422   23333 99999999999999999877 4469999999999


Q ss_pred             HHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCC---------CCCCCCHHHHHHHHhhcCCcEEE
Q 027945           84 LELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT---------RKKGVDMDFLSMALKVASQAVYS  152 (216)
Q Consensus        84 ~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~---------~~~~~~~~~l~~~~~~~~~~~~~  152 (216)
                      ++.|+..+++.+.  .+++.+.|+....+..+   +||+|+--..|..         .+...+...++.+++..+-.+..
T Consensus       104 V~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~---qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt  180 (227)
T KOG1271|consen  104 VELAQNIAERDGFSNEIRFQQLDITDPDFLSG---QFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT  180 (227)
T ss_pred             HHHHHHHHHhcCCCcceeEEEeeccCCccccc---ceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence            9999999999988  39999999988543332   2666553222222         12245667777777744444555


Q ss_pred             EecCccHHHHHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEE
Q 027945          153 LHKTSTREHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWR  205 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (216)
                      +|| .+.+.+.+.+..    .+.+...+.  +.| .|.|..+....+....|+
T Consensus       181 SCN-~T~dELv~~f~~----~~f~~~~tv--p~p-tF~FgG~~G~tvt~vaF~  225 (227)
T KOG1271|consen  181 SCN-FTKDELVEEFEN----FNFEYLSTV--PTP-TFMFGGSVGSTVTSVAFL  225 (227)
T ss_pred             ecC-ccHHHHHHHHhc----CCeEEEEee--ccc-eEEeccccccEEEEEEEe
Confidence            666 455556555522    223333322  333 789988888777766664

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.52  E-value=2.4e-13  Score=105.44  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=78.4

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.++.++...++ ++++..+|+.+..... .   ||+|+++.
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~---fD~I~~~~  103 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG-E---YDFILSTV  103 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC-C---cCEEEEec
Confidence            4567999999999999999999765 999999999999999999988777 5889999988765432 4   99999998


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .++.........+++++.+.++
T Consensus       104 ~~~~~~~~~~~~~l~~i~~~Lk  125 (197)
T PRK11207        104 VLMFLEAKTIPGLIANMQRCTK  125 (197)
T ss_pred             chhhCCHHHHHHHHHHHHHHcC
Confidence            8776544445566777776665

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.51  E-value=1.3e-13  Score=112.42  Aligned_cols=95  Identities=36%  Similarity=0.432  Sum_probs=73.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~  105 (216)
                      |-|+.+-...+....+..+ ..++++|||+|||||.+++..++.|+.+|+++|+||.+++.|++|+..|++...+.....
T Consensus       140 FGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~  218 (295)
T PF06325_consen  140 FGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS  218 (295)
T ss_dssp             S-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred             ccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence            7788888888888888774 456789999999999999999999998999999999999999999999998333333222


Q ss_pred             ccccccccCCCcccEEEEcCC
Q 027945          106 RNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .+...     ++||+|++|--
T Consensus       219 ~~~~~-----~~~dlvvANI~  234 (295)
T PF06325_consen  219 EDLVE-----GKFDLVVANIL  234 (295)
T ss_dssp             SCTCC-----S-EEEEEEES-
T ss_pred             ccccc-----ccCCEEEECCC
Confidence            22222     34999999865

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.50  E-value=9.1e-14  Score=113.91  Aligned_cols=118  Identities=31%  Similarity=0.392  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEc-cccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIRN  107 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~-d~~~  107 (216)
                      +.++-.|.+..    ...+|..+||+.||||.+.+++...|. +++|+|++..|++-|+.|++..++ ...+... |+..
T Consensus       183 P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~  257 (347)
T COG1041         183 PRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN  257 (347)
T ss_pred             HHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence            44444444433    345888999999999999999999887 999999999999999999999987 5555555 9999


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCC--C-----CCHHHHHHHHhhcCCcEEEEec
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKK--G-----VDMDFLSMALKVASQAVYSLHK  155 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~--~-----~~~~~l~~~~~~~~~~~~~~~~  155 (216)
                      .++...+   +|.|++||||+...+  .     .+..+++.+.+.+++..+++..
T Consensus       258 lpl~~~~---vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         258 LPLRDNS---VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             CCCCCCc---cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            8877655   999999999988732  2     2345566666666544443333

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.49  E-value=7.2e-13  Score=105.14  Aligned_cols=98  Identities=19%  Similarity=0.275  Sum_probs=79.1

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++. + ..+|+|+|+++.+++.++.++...+. +++++++|+.+.+....+   ||+|
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~---fD~V  118 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS---FDYV  118 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC---ccEE
Confidence            4456789999999999999999875 3 45999999999999999999887766 789999999887654434   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++.+++..  ......++++.+.++
T Consensus       119 ~~~~~l~~~--~~~~~~l~~~~~~Lk  142 (231)
T TIGR02752       119 TIGFGLRNV--PDYMQVLREMYRVVK  142 (231)
T ss_pred             EEecccccC--CCHHHHHHHHHHHcC
Confidence            998777654  234567788777765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.49  E-value=1.1e-12  Score=110.34  Aligned_cols=124  Identities=23%  Similarity=0.289  Sum_probs=92.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCC-cccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVG-HVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~-~fD~v~  122 (216)
                      ..|++|||++|-||.+++.++..|+.+|++||+|..+++.|++|++.||+   +..++++|++++.......+ +||+|+
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            35899999999999999999998888999999999999999999999998   57999999999876653333 799999


Q ss_pred             EcCCCCCCCCCCC-------HHHHHHHHhhcC-C-cEE-EEecCc-cHHHHHHHHhhhc
Q 027945          123 MNPPFGTRKKGVD-------MDFLSMALKVAS-Q-AVY-SLHKTS-TREHVKKAALRDF  170 (216)
Q Consensus       123 ~npp~~~~~~~~~-------~~~l~~~~~~~~-~-~~~-~~~~~~-~~~~~~~~~~~~l  170 (216)
                      +|||-....+...       ...+..+++.+. + .++ .+|... ..+.+.+.+.+..
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~  354 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAA  354 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHH
Confidence            9999877644433       344455555554 2 333 333333 2444444443333

>PRK14968 putative methyltransferase; Provisional

Probab=99.49  E-value=2.6e-12  Score=98.48  Aligned_cols=79  Identities=23%  Similarity=0.379  Sum_probs=67.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC---eEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD---IDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++.++||+|||+|.++..++..+ .+++++|+++.+++.+++++..++.+   +.++++|+.+..... .   ||+|++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~---~d~vi~   96 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGD-K---FDVILF   96 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccccc-C---ceEEEE
Confidence            467799999999999999999875 59999999999999999999888773   889999987744332 4   999999


Q ss_pred             cCCCCCC
Q 027945          124 NPPFGTR  130 (216)
Q Consensus       124 npp~~~~  130 (216)
                      ||||...
T Consensus        97 n~p~~~~  103 (188)
T PRK14968         97 NPPYLPT  103 (188)
T ss_pred             CCCcCCC
Confidence            9999763

>PLN02672 methionine S-methyltransferase

Probab=99.49  E-value=3e-13  Score=125.77  Aligned_cols=176  Identities=15%  Similarity=0.117  Sum_probs=109.8

Q ss_pred             CCHHHHHHHHHHHHhhcCC--CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--------
Q 027945           28 TGPHIASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--------   96 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~--~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--------   96 (216)
                      .|...+..++.. +...+.  .++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+.|++.|+.        
T Consensus        97 IPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         97 IPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             cCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            455566666555 332221  13568999999999999999975 446999999999999999999988631        


Q ss_pred             ---------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC--CCHHHHHHH----Hh-hcC-CcEEEEe-cCcc
Q 027945           97 ---------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG--VDMDFLSMA----LK-VAS-QAVYSLH-KTST  158 (216)
Q Consensus        97 ---------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~--~~~~~l~~~----~~-~~~-~~~~~~~-~~~~  158 (216)
                               +++++++|+.+.....  .++||+||+||||......  ......+..    +- ..+ -.++... ...+
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~~~--~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG  253 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCRDN--NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG  253 (1082)
T ss_pred             ccccccccccEEEEECchhhhcccc--CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence                     5899999998765321  1249999999999876321  111111100    00 000 0111100 1222


Q ss_pred             ---HHHHHHHHhhhcCCccceEEEEEeecCCcccc--ccceeeeeEEEEEEEEEe
Q 027945          159 ---REHVKKAALRDFNASSAEVLCELRYDVPQLYK--FHKKKEVDIAVDLWRFVP  208 (216)
Q Consensus       159 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  208 (216)
                         -..+...+.+.|+ ++|.++.|+++...+.+.  +... .+...+.+|+.+.
T Consensus       254 L~~yr~i~~~a~~~L~-pgG~l~lEiG~~q~~~v~~~l~~~-~gf~~~~~~~~~~  306 (1082)
T PLN02672        254 LGLIARAVEEGISVIK-PMGIMIFNMGGRPGQAVCERLFER-RGFRITKLWQTKI  306 (1082)
T ss_pred             HHHHHHHHHHHHHhcc-CCCEEEEEECccHHHHHHHHHHHH-CCCCeeEEeeehh
Confidence               2334455557888 999999999987765543  3322 2233455676653

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=2.7e-13  Score=115.19  Aligned_cols=128  Identities=24%  Similarity=0.374  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      |.+..+.++.+-..+.++.....++.++|++||||.+++.+++ +..+|+|+|+++++++-|+.|++.||+ +.+|+++-
T Consensus       361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq  439 (534)
T KOG2187|consen  361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ  439 (534)
T ss_pred             hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence            3444445555555555665667788999999999999999999 577999999999999999999999999 89999996


Q ss_pred             ccccccccc--CCCccc-EEEEcCCCCCCCCCCCHHHHHHHHhhc--CCcEEEEecCcc
Q 027945          105 IRNLEWRVC--SVGHVD-TVVMNPPFGTRKKGVDMDFLSMALKVA--SQAVYSLHKTST  158 (216)
Q Consensus       105 ~~~~~~~~~--~~~~fD-~v~~npp~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~  158 (216)
                      +++......  ..++-+ +++.|||    +.+.+..+++.+.+..  +..+|++|++.+
T Consensus       440 aE~~~~sl~~~~~~~~~~v~iiDPp----R~Glh~~~ik~l~~~~~~~rlvyvSCn~~t  494 (534)
T KOG2187|consen  440 AEDLFPSLLTPCCDSETLVAIIDPP----RKGLHMKVIKALRAYKNPRRLVYVSCNPHT  494 (534)
T ss_pred             hhhccchhcccCCCCCceEEEECCC----cccccHHHHHHHHhccCccceEEEEcCHHH
Confidence            666443331  212355 8889999    8999999998877764  369999999987

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.48  E-value=2.8e-13  Score=110.07  Aligned_cols=114  Identities=22%  Similarity=0.304  Sum_probs=87.2

Q ss_pred             hHHHHHhccCCCCCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHH
Q 027945            5 QLESVLGDLEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS   83 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~   83 (216)
                      .+.+.+....  .++...+++ |.+++.+...++..+    ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+
T Consensus         4 ~~~~~l~~~~--~~~~k~~gq~fl~~~~i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~   76 (272)
T PRK00274          4 RTRELLERYG--HRAKKSLGQNFLIDENILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDL   76 (272)
T ss_pred             hHHHHHHHcC--CCCCcccCcCcCCCHHHHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHH
Confidence            3444444332  356667777 777777777666654    334678999999999999999998765 99999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           84 LELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        84 ~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ++.++.++..  .+++++++|+.+.......   +|.|++||||+..
T Consensus        77 ~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~---~~~vv~NlPY~is  118 (272)
T PRK00274         77 APILAETFAE--DNLTIIEGDALKVDLSELQ---PLKVVANLPYNIT  118 (272)
T ss_pred             HHHHHHhhcc--CceEEEEChhhcCCHHHcC---cceEEEeCCccch
Confidence            9999988743  3699999999987655412   5999999999764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.47  E-value=4.5e-13  Score=108.10  Aligned_cols=101  Identities=20%  Similarity=0.314  Sum_probs=81.6

Q ss_pred             Ccccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 027945           19 PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD   97 (216)
Q Consensus        19 ~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~   97 (216)
                      +..+++| |-..+.+...++..+    ...++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++.++... .+
T Consensus         3 ~~k~~GQnfl~d~~~~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~-~~   76 (258)
T PRK14896          3 MNKKLGQHFLIDDRVVDRIVEYA----EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA-GN   76 (258)
T ss_pred             CCCcCCccccCCHHHHHHHHHhc----CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC-CC
Confidence            4556666 556777777777654    33467899999999999999999874 59999999999999999887652 27


Q ss_pred             eEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ++++++|+.+.....     ||.|++||||+..
T Consensus        77 v~ii~~D~~~~~~~~-----~d~Vv~NlPy~i~  104 (258)
T PRK14896         77 VEIIEGDALKVDLPE-----FNKVVSNLPYQIS  104 (258)
T ss_pred             EEEEEeccccCCchh-----ceEEEEcCCcccC
Confidence            999999999876543     8999999999854

>PLN02244 tocopherol O-methyltransferase

Probab=99.47  E-value=2.2e-12  Score=108.03  Aligned_cols=111  Identities=21%  Similarity=0.149  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhhcCC-----CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           32 IASRMLYTAENSFGD-----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~-----~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      .+..++..++.....     .++.+|||+|||+|.++..+++....+|+|+|+++.+++.++.+++..+.  +++++++|
T Consensus        97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D  176 (340)
T PLN02244         97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD  176 (340)
T ss_pred             HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence            344555555555443     56789999999999999999986445999999999999999999988776  69999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+.++.++.   ||+|++.-.+++..  ....+++++.+.++
T Consensus       177 ~~~~~~~~~~---FD~V~s~~~~~h~~--d~~~~l~e~~rvLk  214 (340)
T PLN02244        177 ALNQPFEDGQ---FDLVWSMESGEHMP--DKRKFVQELARVAA  214 (340)
T ss_pred             cccCCCCCCC---ccEEEECCchhccC--CHHHHHHHHHHHcC
Confidence            9988766555   99999977665542  23467777777765

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=1.9e-12  Score=104.10  Aligned_cols=114  Identities=21%  Similarity=0.228  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      |-.+-+...+..+...+...+|.+|||+|||-|.+++.+|+.-..+|+|+++|+...+.+++.++..|+  ++++...|.
T Consensus        52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~  131 (283)
T COG2230          52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY  131 (283)
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc
Confidence            345667778888888888899999999999999999999987545999999999999999999999998  699999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .++..   .   ||.|++--.|.+........+++.+.+.++
T Consensus       132 rd~~e---~---fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~  167 (283)
T COG2230         132 RDFEE---P---FDRIVSVGMFEHVGKENYDDFFKKVYALLK  167 (283)
T ss_pred             ccccc---c---cceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence            87644   3   999999999988877778888888888775

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.46  E-value=1.4e-12  Score=99.74  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ...++.++||+|||.|..++.+|+.|. .|+++|+|+.+++.++..++..+++++..+.|+.+..... .   ||+|++.
T Consensus        27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~-~---yD~I~st  101 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE-E---YDFIVST  101 (192)
T ss_dssp             TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT-T---EEEEEEE
T ss_pred             hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC-C---cCEEEEE
Confidence            345678999999999999999999888 8999999999999999999888889999999998877654 5   9999987


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      -.++..........++.+.....
T Consensus       102 ~v~~fL~~~~~~~i~~~m~~~~~  124 (192)
T PF03848_consen  102 VVFMFLQRELRPQIIENMKAATK  124 (192)
T ss_dssp             SSGGGS-GGGHHHHHHHHHHTEE
T ss_pred             EEeccCCHHHHHHHHHHHHhhcC
Confidence            77777755555556666655544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.46  E-value=2.3e-12  Score=101.65  Aligned_cols=104  Identities=25%  Similarity=0.392  Sum_probs=76.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEE-
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFV-  101 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~-  101 (216)
                      .|..++++..++..+... ...++..+||+|||+|.+++.++.. +...|+++|.++.++..|.+|++.+++  .++++ 
T Consensus       127 RpETEE~V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~  205 (328)
T KOG2904|consen  127 RPETEEWVEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH  205 (328)
T ss_pred             CccHHHHHHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence            344455665555555432 3345668999999999999999863 667999999999999999999999987  56666 


Q ss_pred             ---EcccccccccccCCCcccEEEEcCCCCCCCC
Q 027945          102 ---QCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK  132 (216)
Q Consensus       102 ---~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~  132 (216)
                         ..|+..... . ..++.|++++||||...++
T Consensus       206 ~~me~d~~~~~~-l-~~~~~dllvsNPPYI~~dD  237 (328)
T KOG2904|consen  206 NIMESDASDEHP-L-LEGKIDLLVSNPPYIRKDD  237 (328)
T ss_pred             cccccccccccc-c-ccCceeEEecCCCcccccc
Confidence               444444322 1 3356999999999987643

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.46  E-value=6e-13  Score=108.92  Aligned_cols=104  Identities=21%  Similarity=0.292  Sum_probs=84.0

Q ss_pred             CCCccccccCC-CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945           17 SNPKVELEQYP-TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (216)
Q Consensus        17 ~~~~~~~~~~~-t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   95 (216)
                      .++..+.+|.+ +.+.+...++..+    ...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++...+
T Consensus         8 ~~~kk~~GQnFL~d~~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~   82 (294)
T PTZ00338          8 MVFNKKFGQHILKNPLVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSP   82 (294)
T ss_pred             cCcCCCCCccccCCHHHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcC
Confidence            35666777744 5666776666554    33477899999999999999999865 489999999999999999988765


Q ss_pred             C--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           96 L--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        96 ~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      .  +++++++|+.+....  .   ||.|++|+||+..
T Consensus        83 ~~~~v~ii~~Dal~~~~~--~---~d~VvaNlPY~Is  114 (294)
T PTZ00338         83 LASKLEVIEGDALKTEFP--Y---FDVCVANVPYQIS  114 (294)
T ss_pred             CCCcEEEEECCHhhhccc--c---cCEEEecCCcccC
Confidence            3  799999999886544  3   9999999999866

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.45  E-value=9.8e-13  Score=102.46  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=77.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|+.+..    ++++.++|+.+ +..+++   ||+|+++-
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~~~~~s---fD~V~~~~  113 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-PFKDNF---FDLVLTKG  113 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-CCCCCC---EEEEEECC
Confidence            35678999999999999999875 45699999999999999998753    46788899887 444434   99999999


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCCcEEE
Q 027945          126 PFGTRKKGVDMDFLSMALKVASQAVYS  152 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~~~~~~  152 (216)
                      .+++.........++++.+..++.+++
T Consensus       114 vL~hl~p~~~~~~l~el~r~~~~~v~i  140 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCSNRYILI  140 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhcCcEEEE
Confidence            887765445567888888887654443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.44  E-value=1.7e-11  Score=94.33  Aligned_cols=92  Identities=23%  Similarity=0.246  Sum_probs=70.5

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|++.++. +++++.+|+... ... .   ||+|++
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-~~~-~---~D~v~~  103 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-LPG-K---ADAIFI  103 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-cCc-C---CCEEEE
Confidence            3467899999999999999999763 46999999999999999999988876 689999987532 222 3   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +....     .....++.+.+.+.
T Consensus       104 ~~~~~-----~~~~~l~~~~~~Lk  122 (187)
T PRK08287        104 GGSGG-----NLTAIIDWSLAHLH  122 (187)
T ss_pred             CCCcc-----CHHHHHHHHHHhcC
Confidence            75422     22345666666654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.44  E-value=4.7e-12  Score=103.74  Aligned_cols=111  Identities=28%  Similarity=0.374  Sum_probs=79.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~  103 (216)
                      |.|+.+-...+....+..+ ..++.+|||+|||+|.+++.+++.|..+|+++|+|+.+++.|+.|+..+++  .+.+..+
T Consensus       138 FgtG~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~  216 (288)
T TIGR00406       138 FGTGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI  216 (288)
T ss_pred             ccCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence            5566565666655555442 346789999999999999999988877999999999999999999999887  4566666


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.....  .   ++||+|++|....     .....+.++.+..+
T Consensus       217 ~~~~~~--~---~~fDlVvan~~~~-----~l~~ll~~~~~~Lk  250 (288)
T TIGR00406       217 YLEQPI--E---GKADVIVANILAE-----VIKELYPQFSRLVK  250 (288)
T ss_pred             cccccc--C---CCceEEEEecCHH-----HHHHHHHHHHHHcC
Confidence            633222  2   2499999987522     12345555555554

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.43  E-value=4.1e-13  Score=92.95  Aligned_cols=93  Identities=26%  Similarity=0.353  Sum_probs=72.4

Q ss_pred             EEEecCCcchHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE-cCC
Q 027945           52 VADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM-NPP  126 (216)
Q Consensus        52 vLD~g~G~G~~~~~l~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~-npp  126 (216)
                      |||+|||+|..+..+++..    ..+++++|+|+.+++.++++....+.+++++++|+.+++...+.   ||+|++ ..+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~---~D~v~~~~~~   77 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGK---FDLVVCSGLS   77 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSS---EEEEEE-TTG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCC---eeEEEEcCCc
Confidence            7999999999999999752    26999999999999999999988777899999999997765545   999999 555


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..+.....+++++.+.++
T Consensus        78 ~~~~~~~~~~~ll~~~~~~l~   98 (101)
T PF13649_consen   78 LHHLSPEELEALLRRIARLLR   98 (101)
T ss_dssp             GGGSSHHHHHHHHHHHHHTEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhC
Confidence            666655555666666665543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.43  E-value=1.7e-13  Score=111.07  Aligned_cols=139  Identities=24%  Similarity=0.275  Sum_probs=86.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..+++|||++|=||.+++.++..|+.+|+++|.|..+++.+++|++.|++   +++++.+|++++.......++||+||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            36789999999999999999988888999999999999999999999987   689999999986643223346999999


Q ss_pred             cCCCCCCCCCC----CHHHHHHHHhhcC--CcEE-EEecCc-cHHHHHHHHhhhcCCccceEEEEEeecCCccc
Q 027945          124 NPPFGTRKKGV----DMDFLSMALKVAS--QAVY-SLHKTS-TREHVKKAALRDFNASSAEVLCELRYDVPQLY  189 (216)
Q Consensus       124 npp~~~~~~~~----~~~~l~~~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  189 (216)
                      |||-.......    +...+..+.+...  +.++ .+|.+. +.+.+.+.+.+. . ...+++  ..+..|+.+
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~-a-~~~~~~--~~~~~p~df  271 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEA-A-REVEFI--ERLGQPPDF  271 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHH-H-HHCEEE--EEEE-----
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHh-C-ccceEe--eeecccccc
Confidence            99976553322    2344556666554  3333 334333 245555555222 2 344444  334445544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.43  E-value=9e-12  Score=102.83  Aligned_cols=120  Identities=23%  Similarity=0.266  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc------CCCeEEEEcc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------ELDIDFVQCD  104 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~d  104 (216)
                      .....++..+... ...++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.++.+++..      ..++++..+|
T Consensus       128 ~~v~~~l~~l~~~-~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        128 QTVEKVLLWLAED-GSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHHhc-CCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            3444455444321 134578999999999999999998765 9999999999999999998764      1257888888


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST  158 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (216)
                      +.+.   .+.   ||+|++.-.+++.........++.+.+..++.+++.+.+.+
T Consensus       206 l~~l---~~~---fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~  253 (315)
T PLN02585        206 LESL---SGK---YDTVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAPKT  253 (315)
T ss_pred             hhhc---CCC---cCEEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcc
Confidence            7543   224   99999876655443333334556666656678888887765

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.42  E-value=2.1e-12  Score=105.83  Aligned_cols=95  Identities=23%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|..++.+++.|. +|+|+|+|+.+++.++.+++.+++++++...|+...... ..   ||+|++...+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~-~~---fD~I~~~~vl  194 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQ-EE---YDFILSTVVL  194 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccccc-CC---ccEEEEcchh
Confidence            456999999999999999998775 999999999999999999998888888888898765442 24   9999999888


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.........+++++.+..+
T Consensus       195 ~~l~~~~~~~~l~~~~~~Lk  214 (287)
T PRK12335        195 MFLNRERIPAIIKNMQEHTN  214 (287)
T ss_pred             hhCCHHHHHHHHHHHHHhcC
Confidence            76644444566777666654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.42  E-value=5.9e-12  Score=98.97  Aligned_cols=86  Identities=15%  Similarity=0.087  Sum_probs=69.7

Q ss_pred             HHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCC
Q 027945           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~  115 (216)
                      .+...+...++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|+++++.++. +++++++|+.+....... 
T Consensus        68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~-  146 (215)
T TIGR00080        68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP-  146 (215)
T ss_pred             HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC-
Confidence            33333345678899999999999999999763  24699999999999999999999887 799999999875443334 


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                        ||+|+++++.
T Consensus       147 --fD~Ii~~~~~  156 (215)
T TIGR00080       147 --YDRIYVTAAG  156 (215)
T ss_pred             --CCEEEEcCCc
Confidence              9999998763

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.42  E-value=5.1e-12  Score=101.87  Aligned_cols=125  Identities=21%  Similarity=0.138  Sum_probs=97.6

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhh-cCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~-~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~   81 (216)
                      +++|++.+.++.+|+++........+..++.+..-+..+.. +.+..+++|||+|||+|..+..++.+|+..|+|+|.++
T Consensus        69 ~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~  148 (315)
T PF08003_consen   69 RQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP  148 (315)
T ss_pred             HHHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence            67899999999999999999988888888888777776654 45789999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCC
Q 027945           82 DSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        82 ~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~  131 (216)
                      ..+-+.+...+..|.  .+......+++++. .+.   ||+|+|=..+++.+
T Consensus       149 lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~---FDtVF~MGVLYHrr  196 (315)
T PF08003_consen  149 LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA---FDTVFSMGVLYHRR  196 (315)
T ss_pred             HHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCC---cCEEEEeeehhccC
Confidence            877665544444443  23333356666655 335   99999866666653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.42  E-value=1.4e-12  Score=107.55  Aligned_cols=85  Identities=21%  Similarity=0.232  Sum_probs=63.4

Q ss_pred             CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhc-CC--CeEEEE-cccccccccc-cCCCcccEE
Q 027945           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQ-CDIRNLEWRV-CSVGHVDTV  121 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~-~d~~~~~~~~-~~~~~fD~v  121 (216)
                      .+.++||||||+|.+...++. ....+++|+|+|+.+++.|+.|++.| ++  ++++++ .|........ ...++||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999988777664 34569999999999999999999999 67  577754 3333322111 112359999


Q ss_pred             EEcCCCCCCCC
Q 027945          122 VMNPPFGTRKK  132 (216)
Q Consensus       122 ~~npp~~~~~~  132 (216)
                      +|||||+....
T Consensus       194 vcNPPf~~s~~  204 (321)
T PRK11727        194 LCNPPFHASAA  204 (321)
T ss_pred             EeCCCCcCcch
Confidence            99999998743

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.42  E-value=1.6e-12  Score=104.83  Aligned_cols=106  Identities=22%  Similarity=0.249  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      ..........++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+.+      +++++++|+.++
T Consensus        11 ~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~   84 (255)
T PRK14103         11 ADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDW   84 (255)
T ss_pred             HhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhC
Confidence            3444444555555555567789999999999999999976 345999999999999999764      478899999876


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .. ...   ||+|+++..+++..  .....++++.+.++
T Consensus        85 ~~-~~~---fD~v~~~~~l~~~~--d~~~~l~~~~~~Lk  117 (255)
T PRK14103         85 KP-KPD---TDVVVSNAALQWVP--EHADLLVRWVDELA  117 (255)
T ss_pred             CC-CCC---ceEEEEehhhhhCC--CHHHHHHHHHHhCC
Confidence            43 224   99999999998763  23566777777665

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.42  E-value=5.2e-12  Score=98.34  Aligned_cols=99  Identities=16%  Similarity=0.192  Sum_probs=74.4

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc-ccccccccCCCcccEEEEc
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI-RNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~-~~~~~~~~~~~~fD~v~~n  124 (216)
                      ++.+|||+|||+|..+..+++. +..+++++|+++.+++.|+.+++.++. +++++++|+ ..+.... ..+.||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~-~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF-PDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-CccccceEEEE
Confidence            5679999999999999999875 445899999999999999999988876 799999999 5444111 12239999997


Q ss_pred             CCCCCC------CCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTR------KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~------~~~~~~~~l~~~~~~~~  147 (216)
                      .|....      .......+++++.+.++
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk  147 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLK  147 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcC
Confidence            553221      11124567888877765

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.41  E-value=5.8e-12  Score=99.23  Aligned_cols=107  Identities=23%  Similarity=0.264  Sum_probs=82.3

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++...+.  ++++.++|+...+   .+   ||+|++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~---fD~ii~  125 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GE---FDIVVC  125 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CC---cCEEEE
Confidence            34678999999999999999998655 999999999999999999987765  6899999998765   24   999997


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccH
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR  159 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  159 (216)
                      .-.+.+.........++++.+..++.+++.+.+.+.
T Consensus       126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~  161 (219)
T TIGR02021       126 MDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTA  161 (219)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCch
Confidence            544433322233456677776666677777776653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.41  E-value=4.2e-12  Score=101.84  Aligned_cols=96  Identities=19%  Similarity=0.257  Sum_probs=78.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|+.++..++.  +++++++|+.+.+..  .   +|+|
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~---~D~v  129 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--N---ASMV  129 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--C---CCEE
Confidence            46679999999999999888862   456999999999999999999987765  689999999887654  3   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..++..........++++.+.++
T Consensus       130 v~~~~l~~l~~~~~~~~l~~i~~~Lk  155 (247)
T PRK15451        130 VLNFTLQFLEPSERQALLDKIYQGLN  155 (247)
T ss_pred             ehhhHHHhCCHHHHHHHHHHHHHhcC
Confidence            99988877654444567777777765

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.41  E-value=3.6e-12  Score=105.95  Aligned_cols=94  Identities=32%  Similarity=0.461  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCC-------------------------------------
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-------------------------------------   72 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~-------------------------------------   72 (216)
                      +.+++.|+...    ...++..++|+-||+|.+.++.|..+..                                     
T Consensus       177 etLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         177 ETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             HHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            44555555443    3346679999999999999999976521                                     


Q ss_pred             ---eEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           73 ---QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        73 ---~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                         .++|+|+|+.+++.|+.|++..|+  .++|.++|+..+......   +|+||+||||+..
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~---~gvvI~NPPYGeR  312 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEE---YGVVISNPPYGER  312 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCc---CCEEEeCCCcchh
Confidence               377999999999999999999999  599999999987766334   9999999999987

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.41  E-value=2.7e-12  Score=103.14  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      .++..+...++..+...+..+|||+|||+|.++..+++.+ .+|+++|+++.+++.++.+..    ...++++|+...+.
T Consensus        25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~   99 (251)
T PRK10258         25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPL   99 (251)
T ss_pred             HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcC
Confidence            3455555555555444456799999999999999998865 499999999999999988753    24678999988766


Q ss_pred             cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          111 RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       111 ~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+.+   ||+|+++.+++...  .....+.++.+.++
T Consensus       100 ~~~~---fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk  131 (251)
T PRK10258        100 ATAT---FDLAWSNLAVQWCG--NLSTALRELYRVVR  131 (251)
T ss_pred             CCCc---EEEEEECchhhhcC--CHHHHHHHHHHHcC
Confidence            5545   99999998887542  34467777777765

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.40  E-value=2.9e-11  Score=91.09  Aligned_cols=126  Identities=24%  Similarity=0.258  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~  105 (216)
                      |-+++....|..    +.+.++.+++|+|||||.++++++.. +..+|+++|-++++++..++|++..|. +++++.+|+
T Consensus        18 TK~EIRal~ls~----L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A   93 (187)
T COG2242          18 TKEEIRALTLSK----LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA   93 (187)
T ss_pred             cHHHHHHHHHHh----hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc
Confidence            445555544443    35678899999999999999999954 467999999999999999999999998 899999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      -+.......   ||.||..-.      ......++.+...+++..-++.+.-+.+-.....
T Consensus        94 p~~L~~~~~---~daiFIGGg------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~  145 (187)
T COG2242          94 PEALPDLPS---PDAIFIGGG------GNIEEILEAAWERLKPGGRLVANAITLETLAKAL  145 (187)
T ss_pred             hHhhcCCCC---CCEEEECCC------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHH
Confidence            987765434   999998643      3444566666665554334444444444333333

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.40  E-value=1.6e-12  Score=101.26  Aligned_cols=105  Identities=24%  Similarity=0.334  Sum_probs=82.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||-|.++..+|+.|. .|+|+|+++.+++.|+..+..+++++++.+..++++....++   ||+|+|.=.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~---FDvV~cmEV  133 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQ---FDVVTCMEV  133 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCC---ccEEEEhhH
Confidence            5889999999999999999999885 999999999999999999999998888999999887665434   999999666


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945          127 FGTRKKGVDMDFLSMALKVAS--QAVYSLHKTS  157 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~  157 (216)
                      ..+...  ...+++.+.+..+  +.++++.-..
T Consensus       134 lEHv~d--p~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         134 LEHVPD--PESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             HHccCC--HHHHHHHHHHHcCCCcEEEEecccc
Confidence            655422  2235666655544  3555554433

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.40  E-value=4.4e-12  Score=104.98  Aligned_cols=95  Identities=18%  Similarity=0.220  Sum_probs=75.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.+.+..+.  +++++++|+.+++...+.   ||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~---FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRK---FDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCC---CCEEEEh
Confidence            4567999999999999999998665 999999999999999988766543  689999999887654434   9999987


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      -.+++..  ....+++++.+.++
T Consensus       206 ~vLeHv~--d~~~~L~~l~r~Lk  226 (322)
T PLN02396        206 EVIEHVA--NPAEFCKSLSALTI  226 (322)
T ss_pred             hHHHhcC--CHHHHHHHHHHHcC
Confidence            6666553  23467777776654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.40  E-value=1.3e-11  Score=99.15  Aligned_cols=105  Identities=31%  Similarity=0.441  Sum_probs=73.2

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC--eEEEEc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC  103 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~  103 (216)
                      |.|+.+-...++...+.. ...++.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|++|++.+++.  +.+..+
T Consensus        98 fgtg~h~tt~~~l~~l~~-~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~  176 (250)
T PRK00517         98 FGTGTHPTTRLCLEALEK-LVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG  176 (250)
T ss_pred             cCCCCCHHHHHHHHHHHh-hcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC
Confidence            445554444444444433 23467899999999999999988878768999999999999999999988762  333322


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |.        .   ||+|++|....     .....+.++.+.++
T Consensus       177 ~~--------~---fD~Vvani~~~-----~~~~l~~~~~~~Lk  204 (250)
T PRK00517        177 DL--------K---ADVIVANILAN-----PLLELAPDLARLLK  204 (250)
T ss_pred             CC--------C---cCEEEEcCcHH-----HHHHHHHHHHHhcC
Confidence            21        3   99999986421     12345566666654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.39  E-value=8.8e-12  Score=100.47  Aligned_cols=95  Identities=20%  Similarity=0.283  Sum_probs=76.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccc-cccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW-RVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++++...+.  +++++++|+.+... ....   ||+|++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~---fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP---VDLILF  118 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC---CCEEEe
Confidence            4567999999999999999999765 999999999999999999988776  68999999987642 2224   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.++++...  ....++++.+.++
T Consensus       119 ~~vl~~~~~--~~~~l~~~~~~Lk  140 (255)
T PRK11036        119 HAVLEWVAD--PKSVLQTLWSVLR  140 (255)
T ss_pred             hhHHHhhCC--HHHHHHHHHHHcC
Confidence            888766532  2356777777655

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.39  E-value=2.2e-12  Score=87.49  Aligned_cols=88  Identities=28%  Similarity=0.357  Sum_probs=69.1

Q ss_pred             EEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCC
Q 027945           53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK  132 (216)
Q Consensus        53 LD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~  132 (216)
                      ||+|||+|..+..+++.+..+++++|+++.+++.++++....  ++.+.++|+.++++.+.+   ||+|+++-.+++.  
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~s---fD~v~~~~~~~~~--   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--GVSFRQGDAEDLPFPDNS---FDVVFSNSVLHHL--   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--TEEEEESBTTSSSS-TT----EEEEEEESHGGGS--
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--CchheeehHHhCcccccc---ccccccccceeec--
Confidence            899999999999999986669999999999999999998764  356999999999887766   9999998777665  


Q ss_pred             CCCHHHHHHHHhhcC
Q 027945          133 GVDMDFLSMALKVAS  147 (216)
Q Consensus       133 ~~~~~~l~~~~~~~~  147 (216)
                      ......++++.+.++
T Consensus        74 ~~~~~~l~e~~rvLk   88 (95)
T PF08241_consen   74 EDPEAALREIYRVLK   88 (95)
T ss_dssp             SHHHHHHHHHHHHEE
T ss_pred             cCHHHHHHHHHHHcC
Confidence            344455666665554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3.4e-11  Score=89.69  Aligned_cols=81  Identities=27%  Similarity=0.432  Sum_probs=71.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .....++|+|||+|..+..+++.  +.....++|+||.+.+...+.++.|+.+++.++.|+....... +   .|++++|
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~-~---VDvLvfN  117 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNE-S---VDVLVFN  117 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccC-C---ccEEEEC
Confidence            34678999999999999999975  4568899999999999999999999999999999998876653 5   9999999


Q ss_pred             CCCCCCC
Q 027945          125 PPFGTRK  131 (216)
Q Consensus       125 pp~~~~~  131 (216)
                      |||....
T Consensus       118 PPYVpt~  124 (209)
T KOG3191|consen  118 PPYVPTS  124 (209)
T ss_pred             CCcCcCC
Confidence            9998763

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.38  E-value=1.8e-11  Score=94.70  Aligned_cols=117  Identities=20%  Similarity=0.211  Sum_probs=81.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ...++||+|||+|.++..+++. +..+++|+|+++.+++.|+.++...+. +++++++|+.+++......+.+|.|++|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            4468999999999999999975 456999999999999999999988877 79999999987542211112499999997


Q ss_pred             CCCCCCC------CCCHHHHHHHHhhcCCcEEEEecCccHHHHHH
Q 027945          126 PFGTRKK------GVDMDFLSMALKVASQAVYSLHKTSTREHVKK  164 (216)
Q Consensus       126 p~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      |-.....      -....+++.+.+.+++...+.+......+...
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~  140 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFED  140 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            6433211      12256777777776532223333334444433

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.38  E-value=1.5e-11  Score=97.94  Aligned_cols=135  Identities=17%  Similarity=0.136  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      ...+.++..+    ...+|.+|||.|.|+|.++..+++.  +.++|+..|..++.++.|++|++.+|.  ++++.+.|+.
T Consensus        27 kD~~~I~~~l----~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   27 KDISYILMRL----DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC  102 (247)
T ss_dssp             HHHHHHHHHT----T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred             chHHHHHHHc----CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence            3444444444    4459999999999999999999975  457999999999999999999999988  6999999997


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccce
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAE  176 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (216)
                      +.-+....+..+|.|+.|.|    .++..++.+.+++  .+....+++..++.+++.... ..|...++.
T Consensus       103 ~~g~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L--~~~gG~i~~fsP~ieQv~~~~-~~L~~~gf~  165 (247)
T PF08704_consen  103 EEGFDEELESDFDAVFLDLP----DPWEAIPHAKRAL--KKPGGRICCFSPCIEQVQKTV-EALREHGFT  165 (247)
T ss_dssp             CG--STT-TTSEEEEEEESS----SGGGGHHHHHHHE---EEEEEEEEEESSHHHHHHHH-HHHHHTTEE
T ss_pred             cccccccccCcccEEEEeCC----CHHHHHHHHHHHH--hcCCceEEEECCCHHHHHHHH-HHHHHCCCe
Confidence            53332212235999999999    6666666666665  134557777778888888777 444433433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.38  E-value=1e-11  Score=100.65  Aligned_cols=111  Identities=23%  Similarity=0.273  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      ..-+..++..+...+...+|.+|||+|||.|.+++.++++ |+ +|+|+.+|+...+.+++.++..|+  ++++...|..
T Consensus        44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~  122 (273)
T PF02353_consen   44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence            4467777888888877789999999999999999999987 66 999999999999999999999988  6999999998


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++..   .   ||.|++--.+.+........+++.+.+.++
T Consensus       123 ~~~~---~---fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk  157 (273)
T PF02353_consen  123 DLPG---K---FDRIVSIEMFEHVGRKNYPAFFRKISRLLK  157 (273)
T ss_dssp             G------S----SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred             ccCC---C---CCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence            7654   4   999999777777655566678888777764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.37  E-value=1.1e-11  Score=106.89  Aligned_cols=84  Identities=25%  Similarity=0.275  Sum_probs=69.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++.|++.+|.+++++++|+.+..... ..++||.|++
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~-~~~~fD~Vl~  319 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW-DGQPFDRILL  319 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc-ccCCCCEEEE
Confidence            45678899999999999999999764 369999999999999999999999888889999998653211 1124999999


Q ss_pred             cCCCCC
Q 027945          124 NPPFGT  129 (216)
Q Consensus       124 npp~~~  129 (216)
                      |||+..
T Consensus       320 D~Pcs~  325 (427)
T PRK10901        320 DAPCSA  325 (427)
T ss_pred             CCCCCc
Confidence            999864

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.37  E-value=4.1e-12  Score=107.53  Aligned_cols=97  Identities=24%  Similarity=0.259  Sum_probs=77.8

Q ss_pred             CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      +.+|||++||+|.+++.++.. +..+|+++|+|+.+++.++.|++.|++ ++++.++|+..+......   ||+|++|||
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~---fD~V~lDP~  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERK---FDVVDIDPF  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCC---CCEEEECCC
Confidence            468999999999999999864 556999999999999999999999988 578999999776542223   999999997


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC--CcEEEEe
Q 027945          127 FGTRKKGVDMDFLSMALKVAS--QAVYSLH  154 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~  154 (216)
                            +....++..++...+  +.+|+++
T Consensus       135 ------Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        135 ------GSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             ------CCcHHHHHHHHHHhcCCCEEEEEe
Confidence                  445678877555543  5677663

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.37  E-value=1.5e-11  Score=99.35  Aligned_cols=97  Identities=20%  Similarity=0.333  Sum_probs=76.4

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHh---cCC-CeEEEEcccccccccccCCCccc
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAAD---LEL-DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~---~~~-~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      ..++.+|||+|||+|.++..+++. + ..+|+|+|+++.|++.|+++...   ... +++++++|+.+++..+++   ||
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s---fD  147 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY---FD  147 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC---Ee
Confidence            356789999999999999998875 3 35999999999999999877542   112 689999999988776656   99


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|+++-.++...  .....++++.+.++
T Consensus       148 ~V~~~~~l~~~~--d~~~~l~ei~rvLk  173 (261)
T PLN02233        148 AITMGYGLRNVV--DRLKAMQEMYRVLK  173 (261)
T ss_pred             EEEEecccccCC--CHHHHHHHHHHHcC
Confidence            999977766552  34567888888765

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.36  E-value=4.6e-11  Score=85.20  Aligned_cols=96  Identities=22%  Similarity=0.261  Sum_probs=71.1

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++.+++.++. +++++.+|+.......  ..+||.|+
T Consensus        16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~v~   93 (124)
T TIGR02469        16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS--LPEPDRVF   93 (124)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--cCCCCEEE
Confidence            3345679999999999999999976 446999999999999999999988776 6889999876533221  12499999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++.+..     ....+++.+.+.+.
T Consensus        94 ~~~~~~-----~~~~~l~~~~~~Lk  113 (124)
T TIGR02469        94 IGGSGG-----LLQEILEAIWRRLR  113 (124)
T ss_pred             ECCcch-----hHHHHHHHHHHHcC
Confidence            865422     12345555555544

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.36  E-value=8.3e-12  Score=101.07  Aligned_cols=83  Identities=13%  Similarity=0.180  Sum_probs=69.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++. + ...|+++|+++.+++.+++|++.++. ++++++.|+..+......   ||+|
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~---fD~V  144 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPK---FDAI  144 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccC---CCEE
Confidence            3457789999999999999998864 2 45899999999999999999999987 789999998765443334   9999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++|||+...
T Consensus       145 l~D~Pcsg~  153 (264)
T TIGR00446       145 LLDAPCSGE  153 (264)
T ss_pred             EEcCCCCCC
Confidence            999998653

>PRK05785 hypothetical protein; Provisional

Probab=99.35  E-value=1.5e-11  Score=97.30  Aligned_cols=108  Identities=18%  Similarity=0.110  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      ....+...++..+....  .++.+|||+|||+|.++..+++....+|+|+|+++.|++.|+..       ...+++|+..
T Consensus        33 ~~~~wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~  103 (226)
T PRK05785         33 QDVRWRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEA  103 (226)
T ss_pred             CcHHHHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhh
Confidence            33455555555554321  23679999999999999999986334999999999999999864       2457899988


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCc
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQA  149 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~  149 (216)
                      +++.+.+   ||+|++....+..  ......++++.+.+++.
T Consensus       104 lp~~d~s---fD~v~~~~~l~~~--~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        104 LPFRDKS---FDVVMSSFALHAS--DNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCCCCCC---EEEEEecChhhcc--CCHHHHHHHHHHHhcCc
Confidence            8876656   9999998776543  33456788888777653

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.35  E-value=3.2e-11  Score=94.54  Aligned_cols=92  Identities=16%  Similarity=0.170  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      +.+.+...++..+    ...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++.++. +++++++|
T Consensus        60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd  135 (212)
T PRK13942         60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD  135 (212)
T ss_pred             CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence            3345555555443    4457889999999999999998875 3 35999999999999999999998887 79999999


Q ss_pred             cccccccccCCCcccEEEEcCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ..........   ||+|+++-.
T Consensus       136 ~~~~~~~~~~---fD~I~~~~~  154 (212)
T PRK13942        136 GTLGYEENAP---YDRIYVTAA  154 (212)
T ss_pred             cccCCCcCCC---cCEEEECCC
Confidence            8875544334   999998654

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.35  E-value=7.8e-12  Score=100.67  Aligned_cols=109  Identities=20%  Similarity=0.281  Sum_probs=84.7

Q ss_pred             Ccccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 027945           19 PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD   97 (216)
Q Consensus        19 ~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~   97 (216)
                      +...++| |.+.+.+...++..+    ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++.+... ..+
T Consensus         3 ~~k~~gq~fl~d~~i~~~i~~~~----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~   76 (253)
T TIGR00755         3 PRKSLGQNFLIDESVIQKIVEAA----NVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YER   76 (253)
T ss_pred             CCCCCCCccCCCHHHHHHHHHhc----CCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCc
Confidence            4556666 667777777776654    334678999999999999999998765 799999999999999988754 227


Q ss_pred             eEEEEcccccccccccCCCccc---EEEEcCCCCCCCCCCCHHHHHHHH
Q 027945           98 IDFVQCDIRNLEWRVCSVGHVD---TVVMNPPFGTRKKGVDMDFLSMAL  143 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~~~~fD---~v~~npp~~~~~~~~~~~~l~~~~  143 (216)
                      ++++++|+.+.+...     +|   +|++|+||+..     ...+.+.+
T Consensus        77 v~v~~~D~~~~~~~~-----~d~~~~vvsNlPy~i~-----~~il~~ll  115 (253)
T TIGR00755        77 LEVIEGDALKVDLPD-----FPKQLKVVSNLPYNIS-----SPLIFKLL  115 (253)
T ss_pred             EEEEECchhcCChhH-----cCCcceEEEcCChhhH-----HHHHHHHh
Confidence            899999999877653     66   99999998854     34555555

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.35  E-value=3.2e-11  Score=94.10  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCc
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      ..+...++.+|||+|||+|..+..+++. + .++|+++|+++.+++.|++|++.++.  +++++++|+.+.......   
T Consensus        66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~---  142 (205)
T PRK13944         66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP---  142 (205)
T ss_pred             HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC---
Confidence            3334457789999999999999888875 2 45999999999999999999998876  489999999875544334   


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      ||+|+++.+..
T Consensus       143 fD~Ii~~~~~~  153 (205)
T PRK13944        143 FDAIIVTAAAS  153 (205)
T ss_pred             ccEEEEccCcc
Confidence            99999987643

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.35  E-value=1.4e-11  Score=99.40  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=79.8

Q ss_pred             HHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCc
Q 027945           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      .++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+.+..    +++++.+|+.++.... .   
T Consensus        22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~~~-~---   93 (258)
T PRK01683         22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQPPQ-A---   93 (258)
T ss_pred             HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCCCC-C---
Confidence            3333434456789999999999999999975 45699999999999999998753    4788999987664332 4   


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          118 VDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      ||+|+++..+++..  .....++++.+.++ ++.+++
T Consensus        94 fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~  128 (258)
T PRK01683         94 LDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAV  128 (258)
T ss_pred             ccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEE
Confidence            99999999988763  34567888877765 444444

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.34  E-value=1.3e-10  Score=91.14  Aligned_cols=91  Identities=16%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~  107 (216)
                      .+.+...++.    .+...++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++++..+. +++++++|..+
T Consensus        63 ~p~~~~~l~~----~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  137 (212)
T PRK00312         63 QPYMVARMTE----LLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK  137 (212)
T ss_pred             cHHHHHHHHH----hcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence            3444444443    3344577899999999999999888764 4899999999999999999998887 69999999876


Q ss_pred             ccccccCCCcccEEEEcCCC
Q 027945          108 LEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~  127 (216)
                      .....+.   ||+|+++.+.
T Consensus       138 ~~~~~~~---fD~I~~~~~~  154 (212)
T PRK00312        138 GWPAYAP---FDRILVTAAA  154 (212)
T ss_pred             CCCcCCC---cCEEEEccCc
Confidence            4333234   9999998764

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.34  E-value=1.4e-11  Score=99.73  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=76.6

Q ss_pred             cCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           44 FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      +...++.+|||+|||+|..+..+++....+|+++|+++.+++.|+.+... ..++.+.++|+.+.+....+   ||+|++
T Consensus        48 l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~---FD~V~s  123 (263)
T PTZ00098         48 IELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENT---FDMIYS  123 (263)
T ss_pred             CCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCC---eEEEEE
Confidence            34567789999999999999988865345999999999999999998754 23689999999876655445   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ...+.+.........++++.+.++
T Consensus       124 ~~~l~h~~~~d~~~~l~~i~r~Lk  147 (263)
T PTZ00098        124 RDAILHLSYADKKKLFEKCYKWLK  147 (263)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHHcC
Confidence            766554432344567777777765

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.34  E-value=8.6e-12  Score=103.30  Aligned_cols=124  Identities=25%  Similarity=0.365  Sum_probs=84.9

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--------CCCeEEEEeCCHHHHHHHHHH
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      .....++|.||..++..|...+    ...++.+|+|++||+|.+.+.+.+.        ....++|+|+++.++..|+.|
T Consensus        21 ~~k~~G~~~TP~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n   96 (311)
T PF02384_consen   21 SRKKLGQFYTPREIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN   96 (311)
T ss_dssp             TTTSCGGC---HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred             hccccceeehHHHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence            3566789999999998777776    3346678999999999998888762        456899999999999999999


Q ss_pred             HHhcCC---CeEEEEcccccccccccCCCcccEEEEcCCCCCC--C-----------------CCCCHHHHHHHHhhcC
Q 027945           91 AADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR--K-----------------KGVDMDFLSMALKVAS  147 (216)
Q Consensus        91 ~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~--~-----------------~~~~~~~l~~~~~~~~  147 (216)
                      +...+.   ...+..+|.+...... ...+||+|++||||...  .                 ......|+..+++.+.
T Consensus        97 l~l~~~~~~~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk  174 (311)
T PF02384_consen   97 LLLHGIDNSNINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK  174 (311)
T ss_dssp             HHHTTHHCBGCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE
T ss_pred             hhhhccccccccccccccccccccc-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc
Confidence            877665   3468899987655432 12349999999999865  1                 0122357788887765

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.33  E-value=1e-10  Score=98.47  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=90.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ....+..+||+|||+|.+++.+|+. +...++|+|+++.+++.|..++..+++ ++.++++|+..+.... ..+.+|.|+
T Consensus       119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~-~~~s~D~I~  197 (390)
T PRK14121        119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELL-PSNSVEKIF  197 (390)
T ss_pred             cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhC-CCCceeEEE
Confidence            4456679999999999999999976 456999999999999999999998888 8999999997643221 223499999


Q ss_pred             EcCCCCCCCCCC----CHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          123 MNPPFGTRKKGV----DMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       123 ~npp~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ++.|..+.....    ...++..+.+.+.+...+.+.++..+++....
T Consensus       198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~  245 (390)
T PRK14121        198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSL  245 (390)
T ss_pred             EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHH
Confidence            998755442221    24678888888765555556666665655544

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.33  E-value=2e-11  Score=102.88  Aligned_cols=98  Identities=18%  Similarity=0.222  Sum_probs=80.2

Q ss_pred             CCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           49 NKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      +.+|||+.||+|..++.++++  |..+|+++|+|+.+++.++.|++.|+. ++++.++|+..+....  ..+||+|+.||
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDP  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDP  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCC
Confidence            358999999999999999987  678999999999999999999999988 6899999998876542  12499999999


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC--CcEEEEe
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS--QAVYSLH  154 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~--~~~~~~~  154 (216)
                       |+     ....++..+++...  +.+++.+
T Consensus       123 -fG-----s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       123 -FG-----TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             -CC-----CcHHHHHHHHHhcccCCEEEEEe
Confidence             43     33578888887664  4566653

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.33  E-value=1e-10  Score=90.82  Aligned_cols=98  Identities=19%  Similarity=0.410  Sum_probs=74.8

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcc
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHV  118 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~f  118 (216)
                      .+...++.+|||+|||+|.+++.+++. + ..+|+++|+++.+++.+++|++.+++  +++++.+|+.+.....  .++|
T Consensus        35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~--~~~~  112 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI--NEKF  112 (198)
T ss_pred             HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc--CCCC
Confidence            345568889999999999999999864 3 46999999999999999999998884  7899999987754321  1249


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          119 DTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       119 D~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |+|+++..     .......++.+.+.++
T Consensus       113 D~V~~~~~-----~~~~~~~l~~~~~~Lk  136 (198)
T PRK00377        113 DRIFIGGG-----SEKLKEIISASWEIIK  136 (198)
T ss_pred             CEEEECCC-----cccHHHHHHHHHHHcC
Confidence            99999653     1233456776666654

>TIGR00740 methyltransferase, putative

Probab=99.33  E-value=4e-11  Score=95.72  Aligned_cols=102  Identities=20%  Similarity=0.264  Sum_probs=80.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+++.+++.|++++...+.  +++++++|+.+.+..  .   +|+|
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~---~d~v  126 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--N---ASMV  126 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--C---CCEE
Confidence            36679999999999999999874   356899999999999999999887654  689999999887654  3   8999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +++-.+++.........++++.+.++ ++.+++
T Consensus       127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i  159 (239)
T TIGR00740       127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL  159 (239)
T ss_pred             eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            99888777644444567888887765 333333

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=99.32  E-value=9.2e-12  Score=110.07  Aligned_cols=109  Identities=25%  Similarity=0.335  Sum_probs=81.3

Q ss_pred             ccccCCCCHHHHHHHHHHHHhhcCC---CCCCEEEEecCCcchHHHHHHHcC---------CCeEEEEeCCHHHHHHHHH
Q 027945           22 ELEQYPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATLLG---------ADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        22 ~~~~~~t~~~~~~~~l~~~~~~~~~---~~~~~vLD~g~G~G~~~~~l~~~~---------~~~v~~~D~~~~~~~~a~~   89 (216)
                      +.++|.||..++..|+..+......   ....+|||+|||+|.+.+.++...         ..+++|+|+++.+++.++.
T Consensus         2 ~~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987         2 AYGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             CCcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            5689999999999999887643221   144699999999999998887532         1478999999999999999


Q ss_pred             HHHhcCC-CeEEEEccccccccc--ccCCCcccEEEEcCCCCCC
Q 027945           90 NAADLEL-DIDFVQCDIRNLEWR--VCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        90 ~~~~~~~-~~~~~~~d~~~~~~~--~~~~~~fD~v~~npp~~~~  130 (216)
                      ++...+. .+.+.+.|.......  ....++||+|++||||...
T Consensus        82 ~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        82 LLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHhhcCCCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence            9887653 456666665543211  1112359999999999864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=5.5e-11  Score=93.45  Aligned_cols=111  Identities=26%  Similarity=0.282  Sum_probs=89.4

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ...++.+|+|.|.|||+++..+++. + .++|+.+|+.++.++.|++|++..++  ++++..+|+.+..... .   ||+
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~---vDa  166 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-D---VDA  166 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-c---cCE
Confidence            4568999999999999999999964 3 57999999999999999999999887  4899999999877666 5   999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       121 v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      |+.|.|    .++..++.+.++++.+   ..+++..++.+++....
T Consensus       167 v~LDmp----~PW~~le~~~~~Lkpg---g~~~~y~P~veQv~kt~  205 (256)
T COG2519         167 VFLDLP----DPWNVLEHVSDALKPG---GVVVVYSPTVEQVEKTV  205 (256)
T ss_pred             EEEcCC----ChHHHHHHHHHHhCCC---cEEEEEcCCHHHHHHHH
Confidence            999999    5565555555555554   45555666766666665

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.31  E-value=6.8e-11  Score=102.51  Aligned_cols=82  Identities=20%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++.|++..|. +++++++|+....... .   ||+|
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~-~---fD~V  322 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEE-Q---PDAI  322 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCC-C---CCEE
Confidence            3457789999999999999888864  245999999999999999999999888 6899999998765322 4   9999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++|||+...
T Consensus       323 l~D~Pcsg~  331 (445)
T PRK14904        323 LLDAPCTGT  331 (445)
T ss_pred             EEcCCCCCc
Confidence            999998543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.31  E-value=1e-10  Score=92.62  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=79.2

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|+.+....+.  ++.+..+|+..   ....   ||+|++
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~---fD~v~~  133 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGR---FDTVVC  133 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCC---cCEEEE
Confidence            35678999999999999999998765 799999999999999999887766  68899999432   2224   999998


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTST  158 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (216)
                      .-.+++.........++.+.+..++.+++++.+.+
T Consensus       134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~  168 (230)
T PRK07580        134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYT  168 (230)
T ss_pred             cchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence            77765543333445566666665666666665544

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.30  E-value=1.8e-11  Score=94.55  Aligned_cols=91  Identities=27%  Similarity=0.382  Sum_probs=67.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++.+|+|++||.|.+++.+++. ....|+++|++|.+++.+++|++.|++  .+.++++|+.++.. ...   ||.|++
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~---~drvim  175 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGK---FDRVIM  175 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT----EEEEEE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccc---cCEEEE
Confidence            47889999999999999999984 356899999999999999999999998  58999999998876 324   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |.|..      ...++..++...+
T Consensus       176 ~lp~~------~~~fl~~~~~~~~  193 (200)
T PF02475_consen  176 NLPES------SLEFLDAALSLLK  193 (200)
T ss_dssp             --TSS------GGGGHHHHHHHEE
T ss_pred             CChHH------HHHHHHHHHHHhc
Confidence            99943      3367777777655

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=4.1e-11  Score=103.91  Aligned_cols=83  Identities=24%  Similarity=0.344  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..++.+++.  +.++|+++|+++.+++.+++|++.+|+ +++++++|+.+......  ++||+|
T Consensus       247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~--~~fD~V  324 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA--EKFDKI  324 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc--ccCCEE
Confidence            3456789999999999999999975  356999999999999999999999987 68999999987642211  239999


Q ss_pred             EEcCCCCC
Q 027945          122 VMNPPFGT  129 (216)
Q Consensus       122 ~~npp~~~  129 (216)
                      ++|||+..
T Consensus       325 l~D~Pcsg  332 (444)
T PRK14902        325 LVDAPCSG  332 (444)
T ss_pred             EEcCCCCC
Confidence            99999754

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1e-10  Score=90.02  Aligned_cols=93  Identities=20%  Similarity=0.219  Sum_probs=77.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      +-..+++...|+..+    ...++.+|||||||||..+..+++... +|+.+|.++...+.|+.|++..|. ++.++++|
T Consensus        54 tis~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD  128 (209)
T COG2518          54 TISAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGD  128 (209)
T ss_pred             eecCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence            334466777666655    456889999999999999999999754 999999999999999999999999 89999999


Q ss_pred             cccccccccCCCcccEEEEcCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ..........   ||.|+..-.
T Consensus       129 G~~G~~~~aP---yD~I~Vtaa  147 (209)
T COG2518         129 GSKGWPEEAP---YDRIIVTAA  147 (209)
T ss_pred             cccCCCCCCC---cCEEEEeec
Confidence            9886665445   999998544

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=8.3e-11  Score=101.41  Aligned_cols=83  Identities=20%  Similarity=0.268  Sum_probs=69.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccc-cccCCCcccE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RVCSVGHVDT  120 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~~~~~fD~  120 (216)
                      ...++.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++|++..|+ +++++++|+..+.. ..+.   ||.
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~---fD~  310 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDT---FDR  310 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhcc---CCE
Confidence            4457789999999999999999875  356999999999999999999999988 68999999987642 2223   999


Q ss_pred             EEEcCCCCCC
Q 027945          121 VVMNPPFGTR  130 (216)
Q Consensus       121 v~~npp~~~~  130 (216)
                      |++|||+...
T Consensus       311 Vl~DaPCsg~  320 (431)
T PRK14903        311 ILVDAPCTSL  320 (431)
T ss_pred             EEECCCCCCC
Confidence            9999999654

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.28  E-value=2.6e-10  Score=88.34  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|++.++. +++++.+|+.+.....  ...+|.++
T Consensus        37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~--~~~~d~v~  114 (196)
T PRK07402         37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL--APAPDRVC  114 (196)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC--CCCCCEEE
Confidence            3356789999999999999999864 346999999999999999999988877 7899999986532211  11278887


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+..      ......++.+.+.++
T Consensus       115 ~~~~------~~~~~~l~~~~~~Lk  133 (196)
T PRK07402        115 IEGG------RPIKEILQAVWQYLK  133 (196)
T ss_pred             EECC------cCHHHHHHHHHHhcC
Confidence            7532      122466777776655

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.27  E-value=1.6e-10  Score=91.86  Aligned_cols=113  Identities=19%  Similarity=0.203  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~  108 (216)
                      ...+|..+...   .++++|||+|||+|..++.+++.  +.++|+++|+++++++.|++|++.+|+  +++++.+|+.+.
T Consensus        56 ~g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~  132 (234)
T PLN02781         56 EGLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA  132 (234)
T ss_pred             HHHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence            34444444432   36779999999999988888764  356999999999999999999999988  699999999886


Q ss_pred             cccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          109 EWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       109 ~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      ....   ...++||+|++|..     +..+...+..+.+..+ +++.++
T Consensus       133 L~~l~~~~~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        133 LDQLLNNDPKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             HHHHHhCCCCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE
Confidence            4331   01235999999865     3445566777777665 444443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.27  E-value=1.1e-10  Score=102.24  Aligned_cols=97  Identities=18%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ..++.+|||+|||+|..++.+++....+|+|+|+++.+++.|+.+....+.++++.++|+...+.+...   ||+|++.-
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~---fD~I~s~~  340 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS---FDVIYSRD  340 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC---EEEEEECC
Confidence            346779999999999999999975445999999999999999998765544789999999887654434   99999987


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+.+..  .....++++.+.++
T Consensus       341 ~l~h~~--d~~~~l~~~~r~Lk  360 (475)
T PLN02336        341 TILHIQ--DKPALFRSFFKWLK  360 (475)
T ss_pred             cccccC--CHHHHHHHHHHHcC
Confidence            776653  23466777777765

>PRK06922 hypothetical protein; Provisional

Probab=99.27  E-value=2.9e-11  Score=106.91  Aligned_cols=98  Identities=19%  Similarity=0.232  Sum_probs=76.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc--ccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+.+....+.++.++++|+.+++  +...+   ||+|++
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeS---FDvVVs  493 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKES---VDTIVY  493 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCC---EEEEEE
Confidence            36789999999999999888864 4569999999999999999988766667888999998765  33334   999999


Q ss_pred             cCCCCCCC-----------CCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRK-----------KGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~-----------~~~~~~~l~~~~~~~~  147 (216)
                      +++++...           .......++++.+.++
T Consensus       494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK  528 (677)
T PRK06922        494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK  528 (677)
T ss_pred             chHHHhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence            99887431           1223567777777765

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.27  E-value=1e-10  Score=95.06  Aligned_cols=97  Identities=24%  Similarity=0.266  Sum_probs=77.7

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ..++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++....+. +++++.+|+.+++..+..   ||+|+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~---fD~Vi  151 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNS---VDVII  151 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCc---eeEEE
Confidence            347789999999999988877754 4 34899999999999999999988776 789999999887654434   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++..++...  .....++++.+.++
T Consensus       152 ~~~v~~~~~--d~~~~l~~~~r~Lk  174 (272)
T PRK11873        152 SNCVINLSP--DKERVFKEAFRVLK  174 (272)
T ss_pred             EcCcccCCC--CHHHHHHHHHHHcC
Confidence            998876542  33467777877765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.27  E-value=3.2e-11  Score=109.75  Aligned_cols=101  Identities=27%  Similarity=0.407  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-----------------------------------
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-----------------------------------   70 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-----------------------------------   70 (216)
                      -|..+.+++.||....+   ..++..++|++||+|.+.++.+...                                   
T Consensus       171 Apl~etlAaa~l~~a~w---~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~  247 (702)
T PRK11783        171 APLKENLAAAILLRSGW---PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER  247 (702)
T ss_pred             CCCcHHHHHHHHHHcCC---CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence            44456777777754422   1356799999999999999887521                                   


Q ss_pred             --------CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           71 --------ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        71 --------~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                              ..+++|+|+|+.+++.|+.|+..+|+  .+++.++|+.+..... ..++||+|++||||+..
T Consensus       248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        248 ARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGER  316 (702)
T ss_pred             HhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCc
Confidence                    12699999999999999999999998  4899999999876543 12349999999999876

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=9.7e-11  Score=101.23  Aligned_cols=85  Identities=24%  Similarity=0.266  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccccc-CCCcccE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVC-SVGHVDT  120 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~fD~  120 (216)
                      ...++.+|||+|||+|..+..+++.  +.++|+++|+++.+++.+++|++.+|. +++++++|+........ ..++||.
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence            4567889999999999999999875  245999999999999999999999998 78999999987652110 1124999


Q ss_pred             EEEcCCCCC
Q 027945          121 VVMNPPFGT  129 (216)
Q Consensus       121 v~~npp~~~  129 (216)
                      |++|||...
T Consensus       329 Vl~DaPCSg  337 (434)
T PRK14901        329 ILLDAPCSG  337 (434)
T ss_pred             EEEeCCCCc
Confidence            999999753

>PRK06202 hypothetical protein; Provisional

Probab=99.26  E-value=6.9e-11  Score=93.94  Aligned_cols=100  Identities=23%  Similarity=0.232  Sum_probs=73.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~----~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .++.+|||+|||+|.++..+++.    | ..+++|+|+++.+++.|+.+....+  +++...+....+..+.+   ||+|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~l~~~~~~---fD~V  133 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--VTFRQAVSDELVAEGER---FDVV  133 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--CeEEEEecccccccCCC---ccEE
Confidence            45679999999999998888752    3 3489999999999999998876544  44555555444433334   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVASQAVY  151 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~~~~~  151 (216)
                      +++..+++..+......++++.+..++.++
T Consensus       134 ~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~  163 (232)
T PRK06202        134 TSNHFLHHLDDAEVVRLLADSAALARRLVL  163 (232)
T ss_pred             EECCeeecCChHHHHHHHHHHHHhcCeeEE
Confidence            999999887554445788888888774333

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.26  E-value=1.5e-10  Score=98.30  Aligned_cols=108  Identities=20%  Similarity=0.216  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      -+...+..+...+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++.  +..+++..+|+.+.   
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---  225 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---
Confidence            3444555555555556788999999999999999997644499999999999999999885  34578888888654   


Q ss_pred             ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          112 VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       112 ~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+.   ||.|++...+++........+++++.+.++
T Consensus       226 ~~~---fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk  258 (383)
T PRK11705        226 NGQ---FDRIVSVGMFEHVGPKNYRTYFEVVRRCLK  258 (383)
T ss_pred             CCC---CCEEEEeCchhhCChHHHHHHHHHHHHHcC
Confidence            224   999999888776544334566777776665

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=6.2e-11  Score=94.41  Aligned_cols=103  Identities=21%  Similarity=0.284  Sum_probs=80.6

Q ss_pred             cccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 027945           20 KVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI   98 (216)
Q Consensus        20 ~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~   98 (216)
                      ..+++| |-........++..+    ...++.+|||+|+|.|+++..+++++. +|+++|+|+..++..++..... .++
T Consensus         5 ~K~~GQnFL~d~~v~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~-~n~   78 (259)
T COG0030           5 NKRLGQNFLIDKNVIDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY-DNL   78 (259)
T ss_pred             CCCcccccccCHHHHHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc-cce
Confidence            455666 555555555544443    444678999999999999999999765 8999999999999999987622 279


Q ss_pred             EEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +++++|+....+....  .++.|++|.||+-.
T Consensus        79 ~vi~~DaLk~d~~~l~--~~~~vVaNlPY~Is  108 (259)
T COG0030          79 TVINGDALKFDFPSLA--QPYKVVANLPYNIS  108 (259)
T ss_pred             EEEeCchhcCcchhhc--CCCEEEEcCCCccc
Confidence            9999999998877421  28999999999866

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.25  E-value=5.7e-11  Score=93.06  Aligned_cols=98  Identities=15%  Similarity=0.072  Sum_probs=72.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCeEEEEccccccccccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWRVC  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~~~~~d~~~~~~~~~  113 (216)
                      .++.+|||+|||.|..++.+|++|. +|+|+|+|+.+++.+......             .+.+++++++|+.++.... 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD-  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence            3567999999999999999999887 899999999999986432211             1226899999999876431 


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       .++||.|+-.-.+++........+++.+.+.++
T Consensus       111 -~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk  143 (213)
T TIGR03840       111 -LGPVDAVYDRAALIALPEEMRQRYAAHLLALLP  143 (213)
T ss_pred             -CCCcCEEEechhhccCCHHHHHHHHHHHHHHcC
Confidence             124999987666666655555566666666654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.24  E-value=1.7e-10  Score=95.99  Aligned_cols=109  Identities=17%  Similarity=0.096  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc
Q 027945           32 IASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  109 (216)
                      +...+...++..... .++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++....  +++++.+|+.+.+
T Consensus        96 ~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~i~gD~e~lp  173 (340)
T PLN02490         96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIIEGDAEDLP  173 (340)
T ss_pred             chHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--CCeEEeccHHhCC
Confidence            444444444443222 35679999999999999988865 4569999999999999999886532  5788999998876


Q ss_pred             ccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          110 WRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ...+.   ||+|+++..++...  .....++++.+.++
T Consensus       174 ~~~~s---FDvVIs~~~L~~~~--d~~~~L~e~~rvLk  206 (340)
T PLN02490        174 FPTDY---ADRYVSAGSIEYWP--DPQRGIKEAYRVLK  206 (340)
T ss_pred             CCCCc---eeEEEEcChhhhCC--CHHHHHHHHHHhcC
Confidence            65445   99999988876653  23456777777765

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.23  E-value=7e-11  Score=97.66  Aligned_cols=92  Identities=25%  Similarity=0.367  Sum_probs=79.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ..|.+|||++||.|.+++.+|+.+...|+++|+||.+++.+++|++.|++  .++++++|+.+.......   +|.|+++
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~---aDrIim~  263 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV---ADRIIMG  263 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc---CCEEEeC
Confidence            35899999999999999999998876799999999999999999999999  489999999998877545   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .|.      ...+++..+++...
T Consensus       264 ~p~------~a~~fl~~A~~~~k  280 (341)
T COG2520         264 LPK------SAHEFLPLALELLK  280 (341)
T ss_pred             CCC------cchhhHHHHHHHhh
Confidence            883      33467777766654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.23  E-value=1.5e-10  Score=99.88  Aligned_cols=85  Identities=21%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCe--EEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDI--DFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++.|++..|..+  .+..+|........ ..++||.|
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-~~~~fD~V  313 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-ENEQFDRI  313 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc-cccccCEE
Confidence            4567889999999999999999975 44699999999999999999999988754  44667765543210 11249999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++|||+...
T Consensus       314 llDaPcSg~  322 (426)
T TIGR00563       314 LLDAPCSAT  322 (426)
T ss_pred             EEcCCCCCC
Confidence            999998754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.23  E-value=9.8e-11  Score=92.90  Aligned_cols=93  Identities=26%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ..+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++.+...   ++.++.+|+.+.+.....   ||+|+++-
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~---fD~vi~~~  106 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLPLEDSS---FDLIVSNL  106 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCCCCCCc---eeEEEEhh
Confidence            345799999999999999999865 45789999999999999887652   578899999887655444   99999988


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+++..  .....++++.+..+
T Consensus       107 ~l~~~~--~~~~~l~~~~~~L~  126 (240)
T TIGR02072       107 ALQWCD--DLSQALSELARVLK  126 (240)
T ss_pred             hhhhcc--CHHHHHHHHHHHcC
Confidence            876652  23456677666654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.23  E-value=2.7e-10  Score=89.27  Aligned_cols=105  Identities=22%  Similarity=0.296  Sum_probs=84.5

Q ss_pred             cCCCCCCEEEEecCCcchHHHHHHHc-CC------CeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccc
Q 027945           44 FGDVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRV  112 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G~G~~~~~l~~~-~~------~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~  112 (216)
                      +.+.++.++||++||||.++..+.++ +.      .+|+.+|+||+++..++++....+.    .+.++.+|++++++++
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd  175 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD  175 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence            34567789999999999998888865 23      6999999999999999999977655    3899999999999988


Q ss_pred             cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      .+   ||...+  .|+-+......+.++++.+.++ +..|.+
T Consensus       176 ~s---~D~yTi--afGIRN~th~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  176 DS---FDAYTI--AFGIRNVTHIQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             Cc---ceeEEE--ecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence            77   999887  4555555566688999998876 444443

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.23  E-value=1.7e-10  Score=87.71  Aligned_cols=97  Identities=19%  Similarity=0.243  Sum_probs=68.8

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      +...-.++||+|||.|.++..++.+ +.+++++|+++.+++.|++++.... +++++++|+-+..+.. .   ||+|++.
T Consensus        40 p~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~P~~-~---FDLIV~S  113 (201)
T PF05401_consen   40 PRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEFWPEG-R---FDLIVLS  113 (201)
T ss_dssp             TTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT---SS-----EEEEEEE
T ss_pred             CccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCCCCC-C---eeEEEEe
Confidence            4445569999999999999999987 5699999999999999999987643 7999999997764433 4   9999987


Q ss_pred             CCCCCCCCC-CCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKG-VDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~-~~~~~l~~~~~~~~  147 (216)
                      -.+++.... .....+..+...+.
T Consensus       114 EVlYYL~~~~~L~~~l~~l~~~L~  137 (201)
T PF05401_consen  114 EVLYYLDDAEDLRAALDRLVAALA  137 (201)
T ss_dssp             S-GGGSSSHHHHHHHHHHHHHTEE
T ss_pred             hHhHcCCCHHHHHHHHHHHHHHhC
Confidence            776666442 33345666666654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.22  E-value=2.9e-10  Score=90.29  Aligned_cols=96  Identities=25%  Similarity=0.324  Sum_probs=74.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .++.+|||+|||+|.++..++...  ..+++++|+++.+++.++.++..++.  ++.++.+|+.+.+.....   ||+|+
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~D~I~  126 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS---FDAVT  126 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC---ccEEE
Confidence            466899999999999999999765  37999999999999999999876544  688999999886654334   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++...+..  ......++.+.+.++
T Consensus       127 ~~~~l~~~--~~~~~~l~~~~~~L~  149 (239)
T PRK00216        127 IAFGLRNV--PDIDKALREMYRVLK  149 (239)
T ss_pred             EecccccC--CCHHHHHHHHHHhcc
Confidence            86555443  234566777766655

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.22  E-value=4.9e-11  Score=90.43  Aligned_cols=96  Identities=20%  Similarity=0.236  Sum_probs=72.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||.|.+...+........+|+|++++.+..+..+      .+.++++|+.+..... .+..||+||++-.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f-~d~sFD~VIlsqt   84 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADF-PDQSFDYVILSQT   84 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhC-CCCCccEEehHhH
Confidence            47789999999999999999875555999999999998888777      5788999998855332 2334999998644


Q ss_pred             CCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945          127 FGTRKKGVDMDFLSMALKVASQAVY  151 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~~~~~  151 (216)
                      ....  ......++++++.++..+.
T Consensus        85 LQ~~--~~P~~vL~EmlRVgr~~IV  107 (193)
T PF07021_consen   85 LQAV--RRPDEVLEEMLRVGRRAIV  107 (193)
T ss_pred             HHhH--hHHHHHHHHHHHhcCeEEE
Confidence            3322  2234678889998884443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK04266 fibrillarin; Provisional

Probab=99.22  E-value=4.5e-10  Score=88.73  Aligned_cols=113  Identities=17%  Similarity=0.103  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      -...+..++... ..+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+.++++.. .++.++.+|+..
T Consensus        54 r~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~  131 (226)
T PRK04266         54 RSKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARK  131 (226)
T ss_pred             ccchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCC
Confidence            345666666555 3345567889999999999999999976 3458999999999999887776643 268889999875


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ........++||+|+++.+.    .......++.+.+.++
T Consensus       132 ~~~~~~l~~~~D~i~~d~~~----p~~~~~~L~~~~r~LK  167 (226)
T PRK04266        132 PERYAHVVEKVDVIYQDVAQ----PNQAEIAIDNAEFFLK  167 (226)
T ss_pred             cchhhhccccCCEEEECCCC----hhHHHHHHHHHHHhcC
Confidence            21110011239999987551    1111234556655554

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.22  E-value=5.2e-11  Score=92.59  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      .....+|..+...   .+.++|||+||++|.-++.+++. + .++++.+|++++..+.|+++++..|.  +++++.+|+.
T Consensus        31 ~~~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~  107 (205)
T PF01596_consen   31 PETGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL  107 (205)
T ss_dssp             HHHHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred             HHHHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence            3444556555543   36679999999999999999974 2 46999999999999999999999988  7999999999


Q ss_pred             cccccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945          107 NLEWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus       107 ~~~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      +.....   ...++||+||.|-.     +..+..++..+.+..+ +.+.++.+.
T Consensus       108 ~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  108 EVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             HHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             hhHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccc
Confidence            865432   11246999999875     6678888888888766 566655544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=99.21  E-value=7.7e-11  Score=90.34  Aligned_cols=140  Identities=24%  Similarity=0.318  Sum_probs=100.9

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF  100 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~  100 (216)
                      ...+-|++.++..+........   ....|+|..||.|+.++..+..++ .|+++|+||.-+.+|++|++-.|+  +++|
T Consensus        72 ~wfsvTpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItF  147 (263)
T KOG2730|consen   72 GWFSVTPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITF  147 (263)
T ss_pred             ceEEeccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEE
Confidence            3345577888888887776542   456899999999999999998666 999999999999999999999999  7999


Q ss_pred             EEccccccccccc-CCCcccEEEEcCCCCCCCC-------------CCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          101 VQCDIRNLEWRVC-SVGHVDTVVMNPPFGTRKK-------------GVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       101 ~~~d~~~~~~~~~-~~~~fD~v~~npp~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      +++|+++...... ....+|+|+..||++.+..             ..-.+.++...++.+...+.+-......++....
T Consensus       148 I~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~~~~~fk~s~kispnv~~flprntdv~qls~~~  227 (263)
T KOG2730|consen  148 ICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPMGTKIFKSSLKISPNVAYFLPRNTDVNQLARLA  227 (263)
T ss_pred             EechHHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchhHHHHHHhhhhcCcchhhhCCcchhHHHHHHhc
Confidence            9999998765541 1123679999999987621             1122344555555555555544444444444433

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.21  E-value=2.2e-10  Score=89.37  Aligned_cols=92  Identities=23%  Similarity=0.321  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      +.+++.+.++..+    ...++.+|||+|||+|..+..++.. + ...|+++|+++..++.|+.+++..+. +++++++|
T Consensus        56 s~P~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd  131 (209)
T PF01135_consen   56 SAPSMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD  131 (209)
T ss_dssp             --HHHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred             hHHHHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence            3355666666554    4568899999999999999999976 3 34799999999999999999999988 89999999


Q ss_pred             cccccccccCCCcccEEEEcCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ..........   ||.|+++..
T Consensus       132 g~~g~~~~ap---fD~I~v~~a  150 (209)
T PF01135_consen  132 GSEGWPEEAP---FDRIIVTAA  150 (209)
T ss_dssp             GGGTTGGG-S---EEEEEESSB
T ss_pred             hhhccccCCC---cCEEEEeec
Confidence            8876555445   999999765

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN02476 O-methyltransferase

Probab=99.21  E-value=3.9e-10  Score=91.14  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      ......+|..+...   .+.++|||+|+++|..++.+++. + ..+++++|.+++.++.|+.|++..|+  +++++.+|+
T Consensus       103 ~~~~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        103 SPDQAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             CHHHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            44555555555543   36789999999999999999974 2 45899999999999999999999998  699999999


Q ss_pred             ccccccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          106 RNLEWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       106 ~~~~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      .+.....   ...++||+||.|.+     +..+..+++.+++..+ +++.++.+
T Consensus       180 ~e~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        180 AESLKSMIQNGEGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             HHHHHHHHhcccCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEec
Confidence            8865432   11245999999987     5667788888887765 55555433

>PRK00811 spermidine synthase; Provisional

Probab=99.20  E-value=1.9e-10  Score=93.97  Aligned_cols=105  Identities=13%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC------CCeEEEEcccccccccccCCCccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE------LDIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      ..+++||++|||+|..+..++++ +..+|+++|+|+.+++.|++++...+      .+++++.+|+..+...  ..++||
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yD  152 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFD  152 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCccc
Confidence            35679999999999999999987 56799999999999999999886431      2789999999886543  223599


Q ss_pred             EEEEcC--CCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          120 TVVMNP--PFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       120 ~v~~np--p~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +|++|.  |+.....-...++++.+.+.++ +++++.
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~  189 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA  189 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999985  4322111112456777777665 445444

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.19  E-value=1.1e-10  Score=89.32  Aligned_cols=110  Identities=16%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             HHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCc
Q 027945           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      .++...+..+..+|.|+|||.|..+..++++ +.+.++|+|.|++|++.|+.++.    +++|..+|+.++.... .   
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~p~~-~---   92 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWKPEQ-P---   92 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcCCCC-c---
Confidence            3344445667789999999999999999976 67799999999999999988865    5899999999887765 4   


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945          118 VDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST  158 (216)
Q Consensus       118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  158 (216)
                      +|++++|-.++..  ....+.+.+.+..+. +++..+--|++
T Consensus        93 ~dllfaNAvlqWl--pdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          93 TDLLFANAVLQWL--PDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             cchhhhhhhhhhc--cccHHHHHHHHHhhCCCceEEEECCCc
Confidence            9999999999887  344556777766654 55555555543

>PRK08317 hypothetical protein; Provisional

Probab=99.18  E-value=1.1e-09  Score=86.86  Aligned_cols=98  Identities=26%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|..+..+++..  ..+++++|+++.+++.++.+....+.++.+..+|+...+.....   ||+|+
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~---~D~v~   92 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS---FDAVR   92 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC---ceEEE
Confidence            44577899999999999999999752  46999999999999999988444334789999998876654434   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++-.+++..  .....++++.+.++
T Consensus        93 ~~~~~~~~~--~~~~~l~~~~~~L~  115 (241)
T PRK08317         93 SDRVLQHLE--DPARALAEIARVLR  115 (241)
T ss_pred             EechhhccC--CHHHHHHHHHHHhc
Confidence            987776552  23456666666654

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.16  E-value=3e-10  Score=89.77  Aligned_cols=91  Identities=18%  Similarity=0.235  Sum_probs=76.3

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccc
Q 027945           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (216)
Q Consensus        34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~  111 (216)
                      ..++..+.......+...|||+|.|||.++..+...|. +|+++|+|+.++....++.+....  +.+++++|+.....+
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            34445555554556788999999999999999999755 999999999999999999876553  689999999998877


Q ss_pred             ccCCCcccEEEEcCCCCCC
Q 027945          112 VCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       112 ~~~~~~fD~v~~npp~~~~  130 (216)
                      .     ||.||+|.||.-.
T Consensus       123 ~-----fd~cVsNlPyqIS  136 (315)
T KOG0820|consen  123 R-----FDGCVSNLPYQIS  136 (315)
T ss_pred             c-----cceeeccCCcccc
Confidence            5     9999999999765

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.16  E-value=1.9e-10  Score=87.40  Aligned_cols=131  Identities=22%  Similarity=0.194  Sum_probs=72.8

Q ss_pred             cccCCCCHHHHHHHHHHHHh--hcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC--C-
Q 027945           23 LEQYPTGPHIASRMLYTAEN--SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE--L-   96 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~--~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~--~-   96 (216)
                      ..-||.+..++..++.....  .....++.+|||+|||+|..++.+++. +..+|+.+|.++ .++.++.|++.|+  . 
T Consensus        18 ~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~   96 (173)
T PF10294_consen   18 GKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLD   96 (173)
T ss_dssp             -----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----
T ss_pred             EEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccc
Confidence            44466666666666665421  112457889999999999999999988 677999999998 9999999999987  2 


Q ss_pred             -CeEEEEccccccc-ccccCCCcccEEE-EcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEec
Q 027945           97 -DIDFVQCDIRNLE-WRVCSVGHVDTVV-MNPPFGTRKKGVDMDFLSMALKVASQAVYSLHK  155 (216)
Q Consensus        97 -~~~~~~~d~~~~~-~~~~~~~~fD~v~-~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  155 (216)
                       ++.+...||.+.. .......+||+|+ +|.-|...........+..++...+ .+++.+.
T Consensus        97 ~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~-~vl~~~~  157 (173)
T PF10294_consen   97 GRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG-KVLLAYK  157 (173)
T ss_dssp             ---EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T-TEEEEEE
T ss_pred             ccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC-EEEEEeC
Confidence             7888888887633 1111223599999 5777764322222333443333333 4555444

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.15  E-value=1.4e-09  Score=84.73  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=94.6

Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDF  100 (216)
Q Consensus        25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~  100 (216)
                      ..|...+..-..|..++..   .+.++|||+|++.|.-++.++.. + .++++++|++++.++.|++|++..|+  +++.
T Consensus        39 ~~pi~~~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~  115 (219)
T COG4122          39 GVPIIDPETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIEL  115 (219)
T ss_pred             CCCCCChhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence            3455545666666666543   47789999999999999999974 3 56999999999999999999999998  5788


Q ss_pred             EE-cccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          101 VQ-CDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       101 ~~-~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      +. +|+.+..... ..++||+||.|--     +..+..++..+.+.++ +.+.++.|
T Consensus       116 ~~~gdal~~l~~~-~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         116 LLGGDALDVLSRL-LDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             EecCcHHHHHHhc-cCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEee
Confidence            88 5888866542 3345999999853     7788899999998876 55555443

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.15  E-value=4.7e-10  Score=86.74  Aligned_cols=90  Identities=22%  Similarity=0.295  Sum_probs=69.4

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc--ccccCCCcccEEEEcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--WRVCSVGHVDTVVMNP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~fD~v~~np  125 (216)
                      ++.+|||+|||+|.++..+++.....++|+|+++.+++.++.+      +++++++|+.+..  ....+   ||+|+++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~s---fD~Vi~~~   83 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKS---FDYVILSQ   83 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCC---cCEEEEhh
Confidence            5679999999999999999876555889999999999888653      4678888887532  22224   99999999


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCC
Q 027945          126 PFGTRKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~~  148 (216)
                      ++++..  .....++++.+.++.
T Consensus        84 ~l~~~~--d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        84 TLQATR--NPEEILDEMLRVGRH  104 (194)
T ss_pred             HhHcCc--CHHHHHHHHHHhCCe
Confidence            987763  345678888887663

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.15  E-value=5.7e-10  Score=87.75  Aligned_cols=98  Identities=12%  Similarity=0.030  Sum_probs=71.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCeEEEEccccccccccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWRVC  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~~~~~d~~~~~~~~~  113 (216)
                      .++.+|||+|||.|..++.+|++|. +|+|+|+++.+++.+......             ...++++.++|++++.... 
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~-  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD-  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence            3567999999999999999999887 899999999999987432111             0126889999999875442 


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       .++||.|+---.+++........+++.+.+.++
T Consensus       114 -~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~  146 (218)
T PRK13255        114 -LADVDAVYDRAALIALPEEMRERYVQQLAALLP  146 (218)
T ss_pred             -CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC
Confidence             124999996555555555555666777766654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.14  E-value=3e-10  Score=99.37  Aligned_cols=98  Identities=18%  Similarity=0.172  Sum_probs=74.4

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc--ccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN--LEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++..... ..+++++++|+..  .+....+   ||+|+
T Consensus        34 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~~~---fD~I~  108 (475)
T PLN02336         34 PPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH-YKNVKFMCADVTSPDLNISDGS---VDLIF  108 (475)
T ss_pred             CccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc-CCceEEEEecccccccCCCCCC---EEEEe
Confidence            33466799999999999999999864 4999999999999887653221 1268899999864  3333334   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++.++++........+++++.+.++
T Consensus       109 ~~~~l~~l~~~~~~~~l~~~~r~Lk  133 (475)
T PLN02336        109 SNWLLMYLSDKEVENLAERMVKWLK  133 (475)
T ss_pred             hhhhHHhCCHHHHHHHHHHHHHhcC
Confidence            9999888755445677888877765

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.14  E-value=5.9e-10  Score=92.32  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             HHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCC
Q 027945           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~  115 (216)
                      .+...+...++.+|||+|||+|.++..+++..  ...|+++|+++.+++.|+++++.++. ++.++++|+.+....... 
T Consensus        71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~-  149 (322)
T PRK13943         71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP-  149 (322)
T ss_pred             HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC-
Confidence            33333344577899999999999999999753  24799999999999999999998887 689999998776544434 


Q ss_pred             CcccEEEEcCC
Q 027945          116 GHVDTVVMNPP  126 (216)
Q Consensus       116 ~~fD~v~~npp  126 (216)
                        ||+|+++..
T Consensus       150 --fD~Ii~~~g  158 (322)
T PRK13943        150 --YDVIFVTVG  158 (322)
T ss_pred             --ccEEEECCc
Confidence              999998643

>PLN03075 nicotianamine synthase; Provisional

Probab=99.14  E-value=1.7e-09  Score=88.05  Aligned_cols=98  Identities=16%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             CCCCEEEEecCCcchHH-HHHH-Hc-CCCeEEEEeCCHHHHHHHHHHHHh-cCC--CeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLG-AAAT-LL-GADQVIAIDIDSDSLELASENAAD-LEL--DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~-~~l~-~~-~~~~v~~~D~~~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      .++++|+|+|||.|.++ +.++ ++ +..+++++|+|+++++.|+++++. .++  +++|..+|+.+.......   ||+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~---FDl  198 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE---YDV  198 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC---cCE
Confidence            37789999999988553 3333 33 456899999999999999999964 565  699999999886433224   999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHhhcCC
Q 027945          121 VVMNPPFGTRKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       121 v~~npp~~~~~~~~~~~~l~~~~~~~~~  148 (216)
                      |+++ ..++..+....+.++.+.+..++
T Consensus       199 VF~~-ALi~~dk~~k~~vL~~l~~~LkP  225 (296)
T PLN03075        199 VFLA-ALVGMDKEEKVKVIEHLGKHMAP  225 (296)
T ss_pred             EEEe-cccccccccHHHHHHHHHHhcCC
Confidence            9999 66665556677788888887663

>PRK10742 putative methyltransferase; Provisional

Probab=99.13  E-value=1.4e-09  Score=85.96  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             CCCCC--EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc------C--C--CeEEEEccccccccccc
Q 027945           46 DVSNK--VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------E--L--DIDFVQCDIRNLEWRVC  113 (216)
Q Consensus        46 ~~~~~--~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~--~--~~~~~~~d~~~~~~~~~  113 (216)
                      ..++.  +|||+.+|+|..++.++.+|+ +|+++|.++.+....+.+++..      +  +  +++++++|+.++.....
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            34555  899999999999999999988 5999999999999999999874      2  1  58899999998775431


Q ss_pred             CCCcccEEEEcCCCCCCCCCC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGV  134 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~  134 (216)
                        ..||+|++||||....+..
T Consensus       163 --~~fDVVYlDPMfp~~~ksa  181 (250)
T PRK10742        163 --PRPQVVYLDPMFPHKQKSA  181 (250)
T ss_pred             --CCCcEEEECCCCCCCcccc
Confidence              1499999999998875554

>PRK04457 spermidine synthase; Provisional

Probab=99.13  E-value=2e-09  Score=87.06  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=77.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++++|||+|||+|.++..+++. +..+++++|+|+.+++.|+++....+.  +++++++|+.++....  ..+||+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--RHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--CCCCCEEEE
Confidence            35679999999999999999865 556999999999999999999875543  7899999998765432  134999999


Q ss_pred             cCCCCCCC--C-CCCHHHHHHHHhhcC-CcEEEE
Q 027945          124 NPPFGTRK--K-GVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       124 npp~~~~~--~-~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      |. |....  . -...++++.+.+.+. ++++++
T Consensus       143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence            84 33221  1 123688888888765 444443

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.11  E-value=2.4e-09  Score=85.01  Aligned_cols=111  Identities=27%  Similarity=0.353  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      +....+..+.......++.+|||+|||+|.++..+++.+. +++++|+++.+++.++.+....+..+++...|+.+.+..
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  110 (233)
T PRK05134         32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE  110 (233)
T ss_pred             hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh
Confidence            3333344444443355778999999999999999998765 899999999999999999887766778888888766422


Q ss_pred             ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          112 VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       112 ~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .  .++||+|++.-.+....  .....++.+.+...
T Consensus       111 ~--~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~  142 (233)
T PRK05134        111 H--PGQFDVVTCMEMLEHVP--DPASFVRACAKLVK  142 (233)
T ss_pred             c--CCCccEEEEhhHhhccC--CHHHHHHHHHHHcC
Confidence            1  23599999976665542  23345666666553

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.10  E-value=9.2e-10  Score=86.87  Aligned_cols=92  Identities=24%  Similarity=0.199  Sum_probs=72.3

Q ss_pred             CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ++|||+|||+|..+..+++. +..+|+|+|+++.+++.++.++...+.  +++++.+|+...+... .   ||+|++.-.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~-~---fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-T---YDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC-C---CCEeehHHH
Confidence            37999999999999999875 345899999999999999999988776  6899999986654432 4   999998766


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..  ....+++++.+.++
T Consensus        77 l~~~~--~~~~~l~~~~~~Lk   95 (224)
T smart00828       77 IHHIK--DKMDLFSNISRHLK   95 (224)
T ss_pred             HHhCC--CHHHHHHHHHHHcC
Confidence            65542  23466777766654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.09  E-value=1.4e-09  Score=74.00  Aligned_cols=92  Identities=28%  Similarity=0.379  Sum_probs=68.2

Q ss_pred             EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccc-cccCCCcccEEEEcCCCC
Q 027945           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~~~~~fD~v~~npp~~  128 (216)
                      +++|+|||+|.++..+++....+++++|+++.+++.+++.....+. +++++..|+.+... ...   ++|+|+++++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADE---SFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCC---ceEEEEEcccee
Confidence            4899999999999999985566999999999999999864444333 68999999988764 222   499999999987


Q ss_pred             CCCCCCCHHHHHHHHhhc
Q 027945          129 TRKKGVDMDFLSMALKVA  146 (216)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~  146 (216)
                      .. .......++.+.+..
T Consensus        78 ~~-~~~~~~~l~~~~~~l   94 (107)
T cd02440          78 HL-VEDLARFLEEARRLL   94 (107)
T ss_pred             eh-hhHHHHHHHHHHHHc
Confidence            53 123334455544443

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK04148 hypothetical protein; Provisional

Probab=99.09  E-value=3.3e-09  Score=76.34  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=59.9

Q ss_pred             CCCCCCEEEEecCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.++||+|||+|. ++..+++.|. +|+++|+++.+++.++.+      .+.++.+|+++.....  ...+|+|++
T Consensus        13 ~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~~--y~~a~liys   83 (134)
T PRK04148         13 EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLEI--YKNAKLIYS   83 (134)
T ss_pred             ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCCHHH--HhcCCEEEE
Confidence            34456899999999996 8889998776 999999999999988877      3789999999876653  223999995


Q ss_pred             -cCC
Q 027945          124 -NPP  126 (216)
Q Consensus       124 -npp  126 (216)
                       .||
T Consensus        84 irpp   87 (134)
T PRK04148         84 IRPP   87 (134)
T ss_pred             eCCC
Confidence             776

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.08  E-value=3.6e-09  Score=86.10  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=57.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .+..+|||+|||+|.++..+++..    ...++|+|+++.+++.|+++..    ++.+.++|+.++++.+++   ||+|+
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~lp~~~~s---fD~I~  156 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHRLPFADQS---LDAII  156 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeecccCCCcCCc---eeEEE
Confidence            355789999999999999888642    2379999999999999987642    578899999888776655   99999


Q ss_pred             Ec
Q 027945          123 MN  124 (216)
Q Consensus       123 ~n  124 (216)
                      +.
T Consensus       157 ~~  158 (272)
T PRK11088        157 RI  158 (272)
T ss_pred             Ee
Confidence            74

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.07  E-value=1.4e-09  Score=88.08  Aligned_cols=96  Identities=15%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CCCEEEEecCCcch----HHHHHHHcC------CCeEEEEeCCHHHHHHHHHHHHh-------------------cC---
Q 027945           48 SNKVVADFGCGCGT----LGAAATLLG------ADQVIAIDIDSDSLELASENAAD-------------------LE---   95 (216)
Q Consensus        48 ~~~~vLD~g~G~G~----~~~~l~~~~------~~~v~~~D~~~~~~~~a~~~~~~-------------------~~---   95 (216)
                      ++.+|+|+|||+|.    +++.+++..      ..+|+|+|+|+.+++.|+..+..                   .+   
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    444444431      24899999999999999885410                   00   


Q ss_pred             ------CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945           96 ------LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA  146 (216)
Q Consensus        96 ------~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~  146 (216)
                            .++++.++|+.+.+...+.   ||+|+|.-.+++.........++++.+.+
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~---fD~I~crnvl~yf~~~~~~~~l~~l~~~L  232 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGD---FDLIFCRNVLIYFDEPTQRKLLNRFAEAL  232 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCC---CCEEEechhHHhCCHHHHHHHHHHHHHHh
Confidence                  1578999999886654434   99999965544443223333444444433

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.07  E-value=1.8e-10  Score=86.92  Aligned_cols=129  Identities=22%  Similarity=0.209  Sum_probs=90.3

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQ  102 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~  102 (216)
                      ...|..+...+..++..-    ....+++|||+|+|+|..++..++.|...|+..|++|...+.++.|++.|++.+.+..
T Consensus        58 a~~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~  133 (218)
T COG3897          58 AFAWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTH  133 (218)
T ss_pred             HHHHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEee
Confidence            334444444444443322    3458899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCcccEEEE-cCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHH
Q 027945          103 CDIRNLEWRVCSVGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKK  164 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~-npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .|... ...  .   ||+++. |-.|.+.-....+.++..+...   ...+++..+.+.++..
T Consensus       134 ~d~~g-~~~--~---~Dl~LagDlfy~~~~a~~l~~~~~~l~~~---g~~vlvgdp~R~~lpk  187 (218)
T COG3897         134 ADLIG-SPP--A---FDLLLAGDLFYNHTEADRLIPWKDRLAEA---GAAVLVGDPGRAYLPK  187 (218)
T ss_pred             ccccC-CCc--c---eeEEEeeceecCchHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCch
Confidence            99876 332  3   999984 6666655333344444433322   2233355566555443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.05  E-value=4.6e-09  Score=82.18  Aligned_cols=83  Identities=23%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhcC-CCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           34 SRMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        34 ~~~l~~~~~~~~-~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      ...+..+...+. ..++.+|||+|||+|..+..++++.  ...|+++|+++ +.     ..    .+++++++|+.+...
T Consensus        36 ~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~----~~v~~i~~D~~~~~~  105 (209)
T PRK11188         36 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI----VGVDFLQGDFRDELV  105 (209)
T ss_pred             HHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC----CCcEEEecCCCChHH
Confidence            334444444444 3567899999999999999998763  35899999998 10     11    158999999987531


Q ss_pred             -----cccCCCcccEEEEcCC
Q 027945          111 -----RVCSVGHVDTVVMNPP  126 (216)
Q Consensus       111 -----~~~~~~~fD~v~~npp  126 (216)
                           .....++||+|++|+.
T Consensus       106 ~~~i~~~~~~~~~D~V~S~~~  126 (209)
T PRK11188        106 LKALLERVGDSKVQVVMSDMA  126 (209)
T ss_pred             HHHHHHHhCCCCCCEEecCCC
Confidence                 0001234999999873

>TIGR03438 probable methyltransferase

Probab=99.05  E-value=4.2e-09  Score=86.92  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEccccccc-ccccC-CCcccEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLE-WRVCS-VGHVDTV  121 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~-~~~~~-~~~fD~v  121 (216)
                      ++.+|||+|||+|..+..+++..  ..+++++|+|++|++.++.++...  ++++.++++|..+.. ..... .....++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            55789999999999999999763  358999999999999999988653  346788999987642 22211 0113455


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEE
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~  152 (216)
                      +++.+++.........+++++.+.++ +..++
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l  174 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL  174 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            56666666555555678888877765 34443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.04  E-value=3.8e-09  Score=83.07  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH-------------hcCCCeEEEEccccccccccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-------------DLELDIDFVQCDIRNLEWRVC  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~-------------~~~~~~~~~~~d~~~~~~~~~  113 (216)
                      .++.+||++|||.|.....+++.|. +|+|+|+++.+++.+.+...             ..+.+++++++|++++.....
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            3567999999999999999999888 79999999999999855221             113378999999999864221


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ..++||+|+---.|+.........+.+.+.+..+
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~  154 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS  154 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC
Confidence            2235999887667777766666667776666544

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.04  E-value=6.4e-11  Score=81.50  Aligned_cols=92  Identities=23%  Similarity=0.202  Sum_probs=54.2

Q ss_pred             EEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           53 ADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        53 LD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ||+|||+|.++..+... +..+++++|+|+.+++.+++++...+. +......+..+..... ..++||+|++.-.+++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD-PPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC-C----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc-cccccceehhhhhHhhh
Confidence            79999999999999876 456999999999999999888887664 4444444444432221 11249999998887766


Q ss_pred             CCCCCHHHHHHHHhhcC
Q 027945          131 KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       131 ~~~~~~~~l~~~~~~~~  147 (216)
                        .....+++.+.+.++
T Consensus        80 --~~~~~~l~~~~~~L~   94 (99)
T PF08242_consen   80 --EDIEAVLRNIYRLLK   94 (99)
T ss_dssp             --S-HHHHHHHHTTT-T
T ss_pred             --hhHHHHHHHHHHHcC
Confidence              333345555544443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.03  E-value=5.6e-09  Score=86.38  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=73.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|.+++.+++. +..+++++|. +.+++.+++++...+.  +++++.+|+++...+  .   +|+|
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~---~D~v  219 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E---ADAV  219 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C---CCEE
Confidence            3446679999999999999999976 4568999998 7899999999998877  689999999865443  3   7988


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++.-..|...+......++++.+.++
T Consensus       220 ~~~~~lh~~~~~~~~~il~~~~~~L~  245 (306)
T TIGR02716       220 LFCRILYSANEQLSTIMCKKAFDAMR  245 (306)
T ss_pred             EeEhhhhcCChHHHHHHHHHHHHhcC
Confidence            76444443333333456777776654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.03  E-value=5.2e-10  Score=88.14  Aligned_cols=100  Identities=26%  Similarity=0.403  Sum_probs=69.2

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-------CeEEEEcccccccccccCCCcccEE
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      |++|||+|||.|.++..|++.|. .|+|+|+++.+++.|+........       ++++.+.|++..-      ++||.|
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------ccccee
Confidence            57899999999999999999875 999999999999999999544332       2455555555432      239999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTS  157 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~  157 (216)
                      +|--.+++..  ....++..+.+.++  +.+|+..-..
T Consensus       163 vcsevleHV~--dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  163 VCSEVLEHVK--DPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             eeHHHHHHHh--CHHHHHHHHHHHhCCCCceEeeehhh
Confidence            9965554441  12245555555443  4666654443

>TIGR00417 speE spermidine synthase

Probab=99.02  E-value=1.1e-08  Score=83.07  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=76.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+++||++|||+|.++..+++++ ..+++++|+|+.+++.+++++...+     .+++++.+|..++....  .++||+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccE
Confidence            345699999999999999888775 6799999999999999999875432     16888899987755432  234999


Q ss_pred             EEEcCCCCCCCCCC--CHHHHHHHHhhcC-CcEEEE
Q 027945          121 VVMNPPFGTRKKGV--DMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       121 v~~npp~~~~~~~~--~~~~l~~~~~~~~-~~~~~~  153 (216)
                      |++|++........  ..++++.+.+.+. ++++++
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~  184 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA  184 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence            99998854332222  3467777777665 444443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.02  E-value=1.1e-08  Score=80.28  Aligned_cols=96  Identities=24%  Similarity=0.343  Sum_probs=73.3

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|..+..+++...  .+++++|+++.+++.++.+.. ...++.++.+|+.+.+...+   +||+|++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~---~~D~i~~  112 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDN---SFDAVTI  112 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCC---cEEEEEE
Confidence            34678999999999999999997654  489999999999999998876 22268899999988764433   4999998


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +-.++..  ......++.+.+.++
T Consensus       113 ~~~~~~~--~~~~~~l~~~~~~L~  134 (223)
T TIGR01934       113 AFGLRNV--TDIQKALREMYRVLK  134 (223)
T ss_pred             eeeeCCc--ccHHHHHHHHHHHcC
Confidence            6655443  234456777766654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.01  E-value=1e-08  Score=80.77  Aligned_cols=96  Identities=23%  Similarity=0.313  Sum_probs=74.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ..+.+|||+|||+|.++..+++.+. +++++|+++.+++.++.++...+. ++.+..+|+.+.+...  .++||+|+++-
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~D~i~~~~  120 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG--AKSFDVVTCME  120 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC--CCCccEEEehh
Confidence            3577999999999999999988665 799999999999999999988776 6889999988765442  13499999976


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .++..  ......++.+.+...
T Consensus       121 ~l~~~--~~~~~~l~~~~~~L~  140 (224)
T TIGR01983       121 VLEHV--PDPQAFIRACAQLLK  140 (224)
T ss_pred             HHHhC--CCHHHHHHHHHHhcC
Confidence            66544  233456666666554

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02366 spermidine synthase

Probab=99.01  E-value=1.3e-08  Score=83.97  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=76.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+++||++|||.|.....+++++ ..+|+.+|+|+.+++.|++.+...+     -+++++.+|+..+.... ..++||+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-PEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-cCCCCCE
Confidence            456899999999999999999874 5799999999999999999876431     27999999998765432 1234999


Q ss_pred             EEEcCCCCCCCCC--CCHHHHHHHHhhcC-CcEEE
Q 027945          121 VVMNPPFGTRKKG--VDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       121 v~~npp~~~~~~~--~~~~~l~~~~~~~~-~~~~~  152 (216)
                      |++|.+-......  ...++++.+.+.++ +++++
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv  203 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC  203 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence            9998653222111  13467777777765 45543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.00  E-value=6.5e-10  Score=86.11  Aligned_cols=113  Identities=20%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      +...+.+|||.|.|-|..++..+++|+.+|+.+|.||..++.|.-|-=..++   .++++.+|+.+..... .+..||+|
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-~D~sfDaI  209 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-DDESFDAI  209 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-CccccceE
Confidence            4557899999999999999999999988999999999999999887644444   5799999999977554 33459999


Q ss_pred             EEcCCCCCCCCCCC-HHHHHHHHhhcC--CcEEEEecCcc
Q 027945          122 VMNPPFGTRKKGVD-MDFLSMALKVAS--QAVYSLHKTST  158 (216)
Q Consensus       122 ~~npp~~~~~~~~~-~~~l~~~~~~~~--~~~~~~~~~~~  158 (216)
                      +-|||=....-..+ .++.+++.++++  +.+|..+..++
T Consensus       210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            99999544433332 367788888765  57776666655

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.95  E-value=4.7e-09  Score=85.43  Aligned_cols=84  Identities=25%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             CCEEEEecCCcchH-HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CC--CeEEEEccccccccc--ccCCCcccEEE
Q 027945           49 NKVVADFGCGCGTL-GAAATLLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCDIRNLEWR--VCSVGHVDTVV  122 (216)
Q Consensus        49 ~~~vLD~g~G~G~~-~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~~d~~~~~~~--~~~~~~fD~v~  122 (216)
                      ..++||||+|.-.+ .+..++....+++|+|+|+.+++.|+.|++.| ++  +++++...-....+.  ....+.||+++
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            45899999998755 44444443459999999999999999999999 66  687775532221111  11223599999


Q ss_pred             EcCCCCCCCC
Q 027945          123 MNPPFGTRKK  132 (216)
Q Consensus       123 ~npp~~~~~~  132 (216)
                      |||||+....
T Consensus       183 CNPPFy~s~~  192 (299)
T PF05971_consen  183 CNPPFYSSQE  192 (299)
T ss_dssp             E-----SS--
T ss_pred             cCCccccChh
Confidence            9999998743

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK03612 spermidine synthase; Provisional

Probab=98.95  E-value=2.5e-08  Score=88.07  Aligned_cols=104  Identities=16%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHH--Hh-c-----CCCeEEEEcccccccccccCCCc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENA--AD-L-----ELDIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~--~~-~-----~~~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      .++++|||+|||+|..+..+++++. .+|+++|+|+++++.++++.  .. +     +.+++++.+|+.++....  .++
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--~~~  373 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--AEK  373 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC--CCC
Confidence            4567999999999999999998764 79999999999999999842  21 1     126899999998865432  235


Q ss_pred             ccEEEEcCCCCCCCC---CCCHHHHHHHHhhcC-CcEEE
Q 027945          118 VDTVVMNPPFGTRKK---GVDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       118 fD~v~~npp~~~~~~---~~~~~~l~~~~~~~~-~~~~~  152 (216)
                      ||+|++|+|......   -...++++.+.+.++ +++++
T Consensus       374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv  412 (521)
T PRK03612        374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV  412 (521)
T ss_pred             CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence            999999988643211   112357777777765 34443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.94  E-value=7.1e-09  Score=77.14  Aligned_cols=87  Identities=23%  Similarity=0.309  Sum_probs=65.2

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ..++.+|||+|||+|.++..+++.+. +++++|+++.+++.         ........+........+.   ||+|+++-
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---fD~i~~~~   86 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDGS---FDLIICND   86 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSSS---EEEEEEES
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhccccc---hhhHhhHH
Confidence            35778999999999999999998877 99999999999988         1233333333333333334   99999998


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+++..  ....+++.+.+.++
T Consensus        87 ~l~~~~--d~~~~l~~l~~~Lk  106 (161)
T PF13489_consen   87 VLEHLP--DPEEFLKELSRLLK  106 (161)
T ss_dssp             SGGGSS--HHHHHHHHHHHCEE
T ss_pred             HHhhcc--cHHHHHHHHHHhcC
Confidence            887774  35577888887765

...

>PTZ00146 fibrillarin; Provisional

Probab=98.94  E-value=6.2e-09  Score=84.48  Aligned_cols=94  Identities=18%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      .+++.++.-+. .+...++.+|||+|||+|..+..++.. + ...|+++|+++.+.+.+...++.. .++.++.+|+...
T Consensus       116 Klaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p  193 (293)
T PTZ00146        116 KLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYP  193 (293)
T ss_pred             HHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccCh
Confidence            34544444433 334567789999999999999999976 3 458999999987664444433221 2688999998642


Q ss_pred             cccccCCCcccEEEEcCC
Q 027945          109 EWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp  126 (216)
                      .......+.+|+|++|-.
T Consensus       194 ~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        194 QKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             hhhhcccCCCCEEEEeCC
Confidence            110001123999999875

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.92  E-value=6.9e-09  Score=84.76  Aligned_cols=94  Identities=19%  Similarity=0.219  Sum_probs=73.3

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV  112 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~  112 (216)
                      -|+.+++..+...++.+++|.+||.|..+..+++..  ..+|+|+|.|+.+++.|+.++.. ..+++++++|+.++....
T Consensus         6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l   84 (296)
T PRK00050          6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVL   84 (296)
T ss_pred             ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHH
Confidence            355566665555677899999999999999999863  46999999999999999998866 347999999999865433


Q ss_pred             cC-CCcccEEEEcCCCCC
Q 027945          113 CS-VGHVDTVVMNPPFGT  129 (216)
Q Consensus       113 ~~-~~~fD~v~~npp~~~  129 (216)
                      .. ..++|.|++|.-...
T Consensus        85 ~~~~~~vDgIl~DLGvSs  102 (296)
T PRK00050         85 AEGLGKVDGILLDLGVSS  102 (296)
T ss_pred             HcCCCccCEEEECCCccc
Confidence            11 014999999876644

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.91  E-value=5.8e-09  Score=84.43  Aligned_cols=116  Identities=24%  Similarity=0.302  Sum_probs=84.5

Q ss_pred             CCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 027945           18 NPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL   96 (216)
Q Consensus        18 ~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~   96 (216)
                      ++..+++| |-..+.++..++..+    ...++..|||+|+|.|.++..++..+ .+++++|+|+..++..+...... -
T Consensus         3 k~kk~~gQnFL~~~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~-~   76 (262)
T PF00398_consen    3 KPKKSLGQNFLVDPNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN-P   76 (262)
T ss_dssp             SC-CGCTSSEEEHHHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC-S
T ss_pred             CCCCCCCcCeeCCHHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc-c
Confidence            34455555 445566666666655    33478899999999999999999877 69999999999999999877622 2


Q ss_pred             CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHh
Q 027945           97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALK  144 (216)
Q Consensus        97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~  144 (216)
                      +++++.+|+.++.....-......|++|.||+..     ...+.+.+.
T Consensus        77 ~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is-----~~il~~ll~  119 (262)
T PF00398_consen   77 NVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNIS-----SPILRKLLE  119 (262)
T ss_dssp             SEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGH-----HHHHHHHHH
T ss_pred             cceeeecchhccccHHhhcCCceEEEEEecccch-----HHHHHHHhh
Confidence            7999999999977665111236799999998433     345555555

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.91  E-value=4.7e-08  Score=78.08  Aligned_cols=115  Identities=16%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      ....+|..++..   .+.++|||+|+++|.-++.+++.  ..++++++|.+++..+.|+.+++..|+  +++++.+|+.+
T Consensus        66 ~~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         66 DEGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             HHHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            444555555433   35679999999999999999874  245999999999999999999999987  79999999988


Q ss_pred             cccccc----CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945          108 LEWRVC----SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       108 ~~~~~~----~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      ......    ..++||+||.|--     +..+...+..+++..+ ++++++.
T Consensus       143 ~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        143 VLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            654421    1245999999854     5667788888777766 4555443

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.90  E-value=1.3e-09  Score=88.78  Aligned_cols=102  Identities=25%  Similarity=0.328  Sum_probs=78.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHH-------HHHHHHHhcCC--
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE-------LASENAADLEL--   96 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~-------~a~~~~~~~~~--   96 (216)
                      |-.+.++.+++-..........+|+.|.|+..|||.+.+..+..|+ .|+|.|||-.++.       ..+.|.+..|.  
T Consensus       186 yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~  264 (421)
T KOG2671|consen  186 YIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS  264 (421)
T ss_pred             ccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcc
Confidence            3334445555444444443557899999999999999999999887 9999999988776       35778888886  


Q ss_pred             -CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           97 -DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        97 -~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                       -..+..+|+...+...  ...||.|+|||||+.+
T Consensus       265 ~fldvl~~D~sn~~~rs--n~~fDaIvcDPPYGVR  297 (421)
T KOG2671|consen  265 QFLDVLTADFSNPPLRS--NLKFDAIVCDPPYGVR  297 (421)
T ss_pred             hhhheeeecccCcchhh--cceeeEEEeCCCcchh
Confidence             3677889988766543  3469999999999986

>PRK01581 speE spermidine synthase; Validated

Probab=98.90  E-value=6.8e-08  Score=80.62  Aligned_cols=106  Identities=12%  Similarity=0.163  Sum_probs=75.4

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHH--HH---h---cCCCeEEEEcccccccccccCCC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASEN--AA---D---LELDIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~--~~---~---~~~~~~~~~~d~~~~~~~~~~~~  116 (216)
                      ...+++||++|||+|.....+.+++ ..+|+++|+|+.+++.|+..  +.   .   .+-+++++.+|+.++....  .+
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--~~  225 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--SS  225 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--CC
Confidence            3456799999999999988888874 57999999999999999962  11   1   1227999999999876442  23


Q ss_pred             cccEEEEcCCCCCC--CCCCC-HHHHHHHHhhcC-CcEEEE
Q 027945          117 HVDTVVMNPPFGTR--KKGVD-MDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       117 ~fD~v~~npp~~~~--~~~~~-~~~l~~~~~~~~-~~~~~~  153 (216)
                      +||+|++|+|-...  ....+ .++++.+.+.+. ++++++
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~  266 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC  266 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            59999999863221  11122 457777777765 455443

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.90  E-value=3.5e-08  Score=75.33  Aligned_cols=93  Identities=24%  Similarity=0.234  Sum_probs=71.1

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeE-EEEccccccc-ccccCCCcccEEEEcCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DID-FVQCDIRNLE-WRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~-~~~~d~~~~~-~~~~~~~~fD~v~~npp  126 (216)
                      ..|||+|||+|...-..--.+...|+++|.++.|-+.+.+.++.+.- +++ +++++.+.++ ..+++   +|.|++-..
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s---~DtVV~Tlv  154 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGS---YDTVVCTLV  154 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCC---eeeEEEEEE
Confidence            46899999999988777744555999999999999999999888755 676 9999999987 44445   999998433


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .  .......+.|++..+.++
T Consensus       155 L--CSve~~~k~L~e~~rlLR  173 (252)
T KOG4300|consen  155 L--CSVEDPVKQLNEVRRLLR  173 (252)
T ss_pred             E--eccCCHHHHHHHHHHhcC
Confidence            2  233445566776666665

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.89  E-value=6.7e-08  Score=71.37  Aligned_cols=127  Identities=16%  Similarity=0.186  Sum_probs=95.6

Q ss_pred             cCCCCCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHH
Q 027945           13 LEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        13 ~~~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~   89 (216)
                      +..|-.+..+.+. .||+...+..|+..+..    ..+.-|||+|.|||-++.++.++|  ...++++|.|++.+....+
T Consensus        16 ~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~p----esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~   91 (194)
T COG3963          16 FKGWIDNPRTVGAILPSSSILARKMASVIDP----ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ   91 (194)
T ss_pred             HHHHhcCCceeeeecCCcHHHHHHHHhccCc----ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence            4455555555555 78888888888877643    478899999999999999999886  5689999999999999888


Q ss_pred             HHHhcCCCeEEEEccccccc--ccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945           90 NAADLELDIDFVQCDIRNLE--WRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus        90 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ....    +.++.+|+....  ........||.|++-.|+-.......+..++.++...+
T Consensus        92 ~~p~----~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~  147 (194)
T COG3963          92 LYPG----VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP  147 (194)
T ss_pred             hCCC----ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC
Confidence            8653    678999998865  22222234999999999876655566667776665543

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.1e-07  Score=75.44  Aligned_cols=119  Identities=15%  Similarity=0.174  Sum_probs=95.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ...+|.+|||-|+|+|.++.++++.  +.++++..|......+.|.+..+..|+  ++++.+-|+-..-+.. ...++|.
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-ks~~aDa  180 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-KSLKADA  180 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-cccccce
Confidence            3468999999999999999999986  457999999999999999999998887  7899999988755544 3456999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcC
Q 027945          121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFN  171 (216)
Q Consensus       121 v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (216)
                      |+.|.|    .++..++.+..+++..+  +++++-.+..+++...+ ..|.
T Consensus       181 VFLDlP----aPw~AiPha~~~lk~~g--~r~csFSPCIEQvqrtc-e~l~  224 (314)
T KOG2915|consen  181 VFLDLP----APWEAIPHAAKILKDEG--GRLCSFSPCIEQVQRTC-EALR  224 (314)
T ss_pred             EEEcCC----ChhhhhhhhHHHhhhcC--ceEEeccHHHHHHHHHH-HHHH
Confidence            999999    66666666666555443  47778888888888777 4444

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.87  E-value=2.9e-08  Score=77.99  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh--c-----C-----C-CeEEEEccccccccc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--L-----E-----L-DIDFVQCDIRNLEWR  111 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~--~-----~-----~-~~~~~~~d~~~~~~~  111 (216)
                      ...++.+||.+|||.|.....++++|. +|+|+|+++.+++.+.+....  .     +     . +++++++|++++...
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            445667999999999999999999887 999999999999998433221  1     0     1 578999999997665


Q ss_pred             ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          112 VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       112 ~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ..  ++||+|+=--.|...+......+.+.+.+..+
T Consensus       113 ~~--g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~  146 (218)
T PF05724_consen  113 DV--GKFDLIYDRTFLCALPPEMRERYAQQLASLLK  146 (218)
T ss_dssp             CH--HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE
T ss_pred             hc--CCceEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence            41  24999997777787777777888888888765

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.87  E-value=6.5e-08  Score=74.81  Aligned_cols=117  Identities=22%  Similarity=0.290  Sum_probs=82.7

Q ss_pred             CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ..+||+|||.|.+.+.+|+. +...++|+|+....+..+...+...++ ++.++++|+.......-..+.+|.|+.+-|=
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            38999999999999999965 667999999999999999999988888 8999999998854332122349999986653


Q ss_pred             CCC------CCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          128 GTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       128 ~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      -+.      +--....++..+.+.+.....+.+.++..+|.....
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~  143 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWML  143 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHH
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence            222      122456888888888765555566666666665555

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.86  E-value=9.7e-09  Score=84.24  Aligned_cols=74  Identities=31%  Similarity=0.475  Sum_probs=65.4

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++++|||+|||+|.+++..|+.|+.+|+++|-+. +++.|++.+..|+.  .++++++.+.+...+.   .+.|+|++.
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~---eKVDiIvSE  134 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV---EKVDIIVSE  134 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc---cceeEEeeh
Confidence            58899999999999999999999999999999986 55999999999998  4899999999975553   249999984

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.85  E-value=1.5e-08  Score=82.49  Aligned_cols=77  Identities=29%  Similarity=0.437  Sum_probs=68.5

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .+..++.|||+|||+|.++...++.|+.+|+++|-+. |.+.|+..++.|.+  ++.++.+-+++...+. .   .|++|
T Consensus       174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k---~DviI  248 (517)
T KOG1500|consen  174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPE-K---VDVII  248 (517)
T ss_pred             cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCch-h---ccEEE
Confidence            4568899999999999999999999999999999974 99999999998877  7999999999877765 4   99999


Q ss_pred             EcCC
Q 027945          123 MNPP  126 (216)
Q Consensus       123 ~npp  126 (216)
                      +.|.
T Consensus       249 SEPM  252 (517)
T KOG1500|consen  249 SEPM  252 (517)
T ss_pred             eccc
Confidence            9865

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.84  E-value=7.2e-08  Score=78.20  Aligned_cols=116  Identities=19%  Similarity=0.125  Sum_probs=88.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-------CeEEEEcccccccccccC--CC-
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRVCS--VG-  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~--~~-  116 (216)
                      .++..++|+|||.|...+.+-+.|..+++|+||...+++.|+.+.+....       .+.++.+|.......+.-  .. 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            46778999999999999999998988999999999999999998886533       478999998774332211  12 


Q ss_pred             cccEEEEcCCCCCC--CCCCCHHHHHHHHhhcC-CcEEEEecCccHHHH
Q 027945          117 HVDTVVMNPPFGTR--KKGVDMDFLSMALKVAS-QAVYSLHKTSTREHV  162 (216)
Q Consensus       117 ~fD~v~~npp~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~  162 (216)
                      +||+|-|--.+|+.  ........+..+.+.++ |++|+..-|.....+
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii  244 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVII  244 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHH
Confidence            39999998888876  33344467777777776 677777776654444

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.83  E-value=3.5e-08  Score=82.16  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=79.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-----------CCCeEEEEcccccccccc--c-
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------ELDIDFVQCDIRNLEWRV--C-  113 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----------~~~~~~~~~d~~~~~~~~--~-  113 (216)
                      ++.+|||+|||-|.....+...+...++|+|++..+++.|+.+.+..           ....+++.+|........  . 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            67899999999999999999988889999999999999999998321           124678899987643221  1 


Q ss_pred             CCCcccEEEEcCCCCCC--CCCCCHHHHHHHHhhcC-CcEEEEecCccHHH
Q 027945          114 SVGHVDTVVMNPPFGTR--KKGVDMDFLSMALKVAS-QAVYSLHKTSTREH  161 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~  161 (216)
                      ...+||+|-|--.+|+.  +......+++.+.+.++ |++|+.+-|.....
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence            11359999998888887  33334457888888776 56666666666544

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.83  E-value=7.8e-08  Score=73.95  Aligned_cols=70  Identities=24%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-----cccCCCccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-----RVCSVGHVD  119 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~fD  119 (216)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+        ..  .+++++++|+.+...     .....++||
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI--ENVDFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC--CCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            57789999999999999988865  34589999999854        11  157888888876421     000122499


Q ss_pred             EEEEcCC
Q 027945          120 TVVMNPP  126 (216)
Q Consensus       120 ~v~~npp  126 (216)
                      +|++|++
T Consensus       101 ~V~~~~~  107 (188)
T TIGR00438       101 VVMSDAA  107 (188)
T ss_pred             EEEcCCC
Confidence            9999853

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.82  E-value=6.5e-08  Score=76.40  Aligned_cols=54  Identities=30%  Similarity=0.398  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHH
Q 027945           33 ASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL   86 (216)
Q Consensus        33 ~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~   86 (216)
                      ....|..++..+.. .++.++||+|||+|.++..+++.|+.+|+++|+++.++..
T Consensus        59 ~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        59 GGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             hHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            44555566655443 5778999999999999999999888899999999976654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.81  E-value=5.2e-08  Score=75.08  Aligned_cols=86  Identities=29%  Similarity=0.439  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhhcCCC--CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           30 PHIASRMLYTAENSFGDV--SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~--~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      ..++..|....++-+..+  ...-|||||||+|..+..+...| -..+|+|+|+.|++.|.+.--    .-.++.+|.-+
T Consensus        30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~----egdlil~DMG~  104 (270)
T KOG1541|consen   30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL----EGDLILCDMGE  104 (270)
T ss_pred             eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh----hcCeeeeecCC
Confidence            345566666655543333  36789999999999999998867 489999999999999987321    23567777765


Q ss_pred             -ccccccCCCcccEEEE
Q 027945          108 -LEWRVCSVGHVDTVVM  123 (216)
Q Consensus       108 -~~~~~~~~~~fD~v~~  123 (216)
                       +++..+.   ||-+|+
T Consensus       105 GlpfrpGt---FDg~IS  118 (270)
T KOG1541|consen  105 GLPFRPGT---FDGVIS  118 (270)
T ss_pred             CCCCCCCc---cceEEE
Confidence             3444444   998886

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.78  E-value=2.2e-07  Score=73.30  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ...+||||||.|.+.+.+|+. +...++|+|+....+..|...+...++ ++.+++.|+.+........+..|-|+.+-|
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            358999999999999999975 566999999999999999999999999 999999999986655433335898887655


Q ss_pred             CCCC------CCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHH
Q 027945          127 FGTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKK  164 (216)
Q Consensus       127 ~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      =-+.      +-=....+++.+.+.+.....+.+.++...|+..
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            3222      1123557888888888766677778888777776

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.74  E-value=6.3e-07  Score=77.94  Aligned_cols=84  Identities=13%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||.|.-+..++..  +...++++|+++..++.+++|+++.|+ ++.+.+.|...+....  .+.||.|
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~--~~~fD~I  187 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL--PETFDAI  187 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhc--hhhcCeE
Confidence            3467889999999999999998865  345899999999999999999999998 7888899987653221  1239999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++|+|....
T Consensus       188 LvDaPCSG~  196 (470)
T PRK11933        188 LLDAPCSGE  196 (470)
T ss_pred             EEcCCCCCC
Confidence            999998654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.74  E-value=2.8e-08  Score=85.88  Aligned_cols=74  Identities=26%  Similarity=0.361  Sum_probs=57.7

Q ss_pred             CCEEEEecCCcchHHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945           49 NKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      +.+|+|+|||+|.++...++.+     ..+|+++|-|+.++...+..+..++.  +|+++++|..+...+. .   .|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-k---vDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-K---VDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-----EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-c---eeEE
Confidence            6799999999999987777653     56999999999999888877677766  7999999999987765 4   9999


Q ss_pred             EEcCC
Q 027945          122 VMNPP  126 (216)
Q Consensus       122 ~~npp  126 (216)
                      |+-+-
T Consensus       263 VSElL  267 (448)
T PF05185_consen  263 VSELL  267 (448)
T ss_dssp             EE---
T ss_pred             EEecc
Confidence            98643

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.71  E-value=1.9e-08  Score=75.57  Aligned_cols=94  Identities=24%  Similarity=0.310  Sum_probs=73.1

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ...++.|+|+|+|.++...+.. +.+|+++|.||...++|.+|+..+|. +++++.+|+....+..     .|+|+|..-
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~-----ADvvicEml  105 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFEN-----ADVVICEML  105 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccc-----cceeHHHHh
Confidence            3468999999999999999885 77999999999999999999988888 8999999999988854     899998432


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      =-..-.....+.+..+++.++
T Consensus       106 DTaLi~E~qVpV~n~vleFLr  126 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLR  126 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhh
Confidence            111112334455666665443

>PLN02823 spermine synthase

Probab=98.66  E-value=1.9e-06  Score=71.97  Aligned_cols=103  Identities=13%  Similarity=0.141  Sum_probs=74.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ..++||.+|+|.|.....+.++ +..+++++|+|+..++.|++.+..++     -+++++.+|+..+....  .++||+|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEE
Confidence            5579999999999999998886 46799999999999999999986542     27999999999876432  3459999


Q ss_pred             EEcCCCCC--C-CCC-CCHHHHH-HHHhhcC-CcEEE
Q 027945          122 VMNPPFGT--R-KKG-VDMDFLS-MALKVAS-QAVYS  152 (216)
Q Consensus       122 ~~npp~~~--~-~~~-~~~~~l~-~~~~~~~-~~~~~  152 (216)
                      ++|.+-..  . ... -..++++ .+.+.+. +++++
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv  217 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV  217 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence            99964211  0 001 1346666 5666655 44444

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=7.7e-07  Score=75.02  Aligned_cols=125  Identities=21%  Similarity=0.253  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~  105 (216)
                      +...+.+.-.+   +.+.++.+|||++++-|.=+..+++..   ...|+++|+++..++..+.|+++.|+ ++.+++.|.
T Consensus       141 Qd~sS~l~a~~---L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~  217 (355)
T COG0144         141 QDEASQLPALV---LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA  217 (355)
T ss_pred             cCHHHHHHHHH---cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence            44444444433   345788999999999999888888753   23579999999999999999999999 678888887


Q ss_pred             ccccccccCCCcccEEEEcCCCCCC---CC-----------------CCCHHHHHHHHhhc---CCcEEEEecCc
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTR---KK-----------------GVDMDFLSMALKVA---SQAVYSLHKTS  157 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~---~~-----------------~~~~~~l~~~~~~~---~~~~~~~~~~~  157 (216)
                      ..........++||.|++|+|....   +.                 ....+.|..+....   +..+|..|.-.
T Consensus       218 ~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~  292 (355)
T COG0144         218 RRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT  292 (355)
T ss_pred             ccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence            7654433222259999999998665   00                 11234555555554   34888887764

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.64  E-value=1.3e-06  Score=66.79  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=88.3

Q ss_pred             hhHHHHHhccCCCCCCccccccCCCCHHHH-HHHHHHHHhhcCCC-CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCC
Q 027945            4 KQLESVLGDLEQFSNPKVELEQYPTGPHIA-SRMLYTAENSFGDV-SNKVVADFGCGCGTLGAAATL-LGADQVIAIDID   80 (216)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~l~~~~~~~~~~-~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~   80 (216)
                      ++++.+.+.+..|.+ ........+...+. .++++.+...-... .+.+++|+|+|.|.-++.++- ++..+++.+|.+
T Consensus         3 ~~l~~y~~lL~~~N~-~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~   81 (184)
T PF02527_consen    3 EKLEQYLELLLEWNK-KINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV   81 (184)
T ss_dssp             HHHHHHHHHHHHHHH-CSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred             HHHHHHHHHHHHhCc-eeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence            455555555555421 11222233434444 45555554331222 223899999999999999984 466699999999


Q ss_pred             HHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhh-cC-CcEEEEecCc
Q 027945           81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV-AS-QAVYSLHKTS  157 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~  157 (216)
                      ..-+...+.-....++ +++++++.+++ ....   .+||+|++       +.-.....+-+.... .+ ++.++..+..
T Consensus        82 ~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~---~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen   82 GKKVAFLKEVVRELGLSNVEVINGRAEE-PEYR---ESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             HHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTT---T-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             chHHHHHHHHHHHhCCCCEEEEEeeecc-cccC---CCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            9999999999998888 69999999998 2222   23999998       333444444444443 33 4444444443


Q ss_pred             c-HHHHHH
Q 027945          158 T-REHVKK  164 (216)
Q Consensus       158 ~-~~~~~~  164 (216)
                      . .+.+.+
T Consensus       151 ~~~~El~~  158 (184)
T PF02527_consen  151 DAEEELEE  158 (184)
T ss_dssp             --HHHHHT
T ss_pred             ChHHHHHH
Confidence            3 344433

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.61  E-value=1.4e-06  Score=68.46  Aligned_cols=133  Identities=24%  Similarity=0.252  Sum_probs=72.4

Q ss_pred             CCccccccCC-CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945           18 NPKVELEQYP-TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE   95 (216)
Q Consensus        18 ~~~~~~~~~~-t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~   95 (216)
                      .+...+.|-. |++....+.+. +... ....+++||=+|=+. ..+++++. ..+.+|+.+|+|+..++..+..++..|
T Consensus        15 ~~~~~~DQ~~~T~eT~~~Ra~~-~~~~-gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g   91 (243)
T PF01861_consen   15 EPDVELDQGYATPETTLRRAAL-MAER-GDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG   91 (243)
T ss_dssp             ---GGGT---B-HHHHHHHHHH-HHHT-T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT
T ss_pred             CCccccccccccHHHHHHHHHH-HHhc-CcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC
Confidence            3445555533 44333333333 3332 567889999888332 34555553 346799999999999999999999999


Q ss_pred             CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--C-cEEEEecCc
Q 027945           96 LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--Q-AVYSLHKTS  157 (216)
Q Consensus        96 ~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~  157 (216)
                      .+++.++.|+....+.. -.++||+++.||||-..   ...-|+.+....++  + .+|+.+...
T Consensus        92 l~i~~~~~DlR~~LP~~-~~~~fD~f~TDPPyT~~---G~~LFlsRgi~~Lk~~g~~gy~~~~~~  152 (243)
T PF01861_consen   92 LPIEAVHYDLRDPLPEE-LRGKFDVFFTDPPYTPE---GLKLFLSRGIEALKGEGCAGYFGFTHK  152 (243)
T ss_dssp             --EEEE---TTS---TT-TSS-BSEEEE---SSHH---HHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred             CceEEEEecccccCCHH-HhcCCCEEEeCCCCCHH---HHHHHHHHHHHHhCCCCceEEEEEecC
Confidence            99999999999866554 34569999999998653   23457888877765  2 566665554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.60  E-value=1.9e-07  Score=81.78  Aligned_cols=105  Identities=18%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             ccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C----CCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G----ADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        20 ~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      ....++|.||.++...|...+..    .+..+|.|+.||+|.+.+...+. +    ....+|.|+++..+..|+.|+-.+
T Consensus       162 ~k~~GEfyTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh  237 (489)
T COG0286         162 GKEAGEFYTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH  237 (489)
T ss_pred             CCCCCccCChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence            34458899998888777666532    35559999999999987777653 1    246899999999999999999988


Q ss_pred             CCC--eEEEEccccccccccc--CCCcccEEEEcCCCC
Q 027945           95 ELD--IDFVQCDIRNLEWRVC--SVGHVDTVVMNPPFG  128 (216)
Q Consensus        95 ~~~--~~~~~~d~~~~~~~~~--~~~~fD~v~~npp~~  128 (216)
                      |.+  +...++|...-+....  ..++||+|++||||.
T Consensus       238 gi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~  275 (489)
T COG0286         238 GIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFS  275 (489)
T ss_pred             CCCccccccccccccCCcccccCCccceeEEEeCCCCC
Confidence            874  5677777766554421  224699999999997

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.57  E-value=2.1e-06  Score=66.08  Aligned_cols=119  Identities=23%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHH---HcCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAADL-----------   94 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~---~~~~~~v~~~D~~~~~~~~a~~~~~~~-----------   94 (216)
                      |-.+++++.+..+..+....+.++.|+|||+|.+.-.+.   +.....|++.|+|+.+++.|++|+...           
T Consensus        32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e  111 (246)
T PF11599_consen   32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE  111 (246)
T ss_dssp             -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence            356899999998877656666799999999998754444   223568999999999999999987642           


Q ss_pred             ------------------------------C-C-CeEEEEcccccccccc--cCCCcccEEEEcCCCCCCCCCCC-----
Q 027945           95 ------------------------------E-L-DIDFVQCDIRNLEWRV--CSVGHVDTVVMNPPFGTRKKGVD-----  135 (216)
Q Consensus        95 ------------------------------~-~-~~~~~~~d~~~~~~~~--~~~~~fD~v~~npp~~~~~~~~~-----  135 (216)
                                                    | . ...+.++|+++.....  ......|+|+.|.||+....+.-     
T Consensus       112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~  191 (246)
T PF11599_consen  112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG  191 (246)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence                                          1 1 3567888888743211  11123799999999999865544     


Q ss_pred             --HHHHHHHHhhcC
Q 027945          136 --MDFLSMALKVAS  147 (216)
Q Consensus       136 --~~~l~~~~~~~~  147 (216)
                        ..++..+...++
T Consensus       192 p~~~ml~~l~~vLp  205 (246)
T PF11599_consen  192 PVAQMLNSLAPVLP  205 (246)
T ss_dssp             HHHHHHHHHHCCS-
T ss_pred             cHHHHHHHHHhhCC
Confidence              234454444444

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.56  E-value=2.2e-06  Score=66.80  Aligned_cols=170  Identities=14%  Similarity=0.166  Sum_probs=102.6

Q ss_pred             hHHHHHhccCCCCCCccccccCCCCHHH-HHHHHHHHHhhcCCCC--CCEEEEecCCcchHHHHHH-HcCCCeEEEEeCC
Q 027945            5 QLESVLGDLEQFSNPKVELEQYPTGPHI-ASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAAT-LLGADQVIAIDID   80 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~l~~~~~~~~~~~--~~~vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~   80 (216)
                      +++.+..-+..|.+. .......++.++ ..++++.+... ....  +.+++|+|+|.|.-++.+| ..+..+|+.+|..
T Consensus        23 ~l~~Y~~lL~~wN~~-~NLt~~~~~~e~~~rHilDSl~~~-~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~  100 (215)
T COG0357          23 KLEAYVELLLKWNKA-YNLTAIRDPEELWQRHILDSLVLL-PYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESL  100 (215)
T ss_pred             HHHHHHHHHHHhhHh-cCCCCCCCHHHHHHHHHHHHhhhh-hcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccC
Confidence            344444444444222 222233444444 45555555433 3333  5899999999999999998 4455679999999


Q ss_pred             HHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc-C-CcEEE-EecC
Q 027945           81 SDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA-S-QAVYS-LHKT  156 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~-~-~~~~~-~~~~  156 (216)
                      ...+...+.-....++ +++++++.++++......   ||+|.+       +.-.....+.+..... + +..++ ....
T Consensus       101 ~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~---~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~  170 (215)
T COG0357         101 GKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQ---YDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGL  170 (215)
T ss_pred             chHHHHHHHHHHHhCCCCeEEehhhHhhccccccc---CcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHH
Confidence            9999999999998888 699999999988765423   999998       3334444444444332 2 12221 2223


Q ss_pred             ccHHHHHHHHhhhcCCccceEEEEEeecCCc
Q 027945          157 STREHVKKAALRDFNASSAEVLCELRYDVPQ  187 (216)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  187 (216)
                      ...+++.+.- +.....++.......+..|.
T Consensus       171 ~~~~e~~e~~-~a~~~~~~~~~~~~~~~~p~  200 (215)
T COG0357         171 AGKDELPEAE-KAILPLGGQVEKVFSLTVPE  200 (215)
T ss_pred             hhhhhHHHHH-HHHHhhcCcEEEEEEeecCC
Confidence            3344443333 43443444555544455554

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.54  E-value=3.7e-06  Score=67.38  Aligned_cols=105  Identities=14%  Similarity=0.169  Sum_probs=76.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      .++++||-+|.|.|.....+.++. ..+++++|+|+..++.|++.+....     -+++++.+|...+.... .+.+||+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-~~~~yDv  153 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-QEEKYDV  153 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-SST-EEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-cCCcccE
Confidence            367899999999999999999875 6799999999999999999876531     27999999999877654 2126999


Q ss_pred             EEEcCCCCCCC--CCCCHHHHHHHHhhcC-CcEEE
Q 027945          121 VVMNPPFGTRK--KGVDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       121 v~~npp~~~~~--~~~~~~~l~~~~~~~~-~~~~~  152 (216)
                      |+.|.+-....  .--..++++.+.+.+. +++++
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v  188 (246)
T PF01564_consen  154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV  188 (246)
T ss_dssp             EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence            99987742111  1124678888888776 44444

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.53  E-value=2.9e-06  Score=69.05  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             CCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC----C-CeEEEEcccccccccccCCCcccEEE
Q 027945           49 NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE----L-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .++||-+|-|.|..+.++.++. ..+++.+|+|+..++.+++.+....    . +++++.+|..++......  +||+|+
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~--~fDvIi  154 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE--KFDVII  154 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC--cCCEEE
Confidence            3699999999999999999985 7899999999999999999988765    2 789999999998776422  699999


Q ss_pred             EcCCCC-CCCCCC-CHHHHHHHHhhcC-CcEEEEe
Q 027945          123 MNPPFG-TRKKGV-DMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       123 ~npp~~-~~~~~~-~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      +|..=. .+.+.. ..+|++.+.+.++ +++++.-
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            864322 111222 4578888887776 4555443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.45  E-value=6.3e-06  Score=67.45  Aligned_cols=97  Identities=20%  Similarity=0.253  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~  106 (216)
                      +...+.+....+   .+.++.+|||++++.|.-+..++..  +.+.+++.|+++..++..+.|+++.|. ++.+...|..
T Consensus        70 Qd~sS~l~~~~L---~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~  146 (283)
T PF01189_consen   70 QDESSQLVALAL---DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADAR  146 (283)
T ss_dssp             HHHHHHHHHHHH---TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHH
T ss_pred             cccccccccccc---cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccc
Confidence            344444444333   4568889999999999998888864  367999999999999999999999998 7788888888


Q ss_pred             cccccccCCCcccEEEEcCCCCCC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ...... ....||.|+.|+|-...
T Consensus       147 ~~~~~~-~~~~fd~VlvDaPCSg~  169 (283)
T PF01189_consen  147 KLDPKK-PESKFDRVLVDAPCSGL  169 (283)
T ss_dssp             HHHHHH-HTTTEEEEEEECSCCCG
T ss_pred             cccccc-cccccchhhcCCCccch
Confidence            763322 11139999999998665

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.44  E-value=2.8e-06  Score=66.60  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      ...+.-+||+||-+|.+++.+++. ++..+.|+|||+..++.|+++++..
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            346778999999999999999975 7889999999999999999998753

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.44  E-value=7.6e-06  Score=63.72  Aligned_cols=104  Identities=19%  Similarity=0.244  Sum_probs=81.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc---cCCCccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV---CSVGHVD  119 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~~~~fD  119 (216)
                      ..++++||+|.=||.-++.+|..  ..++|+++|+|+..++.+....+..|+  +++++++++.+.....   ...+.||
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD  151 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD  151 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence            36789999999999888887764  256999999999999999999999998  7999999998855432   2345699


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      ++|.|-     .+..+...+.++++..+ |.+.+..+
T Consensus       152 faFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  152 FAFVDA-----DKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             EEEEcc-----chHHHHHHHHHHHhhcccccEEEEec
Confidence            999974     25566678888888876 55555544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.43  E-value=9.4e-08  Score=74.14  Aligned_cols=73  Identities=23%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      =+++||+|||||..+..+..+ ..+.+|+|+|..|++.|.+.-    ..-...++|+..+.... ...+||+|++--.+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD~L~~Aea~~Fl~~~-~~er~DLi~AaDVl  198 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYDTLYVAEAVLFLEDL-TQERFDLIVAADVL  198 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chHHHHHHHHHHHhhhc-cCCcccchhhhhHH
Confidence            469999999999999999876 458999999999999997762    22355667766554322 33359999974443

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=6.3e-06  Score=68.38  Aligned_cols=98  Identities=23%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ..+|+|.-||||.-++..+.. +..+|+.-|+||.+++.++.|+..| +.+...++.|+..+.....  ..||+|=.||-
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~--~~fd~IDiDPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELH--RAFDVIDIDPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcC--CCccEEecCCC
Confidence            789999999999999999965 4449999999999999999999999 4477777799888766532  24999999965


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945          127 FGTRKKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                            +...+|++.+++..+ +++..+.
T Consensus       131 ------GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         131 ------GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             ------CCCchHHHHHHHHhhcCCEEEEE
Confidence                  667899999998876 3444333

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.38  E-value=1.1e-06  Score=68.23  Aligned_cols=102  Identities=16%  Similarity=0.069  Sum_probs=74.4

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ..+.||.|||.|.++-.+...-+.+|..+|.++..++.|++.+..... -.++++..+.++.+....   ||+|.+.-..
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~---YDlIW~QW~l  132 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGK---YDLIWIQWCL  132 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT----EEEEEEES-G
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCc---EeEEEehHhh
Confidence            469999999999999888764577999999999999999988766333 357889999988776434   9999999998


Q ss_pred             CCCCCCCCHHHHHHHHhhcCCcEEEE
Q 027945          128 GTRKKGVDMDFLSMALKVASQAVYSL  153 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~~~~~~~  153 (216)
                      .+..+...+.+++++...+.+..+++
T Consensus       133 ghLTD~dlv~fL~RCk~~L~~~G~Iv  158 (218)
T PF05891_consen  133 GHLTDEDLVAFLKRCKQALKPNGVIV  158 (218)
T ss_dssp             GGS-HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCcEEE
Confidence            88888888999999998876434443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.36  E-value=7.4e-06  Score=63.78  Aligned_cols=119  Identities=19%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             CCCEEEEecCCcchHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHhc-CC--CeEEEEcccccccccc--cCCCcccEE
Q 027945           48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCDIRNLEWRV--CSVGHVDTV  121 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~--~~~~~~~d~~~~~~~~--~~~~~fD~v  121 (216)
                      ++.++||+|.|.--+-=.+. +....+.+|.|+|+.+++.|+.++..| ++  .+++....-....+..  +..+.||++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t  157 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT  157 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence            44589999988664432222 223448999999999999999999988 55  4666533322222221  223459999


Q ss_pred             EEcCCCCCC---------CCCCCH------HHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          122 VMNPPFGTR---------KKGVDM------DFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       122 ~~npp~~~~---------~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      +||||||..         ++....      ......++.++..-.+.|..+...++...+
T Consensus       158 lCNPPFh~s~~da~~gsqrk~~nl~g~l~~~~~~~~lnfggq~qelwCegGe~afi~~mv  217 (292)
T COG3129         158 LCNPPFHDSAADARAGSQRKRRNLGGELGPTNKLDALNFGGQQQELWCEGGEVAFIKKMV  217 (292)
T ss_pred             ecCCCcchhHHHHHhcccCCcccccccccccccchhhhccCCceEEEecCcchhhHHHHH
Confidence            999999986         111111      112233444444556667666555554444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.34  E-value=4.4e-06  Score=68.59  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=73.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVC  113 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (216)
                      -|+..++..+...++..++|.-+|.|.-+..+++. +.++|+|+|.|+.+++.++++++..+-++.++++++.++.....
T Consensus         7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~   86 (305)
T TIGR00006         7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD   86 (305)
T ss_pred             hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence            34555555555567789999999999999999975 44799999999999999999988765579999999988653321


Q ss_pred             --CCCcccEEEEcCCCCC
Q 027945          114 --SVGHVDTVVMNPPFGT  129 (216)
Q Consensus       114 --~~~~fD~v~~npp~~~  129 (216)
                        ...++|.|++|.-...
T Consensus        87 ~~~~~~vDgIl~DLGvSS  104 (305)
T TIGR00006        87 ELLVTKIDGILVDLGVSS  104 (305)
T ss_pred             hcCCCcccEEEEeccCCH
Confidence              1124999999766543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=98.33  E-value=2.3e-06  Score=67.35  Aligned_cols=91  Identities=23%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc----CC------CeEEEEcccccccccccCCCccc
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL----EL------DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~----~~------~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      .+|||.-+|-|..++.++..|+ +|+++|-||......+.-++..    ..      +++++++|..++...  ....||
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~--~~~s~D  153 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ--PDNSFD  153 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC--HSS--S
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh--cCCCCC
Confidence            3899999999999999998777 8999999998776655433321    11      689999999997652  122499


Q ss_pred             EEEEcCCCCCCCCCCC----HHHHHHHH
Q 027945          120 TVVMNPPFGTRKKGVD----MDFLSMAL  143 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~----~~~l~~~~  143 (216)
                      +|++||.|....+...    ++.++.+.
T Consensus       154 VVY~DPMFp~~~ksa~vkk~m~~lr~L~  181 (234)
T PF04445_consen  154 VVYFDPMFPERKKSALVKKEMRVLRDLA  181 (234)
T ss_dssp             EEEE--S-----TTTT-SHHHHHHHHHH
T ss_pred             EEEECCCCCCcccccccccchHHHHHhh
Confidence            9999999988754442    34455443

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.33  E-value=1.9e-05  Score=69.67  Aligned_cols=119  Identities=10%  Similarity=0.071  Sum_probs=85.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .....+||+|||.|.+.+.+|.. +...++|+|+....+..+...+...++ ++.++..|+..+.... ..+++|.|+.+
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~-~~~sv~~i~i~  424 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL-PNNSLDGIYIL  424 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc-CcccccEEEEE
Confidence            45679999999999999999975 566999999999999888888877777 7888888875332111 22239999987


Q ss_pred             CCCCCC------CCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          125 PPFGTR------KKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       125 pp~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      -|=-+.      +--....+++.+.+.+.+...+.+.++..+|.....
T Consensus       425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~  472 (506)
T PRK01544        425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI  472 (506)
T ss_pred             CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            664333      122345788888887775555556777777766655

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.32  E-value=1e-05  Score=62.98  Aligned_cols=109  Identities=18%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHh-------cCC---CeEEEEcccccccc
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAAD-------LEL---DIDFVQCDIRNLEW  110 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~---~~~~~~~d~~~~~~  110 (216)
                      ......++.+.+|+|||.|...+.++ ..++.+++|+|+.+...+.|+...+.       .|.   ++++.++|+.+...
T Consensus        36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF  115 (205)
T ss_dssp             HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred             HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence            33345577899999999999877777 45787899999999988877654432       333   57889999887543


Q ss_pred             cc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945          111 RV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus       111 ~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      ..   ..   .|+|++|--...   ......+.+.+...+ +...++..+
T Consensus       116 ~~~~~s~---AdvVf~Nn~~F~---~~l~~~L~~~~~~lk~G~~IIs~~~  159 (205)
T PF08123_consen  116 VKDIWSD---ADVVFVNNTCFD---PDLNLALAELLLELKPGARIISTKP  159 (205)
T ss_dssp             HHHHGHC----SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred             HhhhhcC---CCEEEEeccccC---HHHHHHHHHHHhcCCCCCEEEECCC
Confidence            21   13   799999754221   122334444454444 444454444

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.27  E-value=3.8e-06  Score=61.39  Aligned_cols=57  Identities=26%  Similarity=0.346  Sum_probs=49.0

Q ss_pred             EEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945           51 VVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (216)
Q Consensus        51 ~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~  107 (216)
                      +++|+|||.|..+..+++.+. .+++++|.++.+++.++.+++.++. ++.+++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999998754 4899999999999999999998876 67777776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.27  E-value=7e-06  Score=67.96  Aligned_cols=89  Identities=18%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHhhcC--------CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeE
Q 027945           28 TGPHIASRMLYTAENSFG--------DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDID   99 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~--------~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~   99 (216)
                      .+++-+...|..+...+.        ..++.++||+||++|..+..+.++|. +|+++|..+ +.    ..+...+ +++
T Consensus       183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~~-~V~  255 (357)
T PRK11760        183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDTG-QVE  255 (357)
T ss_pred             CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCCC-CEE
Confidence            345566667777755543        24788999999999999999999887 999999655 22    1122212 689


Q ss_pred             EEEcccccccccccCCCcccEEEEcCC
Q 027945          100 FVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       100 ~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .+..|...+.+...   ++|+++||..
T Consensus       256 h~~~d~fr~~p~~~---~vDwvVcDmv  279 (357)
T PRK11760        256 HLRADGFKFRPPRK---NVDWLVCDMV  279 (357)
T ss_pred             EEeccCcccCCCCC---CCCEEEEecc
Confidence            99999887765332   4999999866

>PRK00536 speE spermidine synthase; Provisional

Probab=98.27  E-value=2.9e-05  Score=62.58  Aligned_cols=107  Identities=11%  Similarity=-0.016  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CeEEEEcccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIR  106 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~  106 (216)
                      +--++|...... ..+..++||-+|.|.|....++.++.. +|+.+|+|+..++.+++.+.....     +++++..   
T Consensus        57 iYHEmLvHppl~-~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~---  131 (262)
T PRK00536         57 IESELLAHMGGC-TKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---  131 (262)
T ss_pred             hHHHHHHHHHHh-hCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh---
Confidence            344444443322 235668999999999999999999864 999999999999999996654321     6777651   


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                       ....  ..++||+||.|..|.       ..+.+.+.+.++ +++++.
T Consensus       132 -~~~~--~~~~fDVIIvDs~~~-------~~fy~~~~~~L~~~Gi~v~  169 (262)
T PRK00536        132 -LLDL--DIKKYDLIICLQEPD-------IHKIDGLKRMLKEDGVFIS  169 (262)
T ss_pred             -hhhc--cCCcCCEEEEcCCCC-------hHHHHHHHHhcCCCcEEEE
Confidence             1111  113499999995432       456666666665 445544

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1.2e-05  Score=61.78  Aligned_cols=90  Identities=21%  Similarity=0.250  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHHHhcC--------C--
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLE--------L--   96 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~--~~~v~~~D~~~~~~~~a~~~~~~~~--------~--   96 (216)
                      +.+-+.++..+...  ..++.+.||+|+|||.++.-+++. +  ...++|+|.-++.++.+++|+...-        +  
T Consensus        66 p~mha~~le~L~~~--L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~  143 (237)
T KOG1661|consen   66 PHMHATALEYLDDH--LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR  143 (237)
T ss_pred             hHHHHHHHHHHHHh--hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence            56666666666543  348889999999999999888854 2  3355999999999999999998653        1  


Q ss_pred             -CeEEEEcccccccccccCCCcccEEEEc
Q 027945           97 -DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        97 -~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                       +..++.+|..........   ||.|.+-
T Consensus       144 ~~l~ivvGDgr~g~~e~a~---YDaIhvG  169 (237)
T KOG1661|consen  144 GELSIVVGDGRKGYAEQAP---YDAIHVG  169 (237)
T ss_pred             CceEEEeCCccccCCccCC---cceEEEc
Confidence             578899999887666555   9999985

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.25  E-value=3.9e-05  Score=59.73  Aligned_cols=100  Identities=28%  Similarity=0.294  Sum_probs=66.0

Q ss_pred             EEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           52 VADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        52 vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      |+|+||.-|.+++.+.+.+ +.+++++|+++..++.|+.+++..++  ++++..+|-++.......   .|.|+.-    
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~---~d~ivIA----   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGED---VDTIVIA----   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG------EEEEE----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCC---CCEEEEe----
Confidence            6899999999999999887 56899999999999999999999987  799999998775544323   6777641    


Q ss_pred             CCCCCCCHHHHHHHHhhcC----C-cEEEEecCccHHHH
Q 027945          129 TRKKGVDMDFLSMALKVAS----Q-AVYSLHKTSTREHV  162 (216)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~~~~~~  162 (216)
                          ++--..+.+++....    . .-++++.......+
T Consensus        74 ----GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~L  108 (205)
T PF04816_consen   74 ----GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYEL  108 (205)
T ss_dssp             ----EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHH
T ss_pred             ----cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHH
Confidence                333445555554432    2 23555554444333

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.24  E-value=8.9e-06  Score=69.01  Aligned_cols=92  Identities=26%  Similarity=0.300  Sum_probs=69.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .+.++||.-+|||.-++.++..  +..+|++.|+|+.+++.++.|++.|++   .+++.+.|+..+...  ....||+|=
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~--~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS--RQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH--STT-EEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh--ccccCCEEE
Confidence            3459999999999999999965  567999999999999999999999998   378889999886631  222499999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .||-      +...+|+..+++..+
T Consensus       127 lDPf------GSp~pfldsA~~~v~  145 (377)
T PF02005_consen  127 LDPF------GSPAPFLDSALQAVK  145 (377)
T ss_dssp             E--S------S--HHHHHHHHHHEE
T ss_pred             eCCC------CCccHhHHHHHHHhh
Confidence            9975      777899999999876

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.20  E-value=2.5e-05  Score=63.69  Aligned_cols=131  Identities=18%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEE
Q 027945           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFV  101 (216)
Q Consensus        25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~  101 (216)
                      .+|........+|.++....+...+.+|||+|||.|....++...  ...+++++|.|+.+++.++..++.... .....
T Consensus        10 r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~   89 (274)
T PF09243_consen   10 RMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW   89 (274)
T ss_pred             HhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh
Confidence            345555667778888877666677889999999999877666643  356899999999999999998765422 11111


Q ss_pred             EcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccH
Q 027945          102 QCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR  159 (216)
Q Consensus       102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  159 (216)
                      ..+..........   .|+|++.-.............++.+-+...+ ..+++-+++.
T Consensus        90 ~~~~~~~~~~~~~---~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt~  143 (274)
T PF09243_consen   90 RRVLYRDFLPFPP---DDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGTP  143 (274)
T ss_pred             hhhhhcccccCCC---CcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCCh
Confidence            1111111111112   5999987666666554445566666555544 5556666653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.20  E-value=1.5e-06  Score=68.05  Aligned_cols=91  Identities=19%  Similarity=0.133  Sum_probs=62.9

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      +.++|+|||+|..++-++.+ ..+|+|+|+++.+++.|++.....-.  .......+..++.....+   .|+|++---+
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~S---VDlI~~Aqa~  110 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEES---VDLITAAQAV  110 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcc---eeeehhhhhH
Confidence            38999999999878888886 56999999999999999887544322  223333333333333334   9999986666


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |..   ...++.+.+.+.++
T Consensus       111 HWF---dle~fy~~~~rvLR  127 (261)
T KOG3010|consen  111 HWF---DLERFYKEAYRVLR  127 (261)
T ss_pred             Hhh---chHHHHHHHHHHcC
Confidence            655   34466677766665

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.18  E-value=2.1e-05  Score=60.86  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=53.2

Q ss_pred             CCCEEEEecCCcch----HHHHHHH--c---C-CCeEEEEeCCHHHHHHHHHHH--------------Hh-----cC-C-
Q 027945           48 SNKVVADFGCGCGT----LGAAATL--L---G-ADQVIAIDIDSDSLELASENA--------------AD-----LE-L-   96 (216)
Q Consensus        48 ~~~~vLD~g~G~G~----~~~~l~~--~---~-~~~v~~~D~~~~~~~~a~~~~--------------~~-----~~-~-   96 (216)
                      +.-+|+..||++|-    +++.+..  .   + .-+++|+|+|+.+++.|+.-.              +.     .+ . 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45699999999994    3333333  1   1 238999999999999987611              00     11 1 


Q ss_pred             --------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945           97 --------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus        97 --------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                              .++|.+.|+.+.....+   +||+|+|--.+.+.+.......++.+...+.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~---~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~  166 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFG---RFDLIFCRNVLIYFDPETQQRVLRRLHRSLK  166 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE
T ss_pred             eEChHHcCceEEEecccCCCCcccC---CccEEEecCEEEEeCHHHHHHHHHHHHHHcC
Confidence                    58999999988322222   4999999666555544444444444444443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.18  E-value=2.2e-05  Score=57.48  Aligned_cols=74  Identities=27%  Similarity=0.286  Sum_probs=55.1

Q ss_pred             CCCCCEEEEecCCcchHHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccccCCC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATL-----LGADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~-----~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~  116 (216)
                      ..+..+|+|+|||.|.++..++.     ....+|+++|.++..++.+..+.+..+.    +..+..++........ .  
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--   99 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSD-P--   99 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccC-C--
Confidence            35667999999999999999998     5556999999999999999998887662    3555555554432222 2  


Q ss_pred             cccEEEE
Q 027945          117 HVDTVVM  123 (216)
Q Consensus       117 ~fD~v~~  123 (216)
                       .++++.
T Consensus       100 -~~~~vg  105 (141)
T PF13679_consen  100 -PDILVG  105 (141)
T ss_pred             -CeEEEE
Confidence             566664

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.16  E-value=9.2e-06  Score=63.68  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             CEEEEecCCcchHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcC
Q 027945           50 KVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNP  125 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~np  125 (216)
                      .+||++|||.|.....+.+..   .-.|+++|.+|.+++..+.+......++.....|+....... ...+.+|.|++--
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            389999999999999998752   248999999999999999998776555655566655433111 1334599887754


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCCcEEEEecC
Q 027945          126 PFGTRKKGVDMDFLSMALKVASQAVYSLHKT  156 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  156 (216)
                      .+....++.-...++.+.+..+++..+++..
T Consensus       153 vLSAi~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            5444444444445555555544333444443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.13  E-value=4.4e-05  Score=63.36  Aligned_cols=77  Identities=21%  Similarity=0.236  Sum_probs=63.3

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH--h-c-CC----CeEEEEcccccccccccCCCcc
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAA--D-L-EL----DIDFVQCDIRNLEWRVCSVGHV  118 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~--~-~-~~----~~~~~~~d~~~~~~~~~~~~~f  118 (216)
                      .-.++|-+|.|.|.-..++.+.+ ..+++-+|+||.+++.++++.-  . | |.    ++.++..|++.+....+  .+|
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--~~f  366 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--DMF  366 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc--ccc
Confidence            34699999999999999999986 7899999999999999995442  2 1 11    68999999998876542  269


Q ss_pred             cEEEEcCC
Q 027945          119 DTVVMNPP  126 (216)
Q Consensus       119 D~v~~npp  126 (216)
                      |.||.|.|
T Consensus       367 D~vIVDl~  374 (508)
T COG4262         367 DVVIVDLP  374 (508)
T ss_pred             cEEEEeCC
Confidence            99999887

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=98.11  E-value=0.00011  Score=58.54  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=66.4

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-------CeEEEEcccccccccccCCCc-ccE
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRVCSVGH-VDT  120 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~-fD~  120 (216)
                      ...||++|+|+|..++.++....++|...|.. ..++..+.|...++.       .+.+...++...+........ ||+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            45799999999999999998766799999984 455555555433322       455666666654443323334 899


Q ss_pred             EE-EcCCCCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 027945          121 VV-MNPPFGTRKKGVDMDFLSMALKVASQAVYSL  153 (216)
Q Consensus       121 v~-~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~  153 (216)
                      |+ +|+.|...........+...+...+ .+++.
T Consensus       166 ilasDvvy~~~~~e~Lv~tla~ll~~~~-~i~l~  198 (248)
T KOG2793|consen  166 ILASDVVYEEESFEGLVKTLAFLLAKDG-TIFLA  198 (248)
T ss_pred             EEEeeeeecCCcchhHHHHHHHHHhcCC-eEEEE
Confidence            99 5777776655555555555554444 44443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.09  E-value=4.7e-05  Score=60.75  Aligned_cols=93  Identities=19%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .+...+..+|+|+|+|+|.++..+++. +..+++..|+ |..++.++.     ..+++++.+|+++ +.+  .   +|++
T Consensus        95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~-~~P--~---~D~~  162 (241)
T PF00891_consen   95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFD-PLP--V---ADVY  162 (241)
T ss_dssp             HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTT-CCS--S---ESEE
T ss_pred             cccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHh-hhc--c---ccce
Confidence            333445579999999999999999965 5669999999 889988888     2279999999983 333  3   8999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++.-.+|.-.+......|+++....+
T Consensus       163 ~l~~vLh~~~d~~~~~iL~~~~~al~  188 (241)
T PF00891_consen  163 LLRHVLHDWSDEDCVKILRNAAAALK  188 (241)
T ss_dssp             EEESSGGGS-HHHHHHHHHHHHHHSE
T ss_pred             eeehhhhhcchHHHHHHHHHHHHHhC
Confidence            98777766655666677777777654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=98.04  E-value=1.4e-05  Score=65.09  Aligned_cols=74  Identities=20%  Similarity=0.234  Sum_probs=59.3

Q ss_pred             EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +++|++||.|.++.-+.+.|...+.++|+++.+++..+.|...     .++++|+.+..... ....+|++++.||....
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~~-~~~~~D~l~~gpPCq~f   75 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKD-FIPDIDLLTGGFPCQPF   75 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchhh-cCCCCCEEEeCCCChhh
Confidence            6899999999999999988887899999999999999998753     25677777765432 01249999999998654

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PHA01634 hypothetical protein

Probab=98.03  E-value=3.4e-05  Score=54.60  Aligned_cols=75  Identities=20%  Similarity=0.245  Sum_probs=58.3

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ...+++|+|+|++.|.-++..+.+|+.+|+++|.++...+..+.+++.+.+ .--....++.   .   ..+.||+.+.|
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~---~---~Y~~~Di~~iD   99 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWN---G---EYEDVDIFVMD   99 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeeccccc---c---cCCCcceEEEE
Confidence            458899999999999999999998999999999999999999999988754 2122222222   1   23459999987


Q ss_pred             CC
Q 027945          125 PP  126 (216)
Q Consensus       125 pp  126 (216)
                      .-
T Consensus       100 Ce  101 (156)
T PHA01634        100 CE  101 (156)
T ss_pred             cc
Confidence            53

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=3.6e-05  Score=60.37  Aligned_cols=92  Identities=24%  Similarity=0.292  Sum_probs=63.3

Q ss_pred             HHHHHHHHhhcC-CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe-EEEEccccccccc
Q 027945           34 SRMLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWR  111 (216)
Q Consensus        34 ~~~l~~~~~~~~-~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~  111 (216)
                      ...|..++..+. ..+++++||+|+.||.++..+.++|+.+|+++|....-+..-   ++. +.++ .....|+..+...
T Consensus        64 ~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~-d~rV~~~E~tN~r~l~~~  139 (245)
T COG1189          64 GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRN-DPRVIVLERTNVRYLTPE  139 (245)
T ss_pred             HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---Hhc-CCcEEEEecCChhhCCHH
Confidence            445555555555 468899999999999999999999999999999864332221   111 1133 4446666665554


Q ss_pred             ccCCCcccEEEEcCCCCCC
Q 027945          112 VCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       112 ~~~~~~fD~v~~npp~~~~  130 (216)
                      + -.+..|++++|-.|...
T Consensus       140 ~-~~~~~d~~v~DvSFISL  157 (245)
T COG1189         140 D-FTEKPDLIVIDVSFISL  157 (245)
T ss_pred             H-cccCCCeEEEEeehhhH
Confidence            4 32358999999988754

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.99  E-value=2.4e-05  Score=62.27  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ...++||+|+|.|.++..++.. ..+|+++|.|+.|....+++    |  .+++  |..+.....   .+||+|.|--..
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g--~~vl--~~~~w~~~~---~~fDvIscLNvL  161 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G--FTVL--DIDDWQQTD---FKFDVISCLNVL  161 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C--CeEE--ehhhhhccC---CceEEEeehhhh
Confidence            4568999999999999999985 55899999999886665554    2  4433  222222222   249999983332


Q ss_pred             CCCCCCCCHHHHHHHHhh
Q 027945          128 GTRKKGVDMDFLSMALKV  145 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~  145 (216)
                      .  +.......++++.+.
T Consensus       162 D--Rc~~P~~LL~~i~~~  177 (265)
T PF05219_consen  162 D--RCDRPLTLLRDIRRA  177 (265)
T ss_pred             h--ccCCHHHHHHHHHHH
Confidence            2  222333445544443

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.88  E-value=0.00025  Score=59.97  Aligned_cols=85  Identities=16%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             cCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccE
Q 027945           44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      +.+.++.+|||++|-.|.=+..+|..  +.+.+++.|.+...++..+.|+.+.|+ +..+++.|..+++... .-++||.
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-~~~~fDR  315 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-FPGSFDR  315 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-cCcccce
Confidence            34668899999999999987777753  566899999999999999999999999 6778888988765332 1124999


Q ss_pred             EEEcCCCCC
Q 027945          121 VVMNPPFGT  129 (216)
Q Consensus       121 v~~npp~~~  129 (216)
                      |+.|-|...
T Consensus       316 VLLDAPCSG  324 (460)
T KOG1122|consen  316 VLLDAPCSG  324 (460)
T ss_pred             eeecCCCCC
Confidence            999999876

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.84  E-value=0.00016  Score=55.91  Aligned_cols=107  Identities=12%  Similarity=0.040  Sum_probs=74.0

Q ss_pred             CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-Ce-EEEEccccccccccc-----CCCcccEE
Q 027945           50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRNLEWRVC-----SVGHVDTV  121 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~-~~~~~d~~~~~~~~~-----~~~~fD~v  121 (216)
                      .+|||+|||||--+..++++ +...-...|+++......+..+...+. ++ ..+..|+........     ....||.|
T Consensus        27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            36999999999999999975 444677899999888888888877766 33 456777766544332     12359999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      ++--..|-.........++.+.+.++ +++.++..|
T Consensus       107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen  107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            98666666555555566666666655 455555444

The function of this family is unknown.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.83  E-value=5.7e-05  Score=58.94  Aligned_cols=79  Identities=19%  Similarity=0.313  Sum_probs=65.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      .-..++|+|||.|.+...+...+..+++.+|.+..|++.++.. +.+++......+|=+.+++...+   +|+|++....
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens---~DLiisSlsl  147 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENS---VDLIISSLSL  147 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhcccccccc---hhhhhhhhhh
Confidence            3458999999999999999988999999999999999998775 33555667778887777776656   9999998777


Q ss_pred             CCC
Q 027945          128 GTR  130 (216)
Q Consensus       128 ~~~  130 (216)
                      |+.
T Consensus       148 HW~  150 (325)
T KOG2940|consen  148 HWT  150 (325)
T ss_pred             hhh
Confidence            765

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.78  E-value=5.9e-05  Score=61.98  Aligned_cols=94  Identities=19%  Similarity=0.259  Sum_probs=66.1

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-  112 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-  112 (216)
                      -|+.+++..+...++...+|.--|.|+-+..+.+. +.++++|+|.|+.+++.|++++.....++.++++++.++.... 
T Consensus         7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen    7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHH
T ss_pred             ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHH
Confidence            35555556556678889999999999999999965 4579999999999999999998876668999999998865332 


Q ss_pred             -c-CCCcccEEEEcCCCC
Q 027945          113 -C-SVGHVDTVVMNPPFG  128 (216)
Q Consensus       113 -~-~~~~fD~v~~npp~~  128 (216)
                       . ...++|.|++|.-..
T Consensus        87 ~~~~~~~~dgiL~DLGvS  104 (310)
T PF01795_consen   87 ELNGINKVDGILFDLGVS  104 (310)
T ss_dssp             HTTTTS-EEEEEEE-S--
T ss_pred             HccCCCccCEEEEccccC
Confidence             1 223599999976543

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.76  E-value=0.001  Score=53.89  Aligned_cols=112  Identities=13%  Similarity=0.051  Sum_probs=77.0

Q ss_pred             HHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHH-cC--CCeEEEEeCCHHHHHHHHHHHHhcCC-C-eEEEEcccccc
Q 027945           35 RMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRNL  108 (216)
Q Consensus        35 ~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~-~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~  108 (216)
                      .++...+..+.. -...+|||+.||.|...+.... .+  ...+...|.++..++..+..++..|+ + ++|.++|+++.
T Consensus       121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            334444443322 3456999999999998777664 33  36999999999999999999999999 4 49999999985


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCCCCHH-HHHHHHhhc
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMD-FLSMALKVA  146 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~-~l~~~~~~~  146 (216)
                      ..-..-.-+.++++..--|....+...+. .+.-+....
T Consensus       201 ~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al  239 (311)
T PF12147_consen  201 DSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARAL  239 (311)
T ss_pred             hHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHh
Confidence            32211111379999887877765544332 344444443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK11524 putative methyltransferase; Provisional

Probab=97.75  E-value=0.00014  Score=59.55  Aligned_cols=58  Identities=22%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh
Q 027945           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (216)
Q Consensus        34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~   93 (216)
                      ..++..++.. ...++..|||++||||..++++.+.+. +.+|+|++++.++.|+.++..
T Consensus       195 ~~L~erlI~~-~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILA-SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHH-hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            4455555443 345788999999999999999999766 999999999999999999864

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.75  E-value=0.0006  Score=55.16  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             CCCEEEEecCCcch----HHHHHHHcC------CCeEEEEeCCHHHHHHHHHHHHh-----c----------------C-
Q 027945           48 SNKVVADFGCGCGT----LGAAATLLG------ADQVIAIDIDSDSLELASENAAD-----L----------------E-   95 (216)
Q Consensus        48 ~~~~vLD~g~G~G~----~~~~l~~~~------~~~v~~~D~~~~~~~~a~~~~~~-----~----------------~-   95 (216)
                      ..-+|+-.||+||-    +++.+.+..      .-+++|+|+|..+++.|+.-.-.     .                + 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            45699999999993    344444432      24899999999999998752111     0                1 


Q ss_pred             C--------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHh
Q 027945           96 L--------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAAL  167 (216)
Q Consensus        96 ~--------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      .        .|.|...|+..-.+..+.   ||+|+|=                        .|.+.....+...+...+.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~---fD~IfCR------------------------NVLIYFd~~~q~~il~~f~  228 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGK---FDLIFCR------------------------NVLIYFDEETQERILRRFA  228 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCC---CCEEEEc------------------------ceEEeeCHHHHHHHHHHHH
Confidence            0        467777887765532223   9999994                        3444455555556666665


Q ss_pred             hhcCCccceEEEEEeecCC
Q 027945          168 RDFNASSAEVLCELRYDVP  186 (216)
Q Consensus       168 ~~l~~~~~~~~~~~~~~~~  186 (216)
                      ..|+ ++|.++.-+...++
T Consensus       229 ~~L~-~gG~LflG~sE~~~  246 (268)
T COG1352         229 DSLK-PGGLLFLGHSETIP  246 (268)
T ss_pred             HHhC-CCCEEEEccCcccC
Confidence            5555 66666655554443

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.69  E-value=0.00021  Score=58.43  Aligned_cols=95  Identities=22%  Similarity=0.232  Sum_probs=58.3

Q ss_pred             CCEEEEecCCcch----HHHHHHHc-C----CCeEEEEeCCHHHHHHHHHHHHh-----------------------cC-
Q 027945           49 NKVVADFGCGCGT----LGAAATLL-G----ADQVIAIDIDSDSLELASENAAD-----------------------LE-   95 (216)
Q Consensus        49 ~~~vLD~g~G~G~----~~~~l~~~-~----~~~v~~~D~~~~~~~~a~~~~~~-----------------------~~-   95 (216)
                      .-+|+..||+||-    +++.+... +    .-+++|+|+|+.+++.|+.-.-.                       .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999994    33333332 1    23799999999999999874200                       01 


Q ss_pred             ------C--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945           96 ------L--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus        96 ------~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                            +  .++|.+.|+.+.+...  .++||+|+|--.+.+.........++.+...
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~  251 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFCRNVMIYFDKTTQERILRRFVPL  251 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCcc--CCCcceeeHhhHHhcCCHHHHHHHHHHHHHH
Confidence                  1  4788899988744321  1249999995454444333333444444433

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.69  E-value=7.5e-05  Score=56.92  Aligned_cols=86  Identities=26%  Similarity=0.275  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhhcC-CC--CCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           33 ASRMLYTAENSFG-DV--SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        33 ~~~~l~~~~~~~~-~~--~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      +...|.++...+. ..  ++.++||+||+.|+++..+.+++  ..+|+|+|+.+.         .. -..+..+++|..+
T Consensus         5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-~~~~~~i~~d~~~   74 (181)
T PF01728_consen    5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-LQNVSFIQGDITN   74 (181)
T ss_dssp             HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--TTEEBTTGGGEE
T ss_pred             HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-ccceeeeecccch
Confidence            3456677777666 22  44799999999999999999886  579999999875         10 0135555666544


Q ss_pred             cccc------c-cCCCcccEEEEcCCCC
Q 027945          108 LEWR------V-CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       108 ~~~~------~-~~~~~fD~v~~npp~~  128 (216)
                      ....      . ...+++|+|++|....
T Consensus        75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~  102 (181)
T PF01728_consen   75 PENIKDIRKLLPESGEKFDLVLSDMAPN  102 (181)
T ss_dssp             EEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred             hhHHHhhhhhccccccCcceeccccccC
Confidence            2110      0 0113599999998433

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.64  E-value=6.9e-05  Score=60.59  Aligned_cols=96  Identities=23%  Similarity=0.229  Sum_probs=69.8

Q ss_pred             CCCEEEEecCCcchHHH-HHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           48 SNKVVADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~-~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .+..|+|+++|.|.+++ .+...|+..|+++|.+|.+++..+++++.|++  ...++.+|....-+.. .   .|.|...
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~-~---AdrVnLG  269 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRL-R---ADRVNLG  269 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccc-c---chheeec
Confidence            44799999999999999 67777899999999999999999999999987  5677788877654444 4   7887752


Q ss_pred             -CCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945          125 -PPFGTRKKGVDMDFLSMALKVASQAVY  151 (216)
Q Consensus       125 -pp~~~~~~~~~~~~l~~~~~~~~~~~~  151 (216)
                       .|    ....-....-++++..++.+.
T Consensus       270 LlP----Sse~~W~~A~k~Lk~eggsil  293 (351)
T KOG1227|consen  270 LLP----SSEQGWPTAIKALKPEGGSIL  293 (351)
T ss_pred             ccc----ccccchHHHHHHhhhcCCcEE
Confidence             22    222333344445555444333

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.61  E-value=0.0002  Score=56.15  Aligned_cols=55  Identities=29%  Similarity=0.405  Sum_probs=41.1

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~   89 (216)
                      |..+...++...     ..++..|||++||+|..++++.+.+. +.+|+|+++..++.|++
T Consensus       177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            455555555443     34688999999999999999999766 89999999999999864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=97.60  E-value=0.00034  Score=55.40  Aligned_cols=47  Identities=23%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      .++..|||++||+|..+++..+.+. +.+|+|++++..+.+.++++..
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            4778999999999999999998766 8999999999999999888753

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.60  E-value=0.0003  Score=52.62  Aligned_cols=68  Identities=18%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             EEEeCCHHHHHHHHHHHHhcC----CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945           75 IAIDIDSDSLELASENAADLE----LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus        75 ~~~D~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|+|+|+.|++.|+++.+..+    .+++++++|+.+++..+++   ||+|++.-.++..  ......++++.+.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~---fD~v~~~~~l~~~--~d~~~~l~ei~rvLk   72 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCE---FDAVTMGYGLRNV--VDRLRAMKEMYRVLK   72 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCC---eeEEEecchhhcC--CCHHHHHHHHHHHcC
Confidence            489999999999987765322    1689999999998876655   9999997555443  344567788877765

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.00018  Score=52.32  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV  112 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~  112 (216)
                      ...+..+.+|+|+|.|.+.+..++.|....+|+|++|-.+..++-.+-+.|+  ...|..-|+......+
T Consensus        69 ~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d  138 (199)
T KOG4058|consen   69 RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD  138 (199)
T ss_pred             cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence            3344468999999999999999999877999999999999999988877777  5778888887776665

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=0.00078  Score=54.82  Aligned_cols=94  Identities=18%  Similarity=0.251  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      .+-++.+.+..+...++...+|.--|.|.-+..+....  .++++|+|.|+.+++.|+..+...+-++.++++++.++..
T Consensus         8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~   87 (314)
T COG0275           8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE   87 (314)
T ss_pred             cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH
Confidence            34567777777777788999999999999999988753  4689999999999999999998877789999999877654


Q ss_pred             ccc--CCCcccEEEEcCC
Q 027945          111 RVC--SVGHVDTVVMNPP  126 (216)
Q Consensus       111 ~~~--~~~~fD~v~~npp  126 (216)
                      ...  ..+++|-|++|.-
T Consensus        88 ~l~~~~i~~vDGiL~DLG  105 (314)
T COG0275          88 ALKELGIGKVDGILLDLG  105 (314)
T ss_pred             HHHhcCCCceeEEEEecc
Confidence            321  2245888887653

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.56  E-value=0.00017  Score=59.87  Aligned_cols=73  Identities=25%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +++|++||.|.+++-+.+.|...+.++|+++.+.+.-+.|..      ....+|+.+.....-.. .+|+++.-||....
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f   74 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF   74 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccccccccc-cceEEEeccCCceE
Confidence            799999999999999999887789999999999999999974      77889998876432110 29999999997554

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.52  E-value=0.0016  Score=50.71  Aligned_cols=73  Identities=22%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .+.++.|+||--|.+..++.+.+ +..+++.|+++..++.|..+...+++  ++++..+|.+........   +|+|+.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~---~d~ivI   91 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDE---IDVIVI   91 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCC---cCEEEE
Confidence            45569999999999999999864 77999999999999999999999988  789999998765544434   898885

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=5.6e-05  Score=55.82  Aligned_cols=121  Identities=13%  Similarity=0.139  Sum_probs=75.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCc-chHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC----CeE
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL----DID   99 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~-G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~   99 (216)
                      ||+.+.++..+|......    .+.+||++|.|- |..++.+|. .+...|..+|-+..+++..++..-.|..    ++.
T Consensus        11 wpseeala~~~l~~~n~~----rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~   86 (201)
T KOG3201|consen   11 WPSEEALAWTILRDPNKI----RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC   86 (201)
T ss_pred             cccHHHHHHHHHhchhHH----hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence            777777777777665433    678999999994 445666663 3567999999999999998887766532    333


Q ss_pred             EEEcccccccccccCCCcccEEEE-cCCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945          100 FVQCDIRNLEWRVCSVGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVASQAVY  151 (216)
Q Consensus       100 ~~~~d~~~~~~~~~~~~~fD~v~~-npp~~~~~~~~~~~~l~~~~~~~~~~~~  151 (216)
                      ++..+........ .-.+||.|++ |.-|...-.......++..+++.+..++
T Consensus        87 vlrw~~~~aqsq~-eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~  138 (201)
T KOG3201|consen   87 VLRWLIWGAQSQQ-EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL  138 (201)
T ss_pred             hhHHHHhhhHHHH-hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence            3333332222111 1124999994 7776654333444556666665554333

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.51  E-value=0.0016  Score=52.70  Aligned_cols=122  Identities=17%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhcC----CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh----c---------
Q 027945           32 IASRMLYTAENSFG----DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD----L---------   94 (216)
Q Consensus        32 ~~~~~l~~~~~~~~----~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~----~---------   94 (216)
                      .-..++..+...++    .....+||-+|||.|+++..+|.+|. .+.|.|.|-.|+-...-.+..    +         
T Consensus        36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~  114 (270)
T PF07942_consen   36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH  114 (270)
T ss_pred             HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence            44455555554433    23456999999999999999999888 899999999887554443221    0         


Q ss_pred             ----------------------------CCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945           95 ----------------------------ELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA  146 (216)
Q Consensus        95 ----------------------------~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~  146 (216)
                                                  ..+.....+|+.+.-......++||.|+..  |.-.........++.+.+.+
T Consensus       115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDTA~Ni~~Yi~tI~~lL  192 (270)
T PF07942_consen  115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDTAENIIEYIETIEHLL  192 (270)
T ss_pred             cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeechHHHHHHHHHHHHHh
Confidence                                        003455666766654443223469998875  44334444455566555554


Q ss_pred             C-CcEEEEecC
Q 027945          147 S-QAVYSLHKT  156 (216)
Q Consensus       147 ~-~~~~~~~~~  156 (216)
                      + +++++=++|
T Consensus       193 kpgG~WIN~GP  203 (270)
T PF07942_consen  193 KPGGYWINFGP  203 (270)
T ss_pred             ccCCEEEecCC
Confidence            4 455554444

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=97.50  E-value=0.0006  Score=60.34  Aligned_cols=104  Identities=17%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc---C--CCeEEEEeCCHHHHHHHHHHHHhcCC-
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---G--ADQVIAIDIDSDSLELASENAADLEL-   96 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~---~--~~~v~~~D~~~~~~~~a~~~~~~~~~-   96 (216)
                      .+.+.||.++...+...+ .. ..-++..+.|+.||+|.+.+...+.   +  ...++|.|.++.++..++.|+...+. 
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~-~~-~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~  271 (501)
T TIGR00497       194 GGEFFTPQDISELLARIA-IG-KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID  271 (501)
T ss_pred             CceeeCcHHHHHHHHHHh-cc-CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence            456778888776654432 21 1124468999999999988765431   2  24689999999999999999766544 


Q ss_pred             --CeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945           97 --DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        97 --~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                        ......+|....+... ...+||.|++||||..
T Consensus       272 ~~t~~~~~~dtl~~~d~~-~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       272 YANFNIINADTLTTKEWE-NENGFEVVVSNPPYSI  305 (501)
T ss_pred             ccccCcccCCcCCCcccc-ccccCCEEeecCCccc
Confidence              2334445544322111 1124999999999975

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.46  E-value=0.011  Score=46.20  Aligned_cols=144  Identities=15%  Similarity=0.081  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      .+++.++..+ ..+...++.+||-+|+.+|.....++.. + .+.|+++|.++...+..-.-++.- .|+-.+..|+...
T Consensus        57 KLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~DAr~P  134 (229)
T PF01269_consen   57 KLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPILEDARHP  134 (229)
T ss_dssp             HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEES-TTSG
T ss_pred             HHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-CceeeeeccCCCh
Confidence            4455444433 3335567889999999999988888864 4 568999999997765554443332 2789999999864


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCc-------cHHHHHHHHhhhcCCccceEEE
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTS-------TREHVKKAALRDFNASSAEVLC  179 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~  179 (216)
                      .....--+..|+|++|-.    ......-++..+...++  +.+.++.+..       ..+.+.+.. +.|...+.+.+.
T Consensus       135 ~~Y~~lv~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~-~~L~~~~~~~~e  209 (229)
T PF01269_consen  135 EKYRMLVEMVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEV-KKLKEEGFKPLE  209 (229)
T ss_dssp             GGGTTTS--EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHH-HHHHCTTCEEEE
T ss_pred             HHhhcccccccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHH-HHHHHcCCChhe
Confidence            433322235999999876    22333333344433333  3444444331       233444444 545434445544


Q ss_pred             EE
Q 027945          180 EL  181 (216)
Q Consensus       180 ~~  181 (216)
                      +.
T Consensus       210 ~i  211 (229)
T PF01269_consen  210 QI  211 (229)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=97.42  E-value=0.00047  Score=55.32  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=82.1

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .+..++.|+-+| -.-..+++++-.+ +.++..+|+|+..+....+.++..|. +++.+.-|+....+.+ ...+||+.+
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~-~~~kFDvfi  226 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED-LKRKFDVFI  226 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH-HHhhCCeee
Confidence            567888999999 6666777777554 77999999999999999999999999 5999999999866655 334699999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC-----CcEEEEecCccHHHHHHHH
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS-----QAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  166 (216)
                      .|||+-..   ....|+.+-...++     +..++.......+.+.+..
T Consensus       227 TDPpeTi~---alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQ  272 (354)
T COG1568         227 TDPPETIK---ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQ  272 (354)
T ss_pred             cCchhhHH---HHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHH
Confidence            99995432   12234443333332     2333444444555555544

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.40  E-value=0.00085  Score=53.33  Aligned_cols=72  Identities=25%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...+|+|+|||.--+++.+... ....++|+|||..+++.....+...+...++...|...-+... .   .|+.+.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~-~---~DlaLl  177 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKE-P---ADLALL  177 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTS-E---ESEEEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCC-C---cchhhH
Confidence            4679999999999999988864 3459999999999999999999998888888888988765554 3   788886

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.39  E-value=0.00074  Score=49.10  Aligned_cols=84  Identities=19%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCC-------CCCHHHHHHHH
Q 027945           73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK-------GVDMDFLSMAL  143 (216)
Q Consensus        73 ~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~-------~~~~~~l~~~~  143 (216)
                      +|+|.||.+++++.++++++..++  ++++++.+=..+...- ..+++|++++|.-|-+..+       ...+.-++.++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i-~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYI-PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhC-ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            699999999999999999999887  6888877765544332 1135999999999966522       23446677777


Q ss_pred             hhcC--CcEEEEecCc
Q 027945          144 KVAS--QAVYSLHKTS  157 (216)
Q Consensus       144 ~~~~--~~~~~~~~~~  157 (216)
                      +.+.  |.+.+++.++
T Consensus        80 ~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHEEEEEEEEEEE--S
T ss_pred             HhhccCCEEEEEEeCC
Confidence            7654  5666777774

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.36  E-value=0.0033  Score=48.72  Aligned_cols=98  Identities=27%  Similarity=0.397  Sum_probs=54.3

Q ss_pred             ccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEE
Q 027945           22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV  101 (216)
Q Consensus        22 ~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~  101 (216)
                      ....||..|-  ..++.++.   ..++...|.|+|||.+.++..+.. + -.|...|+...              +-.+.
T Consensus        51 Qv~~WP~nPv--d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~--------------n~~Vt  109 (219)
T PF05148_consen   51 QVKKWPVNPV--DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAP--------------NPRVT  109 (219)
T ss_dssp             HHCTSSS-HH--HHHHHHHC---TS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEE
T ss_pred             HHhcCCCCcH--HHHHHHHH---hcCCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCC--------------CCCEE
Confidence            3456787643  23333332   123457999999999999966543 2 37999998641              12467


Q ss_pred             EcccccccccccCCCcccEEEEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945          102 QCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV-DMDFLSMALKVAS  147 (216)
Q Consensus       102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~-~~~~l~~~~~~~~  147 (216)
                      .+|....|..+.+   .|++|+-....    +. ...++.++.++++
T Consensus       110 acdia~vPL~~~s---vDv~VfcLSLM----GTn~~~fi~EA~RvLK  149 (219)
T PF05148_consen  110 ACDIANVPLEDES---VDVAVFCLSLM----GTNWPDFIREANRVLK  149 (219)
T ss_dssp             ES-TTS-S--TT----EEEEEEES-------SS-HHHHHHHHHHHEE
T ss_pred             EecCccCcCCCCc---eeEEEEEhhhh----CCCcHHHHHHHHheec
Confidence            7898888887766   99999866633    33 3478888888876

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0013  Score=50.81  Aligned_cols=87  Identities=22%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           31 HIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      +-++..|.++...+.. .++.+|+|+||-.|.-+..+++..  ...|+++|++|         ++... ++.++++|+..
T Consensus        27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~-~V~~iq~d~~~   96 (205)
T COG0293          27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIP-GVIFLQGDITD   96 (205)
T ss_pred             chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCC-CceEEeeeccC
Confidence            4567777777776654 466899999999999999999763  23599999988         33211 58999999887


Q ss_pred             ccccc-----cCCCcccEEEEcCCC
Q 027945          108 LEWRV-----CSVGHVDTVVMNPPF  127 (216)
Q Consensus       108 ~~~~~-----~~~~~fD~v~~npp~  127 (216)
                      -....     -...++|+|++|+.=
T Consensus        97 ~~~~~~l~~~l~~~~~DvV~sD~ap  121 (205)
T COG0293          97 EDTLEKLLEALGGAPVDVVLSDMAP  121 (205)
T ss_pred             ccHHHHHHHHcCCCCcceEEecCCC
Confidence            43221     121237999988653

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.30  E-value=0.0079  Score=50.05  Aligned_cols=100  Identities=12%  Similarity=0.036  Sum_probs=64.1

Q ss_pred             CCCEEEEecCCcchHHHHHHH----c-CCCeEEEEeCCHHHHHHHHHHHHhcC---CCeEEEEcccccccccc--c-CCC
Q 027945           48 SNKVVADFGCGCGTLGAAATL----L-GADQVIAIDIDSDSLELASENAADLE---LDIDFVQCDIRNLEWRV--C-SVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~----~-~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~--~-~~~  116 (216)
                      ++.+++|+|||+|.=+..+.+    . .....+++|+|..+++.+..++....   +.+..+++|..+...-.  . ...
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            556899999999986544433    1 23479999999999999999988322   25666899987742210  0 111


Q ss_pred             cccEEEE-cCCCCCCCCCCCHHHHHHHHh-hcC
Q 027945          117 HVDTVVM-NPPFGTRKKGVDMDFLSMALK-VAS  147 (216)
Q Consensus       117 ~fD~v~~-npp~~~~~~~~~~~~l~~~~~-~~~  147 (216)
                      ...++++ --.++.........+++++.+ .++
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~  188 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALS  188 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCC
Confidence            2555553 223444445566678888877 543

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.26  E-value=0.00062  Score=57.94  Aligned_cols=58  Identities=26%  Similarity=0.347  Sum_probs=50.5

Q ss_pred             EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccc
Q 027945           51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL  108 (216)
Q Consensus        51 ~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~  108 (216)
                      -|||+|+|||.++...++.|+..|+++|.-..|.+.|++....||.  +++++.--..+.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev  128 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence            6899999999999999998988999999999999999999999988  676665544443

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.18  E-value=0.0038  Score=52.26  Aligned_cols=106  Identities=20%  Similarity=0.232  Sum_probs=73.5

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      ..+++|++||.|.+.+-+...|..-+.++|+++.+++.-+.|...    ..+...|..+.....-....+|+++.-||..
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ   78 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ   78 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence            358999999999999999988887899999999999999998753    4667777776544331101499999999986


Q ss_pred             CC-----C------CCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945          129 TR-----K------KGVDMDFLSMALKVASQAVYSLHKTST  158 (216)
Q Consensus       129 ~~-----~------~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (216)
                      ..     +      .+...-.+.++++...+.++++=|..+
T Consensus        79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~g  119 (328)
T COG0270          79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKG  119 (328)
T ss_pred             chhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCch
Confidence            54     1      111122233444444457777666554

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.00042  Score=59.69  Aligned_cols=102  Identities=16%  Similarity=0.138  Sum_probs=80.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccccc-CCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVC-SVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~fD~v  121 (216)
                      .++.+|||.-|++|..++..++.  +..+|++.|.++.+++..+.|.+.|++  .++..+.|+........ ....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            45679999999999999999975  577999999999999999999999988  57888999877543221 11249999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEe
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLH  154 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~  154 (216)
                      =.||-      +....||+.++...+  |.+.+.|
T Consensus       188 DLDPy------Gs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  188 DLDPY------GSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ecCCC------CCccHHHHHHHHHhhcCCEEEEEe
Confidence            99963      566789999988765  4444443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.13  E-value=0.00088  Score=55.73  Aligned_cols=72  Identities=18%  Similarity=0.130  Sum_probs=56.2

Q ss_pred             EEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           52 VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        52 vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      |+|++||.|.++.-+.+.|..-+.++|+++.+.+.-+.|...     .+..+|+.+.......  .+|+++..||....
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~--~~dvl~gg~PCq~f   72 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSDIP--DFDILLGGFPCQPF   72 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhhCC--CcCEEEecCCCccc
Confidence            589999999999999988876778899999999998888642     4456787776533211  38999999997543

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=97.13  E-value=0.00026  Score=59.92  Aligned_cols=62  Identities=23%  Similarity=0.342  Sum_probs=56.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLE  109 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~  109 (216)
                      .+|..|.|++||.|-+.+.++..++ .|++.|+++++++..+.|+..|.+   .++.+..|+.++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            4778999999999999999998775 999999999999999999999987   4899999998876

>PRK10458 DNA cytosine methylase; Provisional

Probab=97.13  E-value=0.0033  Score=54.90  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc--------------cC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV--------------CS  114 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--------------~~  114 (216)
                      .-+++|++||.|.+.+-+...|..-|.++|+++.+.+.-+.|..... ......+|+.+.....              ..
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~  166 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH  166 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhhhhhhcc
Confidence            34999999999999999988887778999999999888888753211 2233445555543210              00


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      -...|+++.-||....
T Consensus       167 ~p~~DvL~gGpPCQ~F  182 (467)
T PRK10458        167 IPDHDVLLAGFPCQPF  182 (467)
T ss_pred             CCCCCEEEEcCCCCcc
Confidence            0138999999998654

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.10  E-value=0.0065  Score=47.22  Aligned_cols=109  Identities=12%  Similarity=0.132  Sum_probs=80.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+||++|-|-|...-.+.+....+-+.+|.+|..++..+.+.-...-++.++.+-+.+..... .++.||-|+.|- 
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L-~d~~FDGI~yDT-  177 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTL-PDKHFDGIYYDT-  177 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccc-cccCcceeEeec-
Confidence            688899999999999999998887778899999999999988876544447888888888765443 223399999873 


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945          127 FGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST  158 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  158 (216)
                      |... ......+.+.+.+.++ +.+|..|+.-+
T Consensus       178 y~e~-yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  178 YSEL-YEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             hhhH-HHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            2111 1223456666777665 68888888754

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.01  E-value=0.0059  Score=47.00  Aligned_cols=65  Identities=17%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcC-------C-CeEEEEcccccccccc
Q 027945           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE-------L-DIDFVQCDIRNLEWRV  112 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~-------~-~~~~~~~d~~~~~~~~  112 (216)
                      +.....|||||.|.+.+.++- .+..-+.|.||--..-+..+++++...       . ++.+...++..+.+..
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~  133 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF  133 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence            445799999999999999995 466688999998777777777776653       2 5777888887766554

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=96.98  E-value=0.0009  Score=54.72  Aligned_cols=79  Identities=23%  Similarity=0.171  Sum_probs=52.3

Q ss_pred             EEEecCCcchHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc----cCCCcccEEEEc
Q 027945           52 VADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV----CSVGHVDTVVMN  124 (216)
Q Consensus        52 vLD~g~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~----~~~~~fD~v~~n  124 (216)
                      -+|||.|.-.+--.+. +.......++|++...+..|..|...|+.  .+.+++.........+    .++..||+++||
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN  185 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN  185 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence            4677766544322222 22345889999999999999999999987  4566555433322221    123349999999


Q ss_pred             CCCCCC
Q 027945          125 PPFGTR  130 (216)
Q Consensus       125 pp~~~~  130 (216)
                      |||...
T Consensus       186 PPFfe~  191 (419)
T KOG2912|consen  186 PPFFEN  191 (419)
T ss_pred             Cchhhc
Confidence            999764

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.96  E-value=0.005  Score=48.04  Aligned_cols=108  Identities=11%  Similarity=0.101  Sum_probs=74.8

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccC--
Q 027945           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCS--  114 (216)
Q Consensus        37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~--  114 (216)
                      ...+....+......|.++|.|.|.++..+...+.++...+|+|+..+.-.+...+....+..++++|+..+...+..  
T Consensus        39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~~I~~~~~~  118 (326)
T KOG0821|consen   39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRFKIEKAFSE  118 (326)
T ss_pred             HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccceehHHhhcch
Confidence            333344445566789999999999999999988888999999999888877777665555788888888765433210  


Q ss_pred             ------C-C-cccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945          115 ------V-G-HVDTVVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus       115 ------~-~-~fD~v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                            . . ..=-|+.|.||+.. ...-+.+++++...
T Consensus       119 ~~~Rpw~d~~p~~H~IGNLPf~i~-~pliik~l~~~s~r  156 (326)
T KOG0821|consen  119 SLKRPWEDDPPNVHIIGNLPFSVS-TPLIIKWLENISCR  156 (326)
T ss_pred             hhcCCcccCCCceEEeccCCcccc-chHHHHHHhhcccc
Confidence                  0 0 12367889998654 23444566655433

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.93  E-value=0.019  Score=41.01  Aligned_cols=90  Identities=29%  Similarity=0.415  Sum_probs=56.9

Q ss_pred             EEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEccccc--ccccccCCCcccEEEEcCC
Q 027945           52 VADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN--LEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        52 vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~--~~~~~~~~~~fD~v~~npp  126 (216)
                      ++|+|||+|... .+.....  ..++++|+++.+++.++......+.. +.+..+|...  .+....  ..||++.+...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDS--ASFDLVISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCC--CceeEEeeeee
Confidence            999999999976 3333222  37999999999998865554332212 6788888776  344331  23999965544


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+...   ....+..+.+...
T Consensus       129 ~~~~~---~~~~~~~~~~~l~  146 (257)
T COG0500         129 LHLLP---PAKALRELLRVLK  146 (257)
T ss_pred             hhcCC---HHHHHHHHHHhcC
Confidence            43332   3455666666554

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.029  Score=43.26  Aligned_cols=94  Identities=18%  Similarity=0.188  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  109 (216)
                      .+++.+|.-+. .++..++.+||=+|+.+|...-.++.. +.+.++++|.++......-.-++.-. ++-.+..|+....
T Consensus        60 KLaAaIl~Gl~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA~~P~  137 (231)
T COG1889          60 KLAAAILKGLK-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDARKPE  137 (231)
T ss_pred             HHHHHHHcCcc-cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-CceeeecccCCcH
Confidence            45555555443 335678899999999999988888864 55689999999877655444443321 6888999997643


Q ss_pred             ccccCCCcccEEEEcCC
Q 027945          110 WRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp  126 (216)
                      ....--++.|+|+.|-.
T Consensus       138 ~Y~~~Ve~VDviy~DVA  154 (231)
T COG1889         138 KYRHLVEKVDVIYQDVA  154 (231)
T ss_pred             HhhhhcccccEEEEecC
Confidence            33222235999998865

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.013  Score=49.02  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc------
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV------  112 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~------  112 (216)
                      ...++.+|||+|+--|.=+..+.+..     ...|++-|.++..+......+..... +..+...|+..++...      
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            45688999999999999887777642     22899999999999888877765544 4444455544433221      


Q ss_pred             cCCCcccEEEEcCCCCCCC---C------------------CCCHHHHHHHHhh---cCCcEEEEecCcc
Q 027945          113 CSVGHVDTVVMNPPFGTRK---K------------------GVDMDFLSMALKV---ASQAVYSLHKTST  158 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~~~---~------------------~~~~~~l~~~~~~---~~~~~~~~~~~~~  158 (216)
                      ....+||.|++|-|.....   +                  ......+.+.++.   ++..+|..|.-..
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp  301 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP  301 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence            1223599999999987651   0                  0123445555444   3458998887654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.74  E-value=0.0079  Score=48.89  Aligned_cols=95  Identities=25%  Similarity=0.313  Sum_probs=53.3

Q ss_pred             CCEEEEecCCcc-hHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHH-hcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945           49 NKVVADFGCGCG-TLGAAATLL-G-ADQVIAIDIDSDSLELASENAA-DLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        49 ~~~vLD~g~G~G-~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~-~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      +.+|+=+|||.= ..++.+++. + ...|+++|+|+.+++.+++-+. ..++  +++++.+|..+.......   ||+|+
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~---~DvV~  197 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKE---YDVVF  197 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccccc---CCEEE
Confidence            359999999954 445666643 3 4589999999999999998877 3343  789999999876654434   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ..---+. ....-.+.+..+.+..+
T Consensus       198 lAalVg~-~~e~K~~Il~~l~~~m~  221 (276)
T PF03059_consen  198 LAALVGM-DAEPKEEILEHLAKHMA  221 (276)
T ss_dssp             E-TT-S-----SHHHHHHHHHHHS-
T ss_pred             Ehhhccc-ccchHHHHHHHHHhhCC
Confidence            6422110 11233456677766655

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.73  E-value=0.0093  Score=47.67  Aligned_cols=82  Identities=28%  Similarity=0.513  Sum_probs=58.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      +....|.|+|||-+.++.   + -..+|++.|+.+              .+-.++.+|....+..+.+   .|++|+-..
T Consensus       179 ~~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~s---vDvaV~CLS  237 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA--------------VNERVIACDMRNVPLEDES---VDVAVFCLS  237 (325)
T ss_pred             cCceEEEecccchhhhhh---c-cccceeeeeeec--------------CCCceeeccccCCcCccCc---ccEEEeeHh
Confidence            345699999999998765   2 244899999864              1347788999998888867   999997555


Q ss_pred             CCCCCCCCCH-HHHHHHHhhcC--CcEEEE
Q 027945          127 FGTRKKGVDM-DFLSMALKVAS--QAVYSL  153 (216)
Q Consensus       127 ~~~~~~~~~~-~~l~~~~~~~~--~~~~~~  153 (216)
                      .    .+.++ .+++++.+++.  |.+|+.
T Consensus       238 L----Mgtn~~df~kEa~RiLk~gG~l~IA  263 (325)
T KOG3045|consen  238 L----MGTNLADFIKEANRILKPGGLLYIA  263 (325)
T ss_pred             h----hcccHHHHHHHHHHHhccCceEEEE
Confidence            3    34433 67888888765  456653

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.68  E-value=0.034  Score=48.27  Aligned_cols=80  Identities=19%  Similarity=0.273  Sum_probs=64.7

Q ss_pred             CCC-EEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNK-VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~-~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      +.. ++|-+|||.-.++..+-..|...++.+|+|+.+++.+............+...|.....+.+.+   ||+|+.=+-
T Consensus        47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedES---FdiVIdkGt  123 (482)
T KOG2352|consen   47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDES---FDIVIDKGT  123 (482)
T ss_pred             hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcc---eeEEEecCc
Confidence            444 9999999999999999998888999999999999888665432222578899999998888877   999997665


Q ss_pred             CCCC
Q 027945          127 FGTR  130 (216)
Q Consensus       127 ~~~~  130 (216)
                      ++..
T Consensus       124 lDal  127 (482)
T KOG2352|consen  124 LDAL  127 (482)
T ss_pred             cccc
Confidence            5554

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.67  E-value=0.0028  Score=49.31  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=61.6

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      .++||+||=+........  +.-.|+.+|+++         .     .-.+.+.|+.+.+.+....++||+|++....+.
T Consensus        53 lrlLEVGals~~N~~s~~--~~fdvt~IDLns---------~-----~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf  116 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTS--GWFDVTRIDLNS---------Q-----HPGILQQDFMERPLPKNESEKFDVISLSLVLNF  116 (219)
T ss_pred             ceEEeecccCCCCccccc--CceeeEEeecCC---------C-----CCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence            599999998665544432  333699999986         1     246789999998765434567999999777766


Q ss_pred             CCC-CCCHHHHHHHHhhcC--Cc-----EEEEecC
Q 027945          130 RKK-GVDMDFLSMALKVAS--QA-----VYSLHKT  156 (216)
Q Consensus       130 ~~~-~~~~~~l~~~~~~~~--~~-----~~~~~~~  156 (216)
                      .+. ...-+.++++.+.+.  +.     +|++...
T Consensus       117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            543 334467777776654  34     6666544

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.66  E-value=0.0057  Score=51.76  Aligned_cols=97  Identities=18%  Similarity=0.153  Sum_probs=70.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++..++|+|||.|......+....+.++|++.++..+..+........+  +..++.+|+...++.+..   ||.+.+.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~---fd~v~~l  185 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNT---FDGVRFL  185 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccc---cCcEEEE
Confidence            35568999999999999999998777999999998877777665555444  455689999998888766   9988863


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcCC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~~  148 (216)
                      -.-.+  .+.....++++.+...+
T Consensus       186 d~~~~--~~~~~~~y~Ei~rv~kp  207 (364)
T KOG1269|consen  186 EVVCH--APDLEKVYAEIYRVLKP  207 (364)
T ss_pred             eeccc--CCcHHHHHHHHhcccCC
Confidence            22111  12345667777776553

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.58  E-value=0.00085  Score=46.34  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=25.8

Q ss_pred             EEecCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           53 ADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        53 LD~g~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ||+|+..|..+..+++.    +..+++++|..+. .+.++..++..+.  +++++.++..+...... .+++|+++.|-.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence            68999999988877753    2237999999985 3333333333333  69999999987644332 224999999864

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=96.44  E-value=0.039  Score=43.87  Aligned_cols=127  Identities=14%  Similarity=0.173  Sum_probs=84.4

Q ss_pred             EEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCCCCCCC
Q 027945           53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        53 LD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~  131 (216)
                      |...|||-.++..+.+ ...++.++|+.|.=....+.|... +-++.+..+|-....... ...++=-+|+.||||....
T Consensus        93 l~~YpGSP~lA~~llR-~qDRl~l~ELHp~D~~~L~~~f~~-d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~  170 (279)
T COG2961          93 LRYYPGSPLLARQLLR-EQDRLVLTELHPSDAPLLRNNFAG-DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKD  170 (279)
T ss_pred             cccCCCCHHHHHHHcc-hhceeeeeecCccHHHHHHHHhCC-CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccccc
Confidence            9999999999999988 455999999999999999988872 227899999966532211 1112368999999998663


Q ss_pred             -CCCCHHHHHHHHhhcCCcEEEEecCcc-HHHHHHHHhhhcCCccceEEEEEe
Q 027945          132 -KGVDMDFLSMALKVASQAVYSLHKTST-REHVKKAALRDFNASSAEVLCELR  182 (216)
Q Consensus       132 -~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  182 (216)
                       .......++++.+.....+|.+-.|-- ++.+.... +.|++.+...+..+.
T Consensus       171 eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~-~~L~~~~i~kiL~iE  222 (279)
T COG2961         171 EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFL-RALEALGIRKILQIE  222 (279)
T ss_pred             HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHH-HHHhhcCccceeeeE
Confidence             223345566666666667777666643 44444443 444434443333333

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.39  E-value=0.0082  Score=52.21  Aligned_cols=66  Identities=18%  Similarity=0.265  Sum_probs=42.0

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEE---eCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAI---DIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++||+|||+|.++..|..++. .++.+   |..+..++.|.++    |+-.-+-......+++.+..   ||+|-|
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~~s~rLPfp~~~---fDmvHc  187 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GVPAMIGVLGSQRLPFPSNA---FDMVHC  187 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----CcchhhhhhccccccCCccc---hhhhhc
Confidence            5899999999999999999875 33333   3334455555444    22111112234557777666   999875

; GO: 0008168 methyltransferase activity

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.36  E-value=0.0082  Score=41.42  Aligned_cols=50  Identities=24%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~   81 (216)
                      .+++.++..-.......+...-+|+|||+|.+...|.+.|. .-+|+|.-.
T Consensus        41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~   90 (112)
T PF07757_consen   41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR   90 (112)
T ss_pred             HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence            35666555544443443455799999999999999998876 678888743

; GO: 0008168 methyltransferase activity

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.16  E-value=0.00085  Score=51.73  Aligned_cols=42  Identities=14%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      .+.++||+|+|.|-++..++-. ..+|+++|+|..|....+..
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence            4579999999999999999874 55899999999888777654

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.03  E-value=0.023  Score=46.27  Aligned_cols=111  Identities=12%  Similarity=0.121  Sum_probs=76.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-----CeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      +..+++|-+|-|.|.+....+++. ..++..+|++...++..+..+...-.     ++.+..+|-..+.... ...+||+
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-~~~~~dV  198 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-KENPFDV  198 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-ccCCceE
Confidence            466899999999999999888874 67999999999999999988876532     6899999988776554 3446999


Q ss_pred             EEEcCC--CCCCCCCCCHHHHHHHHhhcCCcEEEEecCcc
Q 027945          121 VVMNPP--FGTRKKGVDMDFLSMALKVASQAVYSLHKTST  158 (216)
Q Consensus       121 v~~npp--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  158 (216)
                      |+.|-.  -+....--...+.....+.+++..|+++-...
T Consensus       199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence            997532  11110011123445555556655565555443

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.79  E-value=0.072  Score=43.83  Aligned_cols=122  Identities=14%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhhcCC----CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH---HhcC---------
Q 027945           32 IASRMLYTAENSFGD----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA---ADLE---------   95 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~----~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~---------   95 (216)
                      ..+.++..+...++.    ....+||-+|||.|.++..++..|. .+-|-|.+-.|+=...-.+   +..+         
T Consensus       130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh  208 (369)
T KOG2798|consen  130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH  208 (369)
T ss_pred             hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence            344455555444332    2345899999999999999998876 6667777766653332222   1100         


Q ss_pred             ---------------------------C--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945           96 ---------------------------L--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA  146 (216)
Q Consensus        96 ---------------------------~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~  146 (216)
                                                 .  .....-||+.+.-......+.||+|+..  |.-.....-+++++.+.+.+
T Consensus       209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa~NileYi~tI~~iL  286 (369)
T KOG2798|consen  209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTAHNILEYIDTIYKIL  286 (369)
T ss_pred             ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeechHHHHHHHHHHHHhc
Confidence                                       0  1222345555543332222459998875  44344455567777776665


Q ss_pred             C-CcEEEEecC
Q 027945          147 S-QAVYSLHKT  156 (216)
Q Consensus       147 ~-~~~~~~~~~  156 (216)
                      . +++++=+.|
T Consensus       287 k~GGvWiNlGP  297 (369)
T KOG2798|consen  287 KPGGVWINLGP  297 (369)
T ss_pred             cCCcEEEeccc
Confidence            4 555554443

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.75  E-value=0.062  Score=44.78  Aligned_cols=88  Identities=17%  Similarity=0.075  Sum_probs=71.1

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      ...+|+|.|.|..+..+.+ -..++-+++.+...+-.+..++. .|  ++.+-+|.+.- .+.     -|+|++---.|+
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~-~P~-----~daI~mkWiLhd  248 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQD-TPK-----GDAIWMKWILHD  248 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC--cceeccccccc-CCC-----cCeEEEEeeccc
Confidence            6899999999999999988 44479999999888877777775 44  78888888776 332     689998777777


Q ss_pred             CCCCCCHHHHHHHHhhcC
Q 027945          130 RKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       130 ~~~~~~~~~l~~~~~~~~  147 (216)
                      -.+..-..+++++.+..+
T Consensus       249 wtDedcvkiLknC~~sL~  266 (342)
T KOG3178|consen  249 WTDEDCVKILKNCKKSLP  266 (342)
T ss_pred             CChHHHHHHHHHHHHhCC
Confidence            777778899999988876

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.72  E-value=0.12  Score=40.27  Aligned_cols=115  Identities=18%  Similarity=0.170  Sum_probs=54.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-----cCCCc
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-----CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~~  117 (216)
                      ++..|+|+|.-.|+-.+.+|+.     +.++|+|+|++............-..-+++++++|..+...-.     .....
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            6679999999999888877752     4569999999643332221111001127999999987643222     11123


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHH
Q 027945          118 VDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKA  165 (216)
Q Consensus       118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..+|+.|---.   .......++........+-|.++-....+++...
T Consensus       112 ~vlVilDs~H~---~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~  156 (206)
T PF04989_consen  112 PVLVILDSSHT---HEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPES  156 (206)
T ss_dssp             SEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS
T ss_pred             ceEEEECCCcc---HHHHHHHHHHhCccCCCCCEEEEEeccccccccc
Confidence            56777764311   1233344554444444566666555444444443

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=95.58  E-value=0.042  Score=43.90  Aligned_cols=102  Identities=17%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             EEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCCCCCCC
Q 027945           53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        53 LD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~  131 (216)
                      +....||-.++..+.+. ..+.+.+|+.+.-.+..+.++... -++.+++.|.++..... ....+=-+|+.||||....
T Consensus        62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~-~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~  139 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRD-RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKD  139 (245)
T ss_dssp             --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TT-S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STT
T ss_pred             cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccC-CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCch
Confidence            88999999999999885 559999999999999998887652 27899999988843221 1111257999999998763


Q ss_pred             C-CCCHHHHHHHHhhcCCcEEEEecC
Q 027945          132 K-GVDMDFLSMALKVASQAVYSLHKT  156 (216)
Q Consensus       132 ~-~~~~~~l~~~~~~~~~~~~~~~~~  156 (216)
                      + ......+.++.+--+..+|.+=.|
T Consensus       140 dy~~v~~~l~~a~kR~~~G~~~iWYP  165 (245)
T PF04378_consen  140 DYQRVVDALAKALKRWPTGVYAIWYP  165 (245)
T ss_dssp             HHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEee
Confidence            2 223345566666555566666555

; PDB: 2OO3_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.089  Score=44.18  Aligned_cols=73  Identities=16%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             cccCCCCHHHHHHH-------HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc---------CCCeEEEEeCCHHHHHH
Q 027945           23 LEQYPTGPHIASRM-------LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLEL   86 (216)
Q Consensus        23 ~~~~~t~~~~~~~~-------l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~---------~~~~v~~~D~~~~~~~~   86 (216)
                      .++|-|.+++....       +......+..+.+..++|+|+|+|.++..+.+.         ...++..+|+|+...+.
T Consensus        45 ~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~  124 (370)
T COG1565          45 KGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR  124 (370)
T ss_pred             cCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence            34577776643322       122222334556678999999999998877752         24589999999999988


Q ss_pred             HHHHHHhcC
Q 027945           87 ASENAADLE   95 (216)
Q Consensus        87 a~~~~~~~~   95 (216)
                      -+.+++...
T Consensus       125 Qk~~L~~~~  133 (370)
T COG1565         125 QKETLKATE  133 (370)
T ss_pred             HHHHHhccc
Confidence            888887653

>PRK11524 putative methyltransferase; Provisional

Probab=95.47  E-value=0.059  Score=44.16  Aligned_cols=63  Identities=14%  Similarity=0.285  Sum_probs=38.4

Q ss_pred             CeEEEEcccccccccccCCCcccEEEEcCCCCCCCC----------CCC----HHHHHHHHhhcC--CcEEEEecCccHH
Q 027945           97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK----------GVD----MDFLSMALKVAS--QAVYSLHKTSTRE  160 (216)
Q Consensus        97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~----------~~~----~~~l~~~~~~~~--~~~~~~~~~~~~~  160 (216)
                      ..+++++|+.+..... .+++||+|++||||.....          ...    ..++..+.+.++  +.+|+.+......
T Consensus         8 ~~~i~~gD~~~~l~~l-~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~   86 (284)
T PRK11524          8 AKTIIHGDALTELKKI-PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMP   86 (284)
T ss_pred             CCEEEeccHHHHHHhc-ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence            3578999999865332 2234999999999975211          001    245666666664  4666665554433

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.34  E-value=0.59  Score=35.01  Aligned_cols=89  Identities=18%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      +.+-+..+...+...  .....+|+=+||=+-...+.-......+++..|+|.....        .+.+ +++.=|....
T Consensus         8 s~~T~~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~~~-~F~fyD~~~p   76 (162)
T PF10237_consen    8 SDETAEFLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FGGD-EFVFYDYNEP   76 (162)
T ss_pred             CHHHHHHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cCCc-ceEECCCCCh
Confidence            334444455554442  2245789998887766665552234558999999974322        1212 3454454432


Q ss_pred             cc-cccCCCcccEEEEcCCCC
Q 027945          109 EW-RVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus       109 ~~-~~~~~~~fD~v~~npp~~  128 (216)
                      .. ...-.++||+|++||||-
T Consensus        77 ~~~~~~l~~~~d~vv~DPPFl   97 (162)
T PF10237_consen   77 EELPEELKGKFDVVVIDPPFL   97 (162)
T ss_pred             hhhhhhcCCCceEEEECCCCC
Confidence            11 111234699999999993

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.13  E-value=0.13  Score=41.39  Aligned_cols=45  Identities=18%  Similarity=0.186  Sum_probs=35.3

Q ss_pred             CCEEEEecCCcchHHHHHHHc---------CCCeEEEEeCCHHHHHHHHHHHHh
Q 027945           49 NKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAAD   93 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~---------~~~~v~~~D~~~~~~~~a~~~~~~   93 (216)
                      .-+|+|+|+|+|.++..+.+.         ...+++.+|+|+...+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            469999999999999888763         124899999999999888888866

; PDB: 4F3N_A 1ZKD_B.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.08  E-value=0.29  Score=39.60  Aligned_cols=102  Identities=19%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             CEEEEecCCcc--hHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccccc---CCCccc--
Q 027945           50 KVVADFGCGCG--TLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVC---SVGHVD--  119 (216)
Q Consensus        50 ~~vLD~g~G~G--~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~---~~~~fD--  119 (216)
                      .-.||+|||--  ....++++.  +.++|+-+|.||..+..++..+..+.. ...++++|+.+...-..   ..+-+|  
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            58999999944  245556543  567999999999999999999887653 37899999988432110   001133  


Q ss_pred             ---EEEEcCCCCCCCC-CCCHHHHHHHHhhcCCcEE
Q 027945          120 ---TVVMNPPFGTRKK-GVDMDFLSMALKVASQAVY  151 (216)
Q Consensus       120 ---~v~~npp~~~~~~-~~~~~~l~~~~~~~~~~~~  151 (216)
                         .+++....+...+ ......+......+.++-|
T Consensus       150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~  185 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY  185 (267)
T ss_dssp             S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred             CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence               6667767766655 3445677777777664333

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.03  E-value=0.028  Score=49.27  Aligned_cols=106  Identities=18%  Similarity=0.267  Sum_probs=70.8

Q ss_pred             cCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH---c--CCCeEEEEeCCHHHHHHH
Q 027945           13 LEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL---L--GADQVIAIDIDSDSLELA   87 (216)
Q Consensus        13 ~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~---~--~~~~v~~~D~~~~~~~~a   87 (216)
                      .+.|.++.+++.+|.  +.+.+.+++.+-.. ......+|.-+|+|-|-+.-...+   .  -.-+++++|-+|.++-..
T Consensus       335 YetFEkD~VKY~~Yq--~Ai~~AL~Drvpd~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL  411 (649)
T KOG0822|consen  335 YETFEKDPVKYDQYQ--QAILKALLDRVPDE-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL  411 (649)
T ss_pred             hhhhhccchHHHHHH--HHHHHHHHhhCccc-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence            456788888888765  34555555444222 111145788999999976543332   1  123899999999998766


Q ss_pred             HH-HHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           88 SE-NAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        88 ~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      +. |.+.++-+++++..|...+..+...   .|++++.
T Consensus       412 ~~~n~~~W~~~Vtii~~DMR~w~ap~eq---~DI~VSE  446 (649)
T KOG0822|consen  412 QNRNFECWDNRVTIISSDMRKWNAPREQ---ADIIVSE  446 (649)
T ss_pred             hhhchhhhcCeeEEEeccccccCCchhh---ccchHHH
Confidence            44 4455555899999999998865334   9999863

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=94.74  E-value=0.054  Score=37.52  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             cccEEEEcCCCCCCCC------------CCCHHHHHHHHhhcCC
Q 027945          117 HVDTVVMNPPFGTRKK------------GVDMDFLSMALKVASQ  148 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~------------~~~~~~l~~~~~~~~~  148 (216)
                      +||+|+.||||.....            ..+..++..+++.+.+
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll~G   45 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLLNG   45 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHhCC
Confidence            5999999999987631            1233577888777743

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.72  E-value=0.18  Score=41.25  Aligned_cols=49  Identities=31%  Similarity=0.394  Sum_probs=43.5

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      ....+..|||+.+|+|..++...+.+. ..+|+|+++..++.+..++...
T Consensus       219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence            445788999999999999999998765 8999999999999999998764

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=94.58  E-value=1.2  Score=34.78  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcc----hHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCG----TLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G----~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      .++.+..+..   ....+.+++.+|+-|    .+++..|.+ -.++++++-.++..+...++.+...+.  .++|+.++.
T Consensus        29 ~aEfISAlAA---G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   29 VAEFISALAA---GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             HHHHHHHHhc---cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            3444444443   235567888866543    234444433 355899999999988888888887776  369999985


Q ss_pred             c-cccccccCCCcccEEEEcCC
Q 027945          106 R-NLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       106 ~-~~~~~~~~~~~fD~v~~npp  126 (216)
                      . +.......   .|+++.|.=
T Consensus       106 ~e~~~~~~~~---iDF~vVDc~  124 (218)
T PF07279_consen  106 PEEVMPGLKG---IDFVVVDCK  124 (218)
T ss_pred             HHHHHhhccC---CCEEEEeCC
Confidence            4 34444434   999998753

The function of this family is unknown.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.52  E-value=0.15  Score=42.78  Aligned_cols=119  Identities=11%  Similarity=0.034  Sum_probs=66.1

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-C----eEEEEccccccc
Q 027945           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-D----IDFVQCDIRNLE  109 (216)
Q Consensus        37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~----~~~~~~d~~~~~  109 (216)
                      |..+...-......++||+|.|.|.-..++-.. + ...++.+|.++..-+........... .    ..-+..|-..++
T Consensus       102 L~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp  181 (484)
T COG5459         102 LDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP  181 (484)
T ss_pred             HHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence            333333334566778999999999877776654 2 45788999998665555444443322 1    222333333333


Q ss_pred             ccccCCCcccEEEE-cCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945          110 WRVCSVGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR  159 (216)
Q Consensus       110 ~~~~~~~~fD~v~~-npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  159 (216)
                      ..+ .   +++++. |--.+.......-..++.+..... |..+++|-+++.
T Consensus       182 ~ad-~---ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         182 AAD-L---YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             ccc-e---eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            333 3   676664 222111111111125666666543 677888888774

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=94.36  E-value=0.096  Score=41.97  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=28.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELAS   88 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~   88 (216)
                      ...+++|++||+|.++..+.+. ...|+.-|+++..+...+
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK   59 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred             CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence            6789999999999999999874 448999999987665444

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.34  E-value=0.032  Score=45.18  Aligned_cols=38  Identities=34%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHH
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL   84 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~   84 (216)
                      ..+++|||+|||+|..++.+...+...+...|.+...+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            57899999999999999999988867899999988776

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.30  E-value=0.35  Score=34.50  Aligned_cols=65  Identities=26%  Similarity=0.385  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEE-c
Q 027945           48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVM-N  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~-n  124 (216)
                      +..+++|+|.|.=. .+..+.++|. .|+++|+++.       ++. .  .+.++..|+++..... ..   .|+|++ +
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~--g~~~v~DDif~P~l~iY~~---a~lIYSiR   78 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E--GVNFVVDDIFNPNLEIYEG---ADLIYSIR   78 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------STTEE---SSS--HHHHTT---EEEEEEES
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c--CcceeeecccCCCHHHhcC---CcEEEEeC
Confidence            34599999999765 5777777786 9999999986       222 1  4788999999855442 23   899995 7


Q ss_pred             CC
Q 027945          125 PP  126 (216)
Q Consensus       125 pp  126 (216)
                      ||
T Consensus        79 PP   80 (127)
T PF03686_consen   79 PP   80 (127)
T ss_dssp             --
T ss_pred             CC
Confidence            77

; PDB: 2K4M_A.

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.24  E-value=0.13  Score=43.42  Aligned_cols=85  Identities=12%  Similarity=0.094  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .+.++.+|+|++|-.|.-+..++..  ...++++.|.+....+..+..+...|+ .++...+|+...+... .......|
T Consensus       210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~-~~~~v~~i  288 (413)
T KOG2360|consen  210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPE-KFRDVTYI  288 (413)
T ss_pred             CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcc-cccceeEE
Confidence            4567789999999999988777753  466999999999999999999999988 5677799988852221 22237799


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++||+....
T Consensus       289 L~DpscSgS  297 (413)
T KOG2360|consen  289 LVDPSCSGS  297 (413)
T ss_pred             EeCCCCCCC
Confidence            999998765

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=94.03  E-value=0.18  Score=42.59  Aligned_cols=42  Identities=29%  Similarity=0.216  Sum_probs=34.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~   89 (216)
                      +-..++|+|+|.|.++..++-...-.|+++|-|....+.|+.
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            336899999999999999996555599999999777766654

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=93.99  E-value=0.21  Score=39.67  Aligned_cols=77  Identities=19%  Similarity=0.175  Sum_probs=51.8

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHH----HHHHHHHHHhcCCCeEEEEcccccccccccCCCcc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDS----LELASENAADLELDIDFVQCDIRNLEWRVCSVGHV  118 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~----~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~f  118 (216)
                      -..++.+||=+|+++|...-.++..  +..-|+++|.++.+    +.+|+++     .++-.+.-|+.......-.-+-.
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArhP~KYRmlVgmV  227 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARHPAKYRMLVGMV  227 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCCchheeeeeeeE
Confidence            3468899999999999876666653  34579999988654    3333333     26788888987643322111238


Q ss_pred             cEEEEcCC
Q 027945          119 DTVVMNPP  126 (216)
Q Consensus       119 D~v~~npp  126 (216)
                      |+||+|-+
T Consensus       228 DvIFaDva  235 (317)
T KOG1596|consen  228 DVIFADVA  235 (317)
T ss_pred             EEEeccCC
Confidence            99998866

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.91  E-value=0.76  Score=39.36  Aligned_cols=86  Identities=19%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CEEEEecCCc-chH-HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc---ccCCCcccEEEE-
Q 027945           50 KVVADFGCGC-GTL-GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR---VCSVGHVDTVVM-  123 (216)
Q Consensus        50 ~~vLD~g~G~-G~~-~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~fD~v~~-  123 (216)
                      ++||-+|||. |.. ...+++++..+|+..|.++...+.+......   +++..+.|+.+...-   ...   +|+|+. 
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~---~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALIKD---FDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHHhc---CCEEEEe
Confidence            4689999952 322 3334555657999999998888887776433   688888888875322   123   799995 


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      -|||...      ..++.+.+.+-
T Consensus        76 ~p~~~~~------~i~ka~i~~gv   93 (389)
T COG1748          76 APPFVDL------TILKACIKTGV   93 (389)
T ss_pred             CCchhhH------HHHHHHHHhCC
Confidence            5554433      44555554443

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=93.78  E-value=0.041  Score=44.62  Aligned_cols=89  Identities=20%  Similarity=0.188  Sum_probs=64.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe-EEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ..+..++|.|||.|-....-   +...++|+|+....+..++..      +. ....+|+...+....+   ||.+++--
T Consensus        44 ~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~------~~~~~~~ad~l~~p~~~~s---~d~~lsia  111 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS------GGDNVCRADALKLPFREES---FDAALSIA  111 (293)
T ss_pred             CCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC------CCceeehhhhhcCCCCCCc---cccchhhh
Confidence            34779999999999654322   444799999998777777655      23 6889999998887766   99999877


Q ss_pred             CCCCC-CCCCCHHHHHHHHhhcC
Q 027945          126 PFGTR-KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~-~~~~~~~~l~~~~~~~~  147 (216)
                      .-|+. ........+++..+..+
T Consensus       112 vihhlsT~~RR~~~l~e~~r~lr  134 (293)
T KOG1331|consen  112 VIHHLSTRERRERALEELLRVLR  134 (293)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhc
Confidence            76666 33445566777776654

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.61  E-value=0.45  Score=39.00  Aligned_cols=80  Identities=26%  Similarity=0.341  Sum_probs=61.1

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ...++.||--|.|+|.   ++.++|++|+ +++..|++++..+...+.++.+| ++..+..|+.+...-.       ..-
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            4578899999999994   6888888887 99999999999888888888766 6778888877632211       122


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      |..|++|.|-.-
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            569999987544

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.57  E-value=0.2  Score=41.56  Aligned_cols=44  Identities=30%  Similarity=0.392  Sum_probs=38.4

Q ss_pred             CCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           46 DVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        46 ~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...+.+||-+|+| .|..+...|+. |+.+|+.+|+++..++.|++
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            3578899999999 57777777764 88999999999999999998

>PTZ00357 methyltransferase; Provisional

Probab=92.92  E-value=0.33  Score=44.30  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=48.1

Q ss_pred             CEEEEecCCcchHHHHHH---H-cC-CCeEEEEeCCHHHHHHHHHHH---Hhc-------CCCeEEEEcccccccccc--
Q 027945           50 KVVADFGCGCGTLGAAAT---L-LG-ADQVIAIDIDSDSLELASENA---ADL-------ELDIDFVQCDIRNLEWRV--  112 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~---~-~~-~~~v~~~D~~~~~~~~a~~~~---~~~-------~~~~~~~~~d~~~~~~~~--  112 (216)
                      ..|+-+|+|-|-+.-...   + .+ .-+++++|-|+.++.....+.   ..+       |-.++++..|..++....  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            368999999997643332   2 23 238999999977655544443   233       114899999999875331  


Q ss_pred             ------cCCCcccEEEE
Q 027945          113 ------CSVGHVDTVVM  123 (216)
Q Consensus       113 ------~~~~~fD~v~~  123 (216)
                            ...+++|+||+
T Consensus       782 ~s~~~P~~~gKaDIVVS  798 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS  798 (1072)
T ss_pred             ccccccccccccceehH
Confidence                  01146999997

>PRK05867 short chain dehydrogenase; Provisional

Probab=92.16  E-value=2.9  Score=33.09  Aligned_cols=81  Identities=22%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....++..+.++.++.+|+.+...-.       ...+
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            357889999986653   3444555565 8999999988877776666554446778888887632110       0113


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.++.|....
T Consensus        86 ~id~lv~~ag~~   97 (253)
T PRK05867         86 GIDIAVCNAGII   97 (253)
T ss_pred             CCCEEEECCCCC
Confidence            599999887654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.37  E-value=2.3  Score=29.31  Aligned_cols=64  Identities=23%  Similarity=0.349  Sum_probs=42.3

Q ss_pred             CCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCC
Q 027945           57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPP  126 (216)
Q Consensus        57 ~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp  126 (216)
                      ||.|.++..+++.   +..+|+.+|.+++.++.++..      .+.++.+|..+...-. ..-.+.|.+++.-+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence            6777787777753   344899999999998887766      3688999998743211 11123888887433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.22  E-value=1.7  Score=36.48  Aligned_cols=47  Identities=34%  Similarity=0.420  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEecCC-cchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAA   92 (216)
Q Consensus        45 ~~~~~~~vLD~g~G-~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~   92 (216)
                      ...++++|+-.|+| .|.+++.+++ .+ ++|+++|.+++-.+.|++.-.
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA  211 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA  211 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC
Confidence            45678899999988 4467888887 46 699999999999999988743

>PRK13699 putative methylase; Provisional

Probab=90.90  E-value=0.13  Score=40.70  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=22.4

Q ss_pred             eEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      .+++++|+.+..... .++++|+|+.||||.
T Consensus         2 ~~l~~gD~le~l~~l-pd~SVDLIiTDPPY~   31 (227)
T PRK13699          2 SRFILGNCIDVMARF-PDNAVDFILTDPPYL   31 (227)
T ss_pred             CeEEechHHHHHHhC-CccccceEEeCCCcc
Confidence            367899998864433 233499999999996

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=90.79  E-value=3.6  Score=30.03  Aligned_cols=95  Identities=21%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             EEEEecCCcch---HHHHHHHcCCCeEEEEeCC--HHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945           51 VVADFGCGCGT---LGAAATLLGADQVIAIDID--SDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV  118 (216)
Q Consensus        51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f  118 (216)
                      ++|=.|+++|.   ++..+++.|...|+.+..+  ....+.....++..+.++.+++.|+.+...-.       ...++.
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~l   81 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPL   81 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            56777766552   3445555566688999988  56666666666655667899999976632110       122349


Q ss_pred             cEEEEcCCCCCCCC--CCCHHHHHHHHhh
Q 027945          119 DTVVMNPPFGTRKK--GVDMDFLSMALKV  145 (216)
Q Consensus       119 D~v~~npp~~~~~~--~~~~~~l~~~~~~  145 (216)
                      |.++.+........  ....+.+.+.+..
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~  110 (167)
T PF00106_consen   82 DILINNAGIFSDGSLDDLSEEELERVFRV  110 (167)
T ss_dssp             SEEEEECSCTTSBSGGGSHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhhhcccc
Confidence            99998877655422  2233455555543

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=90.75  E-value=0.42  Score=36.60  Aligned_cols=84  Identities=17%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             HHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEc-ccccccc
Q 027945           35 RMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQC-DIRNLEW  110 (216)
Q Consensus        35 ~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-d~~~~~~  110 (216)
                      ..|.++...+.. .++.+|||+||..|.-+....++  +.+.|.|+|+..-        ..-.  .++++++ |+.+...
T Consensus        55 FKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~--Ga~~i~~~dvtdp~~  124 (232)
T KOG4589|consen   55 FKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPE--GATIIQGNDVTDPET  124 (232)
T ss_pred             hhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCC--CcccccccccCCHHH
Confidence            344444444443 46789999999999998888765  4668999998531        0111  3455555 5544211


Q ss_pred             cc-----cCCCcccEEEEcCCCC
Q 027945          111 RV-----CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       111 ~~-----~~~~~fD~v~~npp~~  128 (216)
                      ..     -..-+.|+|++|..=+
T Consensus       125 ~~ki~e~lp~r~VdvVlSDMapn  147 (232)
T KOG4589|consen  125 YRKIFEALPNRPVDVVLSDMAPN  147 (232)
T ss_pred             HHHHHHhCCCCcccEEEeccCCC
Confidence            10     0112499999986533

>PRK06139 short chain dehydrogenase; Provisional

Probab=90.62  E-value=4.7  Score=33.71  Aligned_cols=81  Identities=22%  Similarity=0.277  Sum_probs=54.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|+++|.   +...+++.|. +|+.++.++..++.....++..+.++.++..|+.+...-.       ...+
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            456788888876542   3444555565 8999999998888777777666666777888886532110       0114


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|..+.
T Consensus        84 ~iD~lVnnAG~~   95 (330)
T PRK06139         84 RIDVWVNNVGVG   95 (330)
T ss_pred             CCCEEEECCCcC
Confidence            589999887543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.03  E-value=3.5  Score=29.64  Aligned_cols=77  Identities=26%  Similarity=0.415  Sum_probs=47.9

Q ss_pred             CCCCCCEEEEecCCcch--HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~--~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...+++++|=+|+|--+  ....++..|+.+++.+.-+.+..+.....+.  +..++++..+  +.......   +|+|+
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--~~~~~~~~~~--~~~~~~~~---~DivI   80 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--GVNIEAIPLE--DLEEALQE---ADIVI   80 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--GCSEEEEEGG--GHCHHHHT---ESEEE
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--ccccceeeHH--HHHHHHhh---CCeEE
Confidence            45688999999997433  3444556688889999998776655555542  2235554443  33322224   99999


Q ss_pred             EcCCCC
Q 027945          123 MNPPFG  128 (216)
Q Consensus       123 ~npp~~  128 (216)
                      .-.|-.
T Consensus        81 ~aT~~~   86 (135)
T PF01488_consen   81 NATPSG   86 (135)
T ss_dssp             E-SSTT
T ss_pred             EecCCC
Confidence            876643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=89.98  E-value=6.7  Score=31.61  Aligned_cols=129  Identities=17%  Similarity=0.191  Sum_probs=72.1

Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHH----HcC-CCeEEEEeCCHHHHHHHHHHH-Hhc-C
Q 027945           24 EQYPTGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAAT----LLG-ADQVIAIDIDSDSLELASENA-ADL-E   95 (216)
Q Consensus        24 ~~~~t~~~~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~----~~~-~~~v~~~D~~~~~~~~a~~~~-~~~-~   95 (216)
                      +.|||-.+  +.+++....++.. ..+.+++|+|+|+-.-+..+.    .++ ....+.+|++...++.....+ ... +
T Consensus        55 EYYpTRtE--aaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~  132 (321)
T COG4301          55 EYYPTRTE--AAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG  132 (321)
T ss_pred             cccCchhH--HHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC
Confidence            45666532  3344443333222 346799999999986555444    334 458999999998876654433 333 3


Q ss_pred             CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEe
Q 027945           96 LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH  154 (216)
Q Consensus        96 ~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~  154 (216)
                      +.+.-+.+|...........+.==+++.....+...++.-..|+..+-....++=|++.
T Consensus       133 l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         133 LEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             CeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            36777888876644332111112233333344444555556677777666654444443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.88  E-value=1.1  Score=37.85  Aligned_cols=45  Identities=38%  Similarity=0.489  Sum_probs=37.2

Q ss_pred             CCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHH
Q 027945           47 VSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASENA   91 (216)
Q Consensus        47 ~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~   91 (216)
                      .++.+|+-+||| .|.+++.+++. |+.+|+++|.++..++.|++..
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence            344499999999 57777777764 7889999999999999998854

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=89.33  E-value=9.9  Score=31.19  Aligned_cols=83  Identities=19%  Similarity=0.274  Sum_probs=44.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH---HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~---~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..++++|-+|+| |.   ....+++.|..+|+.++.++   +..+...+.+...+..+.+...|+.+...-...-.+.|+
T Consensus       124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            467789999997 53   22334456777799999986   333333333322221333444555432110000012799


Q ss_pred             EEEcCCCCCC
Q 027945          121 VVMNPPFGTR  130 (216)
Q Consensus       121 v~~npp~~~~  130 (216)
                      ||.+-|-+..
T Consensus       203 lINaTp~Gm~  212 (289)
T PRK12548        203 LVNATLVGMK  212 (289)
T ss_pred             EEEeCCCCCC
Confidence            9987776543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=89.32  E-value=1.2  Score=32.63  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             EecCCcc--hHHHHHH--Hc-CCCeEEEEeCCHHHHHHHHHH--HHhcCC--CeEEEEccc
Q 027945           54 DFGCGCG--TLGAAAT--LL-GADQVIAIDIDSDSLELASEN--AADLEL--DIDFVQCDI  105 (216)
Q Consensus        54 D~g~G~G--~~~~~l~--~~-~~~~v~~~D~~~~~~~~a~~~--~~~~~~--~~~~~~~d~  105 (216)
                      |+|+..|  .....+.  .. ...+|+++|.+|..++..+.+  +..++.  .+++.....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  6655553  22 356899999999999999999  655533  355555444

; PDB: 2PY6_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.24  E-value=0.2  Score=43.65  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             CCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc----cCCCcccEEE
Q 027945           49 NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV----CSVGHVDTVV  122 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~----~~~~~fD~v~  122 (216)
                      +.++|-+|-|.|.+...+.. .+...+++++++|.+++.|+.+...... +..++..|..++....    ..+..||+++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~  375 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM  375 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence            45789999999999888774 4667999999999999999988754432 3455666655543221    1223599999


Q ss_pred             Ec
Q 027945          123 MN  124 (216)
Q Consensus       123 ~n  124 (216)
                      .|
T Consensus       376 ~d  377 (482)
T KOG2352|consen  376 VD  377 (482)
T ss_pred             EE
Confidence            74

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=89.13  E-value=0.78  Score=37.01  Aligned_cols=92  Identities=16%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhhc--CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc---------------
Q 027945           32 IASRMLYTAENSF--GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL---------------   94 (216)
Q Consensus        32 ~~~~~l~~~~~~~--~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~---------------   94 (216)
                      +....|..+...+  ...++.++||+|||.-......+..-+.+++..|..+...+..++.++..               
T Consensus        38 ~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~l  117 (256)
T PF01234_consen   38 ILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCEL  117 (256)
T ss_dssp             HHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhc
Confidence            4444444443333  24567799999999976655555445779999999998887766655432               


Q ss_pred             -CC-------------Ce-EEEEccccccccccc---CCCcccEEEE
Q 027945           95 -EL-------------DI-DFVQCDIRNLEWRVC---SVGHVDTVVM  123 (216)
Q Consensus        95 -~~-------------~~-~~~~~d~~~~~~~~~---~~~~fD~v~~  123 (216)
                       |.             .+ +++.+|+....+-..   ...+||.|++
T Consensus       118 Eg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s  164 (256)
T PF01234_consen  118 EGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVIS  164 (256)
T ss_dssp             TTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEE
T ss_pred             cCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhh
Confidence             10             13 477888887543321   1124999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]

Probab=88.95  E-value=0.56  Score=43.26  Aligned_cols=44  Identities=18%  Similarity=0.235  Sum_probs=37.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~   92 (216)
                      .+.+++|+.+|-|.+.+..++.|+ .|+++|++|.++-..+..+.
T Consensus        90 ~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlE  133 (875)
T COG1743          90 EGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLE  133 (875)
T ss_pred             cCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHHh
Confidence            456899999999999999999986 99999999998766555443

>PRK08303 short chain dehydrogenase; Provisional

Probab=88.83  E-value=3.9  Score=33.74  Aligned_cols=78  Identities=21%  Similarity=0.118  Sum_probs=48.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH----------HHHHHHHHHHHhcCCCeEEEEcccccccccc-
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS----------DSLELASENAADLELDIDFVQCDIRNLEWRV-  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~----------~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-  112 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+.          +.++.+...+...+.++.++++|+.+...-. 
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence            467899999987663   3444555565 899888762          3444444444444445677888887632111 


Q ss_pred             ------cCCCcccEEEEcC
Q 027945          113 ------CSVGHVDTVVMNP  125 (216)
Q Consensus       113 ------~~~~~fD~v~~np  125 (216)
                            ...++.|.+|.|.
T Consensus        85 ~~~~~~~~~g~iDilVnnA  103 (305)
T PRK08303         85 LVERIDREQGRLDILVNDI  103 (305)
T ss_pred             HHHHHHHHcCCccEEEECC
Confidence                  1224589999887

>PRK08589 short chain dehydrogenase; Validated

Probab=88.30  E-value=5.7  Score=31.89  Aligned_cols=80  Identities=23%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.+ ...+.....+...+.++.++.+|+.+...-.       ...+
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            356788888876653   3444555565 89999998 4444444444444446778888887632110       1123


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.+|.|..+.
T Consensus        82 ~id~li~~Ag~~   93 (272)
T PRK08589         82 RVDVLFNNAGVD   93 (272)
T ss_pred             CcCEEEECCCCC
Confidence            589999987654

>PRK05854 short chain dehydrogenase; Provisional

Probab=87.89  E-value=6.2  Score=32.56  Aligned_cols=80  Identities=18%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..+++++-.|+++|.   ++..+++.|. +|+.+..++...+.+...+...  +.++.++.+|+.+...-.       ..
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            467789988887663   3444555565 8999999887766665555432  226788889987633111       12


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .++.|++|.|...
T Consensus        91 ~~~iD~li~nAG~  103 (313)
T PRK05854         91 GRPIHLLINNAGV  103 (313)
T ss_pred             CCCccEEEECCcc
Confidence            2458999987654

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=87.49  E-value=1.9  Score=35.43  Aligned_cols=45  Identities=13%  Similarity=0.191  Sum_probs=35.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD   93 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~   93 (216)
                      .+.+|+-+|+|-..+.-.+++. ++++.++|+|+..+...+..+..
T Consensus        63 ~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          63 IGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             CCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHH
Confidence            5679999999977777777774 55999999999988877766654

>PRK08339 short chain dehydrogenase; Provisional

Probab=87.40  E-value=5.3  Score=31.95  Aligned_cols=80  Identities=19%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+... +.++.++.+|+.+...-.      ...+
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            357788988887663   4455556666 8999999988777666555432 346788888887632111      1123


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|.++.|.-.
T Consensus        85 ~iD~lv~nag~   95 (263)
T PRK08339         85 EPDIFFFSTGG   95 (263)
T ss_pred             CCcEEEECCCC
Confidence            58999987643

>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase

Probab=87.24  E-value=4.8  Score=30.24  Aligned_cols=42  Identities=14%  Similarity=0.171  Sum_probs=25.9

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhh---cC-CcEEEEecCccHHHHHHHH
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKV---AS-QAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~~~~~  166 (216)
                      .|++||||...     ..+++++.+.   .+ ..|+++-......++.+.+
T Consensus        64 ~vf~NPPYS~~-----~~~v~kaae~~~~~g~~~VmLlpa~tst~W~~~~a  109 (166)
T TIGR01712        64 AVWLNPPYSRP-----DIFVNKTAWFTEARQAAEVILIEADLSTVWWPEDI  109 (166)
T ss_pred             eEEecCCCCcH-----HHHHHHHHHHHHhhCCeEEEEEecCCcchhHHhcC
Confidence            79999999754     6788877553   22 2444444444456654444

This is a model for a phage-borne DNA N-6-adenine-methyltransferase.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.01  E-value=8.2  Score=30.18  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCCC
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~  116 (216)
                      +++++|-.|++ |.++..++    +.|. +|+.++.++..++.+...++..+.++.+++.|+.+....       ....+
T Consensus         4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          4 KDKVIVITGGA-QGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56789988864 44444444    4455 899999998776666655555444677888887653211       00113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      ++|.||.+...
T Consensus        82 ~id~vi~~ag~   92 (253)
T PRK08217         82 QLNGLINNAGI   92 (253)
T ss_pred             CCCEEEECCCc
Confidence            48999987654

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=86.95  E-value=11  Score=29.25  Aligned_cols=106  Identities=17%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHH----HHHHHHHHH--hcCC-CeEEEEcccccccccccCC
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDS----LELASENAA--DLEL-DIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~----~~~a~~~~~--~~~~-~~~~~~~d~~~~~~~~~~~  115 (216)
                      ...++.+|+|+-.|.|.++..++.. + ...|+++-.++..    .+..+.+..  .... +++.+-.+...+...+ . 
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq-~-  122 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQ-K-  122 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCC-c-
Confidence            4568899999999999999988864 2 4477777654321    111111111  1111 4555555555554333 3 


Q ss_pred             CcccEEEEcCCCCCC-----CCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945          116 GHVDTVVMNPPFGTR-----KKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       116 ~~fD~v~~npp~~~~-----~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                        .|++..+--||..     .......+-....+.++ +++|++.
T Consensus       123 --~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         123 --LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             --ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence              6777776666554     22334456666677665 6777663

>PRK05876 short chain dehydrogenase; Provisional

Probab=86.88  E-value=5.3  Score=32.25  Aligned_cols=81  Identities=27%  Similarity=0.322  Sum_probs=52.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|+++|.   +...+++.|. +|+.++.++..++.+...+...+.++.++.+|+.+...-.       ...+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            356788888876553   3344445565 8999999987777666555554556778888987632110       1123


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus        83 ~id~li~nAg~~   94 (275)
T PRK05876         83 HVDVVFSNAGIV   94 (275)
T ss_pred             CCCEEEECCCcC
Confidence            489999887653

>PRK08862 short chain dehydrogenase; Provisional

Probab=86.78  E-value=5.4  Score=31.27  Aligned_cols=78  Identities=19%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC-
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG-  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~-  116 (216)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+...+.++..+..|+.+...-.       ..-+ 
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            56789999998875   4555666666 8999999988887776666555545666777765532110       1113 


Q ss_pred             cccEEEEcCC
Q 027945          117 HVDTVVMNPP  126 (216)
Q Consensus       117 ~fD~v~~npp  126 (216)
                      +.|+++.|..
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            5999998863

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=86.62  E-value=3.8  Score=37.76  Aligned_cols=97  Identities=14%  Similarity=0.072  Sum_probs=54.8

Q ss_pred             CCEEEEecCCcchHHHHHHH-c-------C-----CCeEEEEeCCHHHHHH--------------HHHHHHh-----cCC
Q 027945           49 NKVVADFGCGCGTLGAAATL-L-------G-----ADQVIAIDIDSDSLEL--------------ASENAAD-----LEL   96 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~-~-------~-----~~~v~~~D~~~~~~~~--------------a~~~~~~-----~~~   96 (216)
                      .-+|+|+|-|+|...+...+ .       .     .-+++++|..|-..+.              ++..++.     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            36999999999985544442 1       1     2388999976522211              1122211     121


Q ss_pred             ----------CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945           97 ----------DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV-DMDFLSMALKVAS  147 (216)
Q Consensus        97 ----------~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~-~~~~l~~~~~~~~  147 (216)
                                .++++.+|+.+......  .++|+++.|+.--..++.+ ..++++.+.+...
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~  197 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAPAKNPDMWSPNLFNALARLAR  197 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCCccChhhccHHHHHHHHHHhC
Confidence                      45678899987655431  2399999996322222222 3356666666654

>PRK07062 short chain dehydrogenase; Provisional

Probab=86.59  E-value=6.9  Score=31.08  Aligned_cols=80  Identities=20%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+...  +.++.++..|+.+...-.       ..
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR   84 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            467789999976653   3444555566 8999999987777665555432  225677888887643210       12


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .++.|.++.|...
T Consensus        85 ~g~id~li~~Ag~   97 (265)
T PRK07062         85 FGGVDMLVNNAGQ   97 (265)
T ss_pred             cCCCCEEEECCCC
Confidence            2458999987654

>PRK07791 short chain dehydrogenase; Provisional

Probab=86.57  E-value=16  Score=29.66  Aligned_cols=81  Identities=22%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH---------HHHHHHHHHHHhcCCCeEEEEccccccccc---
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---------DSLELASENAADLELDIDFVQCDIRNLEWR---  111 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~---------~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---  111 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.+.         ..++.+...+...+.++.++..|+.+...-   
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence            356789999987763   3444555565 888888764         445544444444444677788888663211   


Q ss_pred             ----ccCCCcccEEEEcCCCC
Q 027945          112 ----VCSVGHVDTVVMNPPFG  128 (216)
Q Consensus       112 ----~~~~~~fD~v~~npp~~  128 (216)
                          ....++.|.+|.|....
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~  103 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGIL  103 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCC
Confidence                01224589999887653

>PRK06720 hypothetical protein; Provisional

Probab=86.52  E-value=9.4  Score=28.60  Aligned_cols=81  Identities=25%  Similarity=0.273  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-------ccCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-------VCSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~~~  117 (216)
                      +++++|-.|.+.|.   +...+++.|. +|+.+|.+....+.+...+...+.++.++..|+.+...-       ....+.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56788888887653   3444555564 899999988776655555544344566778887653211       112245


Q ss_pred             ccEEEEcCCCCC
Q 027945          118 VDTVVMNPPFGT  129 (216)
Q Consensus       118 fD~v~~npp~~~  129 (216)
                      .|.++.|.....
T Consensus        94 iDilVnnAG~~~  105 (169)
T PRK06720         94 IDMLFQNAGLYK  105 (169)
T ss_pred             CCEEEECCCcCC
Confidence            899998866433

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=86.48  E-value=8  Score=30.50  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=50.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....++..+.++.++..|+.+...-.       ...+
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            356788888865442   2333444455 8999999887776666555544445677788876532110       1123


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      ++|.++.+...
T Consensus        86 ~id~vi~~ag~   96 (254)
T PRK08085         86 PIDVLINNAGI   96 (254)
T ss_pred             CCCEEEECCCc
Confidence            48999988764

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=86.38  E-value=0.48  Score=38.16  Aligned_cols=48  Identities=19%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             EEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945          100 FVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVY  151 (216)
Q Consensus       100 ~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~  151 (216)
                      +.+-|+.++.... .   +|++..||||+.+..+..-..|..+.+..++...
T Consensus       190 v~qeDaN~LikkI-~---~DilYLDpPYN~rqYs~nYhLLe~IA~y~kP~~~  237 (330)
T COG3392         190 VYQEDANELIKKI-S---GDILYLDPPYNARQYSANYHLLETIARYEKPEPK  237 (330)
T ss_pred             HHHhhHHHHHHhc-C---CCEEEeCCCccccccchHHHHHHHHHhcCCcccc
Confidence            3444554444443 3   8999999999999888877778877777654333

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=86.24  E-value=4.8  Score=36.73  Aligned_cols=63  Identities=16%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             CCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcC
Q 027945           57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNP  125 (216)
Q Consensus        57 ~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~np  125 (216)
                      ||.|.++..+++.   ...+++.+|.|++.++.+++.      ...++.+|+.+...-. ..-.+.|.+++--
T Consensus       406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~~  472 (601)
T PRK03659        406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVITC  472 (601)
T ss_pred             ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence            6677777666642   233899999999999988653      3678999988743221 1112488888743

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=86.17  E-value=6.7  Score=30.93  Aligned_cols=80  Identities=21%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             CCCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++. .++..    +++.|. +|+.++.+++.++.....++..+.++.++.+|+.+...-.       ...
T Consensus         9 ~~~k~ilItGas~-~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (256)
T PRK06124          9 LAGQVALVTGSAR-GLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCCEEEEECCCc-hHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4678899888654 44444    444465 8999999987776666666555556788888887632110       111


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|.++.+....
T Consensus        87 ~~id~vi~~ag~~   99 (256)
T PRK06124         87 GRLDILVNNVGAR   99 (256)
T ss_pred             CCCCEEEECCCCC
Confidence            3489999876653

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=86.09  E-value=1.2  Score=37.96  Aligned_cols=93  Identities=14%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-------CC---CeEEEE
Q 027945           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-------EL---DIDFVQ  102 (216)
Q Consensus        34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-------~~---~~~~~~  102 (216)
                      ..-+.....++...++..-.|+|+|.|.....++.. ++..-+|+++....-+.|..+...+       |-   .++.++
T Consensus       178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~  257 (419)
T KOG3924|consen  178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIH  257 (419)
T ss_pred             HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecc
Confidence            333344444556667889999999999987777754 6778999998776666665554432       22   478888


Q ss_pred             cccccccccccCCCcccEEEEcCC
Q 027945          103 CDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      +++........-....++|++|-.
T Consensus       258 gsf~~~~~v~eI~~eatvi~vNN~  281 (419)
T KOG3924|consen  258 GSFLDPKRVTEIQTEATVIFVNNV  281 (419)
T ss_pred             cccCCHHHHHHHhhcceEEEEecc
Confidence            888764332210112788888654

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=85.96  E-value=2.7  Score=34.00  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=33.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC------CCeEEEEeCCH
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG------ADQVIAIDIDS   81 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~------~~~v~~~D~~~   81 (216)
                      .++..+...-...++..++|+|||.|.++..++..-      ...++.+|-..
T Consensus         5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen    5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            344444443223466799999999999999999742      34788999754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=85.92  E-value=9.8  Score=30.94  Aligned_cols=83  Identities=19%  Similarity=0.200  Sum_probs=60.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc--------
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV--------  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~--------  112 (216)
                      ..++++|--|.++|.   ....+++.|+ +|+.++.+++.++.....+...+.   ++..+.+|+.......        
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            477899999998884   5677778776 999999999988887777665544   4788899987542211        


Q ss_pred             cCCCcccEEEEcCCCCCC
Q 027945          113 CSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~~  130 (216)
                      ...++.|.++.|......
T Consensus        85 ~~~GkidiLvnnag~~~~  102 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGALGL  102 (270)
T ss_pred             HhCCCCCEEEEcCCcCCC
Confidence            124679999987766553

>PRK06172 short chain dehydrogenase; Provisional

Probab=85.75  E-value=7.2  Score=30.71  Aligned_cols=80  Identities=24%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...+...+.++.++.+|+.+...-.       ...++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            56789999875442   2333444455 8999999987776666666555556888889987632110       11134


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|.++.+..+.
T Consensus        85 id~li~~ag~~   95 (253)
T PRK06172         85 LDYAFNNAGIE   95 (253)
T ss_pred             CCEEEECCCCC
Confidence            89999877653

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.62  E-value=14  Score=28.19  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=56.7

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL   96 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~   96 (216)
                      .+|..+||=-.+..+..++...+..  ...+.+|.-+.|-+=.+-.....  .+..+|+..|.|..        ....| 
T Consensus        46 eDwQlsqfwy~~eta~~La~e~v~~--s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg-  114 (217)
T KOG3350|consen   46 EDWQLSQFWYSDETARKLAAERVEA--SGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKR--------FELYG-  114 (217)
T ss_pred             cchhhhhhhcCHHHHHHHHHHHHhh--cccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhh--------HHhcc-
Confidence            3455666555556666666666654  22345666666655442222222  24558999999863        33333 


Q ss_pred             CeEEEEccccccc-ccccCCCcccEEEEcCCCCCC
Q 027945           97 DIDFVQCDIRNLE-WRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        97 ~~~~~~~d~~~~~-~~~~~~~~fD~v~~npp~~~~  130 (216)
                       -+|+.=|..... .++.-.++||+|++||||-..
T Consensus       115 -~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~  148 (217)
T KOG3350|consen  115 -TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSE  148 (217)
T ss_pred             -ceeEEeccCCCCCCHHHHHhcccEEEeCCccccc
Confidence             356666654421 222122359999999999754

>PRK07035 short chain dehydrogenase; Provisional

Probab=85.60  E-value=7.3  Score=30.65  Aligned_cols=80  Identities=19%  Similarity=0.229  Sum_probs=51.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.....+...+.++.++..|+.+...-.       ...+
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            356788888877663   3444555565 9999999887777666666554445677788876532110       1113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|+++.+..+
T Consensus        85 ~id~li~~ag~   95 (252)
T PRK07035         85 RLDILVNNAAA   95 (252)
T ss_pred             CCCEEEECCCc
Confidence            48999977654

>PRK06125 short chain dehydrogenase; Provisional

Probab=85.45  E-value=9.8  Score=30.13  Aligned_cols=79  Identities=23%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc---cCCCcccE
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV---CSVGHVDT  120 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~---~~~~~fD~  120 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++...+.+...+... +.++.++..|+.+...-.   ...++.|.
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            56788988975542   2333445566 9999999887776665555432 335778888876532110   01234999


Q ss_pred             EEEcCCC
Q 027945          121 VVMNPPF  127 (216)
Q Consensus       121 v~~npp~  127 (216)
                      ++.+...
T Consensus        85 lv~~ag~   91 (259)
T PRK06125         85 LVNNAGA   91 (259)
T ss_pred             EEECCCC
Confidence            9987654

>PRK07063 short chain dehydrogenase; Provisional

Probab=85.43  E-value=7.8  Score=30.68  Aligned_cols=80  Identities=24%  Similarity=0.233  Sum_probs=51.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh--cCCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.....+..  .+.++.++.+|+.+...-.       ..
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            356789988876552   3344445565 899999998877777666654  2336778888887632111       11


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .+..|.++.|...
T Consensus        84 ~g~id~li~~ag~   96 (260)
T PRK07063         84 FGPLDVLVNNAGI   96 (260)
T ss_pred             hCCCcEEEECCCc
Confidence            1348999987654

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=85.33  E-value=0.8  Score=36.52  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             CCEEEEecCCcchHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           49 NKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      +.+||++.+|.|.+..++..  .++.-|-++|+++.+-+.-..|...+=+ .-.+.-..+.++..-  .   +|++.+.|
T Consensus         3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd~l--~---~~m~lMSP   77 (338)
T KOG0919|consen    3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFDKL--Q---ANMLLMSP   77 (338)
T ss_pred             ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhhhc--c---cceEeeCC
Confidence            45899999999998666654  4555788999999887776666322111 111222333333332  2   89999999


Q ss_pred             CCCCC
Q 027945          126 PFGTR  130 (216)
Q Consensus       126 p~~~~  130 (216)
                      |....
T Consensus        78 pCQPf   82 (338)
T KOG0919|consen   78 PCQPF   82 (338)
T ss_pred             CCCch
Confidence            98664

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=85.26  E-value=4  Score=34.41  Aligned_cols=75  Identities=24%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH---------------------HHHHHHHHHHHhcCC--CeEEEE
Q 027945           48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFVQ  102 (216)
Q Consensus        48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~~~~~~  102 (216)
                      ...+||-+||| .|. ++..|++.|..+++.+|.|.                     .-.+.+++.++..+.  +++.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            56789999998 344 45666677888999999874                     123445555554433  566666


Q ss_pred             cccccccccccCCCcccEEEE
Q 027945          103 CDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++....... --..+|+|+.
T Consensus       103 ~~~~~~~~~~-~~~~~DlVid  122 (338)
T PRK12475        103 TDVTVEELEE-LVKEVDLIID  122 (338)
T ss_pred             ccCCHHHHHH-HhcCCCEEEE
Confidence            6654211111 0113899885

>PRK09291 short chain dehydrogenase; Provisional

Probab=85.14  E-value=6.8  Score=30.83  Aligned_cols=77  Identities=22%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             CEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEc
Q 027945           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMN  124 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~n  124 (216)
                      +++|-.|++ |.++..++    +.|. +|++++.++...+.........+.++.++.+|+.+...-. ...++.|.|+.|
T Consensus         3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            468888875 44444444    4454 8999998877666555555544446788888987642111 111249999987


Q ss_pred             CCCC
Q 027945          125 PPFG  128 (216)
Q Consensus       125 pp~~  128 (216)
                      ..+.
T Consensus        81 ag~~   84 (257)
T PRK09291         81 AGIG   84 (257)
T ss_pred             CCcC
Confidence            5543

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.09  E-value=3.8  Score=35.09  Aligned_cols=47  Identities=13%  Similarity=0.047  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~   92 (216)
                      ...++.+||-|.+|-....-.+.. ++++|++||+||.-....+-.+.
T Consensus        32 ~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   32 NIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence            345777888887664444444444 67799999999987777665544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06194 hypothetical protein; Provisional

Probab=84.99  E-value=7.9  Score=31.17  Aligned_cols=80  Identities=21%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .++++|-.|++ |.++..    +++.|. +|+.+|.++..++.....+...+.++.++.+|+.+...-.       ...+
T Consensus         5 ~~k~vlVtGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          5 AGKVAVITGAA-SGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CCCEEEEeCCc-cHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45788877755 444444    444565 8999999877766665555444446788899987632110       1123


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|+|+.+.....
T Consensus        83 ~id~vi~~Ag~~~   95 (287)
T PRK06194         83 AVHLLFNNAGVGA   95 (287)
T ss_pred             CCCEEEECCCCCC
Confidence            4899998776543

>PRK07890 short chain dehydrogenase; Provisional

Probab=84.91  E-value=8.2  Score=30.40  Aligned_cols=79  Identities=28%  Similarity=0.271  Sum_probs=50.6

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...++++|. +|++++.++...+.+...+...+.++.++..|+.+...-.       ...++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            56788888865542   3344445566 8999999987776666665544446788888886532110       01134


Q ss_pred             ccEEEEcCCC
Q 027945          118 VDTVVMNPPF  127 (216)
Q Consensus       118 fD~v~~npp~  127 (216)
                      .|.|+.+...
T Consensus        83 ~d~vi~~ag~   92 (258)
T PRK07890         83 VDALVNNAFR   92 (258)
T ss_pred             ccEEEECCcc
Confidence            8999987644

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=84.89  E-value=8.2  Score=30.61  Aligned_cols=75  Identities=19%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             EEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcccE
Q 027945           51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVDT  120 (216)
Q Consensus        51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD~  120 (216)
                      ++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+...+ ++.++.+|+.+...-.       ...++.|+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            57777866552   3344445565 89999999887777666655433 5677888876532110       11235999


Q ss_pred             EEEcCCC
Q 027945          121 VVMNPPF  127 (216)
Q Consensus       121 v~~npp~  127 (216)
                      +|.|...
T Consensus        80 li~naG~   86 (259)
T PRK08340         80 LVWNAGN   86 (259)
T ss_pred             EEECCCC
Confidence            9987654

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.87  E-value=9.4  Score=26.88  Aligned_cols=66  Identities=26%  Similarity=0.341  Sum_probs=46.5

Q ss_pred             CCCEEEEecCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE-cC
Q 027945           48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM-NP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~-np  125 (216)
                      ...+|+|+|.|.=. .+..++++|+ .|+++|+++.       +..   ..++++..|+++.....  ....|+|++ -|
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~---~g~~~v~DDitnP~~~i--Y~~A~lIYSiRp   79 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP---EGLRFVVDDITNPNISI--YEGADLIYSIRP   79 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc---ccceEEEccCCCccHHH--hhCccceeecCC
Confidence            33489999988664 5677777786 8999999985       222   25789999998755432  123889986 44


Q ss_pred             C
Q 027945          126 P  126 (216)
Q Consensus       126 p  126 (216)
                      |
T Consensus        80 p   80 (129)
T COG1255          80 P   80 (129)
T ss_pred             C
Confidence            4

>PRK07677 short chain dehydrogenase; Provisional

Probab=84.84  E-value=7.4  Score=30.68  Aligned_cols=77  Identities=26%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945           49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV  118 (216)
Q Consensus        49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f  118 (216)
                      ++++|-.|++.|.   +...+++.|. +|++++.++...+.+...+...+.++.++.+|+.+...-.       ...++.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            3578888876652   3344445566 8999999887776666555444446778888876522110       011348


Q ss_pred             cEEEEcCC
Q 027945          119 DTVVMNPP  126 (216)
Q Consensus       119 D~v~~npp  126 (216)
                      |.++.+..
T Consensus        80 d~lI~~ag   87 (252)
T PRK07677         80 DALINNAA   87 (252)
T ss_pred             cEEEECCC
Confidence            99997753

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.74  E-value=20  Score=29.45  Aligned_cols=98  Identities=21%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..+++|+--||.+|.   ++..++++|. +++-+-.....++...+.++..+.  ++.++++|+.+...-.       ..
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            377899999999994   6777888776 677777666677666555544433  4888999988743221       23


Q ss_pred             CCcccEEEEcCCCCCC--CCCCCHHHHHHHHhh
Q 027945          115 VGHVDTVVMNPPFGTR--KKGVDMDFLSMALKV  145 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~--~~~~~~~~l~~~~~~  145 (216)
                      .+..|+.+.|--+...  .......-++..++.
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdt  121 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDT  121 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhh
Confidence            3569999999887663  223344455555443

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=84.41  E-value=8.8  Score=30.53  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...++..+.++.++.+|+.+...-.       ...+
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            366789999987653   3444555565 7999999888777777666655556788889987632110       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|.++.+..+..
T Consensus        87 ~id~li~~ag~~~   99 (265)
T PRK07097         87 VIDILVNNAGIIK   99 (265)
T ss_pred             CCCEEEECCCCCC
Confidence            4899998776543

>PRK07109 short chain dehydrogenase; Provisional

Probab=84.40  E-value=9  Score=32.01  Aligned_cols=80  Identities=23%  Similarity=0.219  Sum_probs=52.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....++..+.++.++.+|+.+...-.       ...+
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            456788888865542   2334445565 8999999988887777666655657788889987632111       1123


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|...
T Consensus        85 ~iD~lInnAg~   95 (334)
T PRK07109         85 PIDTWVNNAMV   95 (334)
T ss_pred             CCCEEEECCCc
Confidence            58999987654

>PRK05866 short chain dehydrogenase; Provisional

Probab=84.22  E-value=8.3  Score=31.49  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=50.3

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++.+++.++.....+...+.++.++.+|+.+...-.       ...+.
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45788888875542   2333444555 8999999988777666665544446778888887632110       01134


Q ss_pred             ccEEEEcCCC
Q 027945          118 VDTVVMNPPF  127 (216)
Q Consensus       118 fD~v~~npp~  127 (216)
                      .|+++.+...
T Consensus       118 id~li~~AG~  127 (293)
T PRK05866        118 VDILINNAGR  127 (293)
T ss_pred             CCEEEECCCC
Confidence            8999987654

>TIGR00571 dam DNA adenine methylase (dam)

Probab=84.18  E-value=4.4  Score=32.83  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           81 SDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      ...+......++    ++++.++|+.+.......   -|+|++||||.
T Consensus       143 ~~~i~~~~~~l~----~v~i~~~Df~~~i~~~~~---~dfvYlDPPY~  183 (266)
T TIGR00571       143 EKNLRHFAEKLQ----NTTFLCGSFEKILAMVDD---DSFVYCDPPYL  183 (266)
T ss_pred             HHHHHHHHHHhc----CCEEEECCHHHHHhhcCC---CCEEEECCCCC
Confidence            344444444443    578899999887643323   67999999995

All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.

>PRK06197 short chain dehydrogenase; Provisional

Probab=84.17  E-value=13  Score=30.44  Aligned_cols=79  Identities=19%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             CCCCEEEEecCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~  113 (216)
                      ..++++|-.|+. |.++..+    +++|. +|++++.++...+.+...+...  +.++.++.+|+.+...-.       .
T Consensus        14 ~~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         14 QSGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            466788888764 4444444    44565 8999998877666555544432  235788889987643111       1


Q ss_pred             CCCcccEEEEcCCC
Q 027945          114 SVGHVDTVVMNPPF  127 (216)
Q Consensus       114 ~~~~fD~v~~npp~  127 (216)
                      ..++.|.+|.|...
T Consensus        92 ~~~~iD~li~nAg~  105 (306)
T PRK06197         92 AYPRIDLLINNAGV  105 (306)
T ss_pred             hCCCCCEEEECCcc
Confidence            12358999987654

>PRK07904 short chain dehydrogenase; Provisional

Probab=83.98  E-value=6.7  Score=31.19  Aligned_cols=80  Identities=13%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHH-HHHHHHHHHhcCC-CeEEEEcccccccc-----cc-cCC
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-LELASENAADLEL-DIDFVQCDIRNLEW-----RV-CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~-~~~a~~~~~~~~~-~~~~~~~d~~~~~~-----~~-~~~  115 (216)
                      .++++|-.|++.| ++..++    +.|..+|+.++.++.. ++.+.+.+...+. ++.++.+|+.+...     .. ...
T Consensus         7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            4568898888554 444444    4454599999988764 5555444544443 67888888865321     10 011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      +..|+++.|....
T Consensus        86 g~id~li~~ag~~   98 (253)
T PRK07904         86 GDVDVAIVAFGLL   98 (253)
T ss_pred             CCCCEEEEeeecC
Confidence            3599999876553

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=83.84  E-value=8.6  Score=30.43  Aligned_cols=79  Identities=18%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+..  +.....++..+.++.++.+|+.+...-.       ...+
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            357889999977663   3444555566 8888876532  2233333434446778888887632111       1124


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.++.|....
T Consensus        83 ~iD~lv~~ag~~   94 (251)
T PRK12481         83 HIDILINNAGII   94 (251)
T ss_pred             CCCEEEECCCcC
Confidence            589999887653

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=83.79  E-value=5.3  Score=33.67  Aligned_cols=75  Identities=21%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH---------------------HHHHHHHHHHHhcCC--CeEEEE
Q 027945           48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS---------------------DSLELASENAADLEL--DIDFVQ  102 (216)
Q Consensus        48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~---------------------~~~~~a~~~~~~~~~--~~~~~~  102 (216)
                      ...+||-+||| .|. ++..|++.|..+++.+|-|.                     .-.+.++++++..+.  +++.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            55789999998 444 45666777888999999763                     123444555554333  566666


Q ss_pred             cccccccccccCCCcccEEEE
Q 027945          103 CDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++....... --..+|+|+.
T Consensus       103 ~~~~~~~~~~-~~~~~DlVid  122 (339)
T PRK07688        103 QDVTAEELEE-LVTGVDLIID  122 (339)
T ss_pred             ccCCHHHHHH-HHcCCCEEEE
Confidence            6654321111 0012899885

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=83.73  E-value=3.4  Score=36.86  Aligned_cols=43  Identities=28%  Similarity=0.251  Sum_probs=34.9

Q ss_pred             CCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           47 VSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        47 ~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      .++.+|+-+|||. |..++..++. |+ +|+++|.+++..+.++..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl  207 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM  207 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence            4688999999995 5566666754 66 899999999999988873

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=83.69  E-value=11  Score=29.66  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=48.1

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccc---------c
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR---------V  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---------~  112 (216)
                      .+++++|-.|+ +|.++..++    +.|. +|++++.++...+.....+...+. ++.++..|+......         .
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            46778998885 555555444    4455 999999998777666555554432 566777776422110         0


Q ss_pred             cCCCcccEEEEcCC
Q 027945          113 CSVGHVDTVVMNPP  126 (216)
Q Consensus       113 ~~~~~fD~v~~npp  126 (216)
                      ...++.|.|+.+..
T Consensus        88 ~~~~~id~vi~~Ag  101 (247)
T PRK08945         88 EQFGRLDGVLHNAG  101 (247)
T ss_pred             HHhCCCCEEEECCc
Confidence            01134899997653

>PRK07478 short chain dehydrogenase; Provisional

Probab=83.66  E-value=10  Score=29.85  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...++..+.++.++.+|+.+...-.       ...++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            46788888776542   3344445565 8999999888777776666555556778888887632110       11134


Q ss_pred             ccEEEEcCCC
Q 027945          118 VDTVVMNPPF  127 (216)
Q Consensus       118 fD~v~~npp~  127 (216)
                      .|.++.|...
T Consensus        84 id~li~~ag~   93 (254)
T PRK07478         84 LDIAFNNAGT   93 (254)
T ss_pred             CCEEEECCCC
Confidence            8999987754

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=83.59  E-value=12  Score=29.33  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=48.3

Q ss_pred             CEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc-------ccccCCCcc
Q 027945           50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE-------WRVCSVGHV  118 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~~~f  118 (216)
                      +++|=.| |+|.++..+++    .|. +|++++.++...+.....+...+.++.++.+|+.+..       .-....+..
T Consensus         2 ~~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         2 KTALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CEEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4567666 55666665554    355 8999999887776666555544446888899987743       111111238


Q ss_pred             cEEEEcCCC
Q 027945          119 DTVVMNPPF  127 (216)
Q Consensus       119 D~v~~npp~  127 (216)
                      |.|+.+...
T Consensus        80 d~vi~~a~~   88 (255)
T TIGR01963        80 DILVNNAGI   88 (255)
T ss_pred             CEEEECCCC
Confidence            999986644

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=83.57  E-value=3.3  Score=35.29  Aligned_cols=45  Identities=40%  Similarity=0.603  Sum_probs=36.3

Q ss_pred             CCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           46 DVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        46 ~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ..++.+||..|||. |..++.+++. |..+++++|.+++..+.++..
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            45678999999887 7788888865 554699999999988888775

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=83.54  E-value=1.8  Score=34.01  Aligned_cols=61  Identities=18%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHH
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAA   92 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~   92 (216)
                      -..-|+..++..+.+.++.+.+|+--|.|.-+..+.+ ..-.++++.|.||.+.+.|+....
T Consensus        27 HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~   88 (303)
T KOG2782|consen   27 HVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD   88 (303)
T ss_pred             CCceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence            4455777777777888999999999999998877775 455689999999999999988764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=83.38  E-value=5.9  Score=29.91  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             EEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH
Q 027945           51 VVADFGCG-CGT-LGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus        51 ~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~   81 (216)
                      +|+-+||| .|. ....+++.|..+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            47788888 455 45666677888999999774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05872 short chain dehydrogenase; Provisional

Probab=83.22  E-value=11  Score=30.71  Aligned_cols=80  Identities=23%  Similarity=0.291  Sum_probs=49.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....+.. +..+..+.+|+.+...-.       ...+
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467789988866552   3444445565 899999998877665554432 224555567876532110       1113


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus        85 ~id~vI~nAG~~   96 (296)
T PRK05872         85 GIDVVVANAGIA   96 (296)
T ss_pred             CCCEEEECCCcC
Confidence            599999987653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=82.80  E-value=6.8  Score=35.91  Aligned_cols=65  Identities=15%  Similarity=0.239  Sum_probs=42.2

Q ss_pred             CEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEE
Q 027945           50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVM  123 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~  123 (216)
                      ..|+=+|||  .++..+++    .+. +++.+|.|++.++.+++.      ...++.+|..+...-. ..-.+.|.+++
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        401 PRVIIAGFG--RFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             CcEEEEecC--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            456665554  45444443    344 899999999999988663      3678999988753221 11124888886

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=82.62  E-value=5.4  Score=30.86  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=25.9

Q ss_pred             CCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCC
Q 027945           48 SNKVVADFGCG-CGT-LGAAATLLGADQVIAIDID   80 (216)
Q Consensus        48 ~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~   80 (216)
                      ...+||=+||| .|. ....+++.|..+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            56789999998 354 4566667788899999977

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.30  E-value=11  Score=33.96  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=40.9

Q ss_pred             CCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEc
Q 027945           57 CGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMN  124 (216)
Q Consensus        57 ~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~n  124 (216)
                      ||.|.++..+++.   ...+++.+|.|++.++.+++.      ....+.+|..+...-. ..-++.|.++..
T Consensus       423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence            5666666666642   234899999999988888742      4788999998743211 111248977764

>PRK06196 oxidoreductase; Provisional

Probab=81.87  E-value=25  Score=28.86  Aligned_cols=76  Identities=25%  Similarity=0.196  Sum_probs=48.0

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++ |.++..++    +.|. +|++++.++...+.+...+.    .+.++.+|+.+...-.       ...
T Consensus        24 l~~k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~   97 (315)
T PRK06196         24 LSGKTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG   97 (315)
T ss_pred             CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence            356789988865 44554444    4455 89999998776655544432    3677888887643110       112


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        98 ~~iD~li~nAg~~  110 (315)
T PRK06196         98 RRIDILINNAGVM  110 (315)
T ss_pred             CCCCEEEECCCCC
Confidence            3589999887643

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=81.81  E-value=6.4  Score=32.82  Aligned_cols=45  Identities=40%  Similarity=0.522  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-.||| .|..++.+++. |..+|+++|.+++.++.+++
T Consensus       166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence            34467889988875 33445555554 66689999999998888865

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=81.73  E-value=13  Score=29.84  Aligned_cols=80  Identities=18%  Similarity=0.124  Sum_probs=51.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|++.|.   +...+++.|. +|+.++.++...+.....+...+.++.++.+|+.+...-.       ...+
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG   86 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356788888876553   3344445565 8999999887766665555544446788889987632111       0113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|.++.+...
T Consensus        87 ~id~li~~ag~   97 (278)
T PRK08277         87 PCDILINGAGG   97 (278)
T ss_pred             CCCEEEECCCC
Confidence            48999987653

>PRK07814 short chain dehydrogenase; Provisional

Probab=81.70  E-value=13  Score=29.60  Aligned_cols=79  Identities=24%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .+++++|-.|+ +|.++..++    ++|. +|++++.++...+.....+...+.++.++.+|+.+...-.       ...
T Consensus         8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814          8 LDDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             CCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35678998886 455554444    4566 9999999987776665555544446778888877643211       011


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|.|+.+.-.
T Consensus        86 ~~id~vi~~Ag~   97 (263)
T PRK07814         86 GRLDIVVNNVGG   97 (263)
T ss_pred             CCCCEEEECCCC
Confidence            348999987654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=81.64  E-value=13  Score=29.32  Aligned_cols=80  Identities=21%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|+ +|.++..+++    .|. +|++++.++...+.....++..+.++.++.+|+.+...-.       ...
T Consensus         8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          8 LTGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46788998885 5555555553    455 8999999988777666666554546778888887632110       112


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|.++.+....
T Consensus        86 ~~~d~li~~ag~~   98 (255)
T PRK07523         86 GPIDILVNNAGMQ   98 (255)
T ss_pred             CCCCEEEECCCCC
Confidence            3489999877654

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=81.52  E-value=13  Score=29.38  Aligned_cols=80  Identities=21%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|=.|++.|.   +...+++.|. +|+.++.+ ...+.+...+...+.++.++.+|+.+...-.       ...+
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG   90 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467889999987653   3344455565 88888887 3444444444443446788888887633211       1113


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      ..|.++.+....
T Consensus        91 ~id~li~~ag~~  102 (258)
T PRK06935         91 KIDILVNNAGTI  102 (258)
T ss_pred             CCCEEEECCCCC
Confidence            489999877653

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=81.42  E-value=5  Score=34.81  Aligned_cols=60  Identities=22%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      |.|+++....++...-   ...++++|+-+|+|. |......++. |+ +|+.+|.++...+.|+.
T Consensus       182 ~g~g~s~~~~i~r~t~---~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         182 YGCRESLIDGIKRATD---VMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM  243 (413)
T ss_pred             chhchhhHHHHHHhcC---CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence            4566666655555431   235789999999995 4444444443 55 89999999988777765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=81.34  E-value=14  Score=28.92  Aligned_cols=78  Identities=24%  Similarity=0.356  Sum_probs=50.1

Q ss_pred             CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      +++++|-.|++ |.++..++    +.|. +|++++.++...+.+...+...+.++.++.+|+.+...-.       ...+
T Consensus         2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   79 (250)
T TIGR03206         2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG   79 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45678888864 44544444    4454 8999999887777666666554446888899987532110       0112


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|+++.+...
T Consensus        80 ~~d~vi~~ag~   90 (250)
T TIGR03206        80 PVDVLVNNAGW   90 (250)
T ss_pred             CCCEEEECCCC
Confidence            48999987765

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=81.34  E-value=2.2  Score=34.81  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           82 DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        82 ~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +.+..+.+.++    ++++.++|+.+......+  .=|+|++||||...
T Consensus       145 ~~L~~~a~~l~----~~~i~~~df~~v~~~a~~--~~dfvY~DPPY~~~  187 (274)
T COG0338         145 ENLKLFAEKLK----NATIENGDFEEVLADADS--GDDFVYCDPPYLPL  187 (274)
T ss_pred             HHHHHHHHHHh----cCeEEcCCHHHHHhhccC--CCcEEEeCCCCCcc
Confidence            33444544444    489999999987663223  13899999999885

>PRK05855 short chain dehydrogenase; Validated

Probab=81.25  E-value=13  Score=33.10  Aligned_cols=79  Identities=27%  Similarity=0.261  Sum_probs=51.8

Q ss_pred             CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+.++|-+|+ +|.++..    +++.|. +|+.++.++...+.....++..+.++.++.+|+.+...-.       ...+
T Consensus       314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  391 (582)
T PRK05855        314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG  391 (582)
T ss_pred             CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            4567887776 4444444    444455 7999999988777766666655557888899987743211       1223


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.++.|.-..
T Consensus       392 ~id~lv~~Ag~~  403 (582)
T PRK05855        392 VPDIVVNNAGIG  403 (582)
T ss_pred             CCcEEEECCccC
Confidence            589999886553

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=81.17  E-value=6.2  Score=29.25  Aligned_cols=91  Identities=20%  Similarity=0.173  Sum_probs=49.0

Q ss_pred             CcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC
Q 027945           58 GCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG  133 (216)
Q Consensus        58 G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~  133 (216)
                      |.|.++..++++    |. +|++.|.+++..+.....      ..+ ...+..+...   .   .|+|++--|    +..
T Consensus         8 GlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~------g~~-~~~s~~e~~~---~---~dvvi~~v~----~~~   69 (163)
T PF03446_consen    8 GLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA------GAE-VADSPAEAAE---Q---ADVVILCVP----DDD   69 (163)
T ss_dssp             --SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT------TEE-EESSHHHHHH---H---BSEEEE-SS----SHH
T ss_pred             chHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh------hhh-hhhhhhhHhh---c---ccceEeecc----cch
Confidence            446666666643    55 899999999777665544      122 2233333322   2   698887555    112


Q ss_pred             CCHHHHHH--HHhhc-CCcEEEEecCccHHHHHHHH
Q 027945          134 VDMDFLSM--ALKVA-SQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       134 ~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .....+..  ++... ++.+++-+.+...+...+..
T Consensus        70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~  105 (163)
T PF03446_consen   70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELA  105 (163)
T ss_dssp             HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHH
T ss_pred             hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhh
Confidence            22334443  44433 46888888887777666666

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=81.04  E-value=15  Score=28.54  Aligned_cols=80  Identities=24%  Similarity=0.226  Sum_probs=50.5

Q ss_pred             CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .++++|-.|+ +|.++..++    ++|. +|++++-++.........+...+.++.++.+|+.+...-.       ...+
T Consensus         5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4568887775 455555444    4455 8999999877666555555544446888889987632110       0112


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      ++|.|+.+.....
T Consensus        83 ~~d~vi~~ag~~~   95 (251)
T PRK12826         83 RLDILVANAGIFP   95 (251)
T ss_pred             CCCEEEECCCCCC
Confidence            4899998875543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=80.99  E-value=15  Score=29.06  Aligned_cols=79  Identities=25%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|+ +|.++..+++    .|. +|+.++.++...+.....+...+.++.++.+|+.+...-.       ...
T Consensus        10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         10 LSGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             cCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46678998884 5566655554    455 8999999887777776666554446778899987632110       011


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|.|+.+...
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            248999987654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=80.78  E-value=14  Score=29.07  Aligned_cols=79  Identities=24%  Similarity=0.304  Sum_probs=50.8

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|+++|.   +...++++|. +++.++.+....+.+...++..+.++.++..|+.+...-.       ...++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56899999966553   2334445565 8889998877776665555544446777888887643110       11134


Q ss_pred             ccEEEEcCCC
Q 027945          118 VDTVVMNPPF  127 (216)
Q Consensus       118 fD~v~~npp~  127 (216)
                      +|.++.+..+
T Consensus        89 ~d~li~~ag~   98 (255)
T PRK06113         89 VDILVNNAGG   98 (255)
T ss_pred             CCEEEECCCC
Confidence            8999987664

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=80.61  E-value=15  Score=29.90  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=26.5

Q ss_pred             CCCCCEEEEecCC-cchH-HHHHHHcCCCeEEEEeCC
Q 027945           46 DVSNKVVADFGCG-CGTL-GAAATLLGADQVIAIDID   80 (216)
Q Consensus        46 ~~~~~~vLD~g~G-~G~~-~~~l~~~~~~~v~~~D~~   80 (216)
                      ...+.+|+-+||| .|.. ...|++.|..+++.+|.+
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3467789999998 5654 555667788899999966

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=80.33  E-value=15  Score=29.09  Aligned_cols=76  Identities=20%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      +++++|-.|++.|.   +...+++.|. +|+.++.++..++......   +.++.++++|+.+...-.       ...++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAFGK   80 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            56789999976553   3344445565 8999999887665554432   225677888876632111       11235


Q ss_pred             ccEEEEcCCC
Q 027945          118 VDTVVMNPPF  127 (216)
Q Consensus       118 fD~v~~npp~  127 (216)
                      .|.++.|..+
T Consensus        81 id~li~~ag~   90 (263)
T PRK06200         81 LDCFVGNAGI   90 (263)
T ss_pred             CCEEEECCCC
Confidence            8999988765

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=80.23  E-value=6.9  Score=32.97  Aligned_cols=46  Identities=35%  Similarity=0.479  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.++.-+|||. |...+.-++ .++.+++++|+++.-++.|++-
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f  229 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF  229 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence            455777888888873 444444443 3788999999999999998875

>PRK08643 acetoin reductase; Validated

Probab=80.09  E-value=15  Score=28.93  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             CCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           49 NKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      ++++|-.|+..| ++..    +++.|. +|+.++.++...+.+...+...+.++.++.+|+.+...-.       ...++
T Consensus         2 ~k~~lItGas~g-iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQG-IGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            356777775544 4444    444455 8999999887777666666554446778889987643110       11134


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|.++.+..+.
T Consensus        80 id~vi~~ag~~   90 (256)
T PRK08643         80 LNVVVNNAGVA   90 (256)
T ss_pred             CCEEEECCCCC
Confidence            89999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
1wy7_A	207	Crystal Structure Of A Putative Rna Methyltransfera		6e-21
1ne2_A	200	Crystal Structure Of Thermoplasma Acidophilum 1320		1e-11

>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase Ph1948 From Pyrococcus Horikoshii Length = 207

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 12/205 (5%)
Query: 4   KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXX 63
           K+L   L  L+ F NPKV LEQY T  + AS +L+ A  S GD+  KVVAD         
Sbjct: 6   KELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTGVLS 64
Query: 64  XXXXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM 123
                    +VI +++D +++++  EN  + +        D+     R      VD V+ 
Sbjct: 65  YGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR------VDIVIX 118
Query: 124 NPPFGTRKKGVDMDFLSMALKVASQAVYSLH--KTSTREHVKKAALRDFNASSAEVLCEL 181
           NPPFG+++K  D  FL  A ++ S  VYS+H  K   R  ++K +       +  +  ++
Sbjct: 119 NPPFGSQRKHADRPFLLKAFEI-SDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKI 177
Query: 182 RYDVPQLYKFHKKKEVDIAVDLWRF 206
             ++P  + FH+KK   I VD++RF
Sbjct: 178 --EIPLQFFFHRKKLERITVDIYRF 200

>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320 (Apc5513) Length = 200

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 17/188 (9%)
Query: 6   LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXXXX 65
           LE  L  L+Q  N K  LEQYPT    A+  L    N  G++  + V D           
Sbjct: 10  LEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACG 68
Query: 66  XXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125
                 + V A DID D++E A  N       ++F   D+  +       G  DT + NP
Sbjct: 69  SYLLGAESVTAFDIDPDAIETAKRNCGG----VNFXVADVSEIS------GKYDTWIXNP 118
Query: 126 PFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY-D 184
           PFG+  K  D  F+  A +  S  +YS+     R+ ++    R+F+A       E  Y  
Sbjct: 119 PFGSVVKHSDRAFIDKAFET-SXWIYSIGNAKARDFLR----REFSARGDVFREEKVYIT 173
Query: 185 VPQLYKFH 192
           VP++Y+ H
Sbjct: 174 VPRIYRHH 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	8e-65
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	4e-59
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	4e-14
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	5e-14
2qm3_A	373	Predicted methyltransferase; putative methyltransf	4e-13
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	1e-12
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	1e-12
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	2e-12
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	5e-12
3lpm_A	259	Putative methyltransferase; structural genomics, p	7e-12
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	4e-11
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	2e-10
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-10
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	3e-10
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-10
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	4e-10
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	9e-10
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-09
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	2e-09
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-09
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	4e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	6e-09
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	6e-09
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	6e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	9e-09
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	1e-08
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-08
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-08
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	5e-08
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	7e-08
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-08
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	8e-08
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	8e-08
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-07
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-07
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	1e-07
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	1e-07
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-07
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	2e-07
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	3e-07
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	3e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	3e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2b3t_A	276	Protein methyltransferase HEMK; translation termin	4e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	4e-07
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	5e-07
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	6e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	6e-07
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	6e-07
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	1e-06
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-06
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-06
3ll7_A	410	Putative methyltransferase; methytransferase, stru	1e-06
2frn_A	278	Hypothetical protein PH0793; structural genomics,	1e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-06
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	1e-06
2h00_A	254	Methyltransferase 10 domain containing protein; st	1e-06
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	2e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-06
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	2e-06
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	2e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	3e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-06
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	4e-06
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	4e-06
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	5e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-06
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	5e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-06
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	7e-06
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	7e-06
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	8e-06
2p7i_A	250	Hypothetical protein; putative methyltransferase,	9e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-05
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	1e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-05
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	2e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-05
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	2e-05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-05
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	3e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-05
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	3e-05
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	3e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	4e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	4e-05
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	5e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	5e-05
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	6e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-05
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	8e-05
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	9e-05
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	9e-05
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-04
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-04
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-04
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	1e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	1e-04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	1e-04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	1e-04
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	1e-04
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	2e-04
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	2e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	2e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	2e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	3e-04
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-04
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	3e-04
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	4e-04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	4e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	4e-04
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	4e-04
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	4e-04
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	4e-04
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	5e-04
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	6e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	6e-04
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	6e-04
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	6e-04
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	7e-04
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	7e-04
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	8e-04

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score =  198 bits (504), Expect = 8e-65
 Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 19/208 (9%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
                LE  L  L+Q  N K  LEQYPT    A+  L    N  G++  + V D G G G
Sbjct: 5   GIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNG 63

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
            L   + LLGA+ V A DID D++E A  N       ++F+  D+  +       G  DT
Sbjct: 64  ILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS------GKYDT 113

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE 180
            +MNPPFG+  K  D  F+  A + +   +YS+     R+ +++       ++  +V  E
Sbjct: 114 WIMNPPFGSVVKHSDRAFIDKAFETSM-WIYSIGNAKARDFLRREF-----SARGDVFRE 167

Query: 181 LRY--DVPQLYKFHKKKEVDIAVDLWRF 206
            +    VP++Y+ H      I   ++  
Sbjct: 168 EKVYITVPRIYRHHSYDRARIEAVIFGV 195

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score =  184 bits (467), Expect = 4e-59
 Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 1   MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
            + K+L   L  L+ F NPKV LEQY T  + AS +L+ A  S GD+  KVVAD G G G
Sbjct: 3   TRKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTG 61

Query: 61  TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDT 120
            L   A LLGA +VI +++D +++++  EN  + +        D+     R      VD 
Sbjct: 62  VLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR------VDI 115

Query: 121 VVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH--KTSTREHVKKAALRDFNASSAEVL 178
           V+MNPPFG+++K  D  FL  A +++   VYS+H  K   R  ++K +    +       
Sbjct: 116 VIMNPPFGSQRKHADRPFLLKAFEISD-VVYSIHLAKPEVRRFIEKFSWE--HGFVVTHR 172

Query: 179 CELRYDVPQLYKFHKKKEVDIAVDLWRF 206
              + ++P  + FH+KK   I VD++RF
Sbjct: 173 LTTKIEIPLQFFFHRKKLERITVDIYRF 200

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 69.2 bits (169), Expect = 4e-14
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 27  PTGPHIASRML---YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83
                 AS +L            V  + V D G G G L      +GA +V+ ++ D  S
Sbjct: 209 AGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLAS 267

Query: 84  LELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127
           +    +      L    +  D+      +      D +V NPPF
Sbjct: 268 VLSLQKGLEANALKAQALHSDVDE---ALTEEARFDIIVTNPPF 308

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 32  IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASEN 90
           + S++L    ++    +   V D GCG G L  A        ++   D+ + ++E +   
Sbjct: 183 VGSQLLL---STLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRAT 239

Query: 91  AADLELDIDFVQCDI-RNLEWRVCSVGHVDTVVMNPPF 127
            A   ++ +    ++   ++      G  D ++ NPPF
Sbjct: 240 LAANGVEGEVFASNVFSEVK------GRFDMIISNPPF 271

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373

 Score = 66.2 bits (161), Expect = 4e-13
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 3   LKQLESVLGDLEQFSN----PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGC 57
           L+    +L    +       P  E +Q Y T     +R++       GD+ NK +   G 
Sbjct: 124 LQAFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTR--GDLENKDIFVLGD 181

Query: 58  GCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVG 116
              T  A        ++  +DID    +   + A ++   DI+    D+R       ++ 
Sbjct: 182 DDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRK-PLPDYALH 240

Query: 117 HVDTVVMNPPFGTRKKGVDMDFLS---MALKVASQAVY 151
             DT + +PP     + +   F+      LK    A Y
Sbjct: 241 KFDTFITDPPET--LEAIRA-FVGRGIATLKGPRCAGY 275

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 32  IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91
             +++L   EN      +  + D GCG G +G A            DI+  +++LA EN 
Sbjct: 39  KGTKIL--VEN-VVVDKDDDILDLGCGYGVIGIAL-ADEVKSTTMADINRRAIKLAKENI 94

Query: 92  ADLELD---IDFVQCDIRNLEWRVCSVGHVDTVVMNPPF 127
               LD   I  V  D+   E         + ++ NPP 
Sbjct: 95  KLNNLDNYDIRVVHSDL--YENV--KDRKYNKIITNPPI 129

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSL 84
              P +A  +L  A+   G      V D   G GT+   A         V A D+D   L
Sbjct: 186 SLTPVLAQALLRLADARPGMR----VLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRL 241

Query: 85  ELASENAADLELD-IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
            LA E A    L  I F++ D R+L         VD ++ NPP G R
Sbjct: 242 GLAREAALASGLSWIRFLRADARHLPRFF---PEVDRILANPPHGLR 285

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLE 85
                IA+ M+  AE     +    V D  CG GT+     L     ++I I+     L 
Sbjct: 201 HLKASIANAMIELAE-----LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLI 255

Query: 86  LASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
            A  NA  A +   I F+Q D   L   V SV      + N P+G +
Sbjct: 256 GAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDF---AISNLPYGLK 299

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 23/47 (48%), Positives = 26/47 (55%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92
            V    VAD G G G L  AA  LGA  V+A DI  +S+  A ENAA
Sbjct: 58  MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAA 104

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 62.1 bits (151), Expect = 7e-12
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQCDIRNLE 109
           + D   G G +    +     +++ ++I     ++A  + A   LE  I+ ++ D++ + 
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI- 111

Query: 110 WRVCSVGHVDTVVMNPPF 127
             +      D V  NPP+
Sbjct: 112 TDLIPKERADIVTCNPPY 129

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105
                 V D G G G L  AA  LG  + + +DID   L  A  NA    +   F++  +
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL 176

Query: 106 RNLEWRVCSVGHVDTVVMN 124
                     G  D +V N
Sbjct: 177 EAALPF----GPFDLLVAN 191

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 31  HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN 90
           HIA R+              VV D  CG G       L G  +VIAIDID   + LA  N
Sbjct: 68  HIAGRVS-------QSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNN 119

Query: 91  AADLELD--IDFVQCDIRNLEWRVCSVGHVDTVVMNPPF-GTRKKGVDMDFLSMALKVAS 147
           A    +   I+F+  D   L   +      D V ++PP+ G      +   +   +    
Sbjct: 120 AEVYGIADKIEFICGDFLLLASFL----KADVVFLSPPWGGPDYATAETFDIRTMMSPDG 175

Query: 148 QAVYSLHKTSTR 159
             ++ L K  T 
Sbjct: 176 FEIFRLSKKITN 187

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
             D + K V D GCG G     A   GA +V+ ID+    L  A          + + Q 
Sbjct: 40  LPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS--PVVCYEQK 97

Query: 104 DIRNLEWRVCSVGHVDTVVMN 124
            I ++     +    + V+ +
Sbjct: 98  AIEDIAIEPDA---YNVVLSS 115

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 52  VADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLELD----IDFVQCDIR 106
           + D GCG G +G          +V+ +D    ++  +  N      +     +F+  +  
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA- 284

Query: 107 NLEWRVCSVGHVDTVVMNPPF 127
            L          + V+ NPPF
Sbjct: 285 -LSGV--EPFRFNAVLCNPPF 302

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
             +V    + D GCG G     A   GA  V+ +D+    L  A     D    I + + 
Sbjct: 39  LPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERA 96

Query: 104 DIRNLE 109
           D+  L 
Sbjct: 97  DLDKLH 102

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 56.4 bits (137), Expect = 4e-10
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 48  SNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI- 105
           S   V D G G G +  + A       V A+D+  D+L +A  NA      +D+   D  
Sbjct: 30  SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGI 89

Query: 106 RNLEWRVCSVGHVDTVVMNPP 126
             L  R         +V NPP
Sbjct: 90  EWLIERAERGRPWHAIVSNPP 110

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 56.0 bits (135), Expect = 9e-10
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 52  VADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAA-----DLELDIDFVQCDI 105
           +AD G G G  G A A  L   +V   +   +  E A  +            I+ ++ D+
Sbjct: 40  IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99

Query: 106 RNLE----WRVCSVGHVDTVVMNPPF 127
                          H   V+MNPP+
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNPPY 125

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 5   QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGA 64
           ++E++  DLE       + E Y +  +  + +     ++   +S   V D GCG G    
Sbjct: 77  RVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSL 136

Query: 65  AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124
             +LLG D V + D + +S+   +E      L+I     DI     +     + D +V  
Sbjct: 137 YLSLLGYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQ----ENYDFIVST 191

Query: 125 PPFG 128
             F 
Sbjct: 192 VVFM 195

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 42  NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV 101
                   + V D  CG G         G + V+ +D+  + L +A   A +  L I+F+
Sbjct: 35  KEDAKREVRRVLDLACGTGIPTLELAERGYE-VVGLDLHEEMLRVARRKAKERNLKIEFL 93

Query: 102 QCDIRNLEWRVCSVGHVDTVVM 123
           Q D+  + ++       D V M
Sbjct: 94  QGDVLEIAFK----NEFDAVTM 111

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 52  VADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           + D+GCG G LG     LL    +   ID     L  A E    L  D +F++ D   +E
Sbjct: 26  IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 85

Query: 110 WRVCSVGHVDTVVMN 124
                    D  + +
Sbjct: 86  LN----DKYDIAICH 96

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           V D  CG G         G + V+ +DI  D +  A E A   E +++F+  D R L 
Sbjct: 42  VLDLACGVGGFSFLLEDYGFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS 98

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 25  QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDS 83
           Q P  P +  + L   +N        ++AD GCG G      A  +   QV  +D  S  
Sbjct: 26  QGPGSPEVTLKALSFIDNLT---EKSLIADIGCGTGGQTMVLAGHVTG-QVTGLDFLSGF 81

Query: 84  LELASENAADLELD--IDFVQCDIRNLEWRVCSVGHV--DTVVMNPPF 127
           +++ + NA    L   +  +   + +L +R   +  +  +  + N  F
Sbjct: 82  IDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGF 129

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 53.9 bits (129), Expect = 6e-09
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 51  VVADFGCGCG--TLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
           VVA   CG     L    +     Q++ ID D ++L+ A+  AA   L   I   + D  
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180

Query: 107 NLEWRVCSVGHVDTVVMN 124
            L+ R       D +  N
Sbjct: 181 KLDTR----EGYDLLTSN 194

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 15/77 (19%), Positives = 21/77 (27%), Gaps = 5/77 (6%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
           +      D  CG G L         +   A+D+  + L  A        L       DI 
Sbjct: 36  LVFDDYLDLACGTGNLTENLCPKFKN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS 94

Query: 107 NLEWRVCSVGHVDTVVM 123
           NL          D +  
Sbjct: 95  NLNIN----RKFDLITC 107

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 53.6 bits (128), Expect = 6e-09
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 12  DLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGA--AATLL 69
           ++ +  +P   L  +   P     +L            +     G G   L     + + 
Sbjct: 87  EVIESDSPWETLRSFYFYPRY-LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVY 145

Query: 70  GADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEWRVCSVGHVDTVVMNP 125
           G  +V  ++I+ D  EL+ +    L +D ++ +  D   ++     V  V  +    
Sbjct: 146 GM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEPK 201

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 49  NKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
            K +AD GCG GT      LL AD  +V  +D+  + LE+A E A +    +DF   D+R
Sbjct: 34  GKRIADIGCGTGTA---TLLL-ADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR 89

Query: 107 NLEWRVCSVGHVDTVVM 123
            LE        VD + +
Sbjct: 90  ELELP----EPVDAITI 102

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQCDIR 106
              V D     G     A + GAD+VI ID    ++E A ENA    +E  + F+     
Sbjct: 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF 277

Query: 107 N-LEWRVCSVGHVDTVVMNPP-FGTRKKGVD 135
             +E         D VV++PP F   +K + 
Sbjct: 278 EEMEKLQKKGEKFDIVVLDPPAFVQHEKDLK 308

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
                 + V D GCG G L  A    G +  + +D D   ++ A    A       + Q 
Sbjct: 48  ILGRQPERVLDLGCGEGWLLRALADRGIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQL 106

Query: 104 DIRNLEWRVCSVGHVDTVVMN 124
               +          D +  N
Sbjct: 107 AEAKVPVG----KDYDLICAN 123

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           +K V D G G      +  +    +   I+I    L+ A   + +    ++  + DIR L
Sbjct: 24  DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL 83

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFV 101
                 K VAD G G G +G +        V A D+ S ++E+A +NA    +       
Sbjct: 119 IRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 178

Query: 102 QCDIRNLEWRVCSVGHVDTVVMNPP 126
           + +   LE        ++ ++ NPP
Sbjct: 179 KGEF--LEPFKEKFASIEMILSNPP 201

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 49.9 bits (119), Expect = 7e-08
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 21  VELEQYPTGPH-IASRMLYTAENSFGDVSNKVVADFGCGCGTL-GAAATLLGADQVIAID 78
           +E E     P  +  + +     +    + + V D GCG G L          +Q+  +D
Sbjct: 1   MEEEAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVD 60

Query: 79  IDSDSLELASENAADLELDIDF---VQCDIRNLEWRVCSVGHVDTVVMNPPF 127
           +   SLE+A E    L L  +    +Q     L ++       D   +    
Sbjct: 61  VSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVI 112

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103
            ++     D G G G L  A        + A+D      E+A +N AD  L+  I  VQ 
Sbjct: 41  GITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG 100

Query: 104 DIRNL 108
           D+ N+
Sbjct: 101 DVHNI 105

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 50.7 bits (120), Expect = 8e-08
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 49  NKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107
            + V D GC  G L  + A   G  +++ +DIDS  +  A +N        + ++   + 
Sbjct: 47  GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIR--HYLSEELRLPPQT 104

Query: 108 LEWRVCSVGHVDTVVMNP 125
           LE    + G   T  +  
Sbjct: 105 LEGDPGAEGEEGTTTVRK 122

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELDIDFVQCDIR 106
           N VV D   G G    A     A ++ AIDI+  ++EL  +N     LE  I  +  D+R
Sbjct: 196 NDVVVDMFAGVGPFSIAC--KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVR 253

Query: 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV 145
            ++         + V+MN P           F+  AL +
Sbjct: 254 EVD------VKGNRVIMNLPKFAH------KFIDKALDI 280

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 52  VADFGCGCGTL-GAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108
           V + GCG G      A      ++ +IDI  +SLE A EN     + ++ F+Q +I +L
Sbjct: 41  VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           + D GCG G +G   +  G D V+  D+D   ++ A ++  +      +V  D+   +  
Sbjct: 50  ILDAGCGQGRIGGYLSKQGHD-VLGTDLDPILIDYAKQDFPEAR----WVVGDLSVDQI- 103

Query: 112 VCSVGHVDTVVMN 124
             S    D +V  
Sbjct: 104 --SETDFDLIVSA 114

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 6/78 (7%)

Query: 49  NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD--IDFVQCDI 105
             ++ D G     L       G     IA ++     + A +N     L   I     + 
Sbjct: 16  GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG 75

Query: 106 RNLEWRVCSVGHVDTVVM 123
             L         V  + +
Sbjct: 76  --LAA-FEETDQVSVITI 90

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 13/125 (10%)

Query: 25  QYPTGPHIASRM---LYTAENSFGDVSNKVVADFGCGCGTLGAAATL----LGADQVIAI 77
             PT      ++   +           ++V++D   G G L A  +     +   Q+ A 
Sbjct: 296 VVPT-DIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWAN 354

Query: 78  DIDSDSLELASENAADLELDI--DFVQCDIRN---LEWRVCSVGHVDTVVMNPPFGTRKK 132
           DI++  LEL S     L   +        I              +V  VVMNPP+ +   
Sbjct: 355 DIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVT 414

Query: 133 GVDMD 137
              + 
Sbjct: 415 DPAIK 419

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 51  VVADFGCGCGTL-GAAATLLGAD-QVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN 107
            V D G G G      + ++G   +V AID+  + +  A E    L L  ++ ++ +   
Sbjct: 40  TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99

Query: 108 LEWRVCSVGHVDTVVMN 124
           +   +     VD + M 
Sbjct: 100 I--PLPD-NTVDFIFMA 113

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           V D  CG G         G   V ++D     L+ A +   +   +  F +  I    W 
Sbjct: 61  VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 119

Query: 112 VCS-----VGHVDTVVM 123
                       D V+ 
Sbjct: 120 TLDKDVPAGDGFDAVIC 136

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           +   GCG   L     L G   V ++D  S  +       A +   + +   D+R L++ 
Sbjct: 46  ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP-QLRWETMDVRKLDFP 104

Query: 112 ------VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAV 150
                 V   G +D ++             +  +   L   S+ +
Sbjct: 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVL 149

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
                + + D GCG G L       GA +V+  D  +  +E A +N       + F   D
Sbjct: 54  NPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNYP----HLHFDVAD 108

Query: 105 IRNLEWRVCSVGHVDTVVMN 124
            RN          +D V  N
Sbjct: 109 ARNFRVD----KPLDAVFSN 124

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 48  SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
            N+ +AD G     L   A     A   IA ++     + A +      L  + +     
Sbjct: 21  KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-EQIDVRKG 79

Query: 107 NLEWRVCSVGHVDTVV 122
           N    +     +DT+V
Sbjct: 80  NGLAVIEKKDAIDTIV 95

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD---IDFVQC 103
           V NK V +     G    +A + G  QV+++D   ++L++A +N    +LD    +FV+ 
Sbjct: 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD 278

Query: 104 DIRN-LEWRVCSVGHVDTVVMNPP-FGTRKKGVD 135
           D+   L          D +VM+PP F   K  + 
Sbjct: 279 DVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLM 312

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 49  NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD--IDFVQCD 104
              + D G     L      +G  D  IA ++ +   + A +N ++  L   ID    +
Sbjct: 22  GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN 80

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEW 110
             D GCG G         G D V A D ++ S+       +   LD +     D+ NL +
Sbjct: 36  TLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94

Query: 111 RVCSVGHVDTVVMN 124
                   D ++  
Sbjct: 95  D----RQYDFILST 104

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 49  NKVVADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDI 105
           +  +AD GCG G      A  +   Q+  ID+  D +E+ +ENA        +  +   +
Sbjct: 47  DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM 105

Query: 106 RNLEWRVCSVGHV--DTVVMNPPF 127
            NL ++   +  +  +  + N  F
Sbjct: 106 DNLPFQNEELDLIWSEGAIYNIGF 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 39/229 (17%), Positives = 68/229 (29%), Gaps = 58/229 (25%)

Query: 3   LKQLESVLGDLEQFSNPKVE-LEQYPTGPHIAS---RMLYTAE---NSF---GDVSN-KV 51
           L+ L+ +L  ++     + +         H      R L  ++   N      +V N K 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 52  VADFGCGCGTL-----GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
              F   C  L           L A     I +D  S+ L  +      L + ++ C  +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQ 316

Query: 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR-EHVKKA 165
           +L   V +         NP                 L + ++++     T    +HV   
Sbjct: 317 DLPREVLTT--------NP---------------RRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 166 ALRDFNASSAEVL--CELRYDVPQLYK----FHKKKEVDIAVD----LW 204
            L     SS  VL   E R    +++     F       I       +W
Sbjct: 354 KLTTIIESSLNVLEPAEYR----KMFDRLSVF--PPSAHIPTILLSLIW 396

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 52  VADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLE 109
           + D G G G +  A A+     ++IA+D   D++ LA  NA  L +  I  +Q D     
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD----- 167

Query: 110 W-RVCSVGHVDTVVMNPP 126
           W    +      +V NPP
Sbjct: 168 WFSALAGQQFAMIVSNPP 185

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDF 100
           N V  D GCG G +          +V AID + +++     N     L  + 
Sbjct: 34  NDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNV 84

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 23/122 (18%)

Query: 24  EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVI-------- 75
            Q  T   I   + Y  E       N  + D  CG   L     L      +        
Sbjct: 107 HQM-TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANL-----LTTVINQLELKGDVDV 160

Query: 76  ---AIDIDSDSLELASENAADLELDIDFVQCD-IRNLEWRVCSVGHVDTVVMNPPFGTRK 131
               +D+D   + LA   A      +  +  D + NL      V  VD V+ + P G   
Sbjct: 161 HASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLL-----VDPVDVVISDLPVGYYP 215

Query: 132 KG 133
             
Sbjct: 216 DD 217

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCD 104
             +V  + G G   +    A      +V A ++D +  E A  N      +  +      
Sbjct: 55  GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114

Query: 105 I-RNLEWRVCSVGHVDTVVMNPP 126
           I + +       G  D +   PP
Sbjct: 115 IIKGVV-----EGTFDVIFSAPP 132

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 51  VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           V  + G G G +       G  + IA+D D+  LE+  +  A ++  +  VQ D R +  
Sbjct: 42  VFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPL 100

Query: 111 RVCSVGHVDTVVMN 124
                  V  V++ 
Sbjct: 101 P---DESVHGVIVV 111

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           V +FG G G L     L G   V  I+   +   +A E       +    + D  + E  
Sbjct: 49  VLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPK---EFSITEGDFLSFEVP 104

Query: 112 VCSVGHVDTVVMN 124
                 +DT+V  
Sbjct: 105 ----TSIDTIVST 113

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD---- 104
            + V D     G     A   GA   +A+D D ++L +  + A  L L +D    +    
Sbjct: 215 GERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT 273

Query: 105 IRNLEWRVCSVGHVDTVVMNPP-FGTRKKGVD 135
           +R LE           V+++PP    R + + 
Sbjct: 274 LRGLEGP------FHHVLLDPPTLVKRPEELP 299

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
              + D  CG GT     T    D    +++  D L  A +   D        Q D+R+ 
Sbjct: 41  ASSLLDVACGTGTHLEHFTKEFGD-TAGLELSEDMLTHARKRLPDAT----LHQGDMRDF 95

Query: 109 EWRVCSVGHVDTVVM 123
                       VV 
Sbjct: 96  RLG----RKFSAVVS 106

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI----DFVQCDIRN 107
           V +   G G L      LG + V A+++ +  L    +  A+   D+      VQ D+  
Sbjct: 86  VLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144

Query: 108 LEWRVCSVGHVDTVVM 123
                       TVV+
Sbjct: 145 FALD----KRFGTVVI 156

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 48  SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD---IDFVQCD 104
               V D   G G    A     + Q I I+ + ++   A  N   L  +   ++ +  D
Sbjct: 93  EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGD 151

Query: 105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSM 141
            +     +    H D + ++P   +            
Sbjct: 152 FKEY-LPLIKTFHPDYIYVDPARRSGADKRVYAIADC 187

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
           +++V D   G G L     + G  +VIAI+ D  + +   EN    +++  +     D R
Sbjct: 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR 185

Query: 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 146
           +           D ++M     T       +F+  AL +A
Sbjct: 186 D----FPGENIADRILMGYVVRTH------EFIPKALSIA 215

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELAS 88
           P        +   +  D  N  + D G G G L A             +D+    LE+A 
Sbjct: 26  PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK 85

Query: 89  ENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124
                  L + +++ D    ++        D VV  
Sbjct: 86  NRFRG-NLKVKYIEADYSKYDFE----EKYDMVVSA 116

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 18/106 (16%)

Query: 25  QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAA--TLLGADQVIAIDIDSD 82
           +  T P +   M+    +         V +  C  G    A       A + + ++ID  
Sbjct: 20  RVETPPEVVDFMV----SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK 75

Query: 83  SLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG 128
           +L+L            + +  D    E         D ++ NPP+G
Sbjct: 76  ALDLPPWA--------EGILADFLLWEPG----EAFDLILGNPPYG 109

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 21/164 (12%)

Query: 3   LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYT-------AENSFGDVSNKVVADF 55
           ++ L   L  L +     +++      P +  R+ Y                + +   D 
Sbjct: 15  VRALTCTL--LREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDI 72

Query: 56  GCGCGTLGAAATLLGAD----QVIAIDIDSDSLELASENAA--DLELDIDFVQCDIRNLE 109
           G G   +     LLGA       +A ++D      A +N    +L   I  V+   + L 
Sbjct: 73  GTGASCI---YPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129

Query: 110 WRVC---SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAV 150
                  S    D  + NPPF   +            +    +V
Sbjct: 130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSV 173

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Length = 393

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 73  QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
            +I  DID+  +E+A +NA  A L   I F Q  + + +    +      VV NPP+G R
Sbjct: 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQ----TEDEYGVVVANPPYGER 320

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 21  VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDI 79
           ++ E+     ++  + L T       V+ K V D GCG G L +        +Q+  +D+
Sbjct: 2   LKNEETEKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDV 61

Query: 80  DSDSLELASENAADLELD------IDFVQCDIRNLEWRVCSVGHVDTVVMN 124
               LE A +      L       I   Q  +   + R       D   + 
Sbjct: 62  SYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR---FSGYDAATVI 109

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Length = 703

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 73  QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
                D D+  ++ A  NA  A +   I F   D+  L       G   TV+ NPP+G R
Sbjct: 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLT-NPLPKGPYGTVLSNPPYGER 316

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Length = 385

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 73  QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
           ++   DID +S+++A ENA  A ++  I+F   D    +    S      ++ NPP+G R
Sbjct: 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFK----SEDEFGFIITNPPYGER 314

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 17/119 (14%)

Query: 6   LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA 65
           +  VLG ++   +  +E           SR       S          D G G G +   
Sbjct: 64  VSGVLGGMDHVHDVDIE----------GSRNFI---ASLPGHGTSRALDCGAGIGRITKN 110

Query: 66  ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124
                      ++     LE A    A + +   F+   +             D +V+ 
Sbjct: 111 LLTKLYATTDLLEPVKHMLEEAKRELAGMPV-GKFILASMETATL---PPNTYDLIVIQ 165

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           + DF CG GT     +     +VI +D+   +LE+A++       +I +   D    E 
Sbjct: 60  LIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQ 115

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQ 102
           + VV D GCG G +           V AID    ++E+  +N A   +     ++
Sbjct: 36  DDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK 89

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 16/147 (10%)

Query: 37  LYTAENSFGDVSNKVVADFGCGCGTLG--AAATLLGADQVIAIDIDSDSLELASENAA-- 92
           L              VAD     G             ++  A DI S ++E+  EN    
Sbjct: 41  LGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN 100

Query: 93  DLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYS 152
           ++  D   +     N   R       D V ++P       G  + F+        +    
Sbjct: 101 NIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPF------GTPVPFIESVALSMKRGGI- 153

Query: 153 LHKTSTREHV-----KKAALRDFNASS 174
           L  T+T          K  +R + A  
Sbjct: 154 LSLTATDTAPLSGTYPKTCMRRYMARP 180

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 9/72 (12%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           + D  CG G             V  +++ +D L +A     D          D+R+    
Sbjct: 54  LLDVACGTGMHLRHLADSFGT-VEGLELSADMLAIARRRNPDAV----LHHGDMRDFSLG 108

Query: 112 VCSVGHVDTVVM 123
                    V  
Sbjct: 109 ----RRFSAVTC 116

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           + D G G G        LG   +  ++  +  +ELA +        + F    I +L
Sbjct: 45  ILDVGSGTGRWTGHLASLGHQ-IEGLEPATRLVELARQTHP----SVTFHHGTITDL 96

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Length = 384

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 73  QVIAIDIDSDSLELASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR 130
            +   D D   +E+A +NA    LE  +   Q  +++ +      G    ++ NPP+G R
Sbjct: 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGV---LISNPPYGER 313

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
           +     G G        LG  +V A+D  S  L  A + A +  + I  VQ ++ + + 
Sbjct: 33  ILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI 90

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 60  GTLGAAATLLGADQVIAIDIDSDSLELASENAA--DLELD-IDFVQCDIRN-LEWRVCSV 115
                AA + GA    ++D+   S  L+  +     L++     V  D+ +  ++     
Sbjct: 224 AAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHH 283

Query: 116 GHVDTVVMNPP-FGTRKKGVD 135
              D ++++PP F   KK V 
Sbjct: 284 LTYDIIIIDPPSFARNKKEVF 304

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 52  VADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110
             D GCG G          G + +  ID D D LE A++   +      F + D+   + 
Sbjct: 37  GYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN----FGKADLATWKP 92

Query: 111 RVCSVGHVDTVVMN 124
                   D +  N
Sbjct: 93  A----QKADLLYAN 102

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 43.7 bits (103), Expect = 8e-06
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 49  NKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIR 106
             +V D   G G     A L G + +V A D+   +L   S+  +DL ++  + +     
Sbjct: 23  ESIVVDATMGNG--NDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80

Query: 107 NLE 109
           NL+
Sbjct: 81  NLD 83

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 8/78 (10%)

Query: 47  VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
                + + G   G   +       D +  ++   +++  A      L+  I ++     
Sbjct: 41  FRPGNLLELGSFKGDFTSRLQEHFND-ITCVEASEEAISHAQGR---LKDGITYIHSRFE 96

Query: 107 NLEWRVCSVGHVDTVVMN 124
           + +         D +V+ 
Sbjct: 97  DAQLP----RRYDNIVLT 110

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           V +   G G      + L    V A+D  ++ +  A  +  D   +++F Q D+ +    
Sbjct: 50  VLELASGTGYWTRHLSGLADR-VTALDGSAEMIAEAGRHGLD---NVEFRQQDLFDWTPD 105

Query: 112 VCSVGHVDTVVMN 124
                  D V   
Sbjct: 106 ----RQWDAVFFA 114

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 44  FGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQ 102
                 +   D     G       L G  +V+A+D  +++L  A ENA    L  +  ++
Sbjct: 205 MERFRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE 263

Query: 103 CDIRN-LEWRVCSVGHVDTVVMNPP-FGTRKKGVD 135
            +  + L          D VV++PP F   KK V+
Sbjct: 264 ANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVE 298

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 6/73 (8%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
             + GC  G            ++  ID+   ++  A +        I +   DI      
Sbjct: 55  GLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFS-- 110

Query: 112 VCSVGHVDTVVMN 124
             +    D +V+ 
Sbjct: 111 --TAELFDLIVVA 121

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 49  NKVVADFGCGCGTLG--AAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDI 105
            + + D   G GT G   A        V   D +  ++E+A  N     +D    V  D 
Sbjct: 291 GEKILDMYSGVGTFGIYLAK---RGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDR 347

Query: 106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVA 146
                    V   DTV+++PP   R  G+    +    +  
Sbjct: 348 EVS------VKGFDTVIVDPP---R-AGLHPRLVKRLNREK 378

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           V D GCG G      +  G  + + +DI    ++   E       D+ F++ D+ +L
Sbjct: 57  VLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG--PDLSFIKGDLSSL 110

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG-TLGAAATLLGADQVIAIDIDSDSLE 85
            T   + ++M+   + +  D+      D G G G  +   A          ++      +
Sbjct: 156 ETSFDLVAQMIDEIKMTDDDL----FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAK 211

Query: 86  LASENAADLE----------LDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124
            A     +             +    + D  + EWR   + +   + +N
Sbjct: 212 YAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE-RIANTSVIFVN 259

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           +  +    V+ D+GCG G            ++  IDI+  +L+   E    +    D
Sbjct: 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSD 67

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 45  GDVSNKVVADFGCGC-GTL-GAAATLLGADQVIAIDIDSDSLELASENAAD 93
           G      V   G G  G +    A  +GA QV+  D+ +  L  A E  AD
Sbjct: 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNL 108
           V D G G G    A +     + I +D   + +E+AS  A +  ++ + F Q    +L
Sbjct: 25  VLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL 81

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 14/71 (19%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCG----CGTLGAAATLLGADQVIAIDIDSD 82
            TG H A      A    GD     V   G G        GA    LGA ++ A+     
Sbjct: 153 TTGFHGAEL----ANIKLGDT----VCVIGIGPVGLMSVAGAN--HLGAGRIFAVGSRKH 202

Query: 83  SLELASENAAD 93
             ++A E  A 
Sbjct: 203 CCDIALEYGAT 213

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 37  LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--L 94
           +Y   + F D   KVV D GCG G L   A   GA +V+ +D  S+ L  A +      L
Sbjct: 56  IYQNPHIFKD---KVVLDVGCGTGILSMFAAKAGAKKVLGVD-QSEILYQAMDIIRLNKL 111

Query: 95  ELDIDFVQCDIRNLEWRVCSVGHVDTVV 122
           E  I  ++  I  +      V  VD ++
Sbjct: 112 EDTITLIKGKIEEVH---LPVEKVDVII 136

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 12/78 (15%)

Query: 52  VADFGCGCGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIRNL 108
           + D G G G +    A   G      ID+ S     A   A +L +   + F+  D    
Sbjct: 40  ILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98

Query: 109 EW-----RVCSVG---HV 118
                      VG     
Sbjct: 99  VANEKCDVAACVGATWIA 116

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
            K V D GC  G LGAA    G   V  I+   ++ E A E        +     +  ++
Sbjct: 33  WKEVLDIGCSSGALGAAIKENGTR-VSGIEAFPEAAEQAKEKL----DHVVLGDIETMDM 87

Query: 109 EWRVCSVGHVDTVVMN 124
            +        D V+  
Sbjct: 88  PY---EEEQFDCVIFG 100

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAAD 93
            G GT+G      A  LGA  V AIDI S+ L LA    A 
Sbjct: 167 IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM 207

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 48  SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIR 106
                 D G G G +     L    +V  +DI  D L  A     +      ++  C ++
Sbjct: 79  GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138

Query: 107 NLE 109
           +  
Sbjct: 139 DFT 141

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106
           V + GCG G   A      A +  A D   + L+LA  NA   +      + + +
Sbjct: 52  VLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHAD----VYEWNGK 101

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 22/137 (16%)

Query: 51  VVADFGCGCGTL-GAAATLLGAD-QVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
            V D  CG G      A+L+G + +V   DI   ++   ++   DL L   +  ++   +
Sbjct: 25  TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84

Query: 107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQA-------------VYSL 153
           N++  +     V  V+ N  +               ++  S+A             +Y  
Sbjct: 85  NMDKYID--CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142

Query: 154 HKTSTREHVKKAALRDF 170
             T   E   K  + +F
Sbjct: 143 GDTGFEE---KEKVLEF 156

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI-DSDSLELASENAA------DLELDI 98
            ++ K V + G G G +   A L GADQV+A D  D + L     N             +
Sbjct: 77  LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETV 136

Query: 99  DFVQCDIRNLEW 110
                 +    W
Sbjct: 137 KRASPKVVPYRW 148

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 52  VADFGCGCGTLGA--AATLLGADQVIAIDIDSDSLELASE 89
              +G G   L A  AA + GA  +IA+DI    LELA +
Sbjct: 194 FVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 233

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 22/130 (16%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELAS 88
             +  +ML  A +        ++ +  CG G    A A     D+V+A +I   S+  A 
Sbjct: 196 AAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQ 252

Query: 89  ENAADLELD-IDFVQCD-------------IRNLEWRVCSVGHVDTVVMNPPFGTRKKGV 134
            N A   +D +  ++                  L+         +T+ ++PP   R  G+
Sbjct: 253 YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP---R-SGL 308

Query: 135 DMDFLSMALK 144
           D +   M   
Sbjct: 309 DSETEKMVQA 318

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDI 98
           CG G +G      A   GA  ++  DID   L+ A E   ++    
Sbjct: 186 CGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHK 231

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 39  TAENSFGDVSNKVVADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASENAAD 93
             +      + K V   G G   L     A  LGA+ VI I    + L+LA E  AD
Sbjct: 186 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 45  GDVSNKVVADFGCGC-GTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELDI 98
           G +S K V   G G  G LG   A   GA  VI  +      ELA +  AD  ++ 
Sbjct: 164 GPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINP 219

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 51  VVADFGCG-CGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
            V   G G  G   A +A LLGA  VI  D++   L  A     +     D     
Sbjct: 188 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE---IADLSLDT 240

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 52  VADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
           V D G G G          GA     IDI S+ + +A+E  +     I F   DI   E
Sbjct: 59  VLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVS-GNNKIIFEANDILTKE 115

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 43  SFGDVSNKVVADFGCGCG--TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---D 97
            + D   K++ D GCG G  TL  A  L   +Q+I  D+ +  ++ A            +
Sbjct: 31  EYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90

Query: 98  IDFVQC---DIRNLEWRVCSVGHVDTVVMN 124
           + F      D + L         +D +   
Sbjct: 91  VSFKISSSDDFKFLGADSVDKQKIDMITAV 120

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQ 102
           D  +K+V D GCG G L   A   GA ++ A++  +    +  L   N  +L   I  + 
Sbjct: 48  DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN--NLTDRIVVIP 105

Query: 103 CDIRNLEWRVCSVGHVDTVV 122
             +  +         VD ++
Sbjct: 106 GKVEEVSLP----EQVDIII 121

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 14/80 (17%)

Query: 48  SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107
             K+V D G   G +     L   + V++ D++  +LE             + V+ D+  
Sbjct: 23  EMKIVLDLGTSTGVI--TEQLRKRNTVVSTDLNIRALESHRGG--------NLVRADL-- 70

Query: 108 LEWRVCSVGHVDTVVMNPPF 127
                 +   VD VV NPP+
Sbjct: 71  --LCSINQESVDVVVFNPPY 88

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 51  VVADFGCG-CGTLGA-AATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
            V   G G  G   A  A LLGA  VI  D + + L+L S+   +    ID     
Sbjct: 188 HVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE---TIDLRNSA 240

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS---DSLELASENAADLELDIDFVQ 102
           D  +K+V D GCG G L   A   GA ++ A++  +    +  L   N  +L   I  + 
Sbjct: 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN--NLTDRIVVIP 213

Query: 103 CDIRNLEWRVCSVGHVDTVV 122
             +  +         VD ++
Sbjct: 214 GKVEEVSLP----EQVDIII 229

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQC 103
              +K+V D GCG G L   A   GA  VI +D  S  +E+A E          I  ++ 
Sbjct: 36  LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVD-MSSIIEMAKELVELNGFSDKITLLRG 94

Query: 104 DIRNLEWRVCSVGHVDTVVMN 124
            + ++      V  + +  M 
Sbjct: 95  KLEDVHLPFPKVDIIISEWMG 115

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 6   LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA 65
           L   +  L      +  +E     P ++ + +  A     + S   + DFGCG G+L  +
Sbjct: 679 LNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDS 738

Query: 66  ATLLGAD--QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSV-------G 116
                     +I +DI    L  A++    L + ++   C++++      S+        
Sbjct: 739 LLDYPTSLQTIIGVDISPKGLARAAKM---LHVKLNKEACNVKSATLYDGSILEFDSRLH 795

Query: 117 HVDTVVMN 124
            VD     
Sbjct: 796 DVDIGTCL 803

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD------IDFVQ 102
           +  + D GCG G +       G   V  IDI+S+++ LA   A    L+       +F  
Sbjct: 31  DDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKV 89

Query: 103 CDIRNL 108
            +  +L
Sbjct: 90  ENASSL 95

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN 107
           N+ V D   G G +  A       +V+A D+  D L++A           +++VQ D   
Sbjct: 38  NEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96

Query: 108 L 108
           +
Sbjct: 97  M 97

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86
                I + ++    N        V+AD G G G    A    G   V A++      + 
Sbjct: 17  VPDIRIVNAII----NLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQ 71

Query: 87  ASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN 124
           A  +       +++      NL     S   VD V+  
Sbjct: 72  AVVHP-----QVEWFTGYAENLALPDKS---VDGVISI 101

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           G G LG         + A +VIA+D+D D L LA E  AD  +   
Sbjct: 179 GVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG 224

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDF 100
            +++ D G G G++     L G  + I I+  +D +E   +N     L    
Sbjct: 56  GELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRM 106

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG G     A       GA ++I +    D    A E       N  D +  I
Sbjct: 195 CAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPI 250

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 49  NKVVADFGCGCGTLGAAATLLGAD-QVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
           ++ + D G G G++             +  +I  +  E    NA +L + D   VQ   
Sbjct: 26  HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA 84

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 17/81 (20%)

Query: 52  VADFGCGCGTLGAA---ATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
             D G G G  GAA       G   +  ++I     +   E      L   I        
Sbjct: 86  GLDLGAGYG--GAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142

Query: 107 NLE---------WRVCSVGHV 118
            +          W   +  H 
Sbjct: 143 EIPCEDNSYDFIWSQDAFLHS 163

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG GC  L A     + GA ++IAIDI+ +    A         N  +L+  +
Sbjct: 199 CAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPV 254

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELD 97
           G G +G    A     GA +VI  +       LA E  AD  +D
Sbjct: 221 GGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVID 264

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELAS 88
             +  +M+  A           V D  CG G      AT   A  V+ ++     +E   
Sbjct: 268 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQ 325

Query: 89  ENAADLELD-IDFVQCD----IRNLEWRVCSVGHVDTVVMNPP 126
           +NA    L  + F   +    +    W        D V+++P 
Sbjct: 326 QNARLNGLQNVTFYHENLEEDVTKQPWA---KNGFDKVLLDPA 365

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 52  VADFGCGCGTLGAA--ATLLGADQVIAIDIDSDSLELASE-------NAADLELDI 98
            A FG G   L       + GA ++I +DI+ D    A E       N  D    I
Sbjct: 194 CAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPI 249

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQC 103
              +KVV D G G G L   A   GA +VI I+  S   + A +     +LD  +  ++ 
Sbjct: 64  LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE-CSSISDYAVKIVKANKLDHVVTIIKG 122

Query: 104 DIRNLEWRVCSVGHVDTVV 122
            +  +E     V  VD ++
Sbjct: 123 KVEEVE---LPVEKVDIII 138

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104
           + + GCG G    A    G D V A D   +    AS         + F Q D
Sbjct: 47  ILELGCGAGYQAEAMLAAGFD-VDATDGSPELAAEASRRLGRPVRTMLFHQLD 98

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 52  VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111
           V D G G G         G + V+ +D   + LE+A E         + V+    +L + 
Sbjct: 58  VLDLGGGTGKWSLFLQERGFE-VVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFP 111

Query: 112 VCSVGHVDTVVM 123
               G  + V+ 
Sbjct: 112 ---SGAFEAVLA 120

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 45  GDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQC 103
           G      V   G G  G +   A       V+        LE+A    AD+ L +D  + 
Sbjct: 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKE 224

Query: 104 DIRNLEWRVCSV--GHVDTVV 122
           +  ++  R+ S      +  +
Sbjct: 225 EESSIIERIRSAIGDLPNVTI 245

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 58  GCGTLG----AAATLLGADQVIAIDIDSDSLELASENAADLELDID 99
           G G LG        ++    VIA+D+  + L+LA    AD  +D  
Sbjct: 194 GVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR 239

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 4/41 (9%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAAD 93
            G G +G          GA  ++  D +   L  A   A  
Sbjct: 171 TGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADR 211

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 57  CGCGTLG----AAATLLGADQVIAIDIDSDSLELASENAAD 93
            G G +G      A L GA  VI     +    LA E  A 
Sbjct: 189 LGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.94
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.92
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.81
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.71
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.71
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.7
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.7
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.68
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.67
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.67
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.66
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.66
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.66
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.65
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.64
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.64
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.63
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.63
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.63
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.63
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.62
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.62
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.62
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.62
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.61
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.61
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.6
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.58
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.58
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.58
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.58
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.57
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.57
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.57
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.56
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.56
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.56
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.55
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.55
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.55
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.54
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.54
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.54
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.54
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.54
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.54
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.54
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.53
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.53
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.53
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.53
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.53
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.53
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.52
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.52
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.52
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.52
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.52
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.52
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.51
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.51
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.51
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.51
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.51
3lkd_A	542	Type I restriction-modification system methyltrans	99.51
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.51
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.51
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.5
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.5
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.5
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.5
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.5
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.49
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.49
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.49
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.49
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.49
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.49
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.48
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.48
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.47
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.47
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.46
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.46
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.46
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.46
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.46
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.46
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.45
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.45
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.45
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.45
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.45
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.45
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.45
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.45
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.45
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.44
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.44
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.44
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.44
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.44
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.44
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.44
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.44
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.44
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.44
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.43
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.43
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.43
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.43
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.43
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.43
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.43
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.43
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.43
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.43
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.43
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.43
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.43
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.42
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.42
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.42
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.42
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.42
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.41
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.41
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.41
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.41
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.41
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.4
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.4
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.4
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.4
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.4
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.4
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.4
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.4
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.4
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.39
3khk_A	544	Type I restriction-modification system methylation	99.39
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.39
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.39
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.39
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.39
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.39
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.38
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.38
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.38
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.38
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.38
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.38
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.38
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.37
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.36
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.36
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.36
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.36
3ocj_A	305	Putative exported protein; structural genomics, PS	99.36
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.36
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.36
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.36
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.36
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.35
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.35
3ufb_A	530	Type I restriction-modification system methyltran	99.35
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.35
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.35
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.34
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.34
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.34
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.34
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.34
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.34
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.34
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.34
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.33
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.33
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.33
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.33
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.33
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.33
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.33
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.33
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.33
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.33
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.32
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.32
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.32
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.31
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.31
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.31
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.31
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.31
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.31
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.31
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.3
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.3
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.3
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.3
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.3
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.3
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.29
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.29
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.28
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.28
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.28
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.28
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.28
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.28
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.28
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.27
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.26
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.25
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.25
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.25
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.24
2o07_A	304	Spermidine synthase; structural genomics, structur	99.23
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.23
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.23
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.23
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.22
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.21
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.21
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.2
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.19
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.19
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.18
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.18
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.18
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.17
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.14
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.14
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.13
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.13
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.12
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.12
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.1
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.1
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.09
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.08
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.08
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.07
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.07
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.05
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.05
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.04
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.02
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.01
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.0
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.99
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.98
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.98
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.98
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.96
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.94
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.9
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.86
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.84
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.83
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.77
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.77
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.76
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.75
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.73
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.71
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.7
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.68
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.67
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.65
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.63
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.6
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.59
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.58
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.52
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.51
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.43
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.37
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.35
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.32
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.31
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.3
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.3
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.29
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.23
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.17
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.15
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.14
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.03
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.98
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.85
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.85
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.85
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.82
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.8
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.79
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.79
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.59
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.59
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.32
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.15
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.04
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.71
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.67
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	96.43
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	96.3
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.2
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.02
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.96
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.61
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.46
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.42
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.77
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.73
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.38
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.23
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.12
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	93.96
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.75
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.53
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.41
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.36
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.13
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	92.94
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.9
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.85
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.84
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.8
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.78
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.76
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.69
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	92.67
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	92.61
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	92.6
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.57
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.55
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.54
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.39
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	92.34
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.34
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.26
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	92.1
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	92.08
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	92.05
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	91.93
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.74
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	91.72
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.69
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.6
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.51
3imf_A	257	Short chain dehydrogenase; structural genomics, in	91.48
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.43
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	91.31
1xkq_A	280	Short-chain reductase family member (5D234); parra	91.29
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	91.14
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.09
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	90.9
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	90.83
3rih_A	293	Short chain dehydrogenase or reductase; structural	90.82
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	90.75
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	90.62
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	90.51
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	90.44
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	90.4
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	90.39
1xhl_A	297	Short-chain dehydrogenase/reductase family member	90.37
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.34
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	90.28
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	90.22
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.21
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	90.19
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	90.1
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.1
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	90.09
1xq1_A	266	Putative tropinone reducatse; structural genomics,	90.07
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	90.0
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.86
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	89.8
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	89.71
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.68
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	89.64
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	89.62
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	89.6
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	89.6
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	89.5
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	89.42
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	89.38
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	89.33
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	89.32
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	89.32
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	89.3
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	89.28
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	89.27
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.22
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.21
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	89.17
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	89.13
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	88.98
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	88.93
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	88.86
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	88.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.66
3cxt_A	291	Dehydrogenase with different specificities; rossma	88.63
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	88.34
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	88.28
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	88.28
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.26
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	88.24
1spx_A	278	Short-chain reductase family member (5L265); paral	88.14
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	88.08
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	88.05
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	88.03
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	88.02
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	88.0
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	87.96
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	87.96
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	87.89
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	87.85
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	87.69
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.64
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	87.62
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	87.38
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	87.18
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.17
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	87.14
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.09
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	87.03
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	86.93
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	86.91
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	86.89
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	86.65
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	86.64
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	86.6
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	86.44
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	86.35
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.27
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	85.9
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.77
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.73
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	85.47
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	85.33
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	85.32
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	85.26
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	85.18
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	85.03
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	84.91
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	84.87
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	84.82
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	84.79
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.77
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	84.72
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	84.45
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	84.38
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	84.32
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	84.27
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	84.23
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	84.18
4dqx_A	277	Probable oxidoreductase protein; structural genomi	84.16
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	84.12
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	84.1
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	83.9
2g1p_A	278	DNA adenine methylase; DAM methylation, GATC recog	83.7
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	83.61
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	83.4
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	83.39
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	83.36
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	83.29
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	83.0
1yf3_A	259	DNA adenine methylase; T4DAM, methyltransferase, t	82.99
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	82.97
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	82.95
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	82.92
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	82.91
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	82.84
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	82.82
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	82.81
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	82.72
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	82.63
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	82.55
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.51
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	82.46
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	82.45
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	82.45
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	82.4
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	82.37
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	82.13
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	81.94
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	81.91
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	81.68
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	81.56
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	81.55

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.94  E-value=1.1e-24  Score=168.57  Aligned_cols=199  Identities=36%  Similarity=0.595  Sum_probs=159.6

Q ss_pred             CchhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCC
Q 027945            1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID   80 (216)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~   80 (216)
                      |++++++..+.....|.++....++|++++.....++..+... ...++.+|||+|||+|.++..+++.+..+|+|+|++
T Consensus         3 m~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~   81 (207)
T 1wy7_A            3 TRKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVD   81 (207)
T ss_dssp             -CCHHHHHHHHTSCCCSSCCGGGTCCCCCHHHHHHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC
T ss_pred             ccHHHHHHHHhhCcCCCCcccceeeecCchHHHHHHHHHHHHc-CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECC
Confidence            6788999999999999999999999999999999888766543 445778999999999999999998876689999999


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEe--cCcc
Q 027945           81 SDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH--KTST  158 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~  158 (216)
                      +.+++.++.+++.++.+++++++|+.+++  . .   ||+|++||||+....+....+++.+.+.. +.+|++|  ++.+
T Consensus        82 ~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~-~---~D~v~~~~p~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~~  154 (207)
T 1wy7_A           82 KEAVDVLIENLGEFKGKFKVFIGDVSEFN--S-R---VDIVIMNPPFGSQRKHADRPFLLKAFEIS-DVVYSIHLAKPEV  154 (207)
T ss_dssp             HHHHHHHHHHTGGGTTSEEEEESCGGGCC--C-C---CSEEEECCCCSSSSTTTTHHHHHHHHHHC-SEEEEEEECCHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECchHHcC--C-C---CCEEEEcCCCccccCCchHHHHHHHHHhc-CcEEEEEeCCcCC
Confidence            99999999999988878999999998863  1 4   99999999999987778888999998888 5888888  6666


Q ss_pred             HHHHHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEee
Q 027945          159 REHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPK  209 (216)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (216)
                      .+++...+ ...+ ...+.+....+..|..+.++......+.+.+|++.++
T Consensus       155 ~~~~~~~l-~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  203 (207)
T 1wy7_A          155 RRFIEKFS-WEHG-FVVTHRLTTKIEIPLQFFFHRKKLERITVDIYRFSKV  203 (207)
T ss_dssp             HHHHHHHH-HHTT-EEEEEEEEEEEEEC-----CCCCCEEEEEEEEEEEEC
T ss_pred             HHHHHHHH-HHCC-CeEEEEEEEecCCcccchhhhceeEEEEEEEEEEEEe
Confidence            66666555 2222 3445556666677777888777778899999998765

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.92  E-value=2.7e-23  Score=160.04  Aligned_cols=193  Identities=30%  Similarity=0.471  Sum_probs=140.2

Q ss_pred             chhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945            2 KLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~   81 (216)
                      ++++++..+.+++.|..+...+.+++++...+..++..+... ...++.+|||+|||+|.++..+++.+..+|+++|+++
T Consensus         6 ~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~   84 (200)
T 1ne2_A            6 IKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP   84 (200)
T ss_dssp             HHHHHHHHHHTSCCCC--------CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH
T ss_pred             cHHHHHHHHHhcCCCCccccceeecCCCHHHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCH
Confidence            467899999999999999999999999999999988776544 4557789999999999999999987766899999999


Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHH
Q 027945           82 DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREH  161 (216)
Q Consensus        82 ~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .+++.|+.++.    +++++++|+.+++   ..   ||+|++||||+....+....+++++.+.+ +.+|+++++.+..+
T Consensus        85 ~~~~~a~~~~~----~~~~~~~d~~~~~---~~---~D~v~~~~p~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~  153 (200)
T 1ne2_A           85 DAIETAKRNCG----GVNFMVADVSEIS---GK---YDTWIMNPPFGSVVKHSDRAFIDKAFETS-MWIYSIGNAKARDF  153 (200)
T ss_dssp             HHHHHHHHHCT----TSEEEECCGGGCC---CC---EEEEEECCCC-------CHHHHHHHHHHE-EEEEEEEEGGGHHH
T ss_pred             HHHHHHHHhcC----CCEEEECcHHHCC---CC---eeEEEECCCchhccCchhHHHHHHHHHhc-CcEEEEEcCchHHH
Confidence            99999999976    5899999998864   24   99999999999987777788999999988 57999999888777


Q ss_pred             HHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEee
Q 027945          162 VKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPK  209 (216)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (216)
                      +.... +..+  ..+.+....+..+..+.++......+.+.++++.+.
T Consensus       154 ~~~~~-~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  198 (200)
T 1ne2_A          154 LRREF-SARG--DVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRNH  198 (200)
T ss_dssp             HHHHH-HHHE--EEEEEEEEEEECCSCCC------CEEEEEEEEEEES
T ss_pred             HHHHH-HHCC--CEEEEEEEecCCCccccccccceeEEEEEEEEEEec
Confidence            76655 3222  344455555666666666666667788888888754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.81  E-value=3.8e-18  Score=130.05  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=111.4

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFV  101 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~  101 (216)
                      ...+|++..+...++..+... ...++.+|||+|||+|.+++.+++.+..+|+++|+|+.+++.|+.|++.++. +++++
T Consensus        20 ~~~rp~~~~~~~~l~~~l~~~-~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~   98 (189)
T 3p9n_A           20 RGTRPTTDRVRESLFNIVTAR-RDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLR   98 (189)
T ss_dssp             CCC---CHHHHHHHHHHHHHH-SCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred             CCCccCcHHHHHHHHHHHHhc-cCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence            445778888888888777654 2357789999999999999988887777999999999999999999999887 79999


Q ss_pred             EcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEEEE
Q 027945          102 QCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCEL  181 (216)
Q Consensus       102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (216)
                      ++|+.+..... ..++||+|++||||+... ......++.+.+                      .+.|+ ++|.++.+.
T Consensus        99 ~~d~~~~~~~~-~~~~fD~i~~~~p~~~~~-~~~~~~l~~~~~----------------------~~~L~-pgG~l~~~~  153 (189)
T 3p9n_A           99 RGAVAAVVAAG-TTSPVDLVLADPPYNVDS-ADVDAILAALGT----------------------NGWTR-EGTVAVVER  153 (189)
T ss_dssp             ESCHHHHHHHC-CSSCCSEEEECCCTTSCH-HHHHHHHHHHHH----------------------SSSCC-TTCEEEEEE
T ss_pred             EccHHHHHhhc-cCCCccEEEECCCCCcch-hhHHHHHHHHHh----------------------cCccC-CCeEEEEEe
Confidence            99998875432 122499999999988541 111222333222                      01444 666666665


Q ss_pred             ee-----cCCccccc-cceeeeeEEEEEEEEE
Q 027945          182 RY-----DVPQLYKF-HKKKEVDIAVDLWRFV  207 (216)
Q Consensus       182 ~~-----~~~~~~~~-~~~~~~~~~~~~~~~~  207 (216)
                      ..     ..+..|.. ..+.++...+.+|+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~  185 (189)
T 3p9n_A          154 ATTCAPLTWPEGWRRWPQRVYGDTRLELAERL  185 (189)
T ss_dssp             ETTSCCCCCCTTEEECCCEEETTEEEEEEEEC
T ss_pred             cCCCCCccCCCceEEEEEcccCcEEEEEeccc
Confidence            42     23444533 4567788888888764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.71  E-value=2.2e-16  Score=121.57  Aligned_cols=99  Identities=19%  Similarity=0.256  Sum_probs=77.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEE
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQ  102 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~  102 (216)
                      .|++..+...++..+...   .++.+|||+|||+|.+++.+++.+..+|+++|+|+.+++.|+.|++.++.   ++++++
T Consensus        34 rp~~~~~~~~l~~~l~~~---~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~  110 (201)
T 2ift_A           34 RPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN  110 (201)
T ss_dssp             ----CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC
T ss_pred             CcCHHHHHHHHHHHHHHh---cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEE
Confidence            556666666666655432   25679999999999999998877777999999999999999999998886   799999


Q ss_pred             cccccccccccCCCc-ccEEEEcCCCC
Q 027945          103 CDIRNLEWRVCSVGH-VDTVVMNPPFG  128 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~-fD~v~~npp~~  128 (216)
                      +|+.+..... ..++ ||+|++||||+
T Consensus       111 ~d~~~~~~~~-~~~~~fD~I~~~~~~~  136 (201)
T 2ift_A          111 QSSLDFLKQP-QNQPHFDVVFLDPPFH  136 (201)
T ss_dssp             SCHHHHTTSC-CSSCCEEEEEECCCSS
T ss_pred             CCHHHHHHhh-ccCCCCCEEEECCCCC
Confidence            9998764432 2346 99999999986

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.71  E-value=2.9e-16  Score=121.06  Aligned_cols=112  Identities=18%  Similarity=0.204  Sum_probs=83.6

Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEc
Q 027945           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC  103 (216)
Q Consensus        25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~  103 (216)
                      ..|+...+...++..+...   .++.+|||+|||+|.+++.+++.+..+|+++|+++.+++.|+.|++.++. +++++++
T Consensus        34 ~rp~~~~~~~~l~~~l~~~---~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~  110 (202)
T 2fpo_A           34 LRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS  110 (202)
T ss_dssp             ----CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCHHHHHHHHHHHHHhh---cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            4667777777776665432   25679999999999999998877767999999999999999999999887 8999999


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHh
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALK  144 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~  144 (216)
                      |+.+.....  .++||+|++||||+.   ......++.+.+
T Consensus       111 D~~~~~~~~--~~~fD~V~~~~p~~~---~~~~~~l~~l~~  146 (202)
T 2fpo_A          111 NAMSFLAQK--GTPHNIVFVDPPFRR---GLLEETINLLED  146 (202)
T ss_dssp             CHHHHHSSC--CCCEEEEEECCSSST---TTHHHHHHHHHH
T ss_pred             CHHHHHhhc--CCCCCEEEECCCCCC---CcHHHHHHHHHh
Confidence            998743321  124999999999873   233345555443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.70  E-value=1.6e-16  Score=126.95  Aligned_cols=118  Identities=14%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ++.+|||+|||+|.+++.+++++..+|+|+|+++.+++.|+.|+..++.  +++++++|+.+..... ..++||+|++||
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~-~~~~fD~Ii~np  127 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI-PKERADIVTCNP  127 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS-CTTCEEEEEECC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh-ccCCccEEEECC
Confidence            6789999999999999999987666999999999999999999999887  5999999999876422 123499999999


Q ss_pred             CCCCC-CCC-----------------CCHHHHHHHHhhcC--CcEEEEecCccHHHHHHHH
Q 027945          126 PFGTR-KKG-----------------VDMDFLSMALKVAS--QAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       126 p~~~~-~~~-----------------~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~  166 (216)
                      ||... ..+                 ....+++.+.+.++  +.+++++.+.....+...+
T Consensus       128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l  188 (259)
T 3lpm_A          128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIM  188 (259)
T ss_dssp             CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHH
T ss_pred             CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHH
Confidence            99654 111                 11346777777664  4555555566555555544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.70  E-value=4.1e-16  Score=117.95  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=81.1

Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEE
Q 027945           24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFV  101 (216)
Q Consensus        24 ~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~  101 (216)
                      ...|++..+...++..+..   ..++.+|||+|||+|.+++.+++.+..+|+++|+++.+++.|+.+++.++.  +++++
T Consensus        23 ~~rp~~~~~~~~~~~~l~~---~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   99 (187)
T 2fhp_A           23 NTRPTTDKVKESIFNMIGP---YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVR   99 (187)
T ss_dssp             SSCCCCHHHHHHHHHHHCS---CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CcCcCHHHHHHHHHHHHHh---hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEE
Confidence            4567777777776665421   246789999999999999999887767999999999999999999998886  69999


Q ss_pred             Ecccccccccc-cCCCcccEEEEcCCCC
Q 027945          102 QCDIRNLEWRV-CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       102 ~~d~~~~~~~~-~~~~~fD~v~~npp~~  128 (216)
                      ++|+.+..... ...++||+|++||||+
T Consensus       100 ~~d~~~~~~~~~~~~~~fD~i~~~~~~~  127 (187)
T 2fhp_A          100 KMDANRALEQFYEEKLQFDLVLLDPPYA  127 (187)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred             ECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence            99998854321 0122499999999987

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.68  E-value=6e-16  Score=125.43  Aligned_cols=78  Identities=24%  Similarity=0.385  Sum_probs=68.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcc---cEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHV---DTVV  122 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~f---D~v~  122 (216)
                      ++.+|||+|||+|.+++.+++.+..+|+++|+|+.+++.|+.|++.++.  +++++++|+.+....  .   |   |+|+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~--~---f~~~D~Iv  197 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE--K---FASIEMIL  197 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG--G---TTTCCEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhccc--c---cCCCCEEE
Confidence            5679999999999999999976556999999999999999999999888  499999999875432  4   8   9999


Q ss_pred             EcCCCCCC
Q 027945          123 MNPPFGTR  130 (216)
Q Consensus       123 ~npp~~~~  130 (216)
                      +||||...
T Consensus       198 snPPyi~~  205 (284)
T 1nv8_A          198 SNPPYVKS  205 (284)
T ss_dssp             ECCCCBCG
T ss_pred             EcCCCCCc
Confidence            99999865

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.67  E-value=1.6e-15  Score=112.90  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=81.1

Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027945           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD  104 (216)
Q Consensus        25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d  104 (216)
                      ..|++..+...++..+...+  .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|+.+++.++.+++++++|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d   96 (171)
T 1ws6_A           20 ARPSPVRLRKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALP   96 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSC
T ss_pred             CCCCHHHHHHHHHHHHHhhc--cCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEecc
Confidence            57777777777777664421  2567999999999999999999876 59999999999999999999887789999999


Q ss_pred             cccccccc-cCCCcccEEEEcCCCC
Q 027945          105 IRNLEWRV-CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       105 ~~~~~~~~-~~~~~fD~v~~npp~~  128 (216)
                      +.+..... ...++||+|++||||+
T Consensus        97 ~~~~~~~~~~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A           97 VEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             HHHHHHhhhccCCceEEEEECCCCc
Confidence            98743221 1112499999999987

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.67  E-value=6.6e-15  Score=123.64  Aligned_cols=121  Identities=28%  Similarity=0.329  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL--DIDFVQC  103 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~  103 (216)
                      |..+.++..++...     ..++.+|||+|||+|.+++.++..+. .+|+|+|+|+.+++.|+.|++.+|+  +++++++
T Consensus       201 ~l~~~la~~l~~~~-----~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~  275 (373)
T 3tm4_A          201 HLKASIANAMIELA-----ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQG  275 (373)
T ss_dssp             CCCHHHHHHHHHHH-----TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEEC
T ss_pred             CccHHHHHHHHHhh-----cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            34566666666555     24678999999999999999998754 4899999999999999999999988  7999999


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCCCCC--C----CHHHHHHHHhhcC-CcEEEEec
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKG--V----DMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~--~----~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      |+.+.+.....   ||+|++||||+.....  .    +..+++.+.+..+ ..+++++.
T Consensus       276 D~~~~~~~~~~---fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~~  331 (373)
T 3tm4_A          276 DATQLSQYVDS---VDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITTE  331 (373)
T ss_dssp             CGGGGGGTCSC---EEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEESC
T ss_pred             ChhhCCcccCC---cCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            99998765445   9999999999876321  1    2345566666444 34555443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.66  E-value=1.3e-15  Score=130.23  Aligned_cols=128  Identities=16%  Similarity=0.216  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      ++.+......++..++..+...++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|+.|++.++. +++++++|
T Consensus       264 ~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d  342 (433)
T 1uwv_A          264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN  342 (433)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             cccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECC
Confidence            34456667777777776666567789999999999999999987 55999999999999999999999988 79999999


Q ss_pred             cccccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945          105 IRNLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTSTR  159 (216)
Q Consensus       105 ~~~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  159 (216)
                      +.+..... ...++||+|++|||+...     ...++.+....+ ..+|++|++.+.
T Consensus       343 ~~~~l~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~~~~p~~ivyvsc~p~tl  394 (433)
T 1uwv_A          343 LEEDVTKQPWAKNGFDKVLLDPARAGA-----AGVMQQIIKLEPIRIVYVSCNPATL  394 (433)
T ss_dssp             TTSCCSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHHHHCCSEEEEEESCHHHH
T ss_pred             HHHHhhhhhhhcCCCCEEEECCCCccH-----HHHHHHHHhcCCCeEEEEECChHHH
Confidence            98843210 011249999999997643     245555555444 588999998873

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.66  E-value=1.7e-15  Score=113.80  Aligned_cols=99  Identities=15%  Similarity=0.269  Sum_probs=74.3

Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEE
Q 027945           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQ  102 (216)
Q Consensus        25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~  102 (216)
                      ..|++..+...++..+..   ..++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|+.+++.++.  ++++++
T Consensus        11 ~rp~~~~~~~~~~~~l~~---~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (177)
T 2esr_A           11 TRPTSDKVRGAIFNMIGP---YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK   87 (177)
T ss_dssp             -------CHHHHHHHHCS---CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC
T ss_pred             CCcCHHHHHHHHHHHHHh---hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            455665555555554421   346789999999999999999987767999999999999999999998887  599999


Q ss_pred             cccccccccccCCCcccEEEEcCCCC
Q 027945          103 CDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      +|+.+.....  .++||+|++||||+
T Consensus        88 ~d~~~~~~~~--~~~fD~i~~~~~~~  111 (177)
T 2esr_A           88 MEAERAIDCL--TGRFDLVFLDPPYA  111 (177)
T ss_dssp             SCHHHHHHHB--CSCEEEEEECCSSH
T ss_pred             CcHHHhHHhh--cCCCCEEEECCCCC
Confidence            9998843321  12399999999975

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.66  E-value=2.7e-15  Score=126.26  Aligned_cols=121  Identities=20%  Similarity=0.297  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhhc--CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           33 ASRMLYTAENSF--GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        33 ~~~~l~~~~~~~--~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      ...++..+....  ...++.+|||+|||+|.+++.+++.+. +|+++|+|+.+++.|+.|+..++.+++++++|+.+...
T Consensus       216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~  294 (381)
T 3dmg_A          216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT  294 (381)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC
T ss_pred             HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc
Confidence            344444444332  234678999999999999999999765 99999999999999999999998889999999998766


Q ss_pred             cccCCCcccEEEEcCCCCCCCC---CCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945          111 RVCSVGHVDTVVMNPPFGTRKK---GVDMDFLSMALKVAS--QAVYSLHKTS  157 (216)
Q Consensus       111 ~~~~~~~fD~v~~npp~~~~~~---~~~~~~l~~~~~~~~--~~~~~~~~~~  157 (216)
                      ....   ||+|++||||+....   .....+++++.+.++  +.+++++++.
T Consensus       295 ~~~~---fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          295 EEAR---FDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TTCC---EEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             cCCC---eEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            5334   999999999997422   223467777777764  4666666654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.65  E-value=1.7e-15  Score=122.10  Aligned_cols=96  Identities=23%  Similarity=0.261  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~  107 (216)
                      ......++..++..+. .++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.|+.|++.++. +++++++|+.+
T Consensus        92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~  170 (276)
T 2b3t_A           92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS  170 (276)
T ss_dssp             CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred             CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh
Confidence            3345556666655544 45679999999999999999954 556999999999999999999998887 79999999987


Q ss_pred             ccccccCCCcccEEEEcCCCCCC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ... ...   ||+|++||||...
T Consensus       171 ~~~-~~~---fD~Iv~npPy~~~  189 (276)
T 2b3t_A          171 ALA-GQQ---FAMIVSNPPYIDE  189 (276)
T ss_dssp             GGT-TCC---EEEEEECCCCBCT
T ss_pred             hcc-cCC---ccEEEECCCCCCc
Confidence            532 224   9999999999865

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.64  E-value=3e-15  Score=125.59  Aligned_cols=127  Identities=20%  Similarity=0.274  Sum_probs=95.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      |.+.+.....+...+..... ..+.+|||+|||+|.+++.+++ +..+|+++|+++.+++.|+.|++.+++ +++++.+|
T Consensus       192 ~Q~n~~~~~~l~~~~~~~~~-~~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d  269 (369)
T 3bt7_A          192 TQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA  269 (369)
T ss_dssp             CCSBHHHHHHHHHHHHHHTT-TCCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             ecCCHHHHHHHHHHHHHHhh-cCCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECC
Confidence            33455566667777666543 3357899999999999999998 456999999999999999999999988 89999999


Q ss_pred             cccccccccCC-------------CcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccH
Q 027945          105 IRNLEWRVCSV-------------GHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR  159 (216)
Q Consensus       105 ~~~~~~~~~~~-------------~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.+........             .+||+|++|||+.    +.....++. ++..+..+|++|++.+.
T Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~----g~~~~~~~~-l~~~g~ivyvsc~p~t~  332 (369)
T 3bt7_A          270 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS----GLDSETEKM-VQAYPRILYISCNPETL  332 (369)
T ss_dssp             SHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT----CCCHHHHHH-HTTSSEEEEEESCHHHH
T ss_pred             HHHHHHHHhhccccccccccccccCCCCEEEECcCcc----ccHHHHHHH-HhCCCEEEEEECCHHHH
Confidence            98864322110             2499999999964    344444444 34445699999998873

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.64  E-value=8.2e-15  Score=114.59  Aligned_cols=84  Identities=19%  Similarity=0.275  Sum_probs=68.2

Q ss_pred             CCCCCEEEEecCC-cchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           46 DVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        46 ~~~~~~vLD~g~G-~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ..++.+|||+||| +|.+++.+++....+|+++|+++.+++.|+.|+..++.+++++++|+.......  .++||+|++|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~I~~n  130 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVV--EGTFDVIFSA  130 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTC--CSCEEEEEEC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcc--cCceeEEEEC
Confidence            3477899999999 999999999874459999999999999999999998888999999975432111  1249999999


Q ss_pred             CCCCCCC
Q 027945          125 PPFGTRK  131 (216)
Q Consensus       125 pp~~~~~  131 (216)
                      |||+...
T Consensus       131 pp~~~~~  137 (230)
T 3evz_A          131 PPYYDKP  137 (230)
T ss_dssp             CCCC---
T ss_pred             CCCcCCc
Confidence            9998753

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.63  E-value=5.8e-15  Score=125.84  Aligned_cols=120  Identities=22%  Similarity=0.298  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~  105 (216)
                      |.++......++..+..   ..++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|+.|++.++.+++++++|+
T Consensus       271 ~q~n~~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~  346 (425)
T 2jjq_A          271 FQTNSYQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASD  346 (425)
T ss_dssp             CCSBHHHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred             cccCHHHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh
Confidence            33445555666665554   2467899999999999999999864 5999999999999999999998887799999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST  158 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  158 (216)
                      .+....  .   ||+|++|||+    .+....+++.+....+ +.+|++|+|.+
T Consensus       347 ~~~~~~--~---fD~Vv~dPPr----~g~~~~~~~~l~~l~p~givyvsc~p~t  391 (425)
T 2jjq_A          347 REVSVK--G---FDTVIVDPPR----AGLHPRLVKRLNREKPGVIVYVSCNPET  391 (425)
T ss_dssp             TTCCCT--T---CSEEEECCCT----TCSCHHHHHHHHHHCCSEEEEEESCHHH
T ss_pred             HHcCcc--C---CCEEEEcCCc----cchHHHHHHHHHhcCCCcEEEEECChHH
Confidence            987543  4   9999999995    3444556666655544 68999999876

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.63  E-value=8.4e-15  Score=123.50  Aligned_cols=132  Identities=17%  Similarity=0.191  Sum_probs=92.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccccccc-CCCcccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVC-SVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~-~~~~fD~v~  122 (216)
                      .++.+|||+|||+|.+++.+++.++.+|+++|+++.+++.|++|++.+++   +++++++|+.+...... ...+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            46789999999999999999997777999999999999999999999987   68999999988543211 122499999


Q ss_pred             EcCCCCCCCCC---CCH----HHHHHHHhhcC--CcEEEEecCcc--HHHHHHHHhhhcCCccceEE
Q 027945          123 MNPPFGTRKKG---VDM----DFLSMALKVAS--QAVYSLHKTST--REHVKKAALRDFNASSAEVL  178 (216)
Q Consensus       123 ~npp~~~~~~~---~~~----~~l~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~  178 (216)
                      +|||+.....+   ...    .++..+.+.++  +.+++++.+.+  ++.+...+.......+...+
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~  357 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL  357 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEE
Confidence            99999643111   111    23445555543  46777776654  45555555444443444433

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.63  E-value=1.9e-14  Score=107.78  Aligned_cols=123  Identities=19%  Similarity=0.253  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      +|......++..+...  ..++.+|||+|||+|.++..+++.+  +|+|+|+|+.+++.        ..+++++++|+.+
T Consensus         5 ~P~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~   72 (170)
T 3q87_B            5 EPGEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLC   72 (170)
T ss_dssp             CCCHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTT
T ss_pred             CcCccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhh
Confidence            4444555555553221  2456799999999999999999876  99999999999988        1268999999987


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCC-------CCHHHHHHHHhhcC-CcEEEEecC-ccHHHHHHHH
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKG-------VDMDFLSMALKVAS-QAVYSLHKT-STREHVKKAA  166 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~-------~~~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~  166 (216)
                      .... ..   ||+|++||||+.....       .....++++.+.++ +.+++++.. ...+.+....
T Consensus        73 ~~~~-~~---fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpgG~l~~~~~~~~~~~~l~~~l  136 (170)
T 3q87_B           73 SINQ-ES---VDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIEANRPKEVLARL  136 (170)
T ss_dssp             TBCG-GG---CSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHCCSSEEEEEEEGGGCHHHHHHHH
T ss_pred             hccc-CC---CCEEEECCCCccCCccccccCCcchHHHHHHHHhhCCCCEEEEEEecCCCHHHHHHHH
Confidence            4332 34   9999999999875333       22445666655544 455554433 3445454444

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.63  E-value=6.1e-16  Score=119.23  Aligned_cols=103  Identities=21%  Similarity=0.224  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 027945           28 TGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~  105 (216)
                      ++......++..++..+.. .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|+.++..++.+++++++|+
T Consensus         9 ~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~   88 (215)
T 4dzr_A            9 IPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADG   88 (215)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHH
T ss_pred             CCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcch
Confidence            3444556666666665554 577899999999999999999874 44999999999999999999988777788999999


Q ss_pred             ccccccc-cCCCcccEEEEcCCCCCC
Q 027945          106 RNLEWRV-CSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       106 ~~~~~~~-~~~~~fD~v~~npp~~~~  130 (216)
                      .+..... ...++||+|++||||+..
T Consensus        89 ~~~~~~~~~~~~~fD~i~~npp~~~~  114 (215)
T 4dzr_A           89 IEWLIERAERGRPWHAIVSNPPYIPT  114 (215)
T ss_dssp             HHHHHHHHHTTCCBSEEEECCCCCC-
T ss_pred             HhhhhhhhhccCcccEEEECCCCCCC
Confidence            8833320 011239999999999765

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.62  E-value=1.6e-14  Score=122.25  Aligned_cols=112  Identities=23%  Similarity=0.296  Sum_probs=88.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccccccc-CCCcccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVC-SVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~-~~~~fD~v~  122 (216)
                      .++.+|||+|||+|.+++.+++.+..+|+++|+++.+++.|+.|++.+++   +++++++|+.+...... ...+||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            36789999999999999999998777999999999999999999999987   79999999988654310 112499999


Q ss_pred             EcCCCCCCCC-------CCCHHHHHHHHhhcC--CcEEEEecCcc
Q 027945          123 MNPPFGTRKK-------GVDMDFLSMALKVAS--QAVYSLHKTST  158 (216)
Q Consensus       123 ~npp~~~~~~-------~~~~~~l~~~~~~~~--~~~~~~~~~~~  158 (216)
                      +|||+.....       ......+..+.+.++  +.++++|.+.+
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            9999865422       223466777777654  46777777654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.62  E-value=5.6e-15  Score=123.17  Aligned_cols=115  Identities=32%  Similarity=0.321  Sum_probs=87.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEE
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQ  102 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~  102 (216)
                      .|..+.++..++...    ...++.+|||+|||+|.+++.++..+  ..+++|+|+|+.+++.|+.|++.+|+ ++++.+
T Consensus       185 a~l~~~la~~l~~~~----~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~  260 (354)
T 3tma_A          185 GSLTPVLAQALLRLA----DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLR  260 (354)
T ss_dssp             CSCCHHHHHHHHHHT----TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCcCHHHHHHHHHHh----CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEe
Confidence            444455555555443    34567899999999999999999853  46999999999999999999999988 799999


Q ss_pred             cccccccccccCCCcccEEEEcCCCCCCCCCC------CHHHHHHHHhhcC
Q 027945          103 CDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV------DMDFLSMALKVAS  147 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~------~~~~l~~~~~~~~  147 (216)
                      +|+.+++.....   ||+|++||||+......      +..+++.+.+..+
T Consensus       261 ~D~~~~~~~~~~---~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk  308 (354)
T 3tma_A          261 ADARHLPRFFPE---VDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP  308 (354)
T ss_dssp             CCGGGGGGTCCC---CSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC
T ss_pred             CChhhCccccCC---CCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC
Confidence            999998765545   99999999998763211      2456666666653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.62  E-value=1.8e-14  Score=120.97  Aligned_cols=144  Identities=21%  Similarity=0.272  Sum_probs=105.8

Q ss_pred             HHHhccCCCCCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHH
Q 027945            8 SVLGDLEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLE   85 (216)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~   85 (216)
                      .+.+.+..+..+...+.+ +++++.....++....  ....++.+|||+| |+|.+++.+++.+. .+|+++|+++.+++
T Consensus       133 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~  209 (373)
T 2qm3_A          133 QFREIVKDRPEPLHEFDQAYVTPETTVARVILMHT--RGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTK  209 (373)
T ss_dssp             HHHHHHTTCCCCCGGGTCCCBCHHHHHHHHHHHHH--TTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHH
T ss_pred             HHHHHHhcCCccchhcCCeecCHHHHHHHHHHHhh--cCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            344444556556566666 7777777777665422  2344678999999 99999999998764 79999999999999


Q ss_pred             HHHHHHHhcCC-CeEEEEccccc-ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-Cc--EEEEecC--cc
Q 027945           86 LASENAADLEL-DIDFVQCDIRN-LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QA--VYSLHKT--ST  158 (216)
Q Consensus        86 ~a~~~~~~~~~-~~~~~~~d~~~-~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~--~~~~~~~--~~  158 (216)
                      .|++|++.+|. +++++++|+.+ ++...  .++||+|++||||+...   ...+++++.+.++ ++  +++.+..  .+
T Consensus       210 ~a~~~~~~~g~~~v~~~~~D~~~~l~~~~--~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~  284 (373)
T 2qm3_A          210 FIEKAANEIGYEDIEIFTFDLRKPLPDYA--LHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGITRRESS  284 (373)
T ss_dssp             HHHHHHHHHTCCCEEEECCCTTSCCCTTT--SSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEECTTTCC
T ss_pred             HHHHHHHHcCCCCEEEEEChhhhhchhhc--cCCccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEecCcCC
Confidence            99999999888 89999999988 43211  12499999999997652   4678888888775 23  2444444  55


Q ss_pred             H
Q 027945          159 R  159 (216)
Q Consensus       159 ~  159 (216)
                      .
T Consensus       285 ~  285 (373)
T 2qm3_A          285 L  285 (373)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=6.9e-15  Score=117.65  Aligned_cols=121  Identities=19%  Similarity=0.277  Sum_probs=86.0

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHh---cCC--CeEEEEcccccccccc----cCC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAAD---LEL--DIDFVQCDIRNLEWRV----CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~---~~~--~~~~~~~d~~~~~~~~----~~~  115 (216)
                      ..++.+|||+|||+|.+++.++++. ..+|+++|+++.+++.|+.|+..   +++  +++++++|+.+.....    -..
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            4466799999999999999999874 46999999999999999999998   777  5999999999873210    012


Q ss_pred             CcccEEEEcCCCCCCC----------------CCCCHHHHHHHHhhcC--CcEEEEecCccHHHHHHHH
Q 027945          116 GHVDTVVMNPPFGTRK----------------KGVDMDFLSMALKVAS--QAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       116 ~~fD~v~~npp~~~~~----------------~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~  166 (216)
                      ++||+|++||||....                ......+++.+.+.++  +.+++++.+.....+...+
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l  182 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAAC  182 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHH
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHH
Confidence            3499999999998652                1123456777666654  3555555555444444444

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.61  E-value=2.4e-15  Score=121.06  Aligned_cols=91  Identities=24%  Similarity=0.343  Sum_probs=79.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.+++.++++|.++|+++|+||.+++.+++|++.|++  +++++++|+.++.... .   ||.|++|
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~-~---~D~Vi~~  199 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGEN-I---ADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCS-C---EEEEEEC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcccc-C---CCEEEEC
Confidence            47889999999999999999998877999999999999999999999998  5999999999876543 4   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ||+...      .++..+++..+
T Consensus       200 ~p~~~~------~~l~~a~~~lk  216 (278)
T 3k6r_A          200 YVVRTH------EFIPKALSIAK  216 (278)
T ss_dssp             CCSSGG------GGHHHHHHHEE
T ss_pred             CCCcHH------HHHHHHHHHcC
Confidence            996543      57777777765

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.61  E-value=1.4e-14  Score=120.34  Aligned_cols=124  Identities=16%  Similarity=0.157  Sum_probs=91.2

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhc-CCCCCCEEEEecCCcchHHHHHHHcCC------CeEEEEeCCHHHHHHHHHHH
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSF-GDVSNKVVADFGCGCGTLGAAATLLGA------DQVIAIDIDSDSLELASENA   91 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~-~~~~~~~vLD~g~G~G~~~~~l~~~~~------~~v~~~D~~~~~~~~a~~~~   91 (216)
                      .....+++.||..+...+.. ++..+ ...++.+|||+|||+|.+++.+++...      .+++|+|+++.+++.|+.|+
T Consensus       101 ~~~~~g~~~TP~~i~~~~~~-ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~  179 (344)
T 2f8l_A          101 HGIQVNHQMTPDSIGFIVAY-LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA  179 (344)
T ss_dssp             SSCCGGGCCCCHHHHHHHHH-HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH
T ss_pred             cccccCcCCChHHHHHHHHH-HHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHH
Confidence            44566788899876654433 32222 233567999999999999999986531      58999999999999999999


Q ss_pred             HhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC----------------CCHHHHHHHHhhcC
Q 027945           92 ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG----------------VDMDFLSMALKVAS  147 (216)
Q Consensus        92 ~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~----------------~~~~~l~~~~~~~~  147 (216)
                      ...+.++.++++|+......    ++||+|++||||+.....                ....++..+.+.++
T Consensus       180 ~~~g~~~~i~~~D~l~~~~~----~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk  247 (344)
T 2f8l_A          180 DLQRQKMTLLHQDGLANLLV----DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK  247 (344)
T ss_dssp             HHHTCCCEEEESCTTSCCCC----CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE
T ss_pred             HhCCCCceEEECCCCCcccc----CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhC
Confidence            88887889999998874432    239999999998653211                11257888887764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.60  E-value=8.2e-14  Score=109.69  Aligned_cols=96  Identities=33%  Similarity=0.426  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      .++..+...++..+...   .++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|+.+++.+++  +++++++|
T Consensus        60 ~~~~~~~~~l~~~~~~~---~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  135 (241)
T 3gdh_A           60 VTPEKIAEHIAGRVSQS---FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGD  135 (241)
T ss_dssp             CCCHHHHHHHHHHHHHH---SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             cCHHHHHHHHHHHhhhc---cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECC
Confidence            35555666666665443   367899999999999999999976 5999999999999999999999887  79999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +.+.+... .   ||+|++||||+..
T Consensus       136 ~~~~~~~~-~---~D~v~~~~~~~~~  157 (241)
T 3gdh_A          136 FLLLASFL-K---ADVVFLSPPWGGP  157 (241)
T ss_dssp             HHHHGGGC-C---CSEEEECCCCSSG
T ss_pred             hHHhcccC-C---CCEEEECCCcCCc
Confidence            99876332 5   9999999999875

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.58  E-value=2.4e-13  Score=104.78  Aligned_cols=106  Identities=15%  Similarity=0.120  Sum_probs=82.0

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      .+...+...++..+    ...++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|+++++.++.  +++++++|
T Consensus        38 ~~~~~~~~~~l~~l----~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d  112 (204)
T 3njr_A           38 ITKSPMRALTLAAL----APRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT  112 (204)
T ss_dssp             CCCHHHHHHHHHHH----CCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCcHHHHHHHHHhc----CCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCc
Confidence            34455555544433    4457789999999999999999987 55999999999999999999998887  59999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+.......   ||+|++++..       ....++++.+.++
T Consensus       113 ~~~~~~~~~~---~D~v~~~~~~-------~~~~l~~~~~~Lk  145 (204)
T 3njr_A          113 APAALADLPL---PEAVFIGGGG-------SQALYDRLWEWLA  145 (204)
T ss_dssp             TTGGGTTSCC---CSEEEECSCC-------CHHHHHHHHHHSC
T ss_pred             hhhhcccCCC---CCEEEECCcc-------cHHHHHHHHHhcC
Confidence            9885443334   9999998743       2236777777654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.58  E-value=1.5e-14  Score=121.50  Aligned_cols=111  Identities=16%  Similarity=0.259  Sum_probs=83.3

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccccCCCc
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      .+...++.+|||+|||+|.+++.+++.+ ..+|+++|+|+.+++.|+.|++.++.    +++++.+|+.+.... ..   
T Consensus       217 ~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~-~~---  292 (375)
T 4dcm_A          217 HLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP-FR---  292 (375)
T ss_dssp             TCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT-TC---
T ss_pred             hCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC-CC---
Confidence            3344556899999999999999999874 56999999999999999999999875    488899999874332 24   


Q ss_pred             ccEEEEcCCCCCCC---CCCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945          118 VDTVVMNPPFGTRK---KGVDMDFLSMALKVAS--QAVYSLHKTS  157 (216)
Q Consensus       118 fD~v~~npp~~~~~---~~~~~~~l~~~~~~~~--~~~~~~~~~~  157 (216)
                      ||+|++||||+...   ......+++++.+.++  +.++++++..
T Consensus       293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            99999999998642   2223356777777654  4556655543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.58  E-value=1.2e-14  Score=115.42  Aligned_cols=102  Identities=28%  Similarity=0.345  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhc---CC--C---
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADL---EL--D---   97 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~---~~--~---   97 (216)
                      +..++..++..++..+...++.+|||+|||+|.+++.+++.   +..+|+|+|+|+.+++.|+.++..+   ++  +   
T Consensus        32 ~~~la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~  111 (250)
T 1o9g_A           32 PVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELE  111 (250)
T ss_dssp             CHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchh
Confidence            45566678887776544446679999999999999999975   3458999999999999999998766   43  2   


Q ss_pred             ----------------------eE-------------EEEccccccccc----ccCCCcccEEEEcCCCCCCCC
Q 027945           98 ----------------------ID-------------FVQCDIRNLEWR----VCSVGHVDTVVMNPPFGTRKK  132 (216)
Q Consensus        98 ----------------------~~-------------~~~~d~~~~~~~----~~~~~~fD~v~~npp~~~~~~  132 (216)
                                            ++             ++++|+.+....    ..  .+||+|++||||.....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~fD~Iv~npp~~~~~~  183 (250)
T 1o9g_A          112 RREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAG--SAPDVVLTDLPYGERTH  183 (250)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTT--CCCSEEEEECCGGGSSS
T ss_pred             hhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCC--CCceEEEeCCCeecccc
Confidence                                  56             999999875421    11  13999999999987643

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.58  E-value=9.4e-14  Score=114.83  Aligned_cols=123  Identities=19%  Similarity=0.129  Sum_probs=88.1

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccccccc-CCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVC-SVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~-~~~~fD~v~~  123 (216)
                      ++.+|||+|||+|.+++.+++.+. +|+++|+|+.+++.|+.|++.+++   +++++++|+.++..... ...+||+|++
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            567999999999999999999777 999999999999999999999887   38999999988654210 0124999999


Q ss_pred             cCCCCCCC-CC-------CCHHHHHHHHhhcC--CcEEEEecCc---cHHHHHHHHhhhcC
Q 027945          124 NPPFGTRK-KG-------VDMDFLSMALKVAS--QAVYSLHKTS---TREHVKKAALRDFN  171 (216)
Q Consensus       124 npp~~~~~-~~-------~~~~~l~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~l~  171 (216)
                      |||+.... ..       ....+++.+.+.++  +.+++.+...   ..+.+...+.+.+.
T Consensus       232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~  292 (332)
T 2igt_A          232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMR  292 (332)
T ss_dssp             CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            99975432 11       13466777777664  3434433322   34455555544444

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.57  E-value=2.2e-14  Score=108.47  Aligned_cols=107  Identities=17%  Similarity=0.192  Sum_probs=76.7

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ..++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++++.++. +++++++|...+....  .++||+|++|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~--~~~fD~v~~~   96 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV--REPIRAAIFN   96 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC--CSCEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc--cCCcCEEEEe
Confidence            346789999999999999999987 55999999999999999999998886 7999998877643211  2249999999


Q ss_pred             CCCCCCC-------CCCCHHHHHHHHhhcC--CcEEEEec
Q 027945          125 PPFGTRK-------KGVDMDFLSMALKVAS--QAVYSLHK  155 (216)
Q Consensus       125 pp~~~~~-------~~~~~~~l~~~~~~~~--~~~~~~~~  155 (216)
                      ++|....       .......++++.+.++  +.+++++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            8876541       1222345666666654  34444443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.57  E-value=3.2e-13  Score=103.71  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI  105 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~  105 (216)
                      +...+...++..+    ...++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|+++++.++. +++++++|+
T Consensus        24 ~~~~i~~~~l~~l----~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~   99 (204)
T 3e05_A           24 TKQEVRAVTLSKL----RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA   99 (204)
T ss_dssp             CCHHHHHHHHHHT----TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT
T ss_pred             ChHHHHHHHHHHc----CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh
Confidence            5555655555443    44577899999999999999999875 56999999999999999999998887 799999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+.......   ||+|+++++++     ....+++++.+.++
T Consensus       100 ~~~~~~~~~---~D~i~~~~~~~-----~~~~~l~~~~~~Lk  133 (204)
T 3e05_A          100 PEGLDDLPD---PDRVFIGGSGG-----MLEEIIDAVDRRLK  133 (204)
T ss_dssp             TTTCTTSCC---CSEEEESCCTT-----CHHHHHHHHHHHCC
T ss_pred             hhhhhcCCC---CCEEEECCCCc-----CHHHHHHHHHHhcC
Confidence            776554334   99999998864     34567888887765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.57  E-value=1.5e-14  Score=111.53  Aligned_cols=99  Identities=11%  Similarity=0.016  Sum_probs=79.8

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCeEEEEccccccccc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~~~~~d~~~~~~~  111 (216)
                      ...++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++...             ...+++++++|+.+++..
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            445778999999999999999998876 999999999999999988653             123789999999998765


Q ss_pred             c-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          112 V-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       112 ~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      + ++   ||+|++...+++........+++++.+.++
T Consensus        98 ~~~~---fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lk  131 (203)
T 1pjz_A           98 DIGH---CAAFYDRAAMIALPADMRERYVQHLEALMP  131 (203)
T ss_dssp             HHHS---EEEEEEESCGGGSCHHHHHHHHHHHHHHSC
T ss_pred             cCCC---EEEEEECcchhhCCHHHHHHHHHHHHHHcC
Confidence            3 46   999999888876643334457788888776

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.56  E-value=1.3e-14  Score=117.17  Aligned_cols=91  Identities=24%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|+.|++.++.  +++++++|+.+... ...   ||+|++|
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~---fD~Vi~~  199 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENI---ADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSC---EEEEEEC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCC---ccEEEEC
Confidence            35789999999999999999988765899999999999999999999988  49999999998876 324   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ||+..      ..++..+.+.++
T Consensus       200 ~p~~~------~~~l~~~~~~Lk  216 (278)
T 2frn_A          200 YVVRT------HEFIPKALSIAK  216 (278)
T ss_dssp             CCSSG------GGGHHHHHHHEE
T ss_pred             CchhH------HHHHHHHHHHCC
Confidence            99654      245666666554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.56  E-value=2.5e-14  Score=122.73  Aligned_cols=120  Identities=26%  Similarity=0.274  Sum_probs=94.7

Q ss_pred             ccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--------------CCCeEEEEeCCHHHHH
Q 027945           20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------------GADQVIAIDIDSDSLE   85 (216)
Q Consensus        20 ~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--------------~~~~v~~~D~~~~~~~   85 (216)
                      ....++|.||..+...|+..+    .+.++.+|||+|||+|.+.+.+++.              ....++|+|+++.+++
T Consensus       147 ~~~~G~fyTP~~v~~~mv~~l----~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~  222 (445)
T 2okc_A          147 KSGAGQYFTPRPLIQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVT  222 (445)
T ss_dssp             TTCCGGGCCCHHHHHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHH
T ss_pred             cccCCcccCcHHHHHHHHHHh----CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHH
Confidence            455778999999888777654    3346679999999999999888863              2247999999999999


Q ss_pred             HHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCC---------------CHHHHHHHHhhcC
Q 027945           86 LASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGV---------------DMDFLSMALKVAS  147 (216)
Q Consensus        86 ~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~---------------~~~~l~~~~~~~~  147 (216)
                      .|+.|+...|.   +..+.++|+...+... .   ||+|++||||+......               ...+++.+.+.++
T Consensus       223 lA~~nl~l~g~~~~~~~i~~gD~l~~~~~~-~---fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk  298 (445)
T 2okc_A          223 LASMNLYLHGIGTDRSPIVCEDSLEKEPST-L---VDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK  298 (445)
T ss_dssp             HHHHHHHHTTCCSSCCSEEECCTTTSCCSS-C---EEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE
T ss_pred             HHHHHHHHhCCCcCCCCEeeCCCCCCcccC-C---cCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhc
Confidence            99999988877   6789999998765443 4   99999999998753221               2478888887765

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.56  E-value=7.7e-14  Score=106.50  Aligned_cols=99  Identities=20%  Similarity=0.295  Sum_probs=78.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|+.+++.++.  +++++++|+.++....  .++||+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI--DCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC--CSCEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc--cCCceEEE
Confidence            46789999999999999999986  346999999999999999999999887  7999999998765321  13499999


Q ss_pred             EcCCCCCCCCC-------CCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKG-------VDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~-------~~~~~l~~~~~~~~  147 (216)
                      +|+||......       ....+++++.+.++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  130 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLV  130 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEE
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCc
Confidence            99998432111       22457788877765

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.56  E-value=1.5e-14  Score=117.49  Aligned_cols=105  Identities=21%  Similarity=0.280  Sum_probs=81.5

Q ss_pred             CCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945           17 SNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (216)
Q Consensus        17 ~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   95 (216)
                      .++...++| |.+.+.+...++..+    ...++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++.++... 
T Consensus        22 ~~~~k~~GQnfL~d~~i~~~Iv~~l----~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~-   95 (295)
T 3gru_A           22 FKPKKKLGQCFLIDKNFVNKAVESA----NLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY-   95 (295)
T ss_dssp             --------CCEECCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC-
T ss_pred             CCCccccCccccCCHHHHHHHHHhc----CCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC-
Confidence            456677777 777877777777654    34577899999999999999999874 59999999999999999998732 


Q ss_pred             CCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           96 LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        96 ~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      .+++++++|+.+.......   ||.|++|+||+..
T Consensus        96 ~~v~vi~gD~l~~~~~~~~---fD~Iv~NlPy~is  127 (295)
T 3gru_A           96 NNIEIIWGDALKVDLNKLD---FNKVVANLPYQIS  127 (295)
T ss_dssp             SSEEEEESCTTTSCGGGSC---CSEEEEECCGGGH
T ss_pred             CCeEEEECchhhCCcccCC---ccEEEEeCccccc
Confidence            2799999999987766545   9999999999754

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.55  E-value=2.5e-14  Score=120.38  Aligned_cols=97  Identities=24%  Similarity=0.452  Sum_probs=79.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC----------------------------------
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA----------------------------------   71 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~----------------------------------   71 (216)
                      -|..+.+++.++...    ...++..+||++||+|.+.++++..+.                                  
T Consensus       176 Apl~e~LAaall~l~----~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~  251 (384)
T 3ldg_A          176 APIKENMAAAIILLS----NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQA  251 (384)
T ss_dssp             CCCCHHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHh----CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhh
Confidence            344566676666543    334678999999999999999986532                                  


Q ss_pred             -----CeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           72 -----DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        72 -----~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                           .+++|+|+|+.+++.|+.|++.+|+  .+++.++|+.+..... .   ||+|++||||+..
T Consensus       252 ~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~---fD~Iv~NPPYG~r  313 (384)
T 3ldg_A          252 DYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-I---NGVLISNPPYGER  313 (384)
T ss_dssp             CTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-C---SCEEEECCCCTTT
T ss_pred             hccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-C---cCEEEECCchhhc
Confidence                 3599999999999999999999998  5999999999876654 4   9999999999876

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.55  E-value=4.9e-14  Score=112.79  Aligned_cols=97  Identities=19%  Similarity=0.234  Sum_probs=80.3

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..++.+|||+|||+|..++.+++.   ...+|+|+|+++.|++.|+++++..+.  +++++++|+.+++...     ||+
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~d~  142 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN-----ASM  142 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCS-----EEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccc-----ccc
Confidence            457789999999999999999975   234899999999999999999988766  7999999999877643     999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          121 VVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       121 v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |+++-..+..........++++.+.++
T Consensus       143 v~~~~~l~~~~~~~~~~~l~~i~~~Lk  169 (261)
T 4gek_A          143 VVLNFTLQFLEPSERQALLDKIYQGLN  169 (261)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             ceeeeeeeecCchhHhHHHHHHHHHcC
Confidence            999887776644444467888888776

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=4e-13  Score=100.77  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      .++...+...++..+    ...++.+|||+|||+|.++..+++ +..+++++|+++.+++.++.+++.++. +++++++|
T Consensus        17 ~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d   91 (183)
T 2yxd_A           17 PITKEEIRAVSIGKL----NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGR   91 (183)
T ss_dssp             CCCCHHHHHHHHHHH----CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             CcCHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            355566666655554    345778999999999999999999 666999999999999999999998887 79999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~  148 (216)
                      +.+ ......   ||+|+++++      .....+++.+.+. ++
T Consensus        92 ~~~-~~~~~~---~D~i~~~~~------~~~~~~l~~~~~~-~g  124 (183)
T 2yxd_A           92 AED-VLDKLE---FNKAFIGGT------KNIEKIIEILDKK-KI  124 (183)
T ss_dssp             HHH-HGGGCC---CSEEEECSC------SCHHHHHHHHHHT-TC
T ss_pred             ccc-cccCCC---CcEEEECCc------ccHHHHHHHHhhC-CC
Confidence            987 333334   999999988      3345677777776 53

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.54  E-value=2.4e-14  Score=120.91  Aligned_cols=97  Identities=30%  Similarity=0.464  Sum_probs=78.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC----------------------------------
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA----------------------------------   71 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~----------------------------------   71 (216)
                      -|..+.+++.++...    ...++.++||++||+|.+.+.++..+.                                  
T Consensus       183 Apl~e~lAa~ll~l~----~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~  258 (393)
T 3k0b_A          183 APIKETMAAALVLLT----SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLA  258 (393)
T ss_dssp             CSCCHHHHHHHHHHS----CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHh----CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhh
Confidence            344456666665443    334678999999999999999987532                                  


Q ss_pred             -----CeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           72 -----DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        72 -----~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                           .+|+|+|+|+.+++.|+.|+..+|+  .++++++|+.+.+... .   ||+|++||||+..
T Consensus       259 ~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~---fD~Iv~NPPYg~r  320 (393)
T 3k0b_A          259 NYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-E---YGVVVANPPYGER  320 (393)
T ss_dssp             CTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-C---SCEEEECCCCCCS
T ss_pred             cccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-C---CCEEEECCCCccc
Confidence                 3599999999999999999999988  5999999999876644 4   9999999999876

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=3.2e-14  Score=114.51  Aligned_cols=102  Identities=19%  Similarity=0.171  Sum_probs=82.9

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.|+.|++.+++ +++++++|+.+. ....   +||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~---~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKD---VADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTT---CEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccC---CceEEEE
Confidence            356789999999999999999986 456999999999999999999999988 789999999987 3222   4999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCc
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTS  157 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~  157 (216)
                      |||+.      ...++..+.+.++  +.++++|.+.
T Consensus       193 d~p~~------~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          193 GYVHK------THKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCCSS------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCccc------HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            99962      2345666666543  4777777765

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.54  E-value=1.2e-13  Score=104.53  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-C--eEEEEccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRN  107 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~--~~~~~~d~~~  107 (216)
                      .....++..+    ...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++.++..++. +  ++++++|+.+
T Consensus        39 ~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENV----VVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred             hHHHHHHHHc----ccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence            3444444433    3447789999999999999999987 55999999999999999999998877 4  9999999987


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ... ...   ||+|++||||+.. ......+++.+.+.++
T Consensus       114 ~~~-~~~---~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~  148 (194)
T 1dus_A          114 NVK-DRK---YNKIITNPPIRAG-KEVLHRIIEEGKELLK  148 (194)
T ss_dssp             TCT-TSC---EEEEEECCCSTTC-HHHHHHHHHHHHHHEE
T ss_pred             ccc-cCC---ceEEEECCCcccc-hhHHHHHHHHHHHHcC
Confidence            543 224   9999999998852 1223456777776654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.54  E-value=1e-13  Score=117.01  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=81.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|.+++.+++.|. .|+++|+|+.+++.|+.|++.+++..++.++|+.+.....  .++||+|++|||+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~--~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGL--EGPFHHVLLDPPT  290 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTC--CCCEEEEEECCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHh--cCCCCEEEECCCc
Confidence            488999999999999999999776 5999999999999999999999986677899998865432  1239999999998


Q ss_pred             CCCCCCC-------CHHHHHHHHhhcC--C-cEEEEecCc
Q 027945          128 GTRKKGV-------DMDFLSMALKVAS--Q-AVYSLHKTS  157 (216)
Q Consensus       128 ~~~~~~~-------~~~~l~~~~~~~~--~-~~~~~~~~~  157 (216)
                      .......       ....+..+.+.++  + .++.+|...
T Consensus       291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            5543221       2355666666654  2 333555554

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.54  E-value=2.1e-14  Score=120.92  Aligned_cols=96  Identities=28%  Similarity=0.481  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC-----------------------------------
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA-----------------------------------   71 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~-----------------------------------   71 (216)
                      |..+.+++.++..    ....++.++||++||+|.+++.++..+.                                   
T Consensus       178 pl~e~lAa~ll~~----~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~  253 (385)
T 3ldu_A          178 PIRETLAAGLIYL----TPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKID  253 (385)
T ss_dssp             CCCHHHHHHHHHT----SCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSC
T ss_pred             CCcHHHHHHHHHh----hCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence            3344555554433    2345678999999999999999987532                                   


Q ss_pred             ----CeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           72 ----DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        72 ----~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                          .+|+|+|+|+.+++.|+.|+..+|+  .+++.++|+.+..... .   ||+|++||||+..
T Consensus       254 ~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~-~---~D~Iv~NPPyg~r  314 (385)
T 3ldu_A          254 NESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSED-E---FGFIITNPPYGER  314 (385)
T ss_dssp             CSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSC-B---SCEEEECCCCCCS
T ss_pred             ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCC-C---CcEEEECCCCcCc
Confidence                3799999999999999999999998  6999999999876543 4   9999999999865

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.54  E-value=2.3e-13  Score=105.38  Aligned_cols=104  Identities=17%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccc--ccccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE--WRVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~~~~~~fD~v~~  123 (216)
                      ++.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.++..++. +++++++|+.+++  ...+   +||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDG---EIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTT---CCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCC---CCCEEEE
Confidence            56799999999999999999763 56999999999999999999998887 8999999998855  2232   4999999


Q ss_pred             cCCCCCCC------CCCCHHHHHHHHhhcC--CcEEEEe
Q 027945          124 NPPFGTRK------KGVDMDFLSMALKVAS--QAVYSLH  154 (216)
Q Consensus       124 npp~~~~~------~~~~~~~l~~~~~~~~--~~~~~~~  154 (216)
                      ++|-....      ......+++.+.+.++  +.+++.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            98853221      1134568888887765  3444444

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.54  E-value=8e-14  Score=117.38  Aligned_cols=108  Identities=20%  Similarity=0.188  Sum_probs=83.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccccc-CCCcccEEEEcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVC-SVGHVDTVVMNP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~fD~v~~np  125 (216)
                      ++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|+.|++.++. +++++++|+.+...... ...+||+|++||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp  287 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  287 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence            6779999999999999999987 66999999999999999999999988 69999999988654310 122499999999


Q ss_pred             CCCCCCCCC-------CHHHHHHHHhhcC--CcEEEEecC
Q 027945          126 PFGTRKKGV-------DMDFLSMALKVAS--QAVYSLHKT  156 (216)
Q Consensus       126 p~~~~~~~~-------~~~~l~~~~~~~~--~~~~~~~~~  156 (216)
                      |+.......       ...++..+.+.++  +.+++++.+
T Consensus       288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            987654332       2345666666654  345554444

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.53  E-value=1.2e-13  Score=109.74  Aligned_cols=134  Identities=12%  Similarity=0.081  Sum_probs=90.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|..++.++.. +..+|+++|+++.+++.|+.|++.++. +++++++|+.++.......++||+|+++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            46789999999999999999975 566999999999999999999999988 7999999998876531112349999996


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec-CccHHHHHHHHhhhcCCccceEEEEEeecCCc
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK-TSTREHVKKAALRDFNASSAEVLCELRYDVPQ  187 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  187 (216)
                      -.      ......++.+.+.++ ++.+++.. ....+.+.... +.+...++.......+.+|.
T Consensus       159 a~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~-~~l~~~G~~~~~~~~~~~p~  216 (249)
T 3g89_A          159 AV------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLP-PALERLGGRLGEVLALQLPL  216 (249)
T ss_dssp             SS------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHH-HHHHHHTEEEEEEEEEECTT
T ss_pred             Cc------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHH-HHHHHcCCeEEEEEEeeCCC
Confidence            32      122456666666654 34444333 33333333322 33332344444444455553

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.53  E-value=1e-13  Score=117.23  Aligned_cols=109  Identities=22%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccccc-CCCcccEEEEc
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVC-SVGHVDTVVMN  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~fD~v~~n  124 (216)
                      ++.+|||+|||+|.+++.+++.|..+|+++|+++.+++.|+.|++.+++  +++++++|+.+...... ...+||+|++|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            6789999999999999999987777999999999999999999999988  69999999988654310 12249999999


Q ss_pred             CCCCCCCCCC-------CHHHHHHHHhhcC--C-cEEEEecC
Q 027945          125 PPFGTRKKGV-------DMDFLSMALKVAS--Q-AVYSLHKT  156 (216)
Q Consensus       125 pp~~~~~~~~-------~~~~l~~~~~~~~--~-~~~~~~~~  156 (216)
                      ||+.......       ...++..+.+.++  + .++.+|..
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            9987653322       2345566666654  2 34444444

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.53  E-value=1.2e-13  Score=110.89  Aligned_cols=125  Identities=20%  Similarity=0.238  Sum_probs=94.4

Q ss_pred             hhHHHHHhccCCCCCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHH
Q 027945            4 KQLESVLGDLEQFSNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD   82 (216)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~   82 (216)
                      .++.+++....  .++..+++| |-+.+.+...++..+    ...++ +|||+|||+|.++..+++.+ .+|+++|+|+.
T Consensus         8 ~~~~~~~~~~~--~~~~k~~GQnfL~d~~i~~~Iv~~~----~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~   79 (271)
T 3fut_A            8 QSVRALLERHG--LFADKRFGQNFLVSEAHLRRIVEAA----RPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLR   79 (271)
T ss_dssp             HHHHHHHHHTT--CCCSTTSSCCEECCHHHHHHHHHHH----CCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGG
T ss_pred             HHHHHHHHhcC--CCccccCCccccCCHHHHHHHHHhc----CCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHH
Confidence            34555555443  345667777 666777777777665    33467 99999999999999999976 59999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945           83 SLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus        83 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                      +++.+++++..  .+++++++|+.++......  .+|.|++|+||+..     ...+.+.+..
T Consensus        80 ~~~~l~~~~~~--~~v~vi~~D~l~~~~~~~~--~~~~iv~NlPy~is-----s~il~~ll~~  133 (271)
T 3fut_A           80 LRPVLEETLSG--LPVRLVFQDALLYPWEEVP--QGSLLVANLPYHIA-----TPLVTRLLKT  133 (271)
T ss_dssp             GHHHHHHHTTT--SSEEEEESCGGGSCGGGSC--TTEEEEEEECSSCC-----HHHHHHHHHH
T ss_pred             HHHHHHHhcCC--CCEEEEECChhhCChhhcc--CccEEEecCccccc-----HHHHHHHhcC
Confidence            99999999863  3799999999998765421  38999999999865     2445555544

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.53  E-value=1e-13  Score=107.51  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=85.1

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC------CeEEEEcccccc
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL------DIDFVQCDIRNL  108 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~  108 (216)
                      ....+...+...++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+.++..++.      +++++++|+...
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (217)
T 3jwh_A           17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ   96 (217)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence            33333333333467899999999999999999874 46999999999999999999987665      599999999766


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .....+   ||+|+++..+++........+++++.+.++
T Consensus        97 ~~~~~~---fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk  132 (217)
T 3jwh_A           97 DKRFHG---YDAATVIEVIEHLDLSRLGAFERVLFEFAQ  132 (217)
T ss_dssp             CGGGCS---CSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred             cccCCC---cCEEeeHHHHHcCCHHHHHHHHHHHHHHcC
Confidence            555445   999999988887744444678888888776

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.53  E-value=8.5e-14  Score=107.99  Aligned_cols=110  Identities=20%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC------CeEEEEccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL------DIDFVQCDIRN  107 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~  107 (216)
                      ..+..+...+...++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|+.++..++.      +++++++|+..
T Consensus        16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~   95 (219)
T 3jwg_A           16 QRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY   95 (219)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc
Confidence            333333333333467899999999999999999865 36999999999999999999877654      68999999976


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+....+   ||+|+++..+++........+++++.+.++
T Consensus        96 ~~~~~~~---fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk  132 (219)
T 3jwg_A           96 RDKRFSG---YDAATVIEVIEHLDENRLQAFEKVLFEFTR  132 (219)
T ss_dssp             CCGGGTT---CSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred             cccccCC---CCEEEEHHHHHhCCHHHHHHHHHHHHHhhC
Confidence            6655445   999999888877743344577888888775

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.53  E-value=4.8e-14  Score=112.40  Aligned_cols=115  Identities=15%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             Ccccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 027945           19 PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD   97 (216)
Q Consensus        19 ~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~   97 (216)
                      +..+++| |-+.+.+...++..+    ...++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.+++++.. ..+
T Consensus         3 ~~k~~GQnFL~d~~i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-~~~   76 (255)
T 3tqs_A            3 MRKRFGQHFLHDSFVLQKIVSAI----HPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-QKN   76 (255)
T ss_dssp             ------CCEECCHHHHHHHHHHH----CCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-CTT
T ss_pred             CCCcCCcccccCHHHHHHHHHhc----CCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-CCC
Confidence            3455666 556777777777665    34577899999999999999999876 5999999999999999999875 227


Q ss_pred             eEEEEcccccccccccC-CCcccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945           98 IDFVQCDIRNLEWRVCS-VGHVDTVVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~-~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                      ++++++|+.+++...-. .++|| |++||||+..     .+.+.+.+..
T Consensus        77 v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY~is-----~~il~~ll~~  119 (255)
T 3tqs_A           77 ITIYQNDALQFDFSSVKTDKPLR-VVGNLPYNIS-----TPLLFHLFSQ  119 (255)
T ss_dssp             EEEEESCTTTCCGGGSCCSSCEE-EEEECCHHHH-----HHHHHHHHHT
T ss_pred             cEEEEcchHhCCHHHhccCCCeE-EEecCCcccC-----HHHHHHHHhC
Confidence            99999999998765411 12488 9999999754     2445555543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.52  E-value=7.8e-14  Score=110.78  Aligned_cols=100  Identities=17%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhhcCC--CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           32 IASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~--~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      ....++..++.....  .++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+.|++.++.  +++++++|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  126 (254)
T 2h00_A           47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK  126 (254)
T ss_dssp             HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence            444555555543322  25679999999999999998865 346999999999999999999998887  4999999976


Q ss_pred             cc-c--ccccCCCcccEEEEcCCCCCCC
Q 027945          107 NL-E--WRVCSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus       107 ~~-~--~~~~~~~~fD~v~~npp~~~~~  131 (216)
                      +. .  .....+++||+|++||||+...
T Consensus       127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          127 TLLMDALKEESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CSSTTTSTTCCSCCBSEEEECCCCC---
T ss_pred             hhhhhhhhcccCCcccEEEECCCCccCc
Confidence            52 1  2210013499999999998653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.52  E-value=2.4e-13  Score=108.70  Aligned_cols=96  Identities=19%  Similarity=0.150  Sum_probs=81.9

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|+.+++..++  +++++++|+.+.+...+.   ||+|++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---fD~i~~  120 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE---LDLIWS  120 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC---EEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC---EEEEEE
Confidence            356789999999999999999988666999999999999999999998887  599999999887755445   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+++..   .....++++.+.++
T Consensus       121 ~~~~~~~---~~~~~l~~~~~~Lk  141 (267)
T 3kkz_A          121 EGAIYNI---GFERGLNEWRKYLK  141 (267)
T ss_dssp             SSCGGGT---CHHHHHHHHGGGEE
T ss_pred             cCCceec---CHHHHHHHHHHHcC
Confidence            9998776   24567788777765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.52  E-value=1e-13  Score=111.89  Aligned_cols=95  Identities=22%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.++..++.+++++++|+.+... ...   ||+|+++.++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~---fD~i~~~~~~  194 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QEN---YDFIVSTVVF  194 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSC---EEEEEECSSG
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCC---ccEEEEccch
Confidence            678999999999999999999866 99999999999999999999988889999999998766 334   9999999999


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++........+++++.+.++
T Consensus       195 ~~~~~~~~~~~l~~~~~~Lk  214 (286)
T 3m70_A          195 MFLNRERVPSIIKNMKEHTN  214 (286)
T ss_dssp             GGSCGGGHHHHHHHHHHTEE
T ss_pred             hhCCHHHHHHHHHHHHHhcC
Confidence            88766666678888888765

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.52  E-value=3.7e-14  Score=111.80  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=85.3

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ..++.+|||+|||+|..+..+++....+++++|+++.+++.|+++....+.+++++.+|+.+..... .+++||.|++|+
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~FD~i~~D~  136 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-PDGHFDGILYDT  136 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-CTTCEEEEEECC
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc-cccCCceEEEee
Confidence            3578899999999999999999876669999999999999999999988878999999998765433 334599999998


Q ss_pred             CCCCCCCC---CCHHHHHHHHhhcC-CcEEEEec
Q 027945          126 PFGTRKKG---VDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       126 p~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      ........   ....+++++.+.++ +++++.++
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            75543222   23456777888776 56666665

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.52  E-value=7.8e-14  Score=107.18  Aligned_cols=91  Identities=32%  Similarity=0.323  Sum_probs=74.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|+.++..++. +++++++|+.+...  ..   ||+|++++
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~---fD~i~~~~  133 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVD--GK---FDLIVANI  133 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCC--SC---EEEEEEES
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCC--CC---ceEEEECC
Confidence            46789999999999999999988777999999999999999999998887 49999999987543  24   99999999


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..     ..+++++.+.++
T Consensus       134 ~~~~~-----~~~l~~~~~~L~  150 (205)
T 3grz_A          134 LAEIL-----LDLIPQLDSHLN  150 (205)
T ss_dssp             CHHHH-----HHHGGGSGGGEE
T ss_pred             cHHHH-----HHHHHHHHHhcC
Confidence            86432     344555555554

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.52  E-value=4.5e-14  Score=115.18  Aligned_cols=104  Identities=23%  Similarity=0.342  Sum_probs=75.2

Q ss_pred             CCCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945           17 SNPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (216)
Q Consensus        17 ~~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   95 (216)
                      ......++| |.+.+.+...++..+    ...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++.++..++
T Consensus        14 ~~~~k~~Gq~fl~~~~i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~   88 (299)
T 2h1r_A           14 RENLYFQGQHLLKNPGILDKIIYAA----KIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEG   88 (299)
T ss_dssp             ---------CEECCHHHHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTT
T ss_pred             ccchhccccceecCHHHHHHHHHhc----CCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence            334555666 445677777666554    34577899999999999999999875 499999999999999999998776


Q ss_pred             C-CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           96 L-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        96 ~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      . +++++++|+.+.+..  .   ||+|++||||+..
T Consensus        89 ~~~v~~~~~D~~~~~~~--~---~D~Vv~n~py~~~  119 (299)
T 2h1r_A           89 YNNLEVYEGDAIKTVFP--K---FDVCTANIPYKIS  119 (299)
T ss_dssp             CCCEEC----CCSSCCC--C---CSEEEEECCGGGH
T ss_pred             CCceEEEECchhhCCcc--c---CCEEEEcCCcccc
Confidence            6 799999999887654  3   9999999999854

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.51  E-value=3.5e-13  Score=105.22  Aligned_cols=122  Identities=11%  Similarity=0.062  Sum_probs=93.2

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC---CeEE
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL---DIDF  100 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~  100 (216)
                      +|........++..+.......++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++..+.   ++++
T Consensus        34 ~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~  113 (221)
T 3dr5_A           34 LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRF  113 (221)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEE
Confidence            56666677777777776544344559999999999999999974 2 56999999999999999999998876   4999


Q ss_pred             EEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          101 VQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       101 ~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +++|+.+..... ..++||+|++|.+     ......+++.+.+.++ ++++++
T Consensus       114 ~~gda~~~l~~~-~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          114 LLSRPLDVMSRL-ANDSYQLVFGQVS-----PMDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             ECSCHHHHGGGS-CTTCEEEEEECCC-----TTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCHHHHHHHh-cCCCcCeEEEcCc-----HHHHHHHHHHHHHHcCCCcEEEE
Confidence            999998865432 1234999999976     2344568888888776 344443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.51  E-value=2.8e-13  Score=104.46  Aligned_cols=108  Identities=22%  Similarity=0.210  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccc
Q 027945           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (216)
Q Consensus        34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~  111 (216)
                      ..+...+...+...++ +|||+|||+|.++..+++.+..+++++|+++.+++.|+.++...+.  +++++++|+.+.+..
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            3444444444343444 9999999999999999987545999999999999999999998876  699999999987755


Q ss_pred             ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          112 VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       112 ~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ...   ||+|+++.++++.  ......++++.+.++
T Consensus       109 ~~~---~D~v~~~~~l~~~--~~~~~~l~~~~~~L~  139 (219)
T 3dlc_A          109 DNY---ADLIVSRGSVFFW--EDVATAFREIYRILK  139 (219)
T ss_dssp             TTC---EEEEEEESCGGGC--SCHHHHHHHHHHHEE
T ss_pred             ccc---ccEEEECchHhhc--cCHHHHHHHHHHhCC
Confidence            445   9999999888776  344567888887765

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.51  E-value=3.7e-13  Score=108.74  Aligned_cols=108  Identities=19%  Similarity=0.208  Sum_probs=72.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeC-CHHHHHHHHHHH-----HhcCC------CeEEEEccccccccccc-
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDI-DSDSLELASENA-----ADLEL------DIDFVQCDIRNLEWRVC-  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~-----~~~~~------~~~~~~~d~~~~~~~~~-  113 (216)
                      .++.+|||+|||+|.+++.+++.+..+|+++|+ ++.+++.|+.|+     +.++.      ++++...|+.+...... 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            567899999999999999999887669999999 899999999999     44432      47777666655321110 


Q ss_pred             --CCCcccEEEE-cCCCCCCCCCCCHHHHHHHHhhcC-------CcEEEEecCc
Q 027945          114 --SVGHVDTVVM-NPPFGTRKKGVDMDFLSMALKVAS-------QAVYSLHKTS  157 (216)
Q Consensus       114 --~~~~fD~v~~-npp~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~  157 (216)
                        ..++||+|++ |+.|+...   ....++.+.+.++       +.+++++.+.
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~---~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~  208 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQA---HDALLRSVKMLLALPANDPTAVALVTFTHH  208 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGG---HHHHHHHHHHHBCCTTTCTTCEEEEEECC-
T ss_pred             hccCCCCCEEEEeCcccChHH---HHHHHHHHHHHhcccCCCCCCEEEEEEEee
Confidence              1224999996 87776432   3344444444332       3556666653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.51  E-value=1.7e-13  Score=123.40  Aligned_cols=107  Identities=17%  Similarity=0.161  Sum_probs=82.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEEEc
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ++.+|||+|||+|.+++.+++.|+.+|+++|+|+.+++.|++|++.|++   +++++++|+.++....  .++||+|++|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~--~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA--NEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC--CCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc--CCCccEEEEC
Confidence            6789999999999999999987887899999999999999999999987   4999999999854332  1349999999


Q ss_pred             CCCCCCCCC---------CCHHHHHHHHhhcC--CcEEEEecC
Q 027945          125 PPFGTRKKG---------VDMDFLSMALKVAS--QAVYSLHKT  156 (216)
Q Consensus       125 pp~~~~~~~---------~~~~~l~~~~~~~~--~~~~~~~~~  156 (216)
                      ||+......         .....+..+.+.++  +.++++|+.
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            998654221         12345666666654  456666665

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.51  E-value=1.2e-12  Score=106.59  Aligned_cols=111  Identities=13%  Similarity=0.099  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      .......+..++..+...++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+.++...+.  +++++++|+.
T Consensus        54 ~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (302)
T 3hem_A           54 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE  132 (302)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH
Confidence            3445556666666666678889999999999999999987 6 5999999999999999999998887  6999999998


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCC-------CCCHHHHHHHHhhcC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKK-------GVDMDFLSMALKVAS  147 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~-------~~~~~~l~~~~~~~~  147 (216)
                      ++   .+.   ||+|+++..+++...       .....+++++.+.++
T Consensus       133 ~~---~~~---fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk  174 (302)
T 3hem_A          133 EF---DEP---VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP  174 (302)
T ss_dssp             GC---CCC---CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC
T ss_pred             Hc---CCC---ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC
Confidence            76   224   999999988877633       233577888888765

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.51  E-value=1.5e-13  Score=120.21  Aligned_cols=112  Identities=19%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      ...+.++|.||.+++..|+..+.....+.++.+|+|++||||.+.+.+++.    +...++|+|+++.++..|+.|+...
T Consensus       192 ~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~  271 (542)
T 3lkd_A          192 SGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH  271 (542)
T ss_dssp             ---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             hcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc
Confidence            445678999999999888887764322346789999999999998888765    3458999999999999999999888


Q ss_pred             CC---CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           95 EL---DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        95 ~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      |.   ++.+.++|.+...++.....+||+|++||||...
T Consensus       272 gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~  310 (542)
T 3lkd_A          272 GVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAK  310 (542)
T ss_dssp             TCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCC
T ss_pred             CCCcCccceEecceecccccccccccccEEEecCCcCCc
Confidence            87   5789999998763211122359999999999753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.51  E-value=1.2e-13  Score=108.92  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ++.+|||+|||+|..++.++.. +..+|+++|+++.+++.|+.+++.++. +++++++|+.++.......++||+|+++.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            6679999999999999999963 456999999999999999999998887 79999999988654210122499999976


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .      .....+++.+.+.++
T Consensus       150 ~------~~~~~~l~~~~~~Lk  165 (240)
T 1xdz_A          150 V------ARLSVLSELCLPLVK  165 (240)
T ss_dssp             C------SCHHHHHHHHGGGEE
T ss_pred             c------CCHHHHHHHHHHhcC
Confidence            3      234567777777765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.51  E-value=2.8e-13  Score=107.83  Aligned_cols=97  Identities=14%  Similarity=0.047  Sum_probs=79.4

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh------------------cCCCeEEEEcccccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD------------------LELDIDFVQCDIRNL  108 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~------------------~~~~~~~~~~d~~~~  108 (216)
                      .++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|+++...                  .+.+++++++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4678999999999999999999876 999999999999999877641                  123799999999998


Q ss_pred             cccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          109 EWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       109 ~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +... +.   ||+|++...++.........+++++.+.++
T Consensus       146 ~~~~~~~---FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lk  182 (252)
T 2gb4_A          146 PRANIGK---FDRIWDRGALVAINPGDHDRYADIILSLLR  182 (252)
T ss_dssp             GGGCCCC---EEEEEESSSTTTSCGGGHHHHHHHHHHTEE
T ss_pred             CcccCCC---EEEEEEhhhhhhCCHHHHHHHHHHHHHHcC
Confidence            7653 34   999999888877755555567888888765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=2.6e-13  Score=105.54  Aligned_cols=104  Identities=20%  Similarity=0.265  Sum_probs=80.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|.++..+++.+. +++++|+++.+++.|+.+...++.+++++++|+.+.+.....   ||+|++++++
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~---~D~v~~~~~~  113 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKT---FDYVIFIDSI  113 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTC---EEEEEEESCG
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCc---EEEEEEcCch
Confidence            477999999999999999998766 999999999999999999988777899999999886644334   9999999994


Q ss_pred             CCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          128 GTRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      +..........++++.+.++ ++.+++..
T Consensus       114 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          114 VHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             GGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            33322334467777777765 33333333

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.50  E-value=5.1e-13  Score=105.90  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      |........++..+.   ...++.+|||+|||+|..+..+++.+..+|+|+|+++.+++.++.++..++.  +++++++|
T Consensus        28 ~~~~~~~~~~l~~l~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  104 (257)
T 3f4k_A           28 PGSPEATRKAVSFIN---ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGS  104 (257)
T ss_dssp             SCCHHHHHHHHTTSC---CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             CCCHHHHHHHHHHHh---cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            444444444443221   2346679999999999999999987655999999999999999999999887  49999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+.+.....   ||+|+++..+++.   .....++++.+.++
T Consensus       105 ~~~~~~~~~~---fD~v~~~~~l~~~---~~~~~l~~~~~~L~  141 (257)
T 3f4k_A          105 MDNLPFQNEE---LDLIWSEGAIYNI---GFERGMNEWSKYLK  141 (257)
T ss_dssp             TTSCSSCTTC---EEEEEEESCSCCC---CHHHHHHHHHTTEE
T ss_pred             hhhCCCCCCC---EEEEEecChHhhc---CHHHHHHHHHHHcC
Confidence            9887765445   9999999888776   24567888887765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.50  E-value=7.7e-13  Score=105.86  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      ......++..++..+...++.+|||+|||+|.++..+++....+|+++|+++.+++.++.++...+.  +++++.+|+.+
T Consensus        43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  122 (273)
T 3bus_A           43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD  122 (273)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence            3445566666666666667889999999999999999975445999999999999999999988776  69999999998


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+...+.   ||+|++...+++..  .....++++.+.++
T Consensus       123 ~~~~~~~---fD~v~~~~~l~~~~--~~~~~l~~~~~~L~  157 (273)
T 3bus_A          123 LPFEDAS---FDAVWALESLHHMP--DRGRALREMARVLR  157 (273)
T ss_dssp             CCSCTTC---EEEEEEESCTTTSS--CHHHHHHHHHTTEE
T ss_pred             CCCCCCC---ccEEEEechhhhCC--CHHHHHHHHHHHcC
Confidence            7665445   99999988887763  23677888888765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.50  E-value=3.6e-13  Score=102.54  Aligned_cols=98  Identities=16%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|.++..+++.+. +++++|+++.+++.++.++...+. +++++++|+.+.+. ...   ||+|++
T Consensus        29 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~D~v~~  103 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ---YDFILS  103 (199)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC---EEEEEE
T ss_pred             hccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC---ceEEEE
Confidence            334677999999999999999998755 999999999999999999988877 79999999988765 334   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.++++.........++++.+.++
T Consensus       104 ~~~l~~~~~~~~~~~l~~~~~~L~  127 (199)
T 2xvm_A          104 TVVLMFLEAKTIPGLIANMQRCTK  127 (199)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHTEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcC
Confidence            999887755556678888888765

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.50  E-value=1.6e-12  Score=97.28  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      ...+...++..+    ...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+.+++.++.  ++ ++++|+
T Consensus        10 ~~~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~   84 (178)
T 3hm2_A           10 KQHVRALAISAL----APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGA   84 (178)
T ss_dssp             HHHHHHHHHHHH----CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCT
T ss_pred             HHHHHHHHHHHh----cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecch
Confidence            344444444333    4457789999999999999999976 356999999999999999999998877  57 888988


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+.....  .++||+|+++.+++.      ..+++.+.+.++
T Consensus        85 ~~~~~~~--~~~~D~i~~~~~~~~------~~~l~~~~~~L~  118 (178)
T 3hm2_A           85 PRAFDDV--PDNPDVIFIGGGLTA------PGVFAAAWKRLP  118 (178)
T ss_dssp             TGGGGGC--CSCCSEEEECC-TTC------TTHHHHHHHTCC
T ss_pred             Hhhhhcc--CCCCCEEEECCcccH------HHHHHHHHHhcC
Confidence            6633321  123999999988765      356777776654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.49  E-value=5.6e-13  Score=105.61  Aligned_cols=110  Identities=12%  Similarity=-0.008  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      ..+.....++.    .+...++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+.+++..+.  +++++++|+
T Consensus        20 ~~~~~~~~l~~----~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~   95 (256)
T 1nkv_A           20 FTEEKYATLGR----VLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA   95 (256)
T ss_dssp             CCHHHHHHHHH----HTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred             CCHHHHHHHHH----hcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence            34444444443    334567789999999999999999976444999999999999999999988876  699999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+.+. ...   ||+|++...+++..  .....++++.+.++
T Consensus        96 ~~~~~-~~~---fD~V~~~~~~~~~~--~~~~~l~~~~r~Lk  131 (256)
T 1nkv_A           96 AGYVA-NEK---CDVAACVGATWIAG--GFAGAEELLAQSLK  131 (256)
T ss_dssp             TTCCC-SSC---EEEEEEESCGGGTS--SSHHHHHHHTTSEE
T ss_pred             HhCCc-CCC---CCEEEECCChHhcC--CHHHHHHHHHHHcC
Confidence            98766 435   99999977766553  35677888887765

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.49  E-value=6.5e-13  Score=102.03  Aligned_cols=123  Identities=15%  Similarity=0.215  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~  106 (216)
                      ...+...++..+... ...++.+|||+|||+|.++..+++. +..+++++|+++.+++.++.++..++. +++++++|+.
T Consensus        47 ~~~~~~~~~~~l~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~  125 (207)
T 1jsx_A           47 NEMLVRHILDSIVVA-PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVE  125 (207)
T ss_dssp             -CHHHHHHHHHHHHG-GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTT
T ss_pred             HHHHHHHHHhhhhhh-hhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchh
Confidence            344555555555432 1124679999999999999999975 456999999999999999999998887 6999999998


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCccHHHH
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTSTREHV  162 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~  162 (216)
                      +.... ..   ||+|+++..      .....+++.+.+.++  +.+++...+...+.+
T Consensus       126 ~~~~~-~~---~D~i~~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  173 (207)
T 1jsx_A          126 EFPSE-PP---FDGVISRAF------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEI  173 (207)
T ss_dssp             TSCCC-SC---EEEEECSCS------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHH
T ss_pred             hCCcc-CC---cCEEEEecc------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHH
Confidence            86532 24   999998742      223466777766654  244444444444444

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.49  E-value=5.2e-13  Score=104.03  Aligned_cols=108  Identities=13%  Similarity=0.162  Sum_probs=79.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc-
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN-  124 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n-  124 (216)
                      ++.+|||+|||+|.+++.+++.. ...|+|+|+++.+++.|+.++..++. +++++++|+.+.....-..+.||.|+++ 
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            56799999999999999999763 45899999999999999999998887 8999999998853211012249999998 


Q ss_pred             -CCCCCCCC----CCCHHHHHHHHhhcCC--cEEEEec
Q 027945          125 -PPFGTRKK----GVDMDFLSMALKVASQ--AVYSLHK  155 (216)
Q Consensus       125 -pp~~~~~~----~~~~~~l~~~~~~~~~--~~~~~~~  155 (216)
                       +|+.....    -....+++.+.+.+++  .+++.+.
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence             55543311    1224588888877653  4444444

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.49  E-value=2.2e-13  Score=108.57  Aligned_cols=110  Identities=24%  Similarity=0.245  Sum_probs=81.3

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~  106 (216)
                      .|+.+-...+....+... ..++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.|+.|++.++..+++.++|+.
T Consensus       100 gtg~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~  177 (254)
T 2nxc_A          100 GTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE  177 (254)
T ss_dssp             --CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             cCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChh
Confidence            344344444444444432 35678999999999999999999877 9999999999999999999998877899999988


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.. ....   ||+|++|++++.     ....+..+.+.++
T Consensus       178 ~~~-~~~~---fD~Vv~n~~~~~-----~~~~l~~~~~~Lk  209 (254)
T 2nxc_A          178 AAL-PFGP---FDLLVANLYAEL-----HAALAPRYREALV  209 (254)
T ss_dssp             HHG-GGCC---EEEEEEECCHHH-----HHHHHHHHHHHEE
T ss_pred             hcC-cCCC---CCEEEECCcHHH-----HHHHHHHHHHHcC
Confidence            742 2224   999999987542     2356666666654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.49  E-value=5.1e-13  Score=103.27  Aligned_cols=99  Identities=13%  Similarity=0.152  Sum_probs=80.5

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      .+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.++...+ +++++++|+.+.+. ...   ||+|+
T Consensus        46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~-~~~---fD~v~  119 (216)
T 3ofk_A           46 SLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFST-AEL---FDLIV  119 (216)
T ss_dssp             HTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCCC-SCC---EEEEE
T ss_pred             HcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC-CeEEEEcchhhCCC-CCC---ccEEE
Confidence            33445678999999999999999998765 99999999999999999987755 79999999998773 334   99999


Q ss_pred             EcCCCCCCCC-CCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKK-GVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~-~~~~~~l~~~~~~~~  147 (216)
                      ++..+++... ......++++.+.++
T Consensus       120 ~~~~l~~~~~~~~~~~~l~~~~~~L~  145 (216)
T 3ofk_A          120 VAEVLYYLEDMTQMRTAIDNMVKMLA  145 (216)
T ss_dssp             EESCGGGSSSHHHHHHHHHHHHHTEE
T ss_pred             EccHHHhCCCHHHHHHHHHHHHHHcC
Confidence            9988877643 223466888887765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.49  E-value=6.4e-13  Score=102.34  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~  107 (216)
                      .+.....++..    +...++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++++..++. +++++++|+.+
T Consensus        62 ~~~~~~~~~~~----l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  136 (210)
T 3lbf_A           62 QPYMVARMTEL----LELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ  136 (210)
T ss_dssp             CHHHHHHHHHH----TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             CHHHHHHHHHh----cCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence            44444444433    344678899999999999999999874 5999999999999999999998877 79999999988


Q ss_pred             ccccccCCCcccEEEEcCCCCCC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      .......   ||+|+++.++++.
T Consensus       137 ~~~~~~~---~D~i~~~~~~~~~  156 (210)
T 3lbf_A          137 GWQARAP---FDAIIVTAAPPEI  156 (210)
T ss_dssp             CCGGGCC---EEEEEESSBCSSC
T ss_pred             CCccCCC---ccEEEEccchhhh
Confidence            6655445   9999998776554

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.48  E-value=6.4e-13  Score=105.70  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=80.7

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|+.++...+. +++++++|+.+.++.+..   ||+|++
T Consensus        34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~---fD~V~~  109 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER---FHIVTC  109 (260)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC---EEEEEE
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCC---EEEEEE
Confidence            445778999999999999999998765 999999999999999999988776 799999999987765545   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +-.+++..  .....++++.+.++
T Consensus       110 ~~~l~~~~--d~~~~l~~~~r~Lk  131 (260)
T 1vl5_A          110 RIAAHHFP--NPASFVSEAYRVLK  131 (260)
T ss_dssp             ESCGGGCS--CHHHHHHHHHHHEE
T ss_pred             hhhhHhcC--CHHHHHHHHHHHcC
Confidence            88877663  33567888887765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.48  E-value=1.4e-12  Score=101.08  Aligned_cols=104  Identities=17%  Similarity=0.158  Sum_probs=77.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccc--ccccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE--WRVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~~~~~~fD~v~~  123 (216)
                      ++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|+.++..++. +++++++|+.++.  .....   ||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~---~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGE---VKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTS---CCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCC---cCEEEE
Confidence            5679999999999999999976 456999999999999999999998887 7999999998854  22334   999998


Q ss_pred             cCCCCCCC------CCCCHHHHHHHHhhcC--CcEEEEe
Q 027945          124 NPPFGTRK------KGVDMDFLSMALKVAS--QAVYSLH  154 (216)
Q Consensus       124 npp~~~~~------~~~~~~~l~~~~~~~~--~~~~~~~  154 (216)
                      +.|-....      .-....+++.+.+.++  +.+++.+
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            75532211      1124567777777654  2444443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.47  E-value=3.2e-13  Score=111.86  Aligned_cols=97  Identities=28%  Similarity=0.371  Sum_probs=79.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.+++. ++ +..+|+++|+|+.+++.|+.|++.+++  +++++++|+.++.   ..   ||+|++|
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~---fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VK---GNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CC---EEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CC---CcEEEEC
Confidence            3678999999999999999 88 677999999999999999999999987  6999999999876   24   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC--C-cEEEEecCc
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS--Q-AVYSLHKTS  157 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~  157 (216)
                      ||+...      .++..+.+...  + .++..|.+.
T Consensus       266 pP~~~~------~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          266 LPKFAH------KFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             CTTTGG------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             CcHhHH------HHHHHHHHHcCCCCEEEEEEeecC
Confidence            997643      56666666653  2 333445554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.47  E-value=9.1e-13  Score=107.80  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             HHHHHHhhcC-CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc
Q 027945           36 MLYTAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV  112 (216)
Q Consensus        36 ~l~~~~~~~~-~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~  112 (216)
                      ....++..+. ..++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++..+++  +++++++|+.+.+...
T Consensus       104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  183 (312)
T 3vc1_A          104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK  183 (312)
T ss_dssp             HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred             HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence            3344555555 456789999999999999999987234999999999999999999999887  5999999999877554


Q ss_pred             cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.   ||+|+++..+++..   ....++++.+.++
T Consensus       184 ~~---fD~V~~~~~l~~~~---~~~~l~~~~~~Lk  212 (312)
T 3vc1_A          184 GA---VTASWNNESTMYVD---LHDLFSEHSRFLK  212 (312)
T ss_dssp             TC---EEEEEEESCGGGSC---HHHHHHHHHHHEE
T ss_pred             CC---EeEEEECCchhhCC---HHHHHHHHHHHcC
Confidence            45   99999988877663   5677787777765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.47  E-value=3.6e-13  Score=107.55  Aligned_cols=111  Identities=20%  Similarity=0.061  Sum_probs=76.9

Q ss_pred             HhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc--cccCCCcc
Q 027945           41 ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW--RVCSVGHV  118 (216)
Q Consensus        41 ~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~f  118 (216)
                      +..+...++.+|||+|||+|.+++.+++++. +|+++|+|+.|++.|++++..+.     +..++.+...  .....++|
T Consensus        38 l~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           38 IFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             HHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSCCCGGGTTCC
T ss_pred             HHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcc-----ceeeeeecccccccccCCCc
Confidence            3344556788999999999999999999765 99999999999999999987642     3333333322  10012349


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCc
Q 027945          119 DTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTS  157 (216)
Q Consensus       119 D~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~  157 (216)
                      |+|+++..+++.........++++.+..+ +.+++++..+
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lLPGG~l~lS~~~g  151 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLVGSGTVRASVKLG  151 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHTTSEEEEEEEBS
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhCcCcEEEEEeccC
Confidence            99999998876533333445555544434 5777777664

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.46  E-value=1.1e-12  Score=110.28  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=79.6

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|.+++.+++.|..+|+|+|++ .+++.|+++++.++.  +++++++|+.+.... ..   ||+|+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~---~D~Iv  134 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EK---VDVII  134 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SC---EEEEE
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-Cc---ceEEE
Confidence            446788999999999999999999887799999999 999999999999887  499999999987655 24   99999


Q ss_pred             EcCCCCCC-CCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTR-KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~-~~~~~~~~l~~~~~~~~  147 (216)
                      +++..+.. .......+++.+.+.++
T Consensus       135 ~~~~~~~l~~e~~~~~~l~~~~~~Lk  160 (376)
T 3r0q_C          135 SEWMGYFLLRESMFDSVISARDRWLK  160 (376)
T ss_dssp             ECCCBTTBTTTCTHHHHHHHHHHHEE
T ss_pred             EcChhhcccchHHHHHHHHHHHhhCC
Confidence            99854433 33344456766666655

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.46  E-value=1.7e-12  Score=97.85  Aligned_cols=108  Identities=19%  Similarity=0.273  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      ++...+...++..+    ...++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++.++..++.  ++++.++|
T Consensus        16 ~~~~~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d   90 (192)
T 1l3i_A           16 PTAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD   90 (192)
T ss_dssp             CCCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred             CChHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecC
Confidence            55666666655544    34577899999999999999999877 6999999999999999999998876  78999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+.......   ||+|+++++++.     ...+++.+.+.++
T Consensus        91 ~~~~~~~~~~---~D~v~~~~~~~~-----~~~~l~~~~~~l~  125 (192)
T 1l3i_A           91 APEALCKIPD---IDIAVVGGSGGE-----LQEILRIIKDKLK  125 (192)
T ss_dssp             HHHHHTTSCC---EEEEEESCCTTC-----HHHHHHHHHHTEE
T ss_pred             HHHhcccCCC---CCEEEECCchHH-----HHHHHHHHHHhcC
Confidence            8873222124   999999988642     3567788877765

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.46  E-value=2.1e-13  Score=113.26  Aligned_cols=96  Identities=18%  Similarity=0.273  Sum_probs=76.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.++.++..++.+.+++.+|+.+..  ...   ||+|++||
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~---fD~Iv~~~  269 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGR---FDMIISNP  269 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSC---EEEEEECC
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCC---eeEEEECC
Confidence            3566899999999999999998753 49999999999999999999998887888999998754  224   99999999


Q ss_pred             CCCCCC---CCCCHHHHHHHHhhcC
Q 027945          126 PFGTRK---KGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~---~~~~~~~l~~~~~~~~  147 (216)
                      ||+...   ......+++++.+.++
T Consensus       270 ~~~~g~~~~~~~~~~~l~~~~~~Lk  294 (343)
T 2pjd_A          270 PFHDGMQTSLDAAQTLIRGAVRHLN  294 (343)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHGGGEE
T ss_pred             CcccCccCCHHHHHHHHHHHHHhCC
Confidence            998631   1223455666666654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.46  E-value=1.1e-12  Score=108.75  Aligned_cols=98  Identities=24%  Similarity=0.260  Sum_probs=78.6

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|+++++.++.  +++++++|+.+.......   ||+|++
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~---~D~Ivs  137 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK---VDVIIS  137 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC---EEEEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc---EEEEEE
Confidence            457789999999999999999998777999999997 99999999998886  799999999987655334   999999


Q ss_pred             cC-CCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NP-PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 np-p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++ +|...........+..+.+.++
T Consensus       138 ~~~~~~l~~~~~~~~~l~~~~~~Lk  162 (340)
T 2fyt_A          138 EWMGYFLLFESMLDSVLYAKNKYLA  162 (340)
T ss_dssp             CCCBTTBTTTCHHHHHHHHHHHHEE
T ss_pred             cCchhhccCHHHHHHHHHHHHhhcC
Confidence            98 4444333334456666666654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.46  E-value=3.9e-13  Score=108.90  Aligned_cols=99  Identities=18%  Similarity=0.258  Sum_probs=78.3

Q ss_pred             cccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--Ce
Q 027945           22 ELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DI   98 (216)
Q Consensus        22 ~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~   98 (216)
                      +++| |-+.+.+...++..+    ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++.++..++.  ++
T Consensus         5 ~~gq~fl~d~~i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v   79 (285)
T 1zq9_A            5 GIGQHILKNPLIINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKL   79 (285)
T ss_dssp             ---CCEECCHHHHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGE
T ss_pred             CCCcCccCCHHHHHHHHHhc----CCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence            3444 334566666655543    445778999999999999999998765 999999999999999999877664  69


Q ss_pred             EEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +++++|+.+....  .   ||+|++|+||+..
T Consensus        80 ~~~~~D~~~~~~~--~---fD~vv~nlpy~~~  106 (285)
T 1zq9_A           80 QVLVGDVLKTDLP--F---FDTCVANLPYQIS  106 (285)
T ss_dssp             EEEESCTTTSCCC--C---CSEEEEECCGGGH
T ss_pred             EEEEcceecccch--h---hcEEEEecCcccc
Confidence            9999999887554  3   9999999999865

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.46  E-value=4.3e-13  Score=117.52  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=90.6

Q ss_pred             ccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----C---------------CCeEEEEeCC
Q 027945           20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G---------------ADQVIAIDID   80 (216)
Q Consensus        20 ~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~---------------~~~v~~~D~~   80 (216)
                      ....++|.||..+...|+..+    .+.++.+|||++||+|.+.+.+++.    +               ...++|+|++
T Consensus       145 ~~~~G~fyTP~~iv~~mv~~l----~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid  220 (541)
T 2ar0_A          145 KSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV  220 (541)
T ss_dssp             -----CCCCCHHHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC
T ss_pred             cccCCeeeCCHHHHHHHHHHh----ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC
Confidence            345788999999888777554    3346779999999999998888753    1               1379999999


Q ss_pred             HHHHHHHHHHHHhcCCC------eEEEEcccccccccccCCCcccEEEEcCCCCCCCC------------CCCHHHHHHH
Q 027945           81 SDSLELASENAADLELD------IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK------------GVDMDFLSMA  142 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~------------~~~~~~l~~~  142 (216)
                      +.+++.|+.|+...+..      ..+.++|+.......  ..+||+|++||||.....            ..+..|+..+
T Consensus       221 ~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~--~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~  298 (541)
T 2ar0_A          221 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN--LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHI  298 (541)
T ss_dssp             HHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT--SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccccccCCeEeCCCccccccc--ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHH
Confidence            99999999999888773      789999988754321  124999999999987632            2235788888


Q ss_pred             HhhcC
Q 027945          143 LKVAS  147 (216)
Q Consensus       143 ~~~~~  147 (216)
                      ++.++
T Consensus       299 l~~Lk  303 (541)
T 2ar0_A          299 IETLH  303 (541)
T ss_dssp             HHHEE
T ss_pred             HHHhC
Confidence            88765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.45  E-value=2.1e-12  Score=104.13  Aligned_cols=110  Identities=16%  Similarity=0.196  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      .....++..++..+...++.+|||+|||+|.++..+++ .+. +|+|+|+++.+++.++.++...+.  +++++++|+.+
T Consensus        47 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           47 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  125 (287)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence            34455666666665566788999999999999999994 455 999999999999999999988776  79999999977


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++   ..   ||+|++...+++........+++++.+.++
T Consensus       126 ~~---~~---fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk  159 (287)
T 1kpg_A          126 FD---EP---VDRIVSIGAFEHFGHERYDAFFSLAHRLLP  159 (287)
T ss_dssp             CC---CC---CSEEEEESCGGGTCTTTHHHHHHHHHHHSC
T ss_pred             CC---CC---eeEEEEeCchhhcChHHHHHHHHHHHHhcC
Confidence            65   24   999999888877755556678888888765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.45  E-value=3.7e-12  Score=100.94  Aligned_cols=94  Identities=17%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             cCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhc-CC-CeEEEEcccccccccccCCCccc
Q 027945           44 FGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADL-EL-DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~-~~-~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      +...++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+.+++.+ +. ++++.++|+.+.+.....   ||
T Consensus        92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~---~D  168 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAA---YD  168 (258)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTC---EE
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCC---cC
Confidence            34557789999999999999999986 4 569999999999999999999887 65 799999999887443334   99


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|++|+|    ..   ...++.+.+.++
T Consensus       169 ~v~~~~~----~~---~~~l~~~~~~L~  189 (258)
T 2pwy_A          169 GVALDLM----EP---WKVLEKAALALK  189 (258)
T ss_dssp             EEEEESS----CG---GGGHHHHHHHEE
T ss_pred             EEEECCc----CH---HHHHHHHHHhCC
Confidence            9999987    22   245666666554

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.45  E-value=7.9e-13  Score=111.02  Aligned_cols=115  Identities=10%  Similarity=0.080  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHH-------hcCC---Ce
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAA-------DLEL---DI   98 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~-------~~~~---~~   98 (216)
                      +.....++.    .+...++.+|||+|||+|.+++.++.. ++.+|+|+|+++.+++.|+.+++       .+|.   ++
T Consensus       159 ~~~i~~il~----~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rV  234 (438)
T 3uwp_A          159 FDLVAQMID----EIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  234 (438)
T ss_dssp             HHHHHHHHH----HHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEE
T ss_pred             HHHHHHHHH----hcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence            444444443    335568889999999999999999854 66579999999999999988653       3343   69


Q ss_pred             EEEEcccccccccc--cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945           99 DFVQCDIRNLEWRV--CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus        99 ~~~~~d~~~~~~~~--~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      +++++|+.+.+..+  ..   ||+|++|++|+..   .....+.++.+.++ +..++++
T Consensus       235 efi~GD~~~lp~~d~~~~---aDVVf~Nn~~F~p---dl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          235 TLERGDFLSEEWRERIAN---TSVIFVNNFAFGP---EVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EEEECCTTSHHHHHHHHT---CSEEEECCTTCCH---HHHHHHHHHHTTSCTTCEEEES
T ss_pred             EEEECcccCCccccccCC---ccEEEEcccccCc---hHHHHHHHHHHcCCCCcEEEEe
Confidence            99999999877643  24   9999999987532   33445666666665 4444444

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.45  E-value=2.4e-13  Score=108.07  Aligned_cols=114  Identities=13%  Similarity=0.147  Sum_probs=84.3

Q ss_pred             CCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 027945           18 NPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL   96 (216)
Q Consensus        18 ~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~   96 (216)
                      ++..+++| |.+.+.+...++..+    ...++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++.+ .  ..
T Consensus         4 ~~~k~~GQnfl~d~~i~~~iv~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~--~~   76 (249)
T 3ftd_A            4 RLKKSFGQHLLVSEGVLKKIAEEL----NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G--DE   76 (249)
T ss_dssp             ----CCCSSCEECHHHHHHHHHHT----TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C--CT
T ss_pred             CCCCcccccccCCHHHHHHHHHhc----CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c--CC
Confidence            34556667 666677777666554    3457789999999999999999998767999999999999999887 2  23


Q ss_pred             CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945           97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus        97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                      +++++++|+.+.+..... + ...|++||||+..     ...+.+.++.
T Consensus        77 ~v~~i~~D~~~~~~~~~~-~-~~~vv~NlPy~i~-----~~il~~ll~~  118 (249)
T 3ftd_A           77 RLEVINEDASKFPFCSLG-K-ELKVVGNLPYNVA-----SLIIENTVYN  118 (249)
T ss_dssp             TEEEECSCTTTCCGGGSC-S-SEEEEEECCTTTH-----HHHHHHHHHT
T ss_pred             CeEEEEcchhhCChhHcc-C-CcEEEEECchhcc-----HHHHHHHHhc
Confidence            799999999998766521 1 3489999999754     3455555554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.45  E-value=2.2e-13  Score=115.75  Aligned_cols=97  Identities=23%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL   96 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~   96 (216)
                      .+...+++.||..++..++..+.    ..++.+|||+|||+|.+++.++++  +..+++|+|+++.+++.|        .
T Consensus        14 ~~~~~g~~~TP~~l~~~~~~~~~----~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~   81 (421)
T 2ih2_A           14 APRSLGRVETPPEVVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------P   81 (421)
T ss_dssp             -------CCCCHHHHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------T
T ss_pred             hcccCceEeCCHHHHHHHHHhhc----cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------C
Confidence            34567889999998888876652    235569999999999999999975  456999999999999887        2


Q ss_pred             CeEEEEcccccccccccCCCcccEEEEcCCCCCCC
Q 027945           97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~  131 (216)
                      +++++++|+.+..... .   ||+|++||||....
T Consensus        82 ~~~~~~~D~~~~~~~~-~---fD~Ii~NPPy~~~~  112 (421)
T 2ih2_A           82 WAEGILADFLLWEPGE-A---FDLILGNPPYGIVG  112 (421)
T ss_dssp             TEEEEESCGGGCCCSS-C---EEEEEECCCCCCBS
T ss_pred             CCcEEeCChhhcCccC-C---CCEEEECcCccCcc
Confidence            5899999998765432 4   99999999998653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.6e-12  Score=105.56  Aligned_cols=98  Identities=15%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhc---CCCeEEEEccccccccccc---CCCcc
Q 027945           47 VSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADL---ELDIDFVQCDIRNLEWRVC---SVGHV  118 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~--~~~~~v~~~D~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~---~~~~f  118 (216)
                      .++.+|||+|||+|..+..+++  .+..+|+|+|+++.+++.|+.+++..   ..+++++++|+.+.+....   ..++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            4778999999999999999995  35679999999999999999999886   3389999999998775540   01249


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          119 DTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       119 D~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |+|+++..+++.   ....+++++.+.++
T Consensus       115 D~V~~~~~l~~~---~~~~~l~~~~~~Lk  140 (299)
T 3g5t_A          115 DMITAVECAHWF---DFEKFQRSAYANLR  140 (299)
T ss_dssp             EEEEEESCGGGS---CHHHHHHHHHHHEE
T ss_pred             eEEeHhhHHHHh---CHHHHHHHHHHhcC
Confidence            999999888777   45577888887765

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.45  E-value=1.5e-13  Score=109.77  Aligned_cols=81  Identities=20%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH-------HHHHHHHHHHHhcCC--CeEEEEcccccccc--cc--c
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS-------DSLELASENAADLEL--DIDFVQCDIRNLEW--RV--C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~-------~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~--~  113 (216)
                      .++.+|||+|||+|.+++.+++.+. +|+++|+++       .+++.|+.|++.++.  +++++++|+.++..  .+  .
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            3567999999999999999998765 899999999       999999999888776  49999999988643  21  2


Q ss_pred             CCCcccEEEEcCCCCCCC
Q 027945          114 SVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~  131 (216)
                      +   ||+|++||||....
T Consensus       161 ~---fD~V~~dP~~~~~~  175 (258)
T 2r6z_A          161 K---PDIVYLDPMYPERR  175 (258)
T ss_dssp             C---CSEEEECCCC----
T ss_pred             C---ccEEEECCCCCCcc
Confidence            4   99999999997653

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.45  E-value=6.5e-13  Score=101.70  Aligned_cols=91  Identities=19%  Similarity=0.173  Sum_probs=77.8

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      +.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++.+..    +++++++|+.+.+...+.   ||+|+++..++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~~~---fD~v~~~~~l~  113 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP----SVTFHHGTITDLSDSPKR---WAGLLAWYSLI  113 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT----TSEEECCCGGGGGGSCCC---EEEEEEESSST
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC----CCeEEeCcccccccCCCC---eEEEEehhhHh
Confidence            67999999999999999998765 99999999999999998843    589999999987755445   99999998888


Q ss_pred             CCCCCCCHHHHHHHHhhcC
Q 027945          129 TRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.........++++.+.++
T Consensus       114 ~~~~~~~~~~l~~~~~~L~  132 (203)
T 3h2b_A          114 HMGPGELPDALVALRMAVE  132 (203)
T ss_dssp             TCCTTTHHHHHHHHHHTEE
T ss_pred             cCCHHHHHHHHHHHHHHcC
Confidence            7765566788888888775

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.45  E-value=8.9e-13  Score=103.14  Aligned_cols=97  Identities=16%  Similarity=0.240  Sum_probs=80.7

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|+.++...+ +++++++|+.+.+.. ..   ||+|+++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~-~~---fD~v~~~  116 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDFE-EK---YDMVVSA  116 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCCC-SC---EEEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccCCC-CC---ceEEEEe
Confidence            3467899999999999999999863 5699999999999999999987766 899999999987765 35   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .++++.........++++.+.++
T Consensus       117 ~~l~~~~~~~~~~~l~~~~~~Lk  139 (234)
T 3dtn_A          117 LSIHHLEDEDKKELYKRSYSILK  139 (234)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             CccccCCHHHHHHHHHHHHHhcC
Confidence            98887743333457888887765

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.44  E-value=1.2e-12  Score=107.57  Aligned_cols=107  Identities=17%  Similarity=0.112  Sum_probs=80.9

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcc
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHV  118 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~f  118 (216)
                      ..+...++.+|||+|||+|.++..+++.+.  .+|+++|+++.+++.|+.+++.++. +++++.+|+.+.......   |
T Consensus        69 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~---f  145 (317)
T 1dl5_A           69 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP---Y  145 (317)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC---E
T ss_pred             HhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC---e
Confidence            333456788999999999999999997643  4699999999999999999998887 699999999886554434   9


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCc
Q 027945          119 DTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTS  157 (216)
Q Consensus       119 D~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  157 (216)
                      |+|+++++++...     ..+.+.++.+ +.+++.+.+.
T Consensus       146 D~Iv~~~~~~~~~-----~~~~~~Lkpg-G~lvi~~~~~  178 (317)
T 1dl5_A          146 DVIFVTVGVDEVP-----ETWFTQLKEG-GRVIVPINLK  178 (317)
T ss_dssp             EEEEECSBBSCCC-----HHHHHHEEEE-EEEEEEBCBG
T ss_pred             EEEEEcCCHHHHH-----HHHHHhcCCC-cEEEEEECCC
Confidence            9999999987653     2333333332 3555555544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.44  E-value=7.3e-13  Score=106.61  Aligned_cols=112  Identities=12%  Similarity=0.214  Sum_probs=83.5

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc-cCCCcccE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV-CSVGHVDT  120 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~~fD~  120 (216)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++.|++.++. +++++++|+.+..... ...++||+
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCE
Confidence            3457789999999999999999974  446999999999999999999999988 8999999998765420 00124999


Q ss_pred             EEEcCCCCCCCC----------------CCCHHHHHHHHhhcC---CcEEEEecC
Q 027945          121 VVMNPPFGTRKK----------------GVDMDFLSMALKVAS---QAVYSLHKT  156 (216)
Q Consensus       121 v~~npp~~~~~~----------------~~~~~~l~~~~~~~~---~~~~~~~~~  156 (216)
                      |++|||+.....                .....+++.+.+..+   ..+|..|..
T Consensus       160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            999999865311                233567777777654   255555554

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.44  E-value=2e-12  Score=102.32  Aligned_cols=101  Identities=20%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             HHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCccc
Q 027945           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        40 ~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      +...+...++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|+.+..  ..+++++++|+.+.+.....   ||
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~---fD  110 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEPDA---YN  110 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCTTC---EE
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCCCC---eE
Confidence            33444455788999999999999999999876699999999999999999876  33799999999887755445   99


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|+++..+++.  ......++++.+.++
T Consensus       111 ~v~~~~~l~~~--~~~~~~l~~~~~~Lk  136 (253)
T 3g5l_A          111 VVLSSLALHYI--ASFDDICKKVYINLK  136 (253)
T ss_dssp             EEEEESCGGGC--SCHHHHHHHHHHHEE
T ss_pred             EEEEchhhhhh--hhHHHHHHHHHHHcC
Confidence            99998888766  334577788877765

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.44  E-value=2.3e-12  Score=101.17  Aligned_cols=118  Identities=11%  Similarity=0.126  Sum_probs=87.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEE
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQ  102 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~  102 (216)
                      +|........++..+...   .++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.|+.+++..++  ++++++
T Consensus        52 ~~~~~~~~~~~l~~~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (232)
T 3ntv_A           52 VPIVDRLTLDLIKQLIRM---NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIE  128 (232)
T ss_dssp             CCCCCHHHHHHHHHHHHH---HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCcCHHHHHHHHHHHhh---cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            444444444444444432   266899999999999999999853 56999999999999999999998887  799999


Q ss_pred             cccccccc-cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          103 CDIRNLEW-RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       103 ~d~~~~~~-~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +|+.+... ..  .++||+|++|.+     ......+++.+.+.++ ++++++
T Consensus       129 ~d~~~~~~~~~--~~~fD~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          129 GNALEQFENVN--DKVYDMIFIDAA-----KAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             SCGGGCHHHHT--TSCEEEEEEETT-----SSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCHHHHHHhhc--cCCccEEEEcCc-----HHHHHHHHHHHHHhcCCCeEEEE
Confidence            99988654 21  124999999876     2345567888888776 344443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.44  E-value=2e-12  Score=104.74  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhhc----CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           32 IASRMLYTAENSF----GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        32 ~~~~~l~~~~~~~----~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      .....+..++..+    ...++.+|||+|||+|..+..+++. +. +|+|+|+++.+++.|+.++...+.  +++++++|
T Consensus        62 ~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  140 (297)
T 2o57_A           62 ASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS  140 (297)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence            3444555555554    4457789999999999999999986 55 999999999999999999988776  69999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+.+..++.   ||+|++...+++...  ....++++.+.++
T Consensus       141 ~~~~~~~~~~---fD~v~~~~~l~~~~~--~~~~l~~~~~~Lk  178 (297)
T 2o57_A          141 FLEIPCEDNS---YDFIWSQDAFLHSPD--KLKVFQECARVLK  178 (297)
T ss_dssp             TTSCSSCTTC---EEEEEEESCGGGCSC--HHHHHHHHHHHEE
T ss_pred             cccCCCCCCC---EeEEEecchhhhcCC--HHHHHHHHHHHcC
Confidence            9987765545   999999877766533  4677888887765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.44  E-value=1.7e-12  Score=102.60  Aligned_cols=107  Identities=19%  Similarity=0.255  Sum_probs=80.1

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCC
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~  115 (216)
                      .+...+......++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.++...+.+++++++|+.+.+... . 
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~-  105 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-E-  105 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-C-
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCC-C-
Confidence            344444443445678999999999999999998765 9999999999999999999888778999999998876543 4 


Q ss_pred             CcccEEEEcCC-CCCCCCCCCHHHHHHHHhhcC
Q 027945          116 GHVDTVVMNPP-FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~npp-~~~~~~~~~~~~l~~~~~~~~  147 (216)
                        ||+|++... .+..........++.+.+.++
T Consensus       106 --fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~  136 (252)
T 1wzn_A          106 --FDAVTMFFSTIMYFDEEDLRKLFSKVAEALK  136 (252)
T ss_dssp             --EEEEEECSSGGGGSCHHHHHHHHHHHHHHEE
T ss_pred             --ccEEEEcCCchhcCCHHHHHHHHHHHHHHcC
Confidence              999997532 222222233456677777665

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.44  E-value=4.4e-12  Score=102.20  Aligned_cols=104  Identities=19%  Similarity=0.256  Sum_probs=82.5

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccc-cccc
Q 027945           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE-WRVC  113 (216)
Q Consensus        37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~~  113 (216)
                      +..++..+. .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.++...+.  +++++++|+.+.+ ....
T Consensus        58 l~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  135 (285)
T 4htf_A           58 LDRVLAEMG-PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET  135 (285)
T ss_dssp             HHHHHHHTC-SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred             HHHHHHhcC-CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence            334444433 3467999999999999999998755 999999999999999999998876  6999999999876 3333


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +   ||+|+++..+++..  ....+++++.+.++
T Consensus       136 ~---fD~v~~~~~l~~~~--~~~~~l~~~~~~Lk  164 (285)
T 4htf_A          136 P---VDLILFHAVLEWVA--DPRSVLQTLWSVLR  164 (285)
T ss_dssp             C---EEEEEEESCGGGCS--CHHHHHHHHHHTEE
T ss_pred             C---ceEEEECchhhccc--CHHHHHHHHHHHcC
Confidence            4   99999998887663  33578888888776

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=4e-12  Score=100.76  Aligned_cols=116  Identities=12%  Similarity=0.079  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      .....++..+...   .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+.+++..+.  +++++++|+.
T Consensus        49 ~~~~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  125 (248)
T 3tfw_A           49 ANQGQFLALLVRL---TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPAL  125 (248)
T ss_dssp             HHHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHHhh---cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3444555554332   26689999999999999999986 2 56999999999999999999998887  6999999998


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      +........++||+|++|.+     ......+++.+.+.++ ++++++.
T Consensus       126 ~~l~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          126 QSLESLGECPAFDLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             HHHHTCCSCCCCSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHHHhcCCCCCeEEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEe
Confidence            75443212235999999876     2344578888888776 4444443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.44  E-value=4.7e-13  Score=106.37  Aligned_cols=108  Identities=18%  Similarity=0.078  Sum_probs=85.6

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCC
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~  115 (216)
                      .+..++..+...++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+.+.... .+++++++|+.+.+...+. 
T Consensus        43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~-  120 (266)
T 3ujc_A           43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEFPENN-  120 (266)
T ss_dssp             HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCCCTTC-
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCCCCCc-
Confidence            34445555455678899999999999999999863349999999999999999988665 4799999999987665445 


Q ss_pred             CcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          116 GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                        ||+|+++..+++........+++++.+.++
T Consensus       121 --fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~  150 (266)
T 3ujc_A          121 --FDLIYSRDAILALSLENKNKLFQKCYKWLK  150 (266)
T ss_dssp             --EEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             --EEEEeHHHHHHhcChHHHHHHHHHHHHHcC
Confidence              999999988877644455677788877765

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.44  E-value=1.5e-12  Score=108.31  Aligned_cols=98  Identities=21%  Similarity=0.251  Sum_probs=80.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.|+++++.++.  +++++++|+.+..... .   ||+|+
T Consensus        47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~-~---~D~Iv  121 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE-Q---VDIII  121 (348)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS-C---EEEEE
T ss_pred             ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCC-c---eeEEE
Confidence            3457789999999999999999998777999999996 88999999998886  6999999998875442 4   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++++++..........+..+.+.++
T Consensus       122 s~~~~~~~~~~~~~~~l~~~~~~Lk  146 (348)
T 2y1w_A          122 SEPMGYMLFNERMLESYLHAKKYLK  146 (348)
T ss_dssp             ECCCBTTBTTTSHHHHHHHGGGGEE
T ss_pred             EeCchhcCChHHHHHHHHHHHhhcC
Confidence            9998766544445566666666655

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.43  E-value=2.7e-12  Score=101.79  Aligned_cols=94  Identities=23%  Similarity=0.247  Sum_probs=75.4

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-C-eEEEEcccccccccccCCCcc
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-D-IDFVQCDIRNLEWRVCSVGHV  118 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~~f  118 (216)
                      .+...++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+.+++.++. + ++++++|+.+.... ..   |
T Consensus        88 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~---~  163 (255)
T 3mb5_A           88 YAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE-EN---V  163 (255)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC-CS---E
T ss_pred             hhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC-CC---c
Confidence            334567889999999999999999986 4 56999999999999999999998887 4 99999999875332 24   9


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          119 DTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       119 D~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |+|++|+|..       ...++++.+.++
T Consensus       164 D~v~~~~~~~-------~~~l~~~~~~L~  185 (255)
T 3mb5_A          164 DHVILDLPQP-------ERVVEHAAKALK  185 (255)
T ss_dssp             EEEEECSSCG-------GGGHHHHHHHEE
T ss_pred             CEEEECCCCH-------HHHHHHHHHHcC
Confidence            9999998822       235666666554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.43  E-value=1.2e-12  Score=101.22  Aligned_cols=98  Identities=22%  Similarity=0.302  Sum_probs=81.7

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|.++..+++.+  ..+|+++|+++.+++.++.++...+. +++++++|+.+.+.....   ||+|
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~---fD~v  110 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT---VDFI  110 (219)
T ss_dssp             TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC---EEEE
T ss_pred             CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC---eeEE
Confidence            44577899999999999999999764  45999999999999999999988877 799999999887655545   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..+++..  ....+++++.+.++
T Consensus       111 ~~~~~l~~~~--~~~~~l~~~~~~Lk  134 (219)
T 3dh0_A          111 FMAFTFHELS--EPLKFLEELKRVAK  134 (219)
T ss_dssp             EEESCGGGCS--SHHHHHHHHHHHEE
T ss_pred             EeehhhhhcC--CHHHHHHHHHHHhC
Confidence            9988887662  34567888887765

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.43  E-value=3.4e-12  Score=104.52  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      .....++..++..+...++.+|||+|||+|.++..+++. +. +|+|+|+++.+++.|+.++...+.  +++++++|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  151 (318)
T 2fk8_A           73 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED  151 (318)
T ss_dssp             HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH
Confidence            344556666666656667889999999999999999976 65 999999999999999999988776  59999999987


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+   ..   ||+|++...+++.........++++.+.++
T Consensus       152 ~~---~~---fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk  185 (318)
T 2fk8_A          152 FA---EP---VDRIVSIEAFEHFGHENYDDFFKRCFNIMP  185 (318)
T ss_dssp             CC---CC---CSEEEEESCGGGTCGGGHHHHHHHHHHHSC
T ss_pred             CC---CC---cCEEEEeChHHhcCHHHHHHHHHHHHHhcC
Confidence            64   24   999999988877644455677888877765

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.43  E-value=3.4e-12  Score=105.30  Aligned_cols=97  Identities=22%  Similarity=0.256  Sum_probs=77.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|+++++.++.  +++++++|+.+...+...   ||+|+++
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~---~D~Ivs~  112 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPK---VDIIISE  112 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSC---EEEEEEC
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCc---ccEEEEe
Confidence            3678999999999999999998877799999999 599999999998887  699999999987655334   9999999


Q ss_pred             CCCCCC-CCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTR-KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~-~~~~~~~~l~~~~~~~~  147 (216)
                      ++.+.. ........+..+.+.++
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~Lk  136 (328)
T 1g6q_1          113 WMGYFLLYESMMDTVLYARDHYLV  136 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEE
T ss_pred             CchhhcccHHHHHHHHHHHHhhcC
Confidence            885544 23333456666656554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.43  E-value=8.4e-13  Score=102.27  Aligned_cols=102  Identities=22%  Similarity=0.243  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccccc
Q 027945           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVC  113 (216)
Q Consensus        34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (216)
                      ..++..+..    .++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++.++.   .+++++++|+.+.+.. .
T Consensus        35 ~~~l~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~-~  105 (220)
T 3hnr_A           35 EDILEDVVN----KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVP-T  105 (220)
T ss_dssp             HHHHHHHHH----TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCC-S
T ss_pred             HHHHHHhhc----cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCC-C
Confidence            445554433    3678999999999999999998755 99999999999999999876   3589999999987665 3


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .   ||+|+++..+++.........++++.+.++
T Consensus       106 ~---fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk  136 (220)
T 3hnr_A          106 S---IDTIVSTYAFHHLTDDEKNVAIAKYSQLLN  136 (220)
T ss_dssp             C---CSEEEEESCGGGSCHHHHHHHHHHHHHHSC
T ss_pred             C---eEEEEECcchhcCChHHHHHHHHHHHHhcC
Confidence            5   999999988887744433447788777765

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.43  E-value=8e-13  Score=104.53  Aligned_cols=107  Identities=12%  Similarity=0.025  Sum_probs=83.9

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCC
Q 027945           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  116 (216)
                      ...++..+...++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|+.++... .+++++++|+.+.+.....  
T Consensus        82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~--  158 (254)
T 1xtp_A           82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNT--  158 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSC--
T ss_pred             HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCCCC--
Confidence            3444444445577899999999999999999876668999999999999999998654 3689999999887655444  


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          117 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       ||+|++...+++.........++++.+.++
T Consensus       159 -fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk  188 (254)
T 1xtp_A          159 -YDLIVIQWTAIYLTDADFVKFFKHCQQALT  188 (254)
T ss_dssp             -EEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             -eEEEEEcchhhhCCHHHHHHHHHHHHHhcC
Confidence             999999888776643344567777777765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.43  E-value=3.7e-12  Score=99.84  Aligned_cols=111  Identities=14%  Similarity=0.047  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      .+++.++. .+..+...+|.+|||+|||+|.++..+++. | .++|+++|+++.+++.++++++..+ ++..+.+|....
T Consensus        61 klaa~i~~-gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~-ni~~V~~d~~~p  138 (233)
T 4df3_A           61 KLAAALLK-GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR-NIFPILGDARFP  138 (233)
T ss_dssp             HHHHHHHT-TCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT-TEEEEESCTTCG
T ss_pred             HHHHHHHh-chhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc-CeeEEEEeccCc
Confidence            45554443 334456678999999999999999999976 4 5699999999999999999887654 788899988764


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .......+.+|+|+++.++.    +....++.++.+.++
T Consensus       139 ~~~~~~~~~vDvVf~d~~~~----~~~~~~l~~~~r~LK  173 (233)
T 4df3_A          139 EKYRHLVEGVDGLYADVAQP----EQAAIVVRNARFFLR  173 (233)
T ss_dssp             GGGTTTCCCEEEEEECCCCT----THHHHHHHHHHHHEE
T ss_pred             cccccccceEEEEEEeccCC----hhHHHHHHHHHHhcc
Confidence            43222334599999998854    233456777777665

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.43  E-value=7.3e-13  Score=103.84  Aligned_cols=95  Identities=17%  Similarity=0.108  Sum_probs=79.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.++...+.  +++++++|+.+.+... .   ||+|+++.
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~---fD~v~~~~  140 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTE-L---FDLIFDYV  140 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSS-C---EEEEEEES
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCC-C---eeEEEECh
Confidence            445999999999999999988554 899999999999999999987543  6999999999876443 4   99999998


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+++........+++++.+.++
T Consensus       141 ~l~~~~~~~~~~~l~~~~~~Lk  162 (235)
T 3lcc_A          141 FFCAIEPEMRPAWAKSMYELLK  162 (235)
T ss_dssp             STTTSCGGGHHHHHHHHHHHEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHCC
Confidence            8887765566678888888765

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.43  E-value=6.6e-13  Score=111.70  Aligned_cols=101  Identities=18%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-C--eEEEEcccccccc-cccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRNLEW-RVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~--~~~~~~d~~~~~~-~~~~~~~fD~  120 (216)
                      .++.+|||++||+|.+++.++++  |+.+|+++|+++.+++.+++|++.|++ +  ++++++|+.++.. ..  .++||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~--~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW--GFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC--SSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh--CCCCcE
Confidence            35789999999999999999984  556999999999999999999999998 3  9999999988654 32  124999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEec
Q 027945          121 VVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHK  155 (216)
Q Consensus       121 v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~  155 (216)
                      |++|| |     +....++..+++..+  +.+|+.|.
T Consensus       129 V~lDP-~-----g~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          129 VDLDP-F-----GTPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             EEECC-S-----SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECC-C-----cCHHHHHHHHHHHhCCCCEEEEEec
Confidence            99999 3     233567888877553  57777773

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.43  E-value=2.3e-12  Score=101.39  Aligned_cols=97  Identities=19%  Similarity=0.171  Sum_probs=80.9

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++.++...+. +++++++|+.+.+.....   ||+|++
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~---fD~v~~   93 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS---FDIITC   93 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC---EEEEEE
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc---EEEEEE
Confidence            456788999999999999999998765 999999999999999999988776 799999999887665445   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +..+++..  .....++++.+.++
T Consensus        94 ~~~l~~~~--~~~~~l~~~~~~Lk  115 (239)
T 1xxl_A           94 RYAAHHFS--DVRKAVREVARVLK  115 (239)
T ss_dssp             ESCGGGCS--CHHHHHHHHHHHEE
T ss_pred             CCchhhcc--CHHHHHHHHHHHcC
Confidence            87776553  34567788777765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.43  E-value=2.2e-12  Score=107.32  Aligned_cols=97  Identities=24%  Similarity=0.211  Sum_probs=78.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|+++++.++.  +++++++|+.+.+.+...   ||+|+++
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---fD~Iis~  140 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEK---VDIIISE  140 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSC---EEEEEEC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCc---eEEEEEc
Confidence            46789999999999999999998877999999995 99999999999887  499999999988665434   9999999


Q ss_pred             CCCCCC-CCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTR-KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~-~~~~~~~~l~~~~~~~~  147 (216)
                      ++.+.. .......++..+.+.++
T Consensus       141 ~~~~~l~~~~~~~~~l~~~~r~Lk  164 (349)
T 3q7e_A          141 WMGYCLFYESMLNTVLHARDKWLA  164 (349)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEE
T ss_pred             cccccccCchhHHHHHHHHHHhCC
Confidence            875444 33344456666666654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.43  E-value=9e-13  Score=111.21  Aligned_cols=79  Identities=20%  Similarity=0.162  Sum_probs=67.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CC-CeEEEEccccccccc--ccCCCcccEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL--EL-DIDFVQCDIRNLEWR--VCSVGHVDTVV  122 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~-~~~~~~~d~~~~~~~--~~~~~~fD~v~  122 (216)
                      ++.+|||+|||+|..++.+++.+ .+|+++|+|+.+++.|+.|++.+  |. +++++++|+.++...  ...   ||+|+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~---fDvV~  168 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFH---PDYIY  168 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHC---CSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCC---ceEEE
Confidence            37899999999999999999865 49999999999999999999988  76 799999999986432  224   99999


Q ss_pred             EcCCCCCC
Q 027945          123 MNPPFGTR  130 (216)
Q Consensus       123 ~npp~~~~  130 (216)
                      +||||...
T Consensus       169 lDPPrr~~  176 (410)
T 3ll7_A          169 VDPARRSG  176 (410)
T ss_dssp             ECCEEC--
T ss_pred             ECCCCcCC
Confidence            99999764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.43  E-value=2.7e-12  Score=105.33  Aligned_cols=82  Identities=16%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++.|++.++. +++++++|+.++......   ||+|
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~---fD~I  191 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE---FDKI  191 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC---EEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccccc---CCEE
Confidence            4467789999999999999999975  346999999999999999999999888 899999999887653324   9999


Q ss_pred             EEcCCCCC
Q 027945          122 VMNPPFGT  129 (216)
Q Consensus       122 ~~npp~~~  129 (216)
                      ++|||+..
T Consensus       192 l~d~Pcsg  199 (315)
T 1ixk_A          192 LLDAPCTG  199 (315)
T ss_dssp             EEECCTTS
T ss_pred             EEeCCCCC
Confidence            99999754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.42  E-value=6.5e-13  Score=102.21  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+..+++++|+++.+++.++.+.... .+++++++|+.+.+.....   ||+|+++++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~i~~~~~d~~~~~~~~~~---fD~v~~~~~  116 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV-PQLRWETMDVRKLDFPSAS---FDVVLEKGT  116 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC-TTCEEEECCTTSCCSCSSC---EEEEEEESH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC-CCcEEEEcchhcCCCCCCc---ccEEEECcc
Confidence            466799999999999999999887669999999999999999998642 2789999999887554434   999999988


Q ss_pred             CCCCCC-------------CCCHHHHHHHHhhcC-CcEEEEecCccH
Q 027945          127 FGTRKK-------------GVDMDFLSMALKVAS-QAVYSLHKTSTR  159 (216)
Q Consensus       127 ~~~~~~-------------~~~~~~l~~~~~~~~-~~~~~~~~~~~~  159 (216)
                      ++....             ......++++.+.++ ++.+++..+...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            754321             122466777777765 344444444333

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.42  E-value=1.5e-12  Score=105.34  Aligned_cols=114  Identities=13%  Similarity=0.068  Sum_probs=85.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CeEEEEccccccc---ccccCCCcc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIRNLE---WRVCSVGHV  118 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~---~~~~~~~~f  118 (216)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.|++++...+.     ++.+..+|+.+.+   .....   |
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---f  131 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG---F  131 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTC---E
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCC---e
Confidence            3678999999999999999999866 999999999999999988754332     6889999998876   33334   9


Q ss_pred             cEEEEc-CCCCCCCC-----CCCHHHHHHHHhhcCCcEEEEecCccHHHHHH
Q 027945          119 DTVVMN-PPFGTRKK-----GVDMDFLSMALKVASQAVYSLHKTSTREHVKK  164 (216)
Q Consensus       119 D~v~~n-pp~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      |+|++. ..+++...     .....+++++.+.+++..++++...+.+.+..
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  183 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  183 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhh
Confidence            999997 67766543     33557888888887644444444444444443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.42  E-value=3.5e-12  Score=102.59  Aligned_cols=95  Identities=16%  Similarity=0.285  Sum_probs=74.0

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhc-CC-CeEEEEcccccccccccCCCc
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADL-EL-DIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~-~~-~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      ..+...++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|+.+++.+ +. +++++++|+.+... ...   
T Consensus       104 ~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~-~~~---  179 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-DQM---  179 (275)
T ss_dssp             --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC-SCC---
T ss_pred             HHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc-CCC---
Confidence            3334567789999999999999999976  3569999999999999999999988 76 79999999987332 224   


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          118 VDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ||+|++|+|    ..   ..+++.+.+.++
T Consensus       180 fD~Vi~~~~----~~---~~~l~~~~~~Lk  202 (275)
T 1yb2_A          180 YDAVIADIP----DP---WNHVQKIASMMK  202 (275)
T ss_dssp             EEEEEECCS----CG---GGSHHHHHHTEE
T ss_pred             ccEEEEcCc----CH---HHHHHHHHHHcC
Confidence            999999887    22   245666666554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.42  E-value=7.8e-13  Score=103.91  Aligned_cols=119  Identities=8%  Similarity=0.049  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc--c
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL--E  109 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~  109 (216)
                      +...++..+... ...++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|+.+.+..+.+++++++|+.+.  +
T Consensus        45 ~~~~~~~~l~~~-~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~  123 (236)
T 1zx0_A           45 WETPYMHALAAA-ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT  123 (236)
T ss_dssp             GGHHHHHHHHHH-HTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG
T ss_pred             HHHHHHHHHHhh-cCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc
Confidence            333344443332 2346779999999999999999886666999999999999999999988777899999999887  4


Q ss_pred             ccccCCCcccEEEEc-CCCCCCC--CCCCHHHHHHHHhhcC-CcEEEEe
Q 027945          110 WRVCSVGHVDTVVMN-PPFGTRK--KGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       110 ~~~~~~~~fD~v~~n-pp~~~~~--~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      ..+++   ||+|++| .+.....  ......+++++.+.++ ++.++++
T Consensus       124 ~~~~~---fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          124 LPDGH---FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             SCTTC---EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cCCCc---eEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            44434   9999994 1111111  1111245777777766 3444434

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.42  E-value=1.2e-12  Score=105.70  Aligned_cols=99  Identities=16%  Similarity=0.066  Sum_probs=79.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccc-cccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW-RVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|+.++...+.  +++++++|+.+.+. ....   ||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE---FDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC---EEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCC---cCEEEE
Confidence            46789999999999999999887766999999999999999999988765  68999999998765 2334   999999


Q ss_pred             cCCCCC--CCCCCCHHHHHHHHhhcCC
Q 027945          124 NPPFGT--RKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       124 npp~~~--~~~~~~~~~l~~~~~~~~~  148 (216)
                      +..+++  ........+++++.+.+++
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~Lkp  166 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRP  166 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCC
Confidence            877765  2223345677888887763

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.42  E-value=6.7e-12  Score=100.95  Aligned_cols=93  Identities=18%  Similarity=0.247  Sum_probs=74.5

Q ss_pred             cCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCccc
Q 027945           44 FGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      +...++.+|||+|||+|.+++.+++. + ..+|+++|+++.+++.|+.|++.++.  +++++.+|+.+.. ....   ||
T Consensus       108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~---~D  183 (277)
T 1o54_A          108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-DEKD---VD  183 (277)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC-SCCS---EE
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc-cCCc---cC
Confidence            34557789999999999999999986 4 56999999999999999999998886  7999999998763 2224   99


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|++|+|..       ...++.+.+.++
T Consensus       184 ~V~~~~~~~-------~~~l~~~~~~L~  204 (277)
T 1o54_A          184 ALFLDVPDP-------WNYIDKCWEALK  204 (277)
T ss_dssp             EEEECCSCG-------GGTHHHHHHHEE
T ss_pred             EEEECCcCH-------HHHHHHHHHHcC
Confidence            999998832       244555555554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.41  E-value=3.5e-12  Score=99.60  Aligned_cols=93  Identities=19%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      .+.+...++..    +...++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++.++..++ +++++++|+.+.
T Consensus        55 ~~~~~~~~~~~----~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~  128 (231)
T 1vbf_A           55 ALNLGIFMLDE----LDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLG  128 (231)
T ss_dssp             CHHHHHHHHHH----TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGC
T ss_pred             CHHHHHHHHHh----cCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccc
Confidence            34444444433    344577899999999999999999876 599999999999999999998877 899999999874


Q ss_pred             cccccCCCcccEEEEcCCCCCC
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ......   ||+|+++.++++.
T Consensus       129 ~~~~~~---fD~v~~~~~~~~~  147 (231)
T 1vbf_A          129 YEEEKP---YDRVVVWATAPTL  147 (231)
T ss_dssp             CGGGCC---EEEEEESSBBSSC
T ss_pred             cccCCC---ccEEEECCcHHHH
Confidence            333334   9999999887654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.41  E-value=8.6e-13  Score=118.89  Aligned_cols=100  Identities=28%  Similarity=0.391  Sum_probs=78.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-----------------------------------
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-----------------------------------   70 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-----------------------------------   70 (216)
                      -|..+.+++.++...    ...++.++||++||||.+.+.++..+                                   
T Consensus       172 apl~e~LAa~ll~~~----~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~  247 (703)
T 3v97_A          172 APIKETLAAAIVMRS----GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR  247 (703)
T ss_dssp             CSSCHHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhh----CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence            344566666666554    33467799999999999999888642                                   


Q ss_pred             --------CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           71 --------ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        71 --------~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                              ..+++|+|+|+.+++.|+.|+..+|+  .+++.++|+.++..+. ..++||+|++||||+..
T Consensus       248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-~~~~~d~Iv~NPPYG~R  316 (703)
T 3v97_A          248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-PKGPYGTVLSNPPYGER  316 (703)
T ss_dssp             HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-TTCCCCEEEECCCCCC-
T ss_pred             hhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-ccCCCCEEEeCCCcccc
Confidence                    14799999999999999999999998  4899999999864432 11249999999999876

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.41  E-value=1.4e-12  Score=103.25  Aligned_cols=102  Identities=16%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             cccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 027945           20 KVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI   98 (216)
Q Consensus        20 ~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~   98 (216)
                      ...++| |.+.+.+...++.    .+...++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++.++... .++
T Consensus         5 ~k~~gQ~fl~d~~~~~~i~~----~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~-~~v   78 (244)
T 1qam_A            5 NIKHSQNFITSKHNIDKIMT----NIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH-DNF   78 (244)
T ss_dssp             -----CCBCCCHHHHHHHHT----TCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC-CSE
T ss_pred             CccCCccccCCHHHHHHHHH----hCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC-CCe
Confidence            344555 5555555555543    3344577899999999999999999876 59999999999999999998643 279


Q ss_pred             EEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +++++|+.+.+.....  .| .|++||||+..
T Consensus        79 ~~~~~D~~~~~~~~~~--~~-~vv~nlPy~~~  107 (244)
T 1qam_A           79 QVLNKDILQFKFPKNQ--SY-KIFGNIPYNIS  107 (244)
T ss_dssp             EEECCCGGGCCCCSSC--CC-EEEEECCGGGH
T ss_pred             EEEEChHHhCCcccCC--Ce-EEEEeCCcccC
Confidence            9999999987664311  25 79999999743

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.41  E-value=8.2e-13  Score=104.10  Aligned_cols=74  Identities=22%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.|+.|++.+++  ++++.++|..+.......   ||+|+.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~---~D~Ivi   96 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDA---IDTIVI   96 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC---CCEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcccc---ccEEEE
Confidence            466899999999999999999876 55899999999999999999999998  599999999987654434   999875

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.41  E-value=1.2e-12  Score=101.86  Aligned_cols=94  Identities=14%  Similarity=0.221  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      ....++..+...   .++.+|||+|||+|..++.+++.  ...+|+++|+++.+++.|+++++.++.  +++++++|+.+
T Consensus        45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (221)
T 3u81_A           45 AKGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD  121 (221)
T ss_dssp             HHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence            344455554433   26679999999999999999984  256999999999999999999999887  59999999977


Q ss_pred             cccccc---CCCcccEEEEcCCCC
Q 027945          108 LEWRVC---SVGHVDTVVMNPPFG  128 (216)
Q Consensus       108 ~~~~~~---~~~~fD~v~~npp~~  128 (216)
                      ......   ..++||+|++|.+.+
T Consensus       122 ~l~~~~~~~~~~~fD~V~~d~~~~  145 (221)
T 3u81_A          122 LIPQLKKKYDVDTLDMVFLDHWKD  145 (221)
T ss_dssp             HGGGTTTTSCCCCCSEEEECSCGG
T ss_pred             HHHHHHHhcCCCceEEEEEcCCcc
Confidence            543321   013599999997643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.41  E-value=2.8e-12  Score=107.33  Aligned_cols=95  Identities=21%  Similarity=0.173  Sum_probs=75.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++++|||+|||+|.+++.+++.|+.+|+++|.++ +++.|+++++.|++  +++++++|+.+...+. .   ||+|+++
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe-~---~DvivsE  156 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPE-Q---VDAIVSE  156 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSS-C---EEEEECC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCc-c---ccEEEee
Confidence            47889999999999999999999988999999996 88999999999998  6999999999876654 4   9999998


Q ss_pred             CCCCCCCC-CCCHHHHHHHHhhc
Q 027945          125 PPFGTRKK-GVDMDFLSMALKVA  146 (216)
Q Consensus       125 pp~~~~~~-~~~~~~l~~~~~~~  146 (216)
                      +.-..... +....++...-+.+
T Consensus       157 ~~~~~l~~e~~l~~~l~a~~r~L  179 (376)
T 4hc4_A          157 WMGYGLLHESMLSSVLHARTKWL  179 (376)
T ss_dssp             CCBTTBTTTCSHHHHHHHHHHHE
T ss_pred             cccccccccchhhhHHHHHHhhC
Confidence            76443322 33334444333433

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.40  E-value=5.1e-12  Score=100.28  Aligned_cols=113  Identities=21%  Similarity=0.269  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHHHHh-hcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           29 GPHIASRMLYTAEN-SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        29 ~~~~~~~~l~~~~~-~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      +......++..+.. .....++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++.++.++.....+++++++|+.+
T Consensus        19 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~   97 (263)
T 2yqz_A           19 PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARA   97 (263)
T ss_dssp             CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTS
T ss_pred             ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEccccc
Confidence            34556666666543 1123467899999999999999999875 499999999999999999983222379999999988


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+...+.   ||+|+++..+++..  .....++++.+.++
T Consensus        98 ~~~~~~~---fD~v~~~~~l~~~~--~~~~~l~~~~~~L~  132 (263)
T 2yqz_A           98 IPLPDES---VHGVIVVHLWHLVP--DWPKVLAEAIRVLK  132 (263)
T ss_dssp             CCSCTTC---EEEEEEESCGGGCT--THHHHHHHHHHHEE
T ss_pred             CCCCCCC---eeEEEECCchhhcC--CHHHHHHHHHHHCC
Confidence            7654444   99999988887663  34567777777765

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.40  E-value=2.8e-12  Score=107.68  Aligned_cols=100  Identities=24%  Similarity=0.170  Sum_probs=81.4

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc---------------CC-CeEEEEcccccccc
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL---------------EL-DIDFVQCDIRNLEW  110 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~---------------~~-~~~~~~~d~~~~~~  110 (216)
                      ++.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.+++|++.+               ++ +++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999986 6568999999999999999999999               77 49999999988654


Q ss_pred             cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEec
Q 027945          111 RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHK  155 (216)
Q Consensus       111 ~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~  155 (216)
                      ..  ..+||+|++|||+.      ...++..+.+..+  +.+|+.|.
T Consensus       127 ~~--~~~fD~I~lDP~~~------~~~~l~~a~~~lk~gG~l~vt~t  165 (378)
T 2dul_A          127 ER--HRYFHFIDLDPFGS------PMEFLDTALRSAKRRGILGVTAT  165 (378)
T ss_dssp             HS--TTCEEEEEECCSSC------CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hc--cCCCCEEEeCCCCC------HHHHHHHHHHhcCCCCEEEEEee
Confidence            32  12499999998743      3578888877654  46666663

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.40  E-value=6.9e-13  Score=104.43  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=79.1

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|+.++...+. +++++++|+.+.+...+.   ||+|+++-.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~---fD~v~~~~~  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS---YDVIWIQWV  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSC---EEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCC---EEEEEEcch
Confidence            5789999999999999999987666999999999999999999887633 689999999887655434   999999887


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++........+++++.+.++
T Consensus       156 l~~~~~~~~~~~l~~~~~~Lk  176 (241)
T 2ex4_A          156 IGHLTDQHLAEFLRRCKGSLR  176 (241)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcC
Confidence            766643334467788777765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.40  E-value=1.1e-12  Score=102.34  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.|+.|++.+++  +++++.+|..+.......   ||+|+.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~---~D~Ivi   90 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQ---VSVITI   90 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC---CCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcC---CCEEEE
Confidence            466799999999999999999876 56899999999999999999999998  599999999765443224   998885

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.40  E-value=8.5e-12  Score=96.93  Aligned_cols=116  Identities=10%  Similarity=0.084  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      .....++..+...   .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+.+++..+.  +++++++|+.
T Consensus        44 ~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  120 (223)
T 3duw_A           44 PTQGKFLQLLVQI---QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLAL  120 (223)
T ss_dssp             HHHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHHHh---hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            4445555555432   26689999999999999999986 2 45999999999999999999998887  5999999998


Q ss_pred             cccccc--cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945          107 NLEWRV--CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       107 ~~~~~~--~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      +.....  ...++||+|++|++.     .....+++.+.+.++ ++++++.
T Consensus       121 ~~~~~~~~~~~~~fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          121 DSLQQIENEKYEPFDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             HHHHHHHHTTCCCCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHHHHHHhcCCCCcCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEe
Confidence            754331  011349999999872     234577888877765 4444443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.40  E-value=3.6e-12  Score=98.29  Aligned_cols=141  Identities=18%  Similarity=0.153  Sum_probs=98.8

Q ss_pred             chhhHHHHHhccCCCCCCc-------cccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CC
Q 027945            2 KLKQLESVLGDLEQFSNPK-------VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-AD   72 (216)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~   72 (216)
                      ..+++++++.+......+.       ..-..+|........++..+...   .++.+|||+|||+|..++.+++. + ..
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~   82 (210)
T 3c3p_A            6 VDSRIGAYLDGLLPEADPVVAAMEQIARERNIPIVDRQTGRLLYLLARI---KQPQLVVVPGDGLGCASWWFARAISISS   82 (210)
T ss_dssp             BCHHHHHHHHHTSCSCCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---HCCSEEEEESCGGGHHHHHHHTTSCTTC
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHh---hCCCEEEEEcCCccHHHHHHHHhCCCCC
Confidence            4566777766554332221       01123566666666666665543   25679999999999999999975 2 46


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-Cc
Q 027945           73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QA  149 (216)
Q Consensus        73 ~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~  149 (216)
                      +|+++|+++.+++.|+++++..+.  +++++++|+.+.....  .+ ||+|++|.+     ......+++.+.+.++ ++
T Consensus        83 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~-fD~v~~~~~-----~~~~~~~l~~~~~~LkpgG  154 (210)
T 3c3p_A           83 RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ--RD-IDILFMDCD-----VFNGADVLERMNRCLAKNA  154 (210)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC--CS-EEEEEEETT-----TSCHHHHHHHHGGGEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC--CC-CCEEEEcCC-----hhhhHHHHHHHHHhcCCCe
Confidence            999999999999999999988776  5999999998754332  23 999999865     2345677888877765 34


Q ss_pred             EEEE
Q 027945          150 VYSL  153 (216)
Q Consensus       150 ~~~~  153 (216)
                      ++++
T Consensus       155 ~lv~  158 (210)
T 3c3p_A          155 LLIA  158 (210)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.40  E-value=1e-12  Score=106.03  Aligned_cols=116  Identities=12%  Similarity=0.170  Sum_probs=84.0

Q ss_pred             CCcccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCC---eEEEEeCCHHHHHHHHHHHHh
Q 027945           18 NPKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD---QVIAIDIDSDSLELASENAAD   93 (216)
Q Consensus        18 ~~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~a~~~~~~   93 (216)
                      ++..+++| |-+.+.+...++..+    ...++.+|||+|||+|.++..+++.+..   +|+++|+|+.+++.++++.  
T Consensus        15 ~~~k~~GQ~fL~d~~i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--   88 (279)
T 3uzu_A           15 FARKRFGQNFLVDHGVIDAIVAAI----RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--   88 (279)
T ss_dssp             ---CCCSCCEECCHHHHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--
T ss_pred             CccccCCccccCCHHHHHHHHHhc----CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--
Confidence            45566666 666777777766655    3457789999999999999999987542   2999999999999999984  


Q ss_pred             cCCCeEEEEcccccccccccCC-C--cccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945           94 LELDIDFVQCDIRNLEWRVCSV-G--HVDTVVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus        94 ~~~~~~~~~~d~~~~~~~~~~~-~--~fD~v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                       ..+++++++|+.++++..... .  ..+.|++|+||+..     .+.+.+.+..
T Consensus        89 -~~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~is-----s~il~~ll~~  137 (279)
T 3uzu_A           89 -GELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNIS-----SPLLFHLMSF  137 (279)
T ss_dssp             -GGGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHH-----HHHHHHHGGG
T ss_pred             -CCCcEEEECChhcCChhHhcccccCCceEEEEccCcccc-----HHHHHHHHhc
Confidence             226999999999987655211 0  24689999998754     2444555543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.40  E-value=3.6e-12  Score=99.63  Aligned_cols=74  Identities=19%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.|+.|++.+++  +++++++|..+.......   ||+|+.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~---~D~Ivi   96 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADN---IDTITI   96 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC---CCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccc---cCEEEE
Confidence            466899999999999999999876 55899999999999999999999998  699999999987665434   998774

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.40  E-value=4.5e-12  Score=97.91  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~  106 (216)
                      +.....++..    +...++.+|||+|||+|.++..+++.+.  .+|+++|+++.+++.+++++...+. ++++..+|+.
T Consensus        63 ~~~~~~~~~~----~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  138 (215)
T 2yxe_A           63 IHMVGMMCEL----LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT  138 (215)
T ss_dssp             HHHHHHHHHH----TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG
T ss_pred             HHHHHHHHHh----hCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence            4444444433    3445778999999999999999997642  6999999999999999999988776 6999999986


Q ss_pred             cccccccCCCcccEEEEcCCCCCC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ........   ||+|+++.+++..
T Consensus       139 ~~~~~~~~---fD~v~~~~~~~~~  159 (215)
T 2yxe_A          139 LGYEPLAP---YDRIYTTAAGPKI  159 (215)
T ss_dssp             GCCGGGCC---EEEEEESSBBSSC
T ss_pred             cCCCCCCC---eeEEEECCchHHH
Confidence            54433334   9999999887654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.39  E-value=3.6e-12  Score=99.78  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc----ccccccCCCccc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN----LEWRVCSVGHVD  119 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~fD  119 (216)
                      ...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++.+++.+ .+++++.+|+..    .+..    ++||
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~----~~~D  145 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV----EKVD  145 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS----CCEE
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC----ccEE
Confidence            3456789999999999999999986 5569999999999999999998765 479999999987    3332    2499


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|+.+++    .......+++.+.+.++
T Consensus       146 ~v~~~~~----~~~~~~~~l~~~~~~Lk  169 (230)
T 1fbn_A          146 VIYEDVA----QPNQAEILIKNAKWFLK  169 (230)
T ss_dssp             EEEECCC----STTHHHHHHHHHHHHEE
T ss_pred             EEEEecC----ChhHHHHHHHHHHHhCC
Confidence            9998765    22333556777776654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.39  E-value=1.9e-12  Score=113.37  Aligned_cols=103  Identities=20%  Similarity=0.150  Sum_probs=79.9

Q ss_pred             ccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--------C--------CCeEEEEeCCHHH
Q 027945           20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--------G--------ADQVIAIDIDSDS   83 (216)
Q Consensus        20 ~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--------~--------~~~v~~~D~~~~~   83 (216)
                      ..+.++|.||..++..|+..+.    +.++ +|||++||||.+.+.+++.        .        ...++|+|+++.+
T Consensus       221 ~k~~G~fyTP~~Vv~lmv~ll~----p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~  295 (544)
T 3khk_A          221 GKQGGQYYTPKSIVTLIVEMLE----PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTT  295 (544)
T ss_dssp             TCCSTTTCCCHHHHHHHHHHHC----CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHH
T ss_pred             CccCCeEeCCHHHHHHHHHHHh----cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHH
Confidence            4567899999999988887652    2233 9999999999998877542        0        2489999999999


Q ss_pred             HHHHHHHHHhcCCC--eEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945           84 LELASENAADLELD--IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        84 ~~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      ++.|+.|+...|+.  +.+.++|.+..+..  ...+||+|++||||..
T Consensus       296 ~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~--~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          296 WKLAAMNMVIRGIDFNFGKKNADSFLDDQH--PDLRADFVMTNPPFNM  341 (544)
T ss_dssp             HHHHHHHHHHTTCCCBCCSSSCCTTTSCSC--TTCCEEEEEECCCSSC
T ss_pred             HHHHHHHHHHhCCCcccceeccchhcCccc--ccccccEEEECCCcCC
Confidence            99999999988874  33488888765432  1234999999999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.39  E-value=5.9e-12  Score=97.89  Aligned_cols=115  Identities=18%  Similarity=0.163  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      .....++..+...   .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+.+++..+.  +++++++|+.
T Consensus        50 ~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  126 (225)
T 3tr6_A           50 PEQAQLLALLVKL---MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAK  126 (225)
T ss_dssp             HHHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHHHh---hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHH
Confidence            3444455554433   25679999999999999999985 2 56999999999999999999998887  5999999997


Q ss_pred             cccccccCC---CcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          107 NLEWRVCSV---GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       107 ~~~~~~~~~---~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +........   ++||+|++|++     ......+++.+.+.++ ++++++
T Consensus       127 ~~~~~~~~~~~~~~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~  172 (225)
T 3tr6_A          127 DTLAELIHAGQAWQYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAV  172 (225)
T ss_dssp             HHHHHHHTTTCTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHhhhccCCCCccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence            754332100   34999999987     2334567788877765 344433

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.39  E-value=1.1e-12  Score=113.47  Aligned_cols=103  Identities=20%  Similarity=0.232  Sum_probs=78.6

Q ss_pred             HHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCc
Q 027945           40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        40 ~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      ++..+...++.+|||+|||+|.+++.+++.+..+|+++|+++ +++.|+++++.+++  +++++++|+.+..... .   
T Consensus       150 il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~-~---  224 (480)
T 3b3j_A          150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE-Q---  224 (480)
T ss_dssp             HHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS-C---
T ss_pred             HHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCC-C---
Confidence            333333456789999999999999999988777999999998 99999999999887  6999999998865432 4   


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          118 VDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ||+|+++++.+..........+..+.+.++
T Consensus       225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lk  254 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERMLESYLHAKKYLK  254 (480)
T ss_dssp             EEEEECCCCHHHHTCHHHHHHHHHGGGGEE
T ss_pred             eEEEEEeCchHhcCcHHHHHHHHHHHHhcC
Confidence            999999998443322233444555555554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.39  E-value=6.8e-12  Score=100.53  Aligned_cols=97  Identities=24%  Similarity=0.313  Sum_probs=81.3

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++.++..++. +++++.+|+.+.+.....   ||+|++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~---fD~v~~  111 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSS---FDHIFV  111 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTC---EEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCC---eeEEEE
Confidence            3577899999999999999999874 56999999999999999999998887 799999999987765545   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +..+++...  ...+++++.+.++
T Consensus       112 ~~~l~~~~~--~~~~l~~~~~~L~  133 (276)
T 3mgg_A          112 CFVLEHLQS--PEEALKSLKKVLK  133 (276)
T ss_dssp             ESCGGGCSC--HHHHHHHHHHHEE
T ss_pred             echhhhcCC--HHHHHHHHHHHcC
Confidence            988876632  3467777777765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.39  E-value=3.3e-12  Score=100.11  Aligned_cols=106  Identities=16%  Similarity=0.018  Sum_probs=76.8

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-cccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.+..+++.+ .+++++++|+.+... .. ..++||+|
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~-~~~~~D~V  151 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRM-LIAMVDVI  151 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGG-GCCCEEEE
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcc-cCCcEEEE
Confidence            3456789999999999999999976  3469999999999988888887765 379999999987431 11 12249999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKT  156 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~  156 (216)
                      ++|+|    .......++.++.+.++  +.+++.+.+
T Consensus       152 ~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          152 FADVA----QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             EECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            99998    22222334666666654  355556654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.39  E-value=5.8e-12  Score=98.81  Aligned_cols=97  Identities=15%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC-
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP-  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np-  125 (216)
                      .++.+|||+|||+|.++..+++.+. +++++|+++.+++.++.++...+.+++++++|+.+.+.. ..   ||+|+++. 
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~---fD~v~~~~~  110 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RK---FDLITCCLD  110 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CC---EEEEEECTT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CC---ceEEEEcCc
Confidence            3678999999999999999998765 899999999999999999988777899999999887654 34   99999988 


Q ss_pred             CCCCCCC-CCCHHHHHHHHhhcCC
Q 027945          126 PFGTRKK-GVDMDFLSMALKVASQ  148 (216)
Q Consensus       126 p~~~~~~-~~~~~~l~~~~~~~~~  148 (216)
                      .+++... ......++++.+.+++
T Consensus       111 ~l~~~~~~~~~~~~l~~~~~~L~p  134 (246)
T 1y8c_A          111 STNYIIDSDDLKKYFKAVSNHLKE  134 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCC
Confidence            7766532 3445677888777653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.38  E-value=2.2e-12  Score=116.01  Aligned_cols=119  Identities=17%  Similarity=0.230  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHh------cCC-CeEEEE
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAAD------LEL-DIDFVQ  102 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~------~~~-~~~~~~  102 (216)
                      +....+..+...+...++.+|||+|||+|.++..+++.+.  .+|+|+|+++.+++.|++++..      ++. ++++++
T Consensus       705 L~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiq  784 (950)
T 3htx_A          705 LSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD  784 (950)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEE
T ss_pred             HHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEE
Confidence            3333343333333334778999999999999999998762  5999999999999999987653      244 699999


Q ss_pred             cccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 027945          103 CDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSL  153 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~  153 (216)
                      +|+.+++.....   ||+|++...+++........+++++.+.+++.++++
T Consensus       785 GDa~dLp~~d~s---FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LII  832 (950)
T 3htx_A          785 GSILEFDSRLHD---VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV  832 (950)
T ss_dssp             SCTTSCCTTSCS---CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CchHhCCcccCC---eeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEE
Confidence            999998776545   999999988887755444567888888877443333

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.38  E-value=7.9e-12  Score=100.41  Aligned_cols=95  Identities=23%  Similarity=0.235  Sum_probs=74.9

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhc-C--C-CeEEEEcccccccccccCCC
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADL-E--L-DIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~-~--~-~~~~~~~d~~~~~~~~~~~~  116 (216)
                      .+...++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+.+++.+ +  . +++++++|+.+.......  
T Consensus        94 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~--  171 (280)
T 1i9g_A           94 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS--  171 (280)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC--
T ss_pred             HcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCc--
Confidence            334567789999999999999999975 3 569999999999999999999887 5  3 799999999887544334  


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          117 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       ||+|++|+|    ..   ...++.+.+.++
T Consensus       172 -~D~v~~~~~----~~---~~~l~~~~~~L~  194 (280)
T 1i9g_A          172 -VDRAVLDML----AP---WEVLDAVSRLLV  194 (280)
T ss_dssp             -EEEEEEESS----CG---GGGHHHHHHHEE
T ss_pred             -eeEEEECCc----CH---HHHHHHHHHhCC
Confidence             999999887    22   245666666554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.38  E-value=1.6e-11  Score=99.28  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             CCCCCCEEEEecCCcchHH-HHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~-~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|.++ +.+++...++|+++|+|+.+++.|+++++..|. +++++++|+.+++  +..   ||+|+
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~---FDvV~  193 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLE---FDVLM  193 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCC---CSEEE
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCC---cCEEE
Confidence            5568899999999999765 555664456999999999999999999998876 8999999999865  335   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      ++-.     .......++++.+.++ ++.+++
T Consensus       194 ~~a~-----~~d~~~~l~el~r~LkPGG~Lvv  220 (298)
T 3fpf_A          194 VAAL-----AEPKRRVFRNIHRYVDTETRIIY  220 (298)
T ss_dssp             ECTT-----CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred             ECCC-----ccCHHHHHHHHHHHcCCCcEEEE
Confidence            8533     2334567888887765 334433

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.38  E-value=3.1e-11  Score=95.01  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++...++.  ++++..+|+.+.......   ||+|+
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~D~v~  163 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI---FHAAF  163 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC---BSEEE
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc---ccEEE
Confidence            3457789999999999999999987 56999999999999999999988875  789999999885522224   99999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|+|    .   ....++.+.+.++
T Consensus       164 ~~~~----~---~~~~l~~~~~~L~  181 (248)
T 2yvl_A          164 VDVR----E---PWHYLEKVHKSLM  181 (248)
T ss_dssp             ECSS----C---GGGGHHHHHHHBC
T ss_pred             ECCc----C---HHHHHHHHHHHcC
Confidence            9987    1   1244566666554

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.38  E-value=1.4e-12  Score=103.12  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      .....++..+...   .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+.+++.++.  +++++++|+.
T Consensus        46 ~~~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~  122 (242)
T 3r3h_A           46 PEQAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL  122 (242)
T ss_dssp             HHHHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3444555555433   25679999999999999999985 2 46999999999999999999999887  6999999998


Q ss_pred             ccccccc---CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          107 NLEWRVC---SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       107 ~~~~~~~---~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +......   ..++||+|++|.+     ......+++.+.+.++ ++++++
T Consensus       123 ~~l~~~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~  168 (242)
T 3r3h_A          123 DTLHSLLNEGGEHQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAI  168 (242)
T ss_dssp             HHHHHHHHHHCSSCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHhhccCCCCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEE
Confidence            7654320   0124999999976     3345567888888776 444443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.38  E-value=7.5e-12  Score=112.35  Aligned_cols=110  Identities=24%  Similarity=0.242  Sum_probs=81.0

Q ss_pred             CCccccccCCCCHHHHHHHHHHHHhhcC--CCCCCEEEEecCCcchHHHHHHHcC----CCeEEEEeCCHHHHHHH--HH
Q 027945           18 NPKVELEQYPTGPHIASRMLYTAENSFG--DVSNKVVADFGCGCGTLGAAATLLG----ADQVIAIDIDSDSLELA--SE   89 (216)
Q Consensus        18 ~~~~~~~~~~t~~~~~~~~l~~~~~~~~--~~~~~~vLD~g~G~G~~~~~l~~~~----~~~v~~~D~~~~~~~~a--~~   89 (216)
                      ..+...++|+||+.++..|+..+.....  ..++.+|||+|||+|.+.+.+++..    ..+++|+|+++.+++.|  +.
T Consensus       289 k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~Rl  368 (878)
T 3s1s_A          289 RGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRL  368 (878)
T ss_dssp             TSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHH
T ss_pred             HhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHH
Confidence            3566789999999999988887322222  2357899999999999999998753    24799999999999999  77


Q ss_pred             HHHhcCC-----CeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945           90 NAADLEL-----DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        90 ~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      |+..++.     ...+...|+.......  ..+||+|++||||..
T Consensus       369 NL~lN~LlhGi~~~~I~~dD~L~~~~~~--~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          369 GLLFPQLVSSNNAPTITGEDVCSLNPED--FANVSVVVMNPPYVS  411 (878)
T ss_dssp             HTTSTTTCBTTBCCEEECCCGGGCCGGG--GTTEEEEEECCBCCS
T ss_pred             HHHHhhhhcCCCcceEEecchhcccccc--cCCCCEEEECCCccc
Confidence            7765332     2356666766532211  124999999999965

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.38  E-value=1.5e-12  Score=99.93  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=75.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|..+..++.....+|+++|+++.+++.++.++...+.+++++++|+.+.+.....   ||+|+++.+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~---fD~v~~~~~   98 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDES---MSFVYSYGT   98 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTC---EEEEEECSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCc---eeEEEEcCh
Confidence            35679999999999985444333334999999999999999999887777789999999887654434   999999877


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++.........++++.+.++
T Consensus        99 l~~~~~~~~~~~l~~~~~~Lk  119 (209)
T 2p8j_A           99 IFHMRKNDVKEAIDEIKRVLK  119 (209)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEE
T ss_pred             HHhCCHHHHHHHHHHHHHHcC
Confidence            766533344567777777765

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.37  E-value=8.4e-12  Score=98.94  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      ......++..+...   .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++..+.  +++++++|+
T Consensus        64 ~~~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           64 SADEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             CHHHHHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CHHHHHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            34555566655543   35679999999999999999975 3 46999999999999999999998887  699999999


Q ss_pred             cccccccc----CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          106 RNLEWRVC----SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       106 ~~~~~~~~----~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      .+......    ..++||+|++|.+     ......+++.+.+.++ ++++++
T Consensus       141 ~~~l~~l~~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~  188 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGY  188 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEE
T ss_pred             HHHHHHHHhccCCCCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEE
Confidence            87533210    0234999999876     2345677888887765 444444

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.37  E-value=3.7e-12  Score=99.24  Aligned_cols=96  Identities=23%  Similarity=0.360  Sum_probs=79.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC------CeEEEEcccccccccccCCCcccEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL------DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++.++...+.      +++++++|+...+.....   ||+|
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~D~v  105 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSS---FDFA  105 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTC---EEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCc---eeEE
Confidence            678999999999999999998755 999999999999999999988765      579999999987755445   9999


Q ss_pred             EEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGV-DMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~-~~~~l~~~~~~~~  147 (216)
                      +++..++...... ...+++++.+.++
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~  132 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLK  132 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEE
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcC
Confidence            9998887764322 2367777777765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.36  E-value=1.1e-11  Score=96.70  Aligned_cols=102  Identities=18%  Similarity=0.195  Sum_probs=79.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccccc-C--CCccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVC-S--VGHVD  119 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~-~--~~~fD  119 (216)
                      .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++.++.  +++++++|+.+...... .  .++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            35679999999999999999975 2 56999999999999999999998876  79999999977533210 0  02499


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +|++|++     ......+++.+.+.++ ++++++
T Consensus       148 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~  177 (229)
T 2avd_A          148 VAVVDAD-----KENCSAYYERCLQLLRPGGILAV  177 (229)
T ss_dssp             EEEECSC-----STTHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEE
Confidence            9999987     2344577888887765 444444

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.36  E-value=1e-11  Score=100.22  Aligned_cols=96  Identities=21%  Similarity=0.254  Sum_probs=80.4

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|..+..+++. + ..+|+|+|+++.+++.|+.++...+.+++++++|+.+.+... +   ||+|++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~---fD~v~~   95 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-K---YDIAIC   95 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-C---EEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCC-C---eeEEEE
Confidence            356789999999999999999976 3 369999999999999999999887778999999999876643 4   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +..+++..  .....++++.+.++
T Consensus        96 ~~~l~~~~--~~~~~l~~~~~~Lk  117 (284)
T 3gu3_A           96 HAFLLHMT--TPETMLQKMIHSVK  117 (284)
T ss_dssp             ESCGGGCS--SHHHHHHHHHHTEE
T ss_pred             CChhhcCC--CHHHHHHHHHHHcC
Confidence            98877663  33577888888775

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.36  E-value=3.1e-12  Score=104.17  Aligned_cols=87  Identities=20%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc--ccCCCcc
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR--VCSVGHV  118 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~f  118 (216)
                      ..+...++.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.|+.|++.++.+++++++|+.+++..  .....+|
T Consensus        20 ~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~   99 (301)
T 1m6y_A           20 EFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKV   99 (301)
T ss_dssp             HHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             HhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCC
Confidence            33345577899999999999999999863 56999999999999999999988776899999999876421  1001249


Q ss_pred             cEEEEcCCCC
Q 027945          119 DTVVMNPPFG  128 (216)
Q Consensus       119 D~v~~npp~~  128 (216)
                      |.|++|||+.
T Consensus       100 D~Vl~D~gvS  109 (301)
T 1m6y_A          100 DGILMDLGVS  109 (301)
T ss_dssp             EEEEEECSCC
T ss_pred             CEEEEcCccc
Confidence            9999999864

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=2e-12  Score=103.11  Aligned_cols=105  Identities=17%  Similarity=0.116  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      ..+.+...++..+    ...++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++.++.+.     +++++++|+.+
T Consensus        18 ~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~   87 (261)
T 3ege_A           18 PDIRIVNAIINLL----NLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAEN   87 (261)
T ss_dssp             CCHHHHHHHHHHH----CCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-----TEEEECCCTTS
T ss_pred             ccHHHHHHHHHHh----CCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-----CCEEEECchhh
Confidence            3344444444333    44577899999999999999999854 59999999999998877664     68999999988


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+...++   ||+|++...+++.  ......++++.+.++
T Consensus        88 ~~~~~~~---fD~v~~~~~l~~~--~~~~~~l~~~~~~Lk  122 (261)
T 3ege_A           88 LALPDKS---VDGVISILAIHHF--SHLEKSFQEMQRIIR  122 (261)
T ss_dssp             CCSCTTC---BSEEEEESCGGGC--SSHHHHHHHHHHHBC
T ss_pred             CCCCCCC---EeEEEEcchHhhc--cCHHHHHHHHHHHhC
Confidence            7765445   9999999888766  334456666666554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.36  E-value=1.4e-12  Score=106.30  Aligned_cols=98  Identities=21%  Similarity=0.138  Sum_probs=79.9

Q ss_pred             CCCCCEEEEecCCcchHHHHHH--HcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAAT--LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~--~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ..++.+|||+|||+|..+..++  ..+..+|+++|+++.+++.|+.++...+.  +++++++|+.+.+.. ..   ||+|
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~---fD~v  191 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EG---YDLL  191 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SC---EEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CC---eEEE
Confidence            3567899999999999999985  34466999999999999999999998887  499999999987655 35   9999


Q ss_pred             EEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGV-DMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~-~~~~l~~~~~~~~  147 (216)
                      +++.++++..... ...+++++.+.++
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk  218 (305)
T 3ocj_A          192 TSNGLNIYEPDDARVTELYRRFWQALK  218 (305)
T ss_dssp             ECCSSGGGCCCHHHHHHHHHHHHHHEE
T ss_pred             EECChhhhcCCHHHHHHHHHHHHHhcC
Confidence            9999888763332 2346777777765

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.36  E-value=1e-11  Score=97.37  Aligned_cols=96  Identities=21%  Similarity=0.267  Sum_probs=78.3

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ...++.+|||+|||+|.++..+++.+..+|+++|+++.+++.++.+....  +++++++|+.+.+.....   ||+|+++
T Consensus        40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~~~~~~---fD~v~~~  114 (243)
T 3bkw_A           40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT--GITYERADLDKLHLPQDS---FDLAYSS  114 (243)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS--SEEEEECCGGGCCCCTTC---EEEEEEE
T ss_pred             cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC--CceEEEcChhhccCCCCC---ceEEEEe
Confidence            44577899999999999999999876669999999999999999887543  589999999887654434   9999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .++++..  .....++++.+.++
T Consensus       115 ~~l~~~~--~~~~~l~~~~~~L~  135 (243)
T 3bkw_A          115 LALHYVE--DVARLFRTVHQALS  135 (243)
T ss_dssp             SCGGGCS--CHHHHHHHHHHHEE
T ss_pred             ccccccc--hHHHHHHHHHHhcC
Confidence            8887663  34567888877765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.36  E-value=1e-11  Score=97.21  Aligned_cols=114  Identities=15%  Similarity=0.154  Sum_probs=84.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEE
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQ  102 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~  102 (216)
                      ++..+.....++...+..   .++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|+.+++..+.  ++++++
T Consensus        35 ~~~~~~~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  111 (233)
T 2gpy_A           35 VPIMDLLGMESLLHLLKM---AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF  111 (233)
T ss_dssp             CCCCCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred             CCCcCHHHHHHHHHHHhc---cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            344444444444444432   266799999999999999999763 46999999999999999999998887  599999


Q ss_pred             cccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          103 CDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|+.+........++||+|+++++..     ....+++.+.+.++
T Consensus       112 ~d~~~~~~~~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~  151 (233)
T 2gpy_A          112 GDALQLGEKLELYPLFDVLFIDAAKG-----QYRRFFDMYSPMVR  151 (233)
T ss_dssp             SCGGGSHHHHTTSCCEEEEEEEGGGS-----CHHHHHHHHGGGEE
T ss_pred             CCHHHHHHhcccCCCccEEEECCCHH-----HHHHHHHHHHHHcC
Confidence            99988533220122499999998843     34577888877765

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.36  E-value=1e-11  Score=99.38  Aligned_cols=97  Identities=19%  Similarity=0.167  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CC-CeEEEEeCCHH------HHHHHHHHHHhcCC--CeEEEE
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSD------SLELASENAADLEL--DIDFVQ  102 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~-~~v~~~D~~~~------~~~~a~~~~~~~~~--~~~~~~  102 (216)
                      +......++..+...++.+|||+|||+|.++..+++. +. .+|+|+|+++.      +++.|++++...+.  ++++++
T Consensus        28 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~  107 (275)
T 3bkx_A           28 QTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF  107 (275)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence            4444455555555668889999999999999999976 43 69999999997      99999999988776  699999


Q ss_pred             cc-c--ccccccccCCCcccEEEEcCCCCCCCC
Q 027945          103 CD-I--RNLEWRVCSVGHVDTVVMNPPFGTRKK  132 (216)
Q Consensus       103 ~d-~--~~~~~~~~~~~~fD~v~~npp~~~~~~  132 (216)
                      +| .  ...+...+.   ||+|+++.++++...
T Consensus       108 ~d~~~~~~~~~~~~~---fD~v~~~~~l~~~~~  137 (275)
T 3bkx_A          108 NTNLSDDLGPIADQH---FDRVVLAHSLWYFAS  137 (275)
T ss_dssp             SCCTTTCCGGGTTCC---CSEEEEESCGGGSSC
T ss_pred             CChhhhccCCCCCCC---EEEEEEccchhhCCC
Confidence            98 3  333333334   999999999877643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.36  E-value=8.3e-12  Score=95.40  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=75.0

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++ +|||+|||+|.++..+++.+. +|+++|+++.+++.|+.++...+.+++++++|+.+.+.....   ||+|+++.. 
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~---fD~v~~~~~-  103 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADA---WEGIVSIFC-  103 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTT---CSEEEEECC-
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCC---ccEEEEEhh-
Confidence            45 999999999999999998765 999999999999999999988777899999999887654434   999999643 


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                       +.........++++.+.++
T Consensus       104 -~~~~~~~~~~l~~~~~~L~  122 (202)
T 2kw5_A          104 -HLPSSLRQQLYPKVYQGLK  122 (202)
T ss_dssp             -CCCHHHHHHHHHHHHTTCC
T ss_pred             -cCCHHHHHHHHHHHHHhcC
Confidence             2222334567777777765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.35  E-value=2e-11  Score=96.52  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=73.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhc--------CC-CeEEEEcccccccccccCCCc
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL--------EL-DIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~--------~~-~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      ++.+|||+|||+|.+++.+++.+ ..+|+|+|+++.+++.|+.+++.+        +. +++++++|+.+.....-..+.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            56799999999999999999875 348999999999999999998876        65 799999999874321112234


Q ss_pred             ccEEEEcCCCCC--C----CCCCCHHHHHHHHhhcC
Q 027945          118 VDTVVMNPPFGT--R----KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       118 fD~v~~npp~~~--~----~~~~~~~~l~~~~~~~~  147 (216)
                      +|.|+.+.|-..  .    +......++..+.+.++
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk  164 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLK  164 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcC
Confidence            999886533211  1    11123578888888776

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.35  E-value=1.1e-11  Score=108.45  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=82.4

Q ss_pred             ccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----C----------CCeEEEEeCCHHHHHHH
Q 027945           22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G----------ADQVIAIDIDSDSLELA   87 (216)
Q Consensus        22 ~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~----------~~~v~~~D~~~~~~~~a   87 (216)
                      +.++|.||.++...|+..+    .+.++.+|+|++||||.+.+.+.++    .          ...++|+|+++.++..|
T Consensus       195 ~~GqfyTP~~Vv~lmv~l~----~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          195 DSGEFYTPRPVVRFMVEVM----DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             SCCCCCCCHHHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             cCceECCcHHHHHHHHHhh----ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            5789999999998887655    3456779999999999998877642    1          13699999999999999


Q ss_pred             HHHHHhcCC-CeEEEEcccccccccc-cCCCcccEEEEcCCCCCC
Q 027945           88 SENAADLEL-DIDFVQCDIRNLEWRV-CSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        88 ~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~  130 (216)
                      +.|+-..|. ...+.++|....+... ....+||+|++||||+..
T Consensus       271 ~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~  315 (530)
T 3ufb_A          271 QMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGE  315 (530)
T ss_dssp             HHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred             HHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCcc
Confidence            999988887 4678899987654332 112359999999999754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.35  E-value=2.4e-12  Score=104.56  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC----CCeEEEEcccccccccccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE----LDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.++...+    .+++++++|+.+++.. ..   ||+|++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~---fD~v~~  156 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD-KR---FGTVVI  156 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS-CC---EEEEEE
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC-CC---cCEEEE
Confidence            344899999999999999998765 89999999999999999998876    4799999999987663 24   999986


Q ss_pred             c-CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 N-PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 n-pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      . ..++.........+++++.+.++
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~L~  181 (299)
T 3g2m_A          157 SSGSINELDEADRRGLYASVREHLE  181 (299)
T ss_dssp             CHHHHTTSCHHHHHHHHHHHHHHEE
T ss_pred             CCcccccCCHHHHHHHHHHHHHHcC
Confidence            3 44444433334567777777765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.35  E-value=1.2e-12  Score=104.44  Aligned_cols=88  Identities=17%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      .+.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+.+     .+++++++|+.+++..+++   ||+|++.-.+
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-----~~v~~~~~~~e~~~~~~~s---fD~v~~~~~~  109 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-----PRVTYAVAPAEDTGLPPAS---VDVAIAAQAM  109 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-----TTEEEEECCTTCCCCCSSC---EEEEEECSCC
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-----CCceeehhhhhhhcccCCc---ccEEEEeeeh
Confidence            456899999999999999998765 999999999999887643     2699999999998877656   9999999888


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |...   ...+++++.+.++
T Consensus       110 h~~~---~~~~~~e~~rvLk  126 (257)
T 4hg2_A          110 HWFD---LDRFWAELRRVAR  126 (257)
T ss_dssp             TTCC---HHHHHHHHHHHEE
T ss_pred             hHhh---HHHHHHHHHHHcC
Confidence            7763   3467788888765

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.34  E-value=5.8e-12  Score=96.99  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=74.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++.++     ++.+..+|+...+ ....   ||+|+++..
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~-~~~~---fD~v~~~~~  111 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD-AIDA---YDAVWAHAC  111 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC-CCSC---EEEEEECSC
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC-CCCc---EEEEEecCc
Confidence            3578999999999999999998755 9999999999999999987     3678899998876 3334   999999988


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++.........++++.+.++
T Consensus       112 l~~~~~~~~~~~l~~~~~~Lk  132 (211)
T 3e23_A          112 LLHVPRDELADVLKLIWRALK  132 (211)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEE
T ss_pred             hhhcCHHHHHHHHHHHHHhcC
Confidence            877654445567788877765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.34  E-value=8.8e-12  Score=97.82  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~  107 (216)
                      .+.+...++..+    ...++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|+.++..++. ++++..+|+..
T Consensus        76 ~~~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  151 (235)
T 1jg1_A           76 APHMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK  151 (235)
T ss_dssp             CHHHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             cHHHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc
Confidence            345555555443    3457789999999999999999976426999999999999999999998887 79999999843


Q ss_pred             ccccccCCCcccEEEEcCCCCCC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ......   +||+|+++.+....
T Consensus       152 ~~~~~~---~fD~Ii~~~~~~~~  171 (235)
T 1jg1_A          152 GFPPKA---PYDVIIVTAGAPKI  171 (235)
T ss_dssp             CCGGGC---CEEEEEECSBBSSC
T ss_pred             CCCCCC---CccEEEECCcHHHH
Confidence            222222   39999998876544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.34  E-value=9.1e-14  Score=110.12  Aligned_cols=103  Identities=19%  Similarity=0.323  Sum_probs=80.1

Q ss_pred             Ccccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 027945           19 PKVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD   97 (216)
Q Consensus        19 ~~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~   97 (216)
                      +..+++| |.+.+.+...++..+    ...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++.++.. ..+
T Consensus         3 ~~k~~gq~fl~~~~~~~~i~~~~----~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~-~~~   76 (245)
T 1yub_A            3 KNIKYSQNFLTSEKVLNQIIKQL----NLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-NTR   76 (245)
T ss_dssp             CCCCSCCCBCCCTTTHHHHHHHC----CCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-CSE
T ss_pred             CCcccCCCCCCCHHHHHHHHHhc----CCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc-CCc
Confidence            4456666 666766666666543    34567899999999999999999876 5999999999999999888762 226


Q ss_pred             eEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ++++++|+.+.+...  .++| .|++||||+..
T Consensus        77 v~~~~~D~~~~~~~~--~~~f-~vv~n~Py~~~  106 (245)
T 1yub_A           77 VTLIHQDILQFQFPN--KQRY-KIVGNIPYHLS  106 (245)
T ss_dssp             EEECCSCCTTTTCCC--SSEE-EEEEECCSSSC
T ss_pred             eEEEECChhhcCccc--CCCc-EEEEeCCcccc
Confidence            899999999876542  1238 89999999865

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.34  E-value=6.9e-12  Score=107.61  Aligned_cols=82  Identities=16%  Similarity=0.149  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-cccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++|++.+|+.+.++++|+.++.. ....   ||+|
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~---FD~I  174 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTY---FHRV  174 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSC---EEEE
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhcccc---CCEE
Confidence            3457889999999999999999965  34699999999999999999999998888899999988653 2224   9999


Q ss_pred             EEcCCCCC
Q 027945          122 VMNPPFGT  129 (216)
Q Consensus       122 ~~npp~~~  129 (216)
                      ++|||+..
T Consensus       175 l~D~PcSg  182 (464)
T 3m6w_A          175 LLDAPCSG  182 (464)
T ss_dssp             EEECCCCC
T ss_pred             EECCCcCC
Confidence            99999854

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.34  E-value=2.4e-11  Score=97.83  Aligned_cols=105  Identities=12%  Similarity=0.089  Sum_probs=79.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc--C---CCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL--E---LDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~--~---~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+.+|||+|||+|.++..++++ +..+|+++|+|+.+++.|++++...  +   .+++++++|+.++....  .++||+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~  151 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDV  151 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeE
Confidence            35689999999999999999987 5679999999999999999988541  1   27999999998754321  234999


Q ss_pred             EEEcCCCCCCCCC--CCHHHHHHHHhhcC-CcEEEE
Q 027945          121 VVMNPPFGTRKKG--VDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       121 v~~npp~~~~~~~--~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      |++|+|.......  ...++++.+.+.++ ++++++
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~  187 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            9999987433211  12578888888776 344433

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.34  E-value=6.8e-12  Score=99.40  Aligned_cols=102  Identities=21%  Similarity=0.186  Sum_probs=80.0

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccC
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCS  114 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~  114 (216)
                      ....++..+...++.+|||+|||+|.++..+++. +..+++++|+++.+++.++.+.    .+++++++|+.+.+ ....
T Consensus        21 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~~-~~~~   95 (259)
T 2p35_A           21 PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----PNTNFGKADLATWK-PAQK   95 (259)
T ss_dssp             HHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----TTSEEEECCTTTCC-CSSC
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----CCcEEEECChhhcC-ccCC
Confidence            3344555545567789999999999999999976 3459999999999999999883    26899999998876 3334


Q ss_pred             CCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          115 VGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                         ||+|+++..+++..  .....++++.+.++
T Consensus        96 ---fD~v~~~~~l~~~~--~~~~~l~~~~~~L~  123 (259)
T 2p35_A           96 ---ADLLYANAVFQWVP--DHLAVLSQLMDQLE  123 (259)
T ss_dssp             ---EEEEEEESCGGGST--THHHHHHHHGGGEE
T ss_pred             ---cCEEEEeCchhhCC--CHHHHHHHHHHhcC
Confidence               99999998887762  34567888877765

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.34  E-value=7.1e-12  Score=102.25  Aligned_cols=113  Identities=14%  Similarity=0.118  Sum_probs=76.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------eEEEEccccc------ccccccC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-------IDFVQCDIRN------LEWRVCS  114 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-------~~~~~~d~~~------~~~~~~~  114 (216)
                      ++.+|||+|||+|.....+++.+..+|+|+|+|+.+++.|+.+....+.+       +++.+.|+..      +.... .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~-~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF-Y  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC-C
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc-c
Confidence            46899999999998777777666669999999999999999988765532       5677887732      21111 1


Q ss_pred             CCcccEEEEcCCCCCC-CCCCCHHHHHHHHhhcCCcEEEEecCccHHH
Q 027945          115 VGHVDTVVMNPPFGTR-KKGVDMDFLSMALKVASQAVYSLHKTSTREH  161 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .++||+|+|.-.+++. ........++++.+.+++..++++.......
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~  174 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK  174 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            2349999987666543 2223357888888887643333333444433

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.34  E-value=2.8e-11  Score=95.20  Aligned_cols=98  Identities=14%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHh------cCC-CeEEEEccccc-cc--ccccCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD------LEL-DIDFVQCDIRN-LE--WRVCSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~------~~~-~~~~~~~d~~~-~~--~~~~~~  115 (216)
                      .++.+|||+|||+|.+++.+++. +...|+|+|+++.+++.|+.+++.      .+. +++++++|+.+ ++  +..++ 
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~-  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ-  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC-
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC-
Confidence            35568999999999999999976 456999999999999999988764      344 79999999987 33  22334 


Q ss_pred             CcccEEEEcCCCCCC------CCCCCHHHHHHHHhhcC
Q 027945          116 GHVDTVVMNPPFGTR------KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~npp~~~~------~~~~~~~~l~~~~~~~~  147 (216)
                        ||.|+++.|-...      +.-....+++.+.+.++
T Consensus       124 --~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lk  159 (235)
T 3ckk_A          124 --LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLR  159 (235)
T ss_dssp             --EEEEEEESCC-----------CCCHHHHHHHHHHEE
T ss_pred             --eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCC
Confidence              9999986542211      11123467888888776

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.33  E-value=6.6e-12  Score=98.48  Aligned_cols=94  Identities=26%  Similarity=0.361  Sum_probs=75.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC-C
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP-P  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np-p  126 (216)
                      ++.+|||+|||+|.++..+++.  .+|+++|+++.+++.|+.++...+.+++++++|+.+.+.. ..   ||+|+++. +
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~---fD~v~~~~~~  106 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EP---VDAITILCDS  106 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SC---EEEEEECTTG
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CC---cCEEEEeCCc
Confidence            4579999999999999999986  5999999999999999999987777899999999887654 24   99999976 5


Q ss_pred             CCCC-CCCCCHHHHHHHHhhcC
Q 027945          127 FGTR-KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~-~~~~~~~~l~~~~~~~~  147 (216)
                      +++. ........++++.+.++
T Consensus       107 ~~~~~~~~~~~~~l~~~~~~L~  128 (243)
T 3d2l_A          107 LNYLQTEADVKQTFDSAARLLT  128 (243)
T ss_dssp             GGGCCSHHHHHHHHHHHHHHEE
T ss_pred             hhhcCCHHHHHHHHHHHHHhcC
Confidence            5554 22334466777777765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.33  E-value=9.1e-12  Score=101.83  Aligned_cols=100  Identities=17%  Similarity=0.151  Sum_probs=77.0

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC-------C-CeEEEEccccccc----ccccCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE-------L-DIDFVQCDIRNLE----WRVCSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-------~-~~~~~~~d~~~~~----~~~~~~  115 (216)
                      ++.+|||+|||+|.++..+++.+..+++++|+++.+++.|+.+....+       . +++++++|+.+.+    ... ..
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD-PQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS-TT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc-CC
Confidence            667999999999999999998666799999999999999999887642       2 6899999998865    221 12


Q ss_pred             CcccEEEEcCCCCCC-CC-CCCHHHHHHHHhhcCC
Q 027945          116 GHVDTVVMNPPFGTR-KK-GVDMDFLSMALKVASQ  148 (216)
Q Consensus       116 ~~fD~v~~npp~~~~-~~-~~~~~~l~~~~~~~~~  148 (216)
                      ++||+|+++..+++. .. .....+++++.+.+++
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp  147 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSP  147 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC
Confidence            249999998887664 22 2234778888887763

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.33  E-value=2.1e-12  Score=102.74  Aligned_cols=97  Identities=12%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCe--EEEEeCCHHHHHHHHHHHHhcCCCeEEEEc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQ--VIAIDIDSDSLELASENAADLELDIDFVQC  103 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~  103 (216)
                      |-+.+.+...++..+    ...++.+|||+|||+|.++. +++ + .+  |+++|+|+.+++.+++++...+ +++++++
T Consensus         3 fL~d~~i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~-~v~~i~~   74 (252)
T 1qyr_A            3 FLNDQFVIDSIVSAI----NPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGP-KLTIYQQ   74 (252)
T ss_dssp             EECCHHHHHHHHHHH----CCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGG-GEEEECS
T ss_pred             CcCCHHHHHHHHHhc----CCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCC-ceEEEEC
Confidence            445666666666655    34567899999999999999 765 4 36  9999999999999998876432 6999999


Q ss_pred             ccccccccccC--CCcccEEEEcCCCCCC
Q 027945          104 DIRNLEWRVCS--VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       104 d~~~~~~~~~~--~~~fD~v~~npp~~~~  130 (216)
                      |+.+.......  .+..|.|++|+||+..
T Consensus        75 D~~~~~~~~~~~~~~~~~~vvsNlPY~i~  103 (252)
T 1qyr_A           75 DAMTFNFGELAEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             CGGGCCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred             chhhCCHHHhhcccCCceEEEECCCCCcc
Confidence            99987654310  0125899999999754

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.33  E-value=1.1e-11  Score=101.45  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++|++.+|+ +++++++|+.+.........+||.|
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEE
Confidence            3457889999999999999999974  456999999999999999999999998 7999999998865432111249999


Q ss_pred             EEcCCCCC
Q 027945          122 VMNPPFGT  129 (216)
Q Consensus       122 ~~npp~~~  129 (216)
                      ++|||+..
T Consensus       179 l~D~PcSg  186 (309)
T 2b9e_A          179 LLDPSCSG  186 (309)
T ss_dssp             EECCCCCC
T ss_pred             EEcCCcCC
Confidence            99999854

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.33  E-value=2.2e-11  Score=100.56  Aligned_cols=95  Identities=20%  Similarity=0.253  Sum_probs=71.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhcC------------CCeEEEEcccccccc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLE------------LDIDFVQCDIRNLEW  110 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~a~~~~~~~~------------~~~~~~~~d~~~~~~  110 (216)
                      ...++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++|+...+            .+++++++|+.+...
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence            4457889999999999999999986 53 699999999999999999988532            269999999988642


Q ss_pred             cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          111 RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       111 ~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .. ..++||+|++|+|-.    ..   .+..+.+.++
T Consensus       182 ~~-~~~~fD~V~~~~~~~----~~---~l~~~~~~Lk  210 (336)
T 2b25_A          182 DI-KSLTFDAVALDMLNP----HV---TLPVFYPHLK  210 (336)
T ss_dssp             -------EEEEEECSSST----TT---THHHHGGGEE
T ss_pred             cc-CCCCeeEEEECCCCH----HH---HHHHHHHhcC
Confidence            21 112399999998732    22   5566666655

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.33  E-value=8.3e-12  Score=96.24  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=74.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++.    .+. +++++++|+.+. .....   ||+|+++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~~~~---~D~v~~~~  115 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TPDRQ---WDAVFFAH  115 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CCSSC---EEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CCCCc---eeEEEEec
Confidence            4567999999999999999998765 99999999999999988    342 799999999887 33334   99999988


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+++.........++++.+.++
T Consensus       116 ~l~~~~~~~~~~~l~~~~~~L~  137 (218)
T 3ou2_A          116 WLAHVPDDRFEAFWESVRSAVA  137 (218)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcC
Confidence            8877654334567777777765

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.33  E-value=1.7e-11  Score=100.25  Aligned_cols=98  Identities=11%  Similarity=0.115  Sum_probs=75.8

Q ss_pred             CCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           49 NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ..+|||+|||+|.++..+++ .+..+|+++|+|+.+++.|++++..... +++++++|+.++.... ..++||+|++|.+
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~  168 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-TPASRDVIIRDVF  168 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-CTTCEEEEEECCS
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-cCCCCCEEEECCC
Confidence            34999999999999999998 4555999999999999999999876533 7999999998875432 1234999999875


Q ss_pred             CCCCCCC--CCHHHHHHHHhhcC
Q 027945          127 FGTRKKG--VDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~--~~~~~l~~~~~~~~  147 (216)
                      .......  ...++++.+.+.++
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~Lk  191 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLA  191 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEE
T ss_pred             CccccchhhhHHHHHHHHHHhcC
Confidence            4432111  23678888888775

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.33  E-value=2e-11  Score=95.12  Aligned_cols=97  Identities=15%  Similarity=0.097  Sum_probs=72.8

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++.+++.+ .+++++++|+.+........++||+|++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            456789999999999999999975 4 369999999999999999998765 4799999999874321101124999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |+|    .......++.++.+.++
T Consensus       150 ~~~----~~~~~~~~l~~~~~~Lk  169 (227)
T 1g8a_A          150 DVA----QPTQAKILIDNAEVYLK  169 (227)
T ss_dssp             CCC----STTHHHHHHHHHHHHEE
T ss_pred             CCC----CHhHHHHHHHHHHHhcC
Confidence            988    22222234777777654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.33  E-value=3.2e-11  Score=92.76  Aligned_cols=88  Identities=16%  Similarity=0.125  Sum_probs=72.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|.++..+   +..+++++|+++.+++.++.+.    .+++++++|+.+.+...++   ||+|+++..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~---fD~v~~~~~l  105 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPGES---FDVVLLFTTL  105 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCSSC---EEEEEEESCT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCCCc---EEEEEEcChh
Confidence            7789999999999998887   4448999999999999999987    2588999999887655445   9999999888


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++..  .....++++.+.++
T Consensus       106 ~~~~--~~~~~l~~~~~~L~  123 (211)
T 2gs9_A          106 EFVE--DVERVLLEARRVLR  123 (211)
T ss_dssp             TTCS--CHHHHHHHHHHHEE
T ss_pred             hhcC--CHHHHHHHHHHHcC
Confidence            7663  34567788777765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.33  E-value=2.1e-11  Score=95.61  Aligned_cols=92  Identities=17%  Similarity=0.274  Sum_probs=75.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++.+...  .+++++++|+.+.+.....   ||+|++...+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~---fD~v~~~~~l  126 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG--PDLSFIKGDLSSLPFENEQ---FEAIMAINSL  126 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCB--TTEEEEECBTTBCSSCTTC---EEEEEEESCT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhccc--CCceEEEcchhcCCCCCCC---ccEEEEcChH
Confidence            667999999999999999999765 999999999999999988522  3699999999987755445   9999998888


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++.  ......++++.+.++
T Consensus       127 ~~~--~~~~~~l~~~~~~L~  144 (242)
T 3l8d_A          127 EWT--EEPLRALNEIKRVLK  144 (242)
T ss_dssp             TSS--SCHHHHHHHHHHHEE
T ss_pred             hhc--cCHHHHHHHHHHHhC
Confidence            776  334567788877765

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.32  E-value=5.3e-12  Score=100.55  Aligned_cols=82  Identities=15%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             CCC--CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------cC-C--CeEEEEcccccccccccC
Q 027945           47 VSN--KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------LE-L--DIDFVQCDIRNLEWRVCS  114 (216)
Q Consensus        47 ~~~--~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~-~--~~~~~~~d~~~~~~~~~~  114 (216)
                      .++  .+|||+|||+|..++.++++|+ +|+++|+++.+++.++.+++.       ++ .  +++++++|+.++..... 
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~-  162 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-  162 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS-
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc-
Confidence            455  7999999999999999998876 899999999887777666542       23 2  68999999988644321 


Q ss_pred             CCcccEEEEcCCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTRK  131 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~~  131 (216)
                       .+||+|++||||....
T Consensus       163 -~~fDvV~lDP~y~~~~  178 (258)
T 2oyr_A          163 -PRPQVVYLDPMFPHKQ  178 (258)
T ss_dssp             -SCCSEEEECCCCCCCC
T ss_pred             -ccCCEEEEcCCCCCcc
Confidence             1399999999997653

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.32  E-value=9e-12  Score=100.63  Aligned_cols=102  Identities=16%  Similarity=0.169  Sum_probs=76.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc------------CCCeEEEEcccccccccccC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------------ELDIDFVQCDIRNLEWRVCS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------~~~~~~~~~d~~~~~~~~~~  114 (216)
                      ..+.+|||+|||+|.++..+++++..+|+++|+|+.+++.|++++ ..            ..+++++.+|+.++....  
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~--  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN--  150 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC--
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhccc--
Confidence            356799999999999999999876679999999999999999998 32            227999999997754322  


Q ss_pred             CCcccEEEEcCCCCCCCCCC--CHHHHHHHHhhcC-CcEEE
Q 027945          115 VGHVDTVVMNPPFGTRKKGV--DMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~~~~~--~~~~l~~~~~~~~-~~~~~  152 (216)
                       ++||+|++|+|........  ...+++.+.+.++ +++++
T Consensus       151 -~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv  190 (281)
T 1mjf_A          151 -RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYV  190 (281)
T ss_dssp             -CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEE
T ss_pred             -CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEE
Confidence             2499999999864322111  4678888888775 33333

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.32  E-value=7.1e-12  Score=98.34  Aligned_cols=91  Identities=9%  Similarity=0.123  Sum_probs=74.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.+...   +++++++|+.+.. .+.+   ||+|++.-.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~~-~~~~---fD~v~~~~~  112 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQ-LPRR---YDNIVLTHV  112 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCC-CSSC---EEEEEEESC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHcC-cCCc---ccEEEEhhH
Confidence            4667899999999999999998766 899999999999999998764   6899999998873 3334   999999887


Q ss_pred             CCCCCCCCCHHHHHHHH-hhcC
Q 027945          127 FGTRKKGVDMDFLSMAL-KVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~-~~~~  147 (216)
                      +++..  .....++++. +.++
T Consensus       113 l~~~~--~~~~~l~~~~~~~Lk  132 (250)
T 2p7i_A          113 LEHID--DPVALLKRINDDWLA  132 (250)
T ss_dssp             GGGCS--SHHHHHHHHHHTTEE
T ss_pred             HHhhc--CHHHHHHHHHHHhcC
Confidence            77663  3357888888 7765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.31  E-value=3e-11  Score=94.03  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCC------CeEEEEeCCHHHHHHHHHHHHhcC-----C-
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA------DQVIAIDIDSDSLELASENAADLE-----L-   96 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~------~~v~~~D~~~~~~~~a~~~~~~~~-----~-   96 (216)
                      .+.+...++..+..  ...++.+|||+|||+|.++..+++...      .+|+++|+++.+++.|+.++..++     . 
T Consensus        63 ~p~~~~~~~~~l~~--~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  140 (227)
T 2pbf_A           63 APHMHALSLKRLIN--VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID  140 (227)
T ss_dssp             CHHHHHHHHHHHTT--TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSST
T ss_pred             ChHHHHHHHHHHHh--hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccC
Confidence            34555555554432  234678999999999999999997632      599999999999999999998876     3 


Q ss_pred             CeEEEEccccccc----ccccCCCcccEEEEcCCCCC
Q 027945           97 DIDFVQCDIRNLE----WRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        97 ~~~~~~~d~~~~~----~~~~~~~~fD~v~~npp~~~  129 (216)
                      +++++.+|+.+..    .....   ||+|+++.+++.
T Consensus       141 ~v~~~~~d~~~~~~~~~~~~~~---fD~I~~~~~~~~  174 (227)
T 2pbf_A          141 NFKIIHKNIYQVNEEEKKELGL---FDAIHVGASASE  174 (227)
T ss_dssp             TEEEEECCGGGCCHHHHHHHCC---EEEEEECSBBSS
T ss_pred             CEEEEECChHhcccccCccCCC---cCEEEECCchHH
Confidence            7999999998854    33334   999999988653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.31  E-value=2.3e-11  Score=95.79  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      .....++..+...   .++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|+++++..+.  +++++++|+.
T Consensus        56 ~~~~~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~  132 (237)
T 3c3y_A           56 PLAGQLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAM  132 (237)
T ss_dssp             HHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             HHHHHHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3455556555443   35679999999999999999975 3 56999999999999999999998887  6999999998


Q ss_pred             ccccccc----CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          107 NLEWRVC----SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       107 ~~~~~~~----~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +......    ..++||+|++|.+     ......+++.+.+.++ ++++++
T Consensus       133 ~~l~~l~~~~~~~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~  179 (237)
T 3c3y_A          133 LALDNLLQGQESEGSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAY  179 (237)
T ss_dssp             HHHHHHHHSTTCTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHhccCCCCCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEE
Confidence            7543210    0234999999865     2345677888887765 444444

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.31  E-value=1.1e-11  Score=98.63  Aligned_cols=105  Identities=14%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      ....++..+...  ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.+..    +++++++|+.+.+. 
T Consensus        36 ~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~-  107 (263)
T 3pfg_A           36 EAADLAALVRRH--SPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSL-  107 (263)
T ss_dssp             HHHHHHHHHHHH--CTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCCC-
T ss_pred             HHHHHHHHHHhh--CCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC----CCEEEECChHHCCc-
Confidence            334444444433  23567999999999999999998765 89999999999999999865    58999999998766 


Q ss_pred             ccCCCcccEEEEcC-CCCCCCC-CCCHHHHHHHHhhcC
Q 027945          112 VCSVGHVDTVVMNP-PFGTRKK-GVDMDFLSMALKVAS  147 (216)
Q Consensus       112 ~~~~~~fD~v~~np-p~~~~~~-~~~~~~l~~~~~~~~  147 (216)
                      ...   ||+|+++. ++++... .....+++++.+.++
T Consensus       108 ~~~---fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~  142 (263)
T 3pfg_A          108 GRR---FSAVTCMFSSIGHLAGQAELDAALERFAAHVL  142 (263)
T ss_dssp             SCC---EEEEEECTTGGGGSCHHHHHHHHHHHHHHTEE
T ss_pred             cCC---cCEEEEcCchhhhcCCHHHHHHHHHHHHHhcC
Confidence            324   99999987 7766532 233466777777765

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.31  E-value=1e-11  Score=106.45  Aligned_cols=83  Identities=14%  Similarity=0.135  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccccccc-ccCCCcccE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR-VCSVGHVDT  120 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-~~~~~~fD~  120 (216)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++|++.+|+ ++.++++|+..+... ...   ||+
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~---FD~  178 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGF---FDR  178 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTC---EEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhcccc---CCE
Confidence            3457889999999999999999965  346999999999999999999999998 799999999876532 224   999


Q ss_pred             EEEcCCCCCC
Q 027945          121 VVMNPPFGTR  130 (216)
Q Consensus       121 v~~npp~~~~  130 (216)
                      |++|||+...
T Consensus       179 Il~DaPCSg~  188 (456)
T 3m4x_A          179 IVVDAPCSGE  188 (456)
T ss_dssp             EEEECCCCCG
T ss_pred             EEECCCCCCc
Confidence            9999997543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.31  E-value=3.2e-12  Score=96.56  Aligned_cols=103  Identities=19%  Similarity=0.154  Sum_probs=74.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .+..+|||+|||+|.+++.++.. +..+++++|+|+.+++.++.|+..+|...++..+|.......    ++||+|++.-
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~----~~~DvVLa~k  123 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYK----GTYDVVFLLK  123 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTT----SEEEEEEEET
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCC----CCcChhhHhh
Confidence            34679999999999999999865 345999999999999999999999988544444666554322    2399999977


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      .+|..+ ... ..+.++.+..+ +.++++..
T Consensus       124 ~LHlL~-~~~-~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          124 MLPVLK-QQD-VNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             CHHHHH-HTT-CCHHHHHHTCEEEEEEEEEE
T ss_pred             HHHhhh-hhH-HHHHHHHHHhCCCCEEEEeC
Confidence            766651 111 12225555554 67777766

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.31  E-value=4.2e-11  Score=93.90  Aligned_cols=83  Identities=13%  Similarity=0.019  Sum_probs=62.0

Q ss_pred             cCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945           44 FGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      +...++.+|||+|||+|..+..+++. + .++|+++|+++.+++.+...++.. .++.++++|+..........++||+|
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I  150 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVL  150 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEEE
Confidence            34668899999999999999999975 3 569999999999876554444332 37999999997643221112359999


Q ss_pred             EEcCCC
Q 027945          122 VMNPPF  127 (216)
Q Consensus       122 ~~npp~  127 (216)
                      ++|.+.
T Consensus       151 ~~d~a~  156 (232)
T 3id6_C          151 YVDIAQ  156 (232)
T ss_dssp             EECCCC
T ss_pred             EecCCC
Confidence            999774

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.31  E-value=4.5e-11  Score=101.67  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHH-------HHHHHhcC--C-C
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELA-------SENAADLE--L-D   97 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a-------~~~~~~~~--~-~   97 (216)
                      .+.+...++..+    ...++.+|||+|||+|.+++.+++. ++.+|+|+|+++.+++.|       +.+++..|  . +
T Consensus       227 ~p~~v~~ml~~l----~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~n  302 (433)
T 1u2z_A          227 LPNFLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN  302 (433)
T ss_dssp             CHHHHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred             cHHHHHHHHHhc----CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCc
Confidence            355666555433    4457889999999999999999975 666899999999999998       88988887  3 7


Q ss_pred             eEEEEcccccc--cc--cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945           98 IDFVQCDIRNL--EW--RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus        98 ~~~~~~d~~~~--~~--~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      ++++++|....  ..  ....   ||+|+++.....   ......++++.+.++ ++.+++.
T Consensus       303 V~~i~gD~~~~~~~~~~~~~~---FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          303 VEFSLKKSFVDNNRVAELIPQ---CDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             EEEEESSCSTTCHHHHHHGGG---CSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eEEEEcCccccccccccccCC---CCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEe
Confidence            89999865432  11  1224   999999855421   123345677777765 4444444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.30  E-value=3.3e-11  Score=99.53  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=78.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+.+|||+|||+|.++..++++ +..+|+++|+|+.+++.|++++...     ..+++++++|+.++.... ..++||+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-AEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-CTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-cCCCccE
Confidence            45689999999999999999987 3569999999999999999998652     227999999998764321 1224999


Q ss_pred             EEEcCCCCCCC-CC-CCHHHHHHHHhhcC-CcEEEE
Q 027945          121 VVMNPPFGTRK-KG-VDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       121 v~~npp~~~~~-~~-~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      |++|++-.... .. ....+++.+.+.++ ++++++
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~  233 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT  233 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            99998632211 11 14678888888876 344433

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.30  E-value=1.4e-11  Score=103.65  Aligned_cols=97  Identities=25%  Similarity=0.307  Sum_probs=78.7

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhc-----C----CCeEEEEcccccc------
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADL-----E----LDIDFVQCDIRNL------  108 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~-----~----~~~~~~~~d~~~~------  108 (216)
                      ..++.+|||+|||+|..+..+++.  ...+|+|+|+++.+++.|+.+++.+     |    .+++++++|+.+.      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            346789999999999999999975  3559999999999999999998754     3    3799999999886      


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +....+   ||+|+++..++...  .....++++.+.++
T Consensus       161 ~~~~~~---fD~V~~~~~l~~~~--d~~~~l~~~~r~Lk  194 (383)
T 4fsd_A          161 GVPDSS---VDIVISNCVCNLST--NKLALFKEIHRVLR  194 (383)
T ss_dssp             CCCTTC---EEEEEEESCGGGCS--CHHHHHHHHHHHEE
T ss_pred             CCCCCC---EEEEEEccchhcCC--CHHHHHHHHHHHcC
Confidence            443334   99999999988763  34577888888775

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.30  E-value=4.5e-11  Score=94.00  Aligned_cols=101  Identities=11%  Similarity=0.091  Sum_probs=76.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccC---------
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCS---------  114 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~---------  114 (216)
                      ++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+.+++.++.  +++++++|+.+.......         
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            6679999999999999999976 3 46999999999999999999998887  499999998774321100         


Q ss_pred             ----C-CcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          115 ----V-GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       115 ----~-~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                          . ++||+|+++..     ......+++.+.+.++ ++++++
T Consensus       140 ~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~  179 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPGGLLIA  179 (239)
T ss_dssp             TTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEE
Confidence                1 34999999854     2233467777777765 344433

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=1.5e-11  Score=96.84  Aligned_cols=98  Identities=17%  Similarity=0.124  Sum_probs=78.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccC--CCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCS--VGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++.++..  .+++++++|+.+.......  ...||+|+++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA--ANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC--TTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc--cCceEEECcccccccccccccccCccEEEEc
Confidence            4667999999999999999998776 999999999999999998732  2699999999886543210  0128999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ..++.........+++++.+.++
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~Lk  154 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLG  154 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHT
T ss_pred             chhhcCCHHHHHHHHHHHHHHcC
Confidence            99888865556677777777665

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.30  E-value=3.7e-12  Score=103.38  Aligned_cols=101  Identities=17%  Similarity=0.161  Sum_probs=72.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC-------------------------------
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-------------------------------   95 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-------------------------------   95 (216)
                      ++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|+.+++..+                               
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            6789999999999999999976 56699999999999999999876543                               


Q ss_pred             ----------------------------CCeEEEEcccccccccc--cCCCcccEEEEcCCCCCC----CCCCCHHHHHH
Q 027945           96 ----------------------------LDIDFVQCDIRNLEWRV--CSVGHVDTVVMNPPFGTR----KKGVDMDFLSM  141 (216)
Q Consensus        96 ----------------------------~~~~~~~~d~~~~~~~~--~~~~~fD~v~~npp~~~~----~~~~~~~~l~~  141 (216)
                                                  .+++++++|+.......  ...++||+|++....++.    .......++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        26899999998654110  012349999997765322    11233457777


Q ss_pred             HHhhcCC
Q 027945          142 ALKVASQ  148 (216)
Q Consensus       142 ~~~~~~~  148 (216)
                      +.+.+++
T Consensus       206 ~~~~Lkp  212 (292)
T 3g07_A          206 IYRHLRP  212 (292)
T ss_dssp             HHHHEEE
T ss_pred             HHHHhCC
Confidence            7777763

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.30  E-value=7.2e-11  Score=96.36  Aligned_cols=106  Identities=12%  Similarity=0.113  Sum_probs=76.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...     ..+++++.+|+.++.... ..++||+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-PDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-CTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-cCCceeE
Confidence            45689999999999999999987 4569999999999999999987421     227999999998876431 1224999


Q ss_pred             EEEcCCCCCCCCCC--CHHHHHHHHhhcC-CcEEEE
Q 027945          121 VVMNPPFGTRKKGV--DMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       121 v~~npp~~~~~~~~--~~~~l~~~~~~~~-~~~~~~  153 (216)
                      |++|++........  ...+++.+.+.++ ++++++
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~  208 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCN  208 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            99998865432111  2578888888776 344433

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.29  E-value=2.7e-11  Score=94.44  Aligned_cols=87  Identities=22%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~  105 (216)
                      .|....+...++...     ..++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++.+.    .+++++++|+
T Consensus        31 ~~~~~~l~~~~~~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~  100 (226)
T 3m33_A           31 GPDPELTFDLWLSRL-----LTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA----PHADVYEWNG  100 (226)
T ss_dssp             SSCTTHHHHHHHHHH-----CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC----TTSEEEECCS
T ss_pred             CCCHHHHHHHHHHhc-----CCCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC----CCceEEEcch
Confidence            344444544444332     24678999999999999999998755 9999999999999999982    2689999999


Q ss_pred             cc-cccc-ccCCCcccEEEEcC
Q 027945          106 RN-LEWR-VCSVGHVDTVVMNP  125 (216)
Q Consensus       106 ~~-~~~~-~~~~~~fD~v~~np  125 (216)
                      .+ .+.. ...   ||+|++++
T Consensus       101 ~~~~~~~~~~~---fD~v~~~~  119 (226)
T 3m33_A          101 KGELPAGLGAP---FGLIVSRR  119 (226)
T ss_dssp             CSSCCTTCCCC---EEEEEEES
T ss_pred             hhccCCcCCCC---EEEEEeCC
Confidence            54 4433 334   99999973

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.29  E-value=2.4e-11  Score=104.95  Aligned_cols=79  Identities=11%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccc-cccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW-RVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~~~~~fD~v~~  123 (216)
                      ++.+|||+|||+|..+..+++.  +...|+++|+++.+++.+++|++.+|+ +++++++|+..+.. ....   ||+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~---fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEM---FDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTC---EEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhcccc---CCEEEE
Confidence            7789999999999999999975  246999999999999999999999988 79999999988654 2224   999999


Q ss_pred             cCCCCC
Q 027945          124 NPPFGT  129 (216)
Q Consensus       124 npp~~~  129 (216)
                      |||+..
T Consensus       194 D~PcSg  199 (479)
T 2frx_A          194 DAPCSG  199 (479)
T ss_dssp             ECCCCC
T ss_pred             CCCcCC
Confidence            999854

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.28  E-value=1.7e-11  Score=92.60  Aligned_cols=93  Identities=18%  Similarity=0.257  Sum_probs=73.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+. +++++|+++.+++.++.+..    +++++++|+.+.+.....   ||+|+++++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~~~~~~~---~D~i~~~~~  116 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP----EARWVVGDLSVDQISETD---FDLIVSAGN  116 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TSEEEECCTTTSCCCCCC---EEEEEECCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC----CCcEEEcccccCCCCCCc---eeEEEECCc
Confidence            4678999999999999999998754 99999999999999999874    478999999886554334   999999954


Q ss_pred             -CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 -FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 -~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       ++.........+++.+.+.++
T Consensus       117 ~~~~~~~~~~~~~l~~~~~~l~  138 (195)
T 3cgg_A          117 VMGFLAEDGREPALANIHRALG  138 (195)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEE
T ss_pred             HHhhcChHHHHHHHHHHHHHhC
Confidence             443322333567777777765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=6.5e-12  Score=100.99  Aligned_cols=92  Identities=21%  Similarity=0.278  Sum_probs=74.4

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.++.+..    +++++++|+..++.. .+   ||+|+++
T Consensus        54 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~-~~---fD~v~~~  124 (279)
T 3ccf_A           54 NPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNYP----HLHFDVADARNFRVD-KP---LDAVFSN  124 (279)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT----TSCEEECCTTTCCCS-SC---EEEEEEE
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhCC----CCEEEECChhhCCcC-CC---cCEEEEc
Confidence            4457789999999999999999984 4599999999999999998862    588999999887653 24   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ..+++..  .....++++.+.++
T Consensus       125 ~~l~~~~--d~~~~l~~~~~~Lk  145 (279)
T 3ccf_A          125 AMLHWVK--EPEAAIASIHQALK  145 (279)
T ss_dssp             SCGGGCS--CHHHHHHHHHHHEE
T ss_pred             chhhhCc--CHHHHHHHHHHhcC
Confidence            8887653  33467777777765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.28  E-value=4.2e-11  Score=92.61  Aligned_cols=98  Identities=14%  Similarity=-0.011  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.+.+.++.. .++.++++|+..........++||+|++
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccccceeEEEE
Confidence            3457789999999999999999976 3459999999999887776666543 2688889998764110001134999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |.+.    ......+++++.+.++
T Consensus       133 ~~~~----~~~~~~~l~~~~r~Lk  152 (210)
T 1nt2_A          133 DIAQ----KNQIEILKANAEFFLK  152 (210)
T ss_dssp             CCCS----TTHHHHHHHHHHHHEE
T ss_pred             eccC----hhHHHHHHHHHHHHhC
Confidence            8531    1112234677776654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.28  E-value=5.9e-11  Score=92.32  Aligned_cols=95  Identities=20%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhcCC------CeEEE
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL------DIDFV  101 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~  101 (216)
                      +.....++..+..  ...++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++.++..++.      +++++
T Consensus        61 p~~~~~~l~~l~~--~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~  138 (226)
T 1i1n_A           61 PHMHAYALELLFD--QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  138 (226)
T ss_dssp             HHHHHHHHHHTTT--TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             HHHHHHHHHHHHh--hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence            4455555544321  1346789999999999999999975 43 5999999999999999999987652      79999


Q ss_pred             EcccccccccccCCCcccEEEEcCCCCC
Q 027945          102 QCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       102 ~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      ++|+.........   ||+|+++.++..
T Consensus       139 ~~d~~~~~~~~~~---fD~i~~~~~~~~  163 (226)
T 1i1n_A          139 VGDGRMGYAEEAP---YDAIHVGAAAPV  163 (226)
T ss_dssp             ESCGGGCCGGGCC---EEEEEECSBBSS
T ss_pred             ECCcccCcccCCC---cCEEEECCchHH
Confidence            9999865544434   999999988643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.28  E-value=3.4e-11  Score=94.44  Aligned_cols=116  Identities=15%  Similarity=0.116  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      ......++..+...   .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+.+++.++.  +++++++|+
T Consensus        57 ~~~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  133 (232)
T 3cbg_A           57 SPEQAQFLGLLISL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA  133 (232)
T ss_dssp             CHHHHHHHHHHHHH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             CHHHHHHHHHHHHh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            34445555554432   25679999999999999999975 2 45999999999999999999988877  599999998


Q ss_pred             cccccccc-CC--CcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          106 RNLEWRVC-SV--GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       106 ~~~~~~~~-~~--~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      .+...... ..  ++||+|++|.+     ......+++.+.+.++ ++++++
T Consensus       134 ~~~l~~l~~~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~  180 (232)
T 3cbg_A          134 LATLEQLTQGKPLPEFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVI  180 (232)
T ss_dssp             HHHHHHHHTSSSCCCEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCCcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEE
Confidence            76433210 01  34999999876     2345677888888776 344443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.28  E-value=2.3e-11  Score=107.30  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=68.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ++.+|||+|||.|.++..+|+.|+ +|+|+|+++.+++.|+..+...+. ++++.++++.++.... ..++||+|++--.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~v~~~e~  143 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAAL-EEGEFDLAIGLSV  143 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHC-CTTSCSEEEEESC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhc-cCCCccEEEECcc
Confidence            557999999999999999999887 899999999999999999988774 8999999998874332 2234999999766


Q ss_pred             CCCC
Q 027945          127 FGTR  130 (216)
Q Consensus       127 ~~~~  130 (216)
                      +++.
T Consensus       144 ~ehv  147 (569)
T 4azs_A          144 FHHI  147 (569)
T ss_dssp             HHHH
T ss_pred             hhcC
Confidence            6554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.28  E-value=8.5e-11  Score=96.63  Aligned_cols=99  Identities=12%  Similarity=0.155  Sum_probs=75.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+.+|||+|||+|.++..++++ +..+|+++|+|+.+++.|++++...     ..+++++++|+.+.....  .++||+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fDv  192 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYDV  192 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc--CCCceE
Confidence            35679999999999999999987 4679999999999999999998752     227999999998754321  124999


Q ss_pred             EEEcCCCCCC-CCCC-CHHHHHHHHhhcC
Q 027945          121 VVMNPPFGTR-KKGV-DMDFLSMALKVAS  147 (216)
Q Consensus       121 v~~npp~~~~-~~~~-~~~~l~~~~~~~~  147 (216)
                      |++|++-... .... ...+++.+.+.++
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lk  221 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALK  221 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEE
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcC
Confidence            9999842211 1111 2678888888765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.27  E-value=4.1e-11  Score=102.28  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++.|++.+|.+++++++|+....... ..++||+|++
T Consensus       243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~-~~~~fD~Vl~  321 (429)
T 1sqg_A          243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC-GEQQFDRILL  321 (429)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH-TTCCEEEEEE
T ss_pred             CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhc-ccCCCCEEEE
Confidence            34677899999999999999999764 369999999999999999999999888899999998875321 1124999999


Q ss_pred             cCCCCCC
Q 027945          124 NPPFGTR  130 (216)
Q Consensus       124 npp~~~~  130 (216)
                      |||+...
T Consensus       322 D~Pcsg~  328 (429)
T 1sqg_A          322 DAPCSAT  328 (429)
T ss_dssp             ECCCCCG
T ss_pred             eCCCCcc
Confidence            9998653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.26  E-value=1.4e-11  Score=105.75  Aligned_cols=85  Identities=14%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++.|++.+|. +++++++|+.+..... ..++||+|
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~fD~V  334 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII-GEEVADKV  334 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSS-CSSCEEEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhh-ccCCCCEE
Confidence            4467789999999999999999975 3 36999999999999999999999988 7999999998865321 11249999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++|||+...
T Consensus       335 l~D~Pcsg~  343 (450)
T 2yxl_A          335 LLDAPCTSS  343 (450)
T ss_dssp             EEECCCCCG
T ss_pred             EEcCCCCCC
Confidence            999998544

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.25  E-value=3.4e-11  Score=97.96  Aligned_cols=99  Identities=12%  Similarity=0.119  Sum_probs=73.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHh--c---CCCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD--L---ELDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~--~---~~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+.+|||+|||+|.++..++++ +..+|+++|+|+.+++.|++++..  .   ..+++++++|+.++....  .++||+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~  166 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF--KNEFDV  166 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC--SSCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCceE
Confidence            35579999999999999999987 567999999999999999999854  1   227999999998754321  224999


Q ss_pred             EEEcCCCC-CCC--CCCCHHHHHHHHhhcC
Q 027945          121 VVMNPPFG-TRK--KGVDMDFLSMALKVAS  147 (216)
Q Consensus       121 v~~npp~~-~~~--~~~~~~~l~~~~~~~~  147 (216)
                      |++|+|.. ...  .-....+++.+.+.++
T Consensus       167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lk  196 (296)
T 1inl_A          167 IIIDSTDPTAGQGGHLFTEEFYQACYDALK  196 (296)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEE
T ss_pred             EEEcCCCcccCchhhhhHHHHHHHHHHhcC
Confidence            99998743 111  1123678888887765

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.25  E-value=1.1e-11  Score=97.33  Aligned_cols=90  Identities=19%  Similarity=0.280  Sum_probs=73.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc--cccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL--EWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++.+       ++++.+|+.+.  +...++   ||+|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~---fD~i~~~  108 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKSLPDKY---LDGVMIS  108 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHTSCTTC---BSEEEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-------cceeeccHHHHhhhcCCCC---eeEEEEC
Confidence            3568999999999999999998766 899999999999999877       68899998875  333334   9999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      -.+++........+++++.+.++
T Consensus       109 ~~l~~~~~~~~~~~l~~~~~~Lk  131 (240)
T 3dli_A          109 HFVEHLDPERLFELLSLCYSKMK  131 (240)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHBC
T ss_pred             CchhhCCcHHHHHHHHHHHHHcC
Confidence            88877754455678888877765

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.25  E-value=6.7e-11  Score=92.51  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=79.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.+++.+.  +...++++|+|+.+++.++.++..++.+..+.++|....+... .   +|+|+++-.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~---~DvvLllk~  177 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-A---GDLALIFKL  177 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-B---CSEEEEESC
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-C---cchHHHHHH
Confidence            456799999999999999988  6669999999999999999999999888999999998876665 5   999999866


Q ss_pred             CCCCCCCCCHHHHHHHHhh-cCCcEEEEec
Q 027945          127 FGTRKKGVDMDFLSMALKV-ASQAVYSLHK  155 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~  155 (216)
                      ++.......-..+ +++.. ..+.++++..
T Consensus       178 lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          178 LPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            6554211111222 44444 4467777766

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.24  E-value=1e-10  Score=90.38  Aligned_cols=92  Identities=18%  Similarity=0.117  Sum_probs=72.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++.+     .++++..+|+.+..... ....+||+|+++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECc
Confidence            3568999999999999999998765 999999999999999988     25678888887762111 1222499999998


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++   ......+++++.+.++
T Consensus       125 ~l~---~~~~~~~l~~~~~~L~  143 (227)
T 3e8s_A          125 ALL---HQDIIELLSAMRTLLV  143 (227)
T ss_dssp             CCC---SSCCHHHHHHHHHTEE
T ss_pred             hhh---hhhHHHHHHHHHHHhC
Confidence            888   2455678888887765

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.23  E-value=8.6e-11  Score=95.91  Aligned_cols=99  Identities=10%  Similarity=0.118  Sum_probs=72.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHh--c---CCCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAAD--L---ELDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~--~---~~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+.+|||+|||+|.++..+++++ ..+|+++|+|+.+++.|++++..  .   ..+++++++|+.++...  ..++||+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~--~~~~fD~  171 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFDV  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh--CCCCceE
Confidence            456899999999999999999874 57999999999999999999865  1   23799999999875432  1234999


Q ss_pred             EEEcCCCCCCCCC--CCHHHHHHHHhhcC
Q 027945          121 VVMNPPFGTRKKG--VDMDFLSMALKVAS  147 (216)
Q Consensus       121 v~~npp~~~~~~~--~~~~~l~~~~~~~~  147 (216)
                      |++|++.......  ....+++.+.+.++
T Consensus       172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lk  200 (304)
T 2o07_A          172 IITDSSDPMGPAESLFKESYYQLMKTALK  200 (304)
T ss_dssp             EEEECC-----------CHHHHHHHHHEE
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHhccC
Confidence            9999886432111  12467777777765

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.23  E-value=2.6e-10  Score=92.10  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      .++.+|||+|||+|..+..++++. ..+|+++|+|+.+++.|++++...+     .+++++++|+.+.....  .++||+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~  154 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYDV  154 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCCceE
Confidence            456899999999999999999874 5799999999999999999987542     37999999998764321  224999


Q ss_pred             EEEcCCCCCCCCCC--CHHHHHHHHhhcC
Q 027945          121 VVMNPPFGTRKKGV--DMDFLSMALKVAS  147 (216)
Q Consensus       121 v~~npp~~~~~~~~--~~~~l~~~~~~~~  147 (216)
                      |++|++........  ...+++.+.+.++
T Consensus       155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~  183 (283)
T 2i7c_A          155 IIVDSSDPIGPAETLFNQNFYEKIYNALK  183 (283)
T ss_dssp             EEEECCCTTTGGGGGSSHHHHHHHHHHEE
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHHhcC
Confidence            99998654322111  2678888888876

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.23  E-value=1.1e-10  Score=92.82  Aligned_cols=90  Identities=19%  Similarity=0.208  Sum_probs=70.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++.+...     .++++|+.+.+...+.   ||+|++..+.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~-----~~~~~d~~~~~~~~~~---fD~v~~~~~~  124 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFPSGA---FEAVLALGDV  124 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCCSCTTC---EEEEEECSSH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC-----CEEECcHHHCCCCCCC---EEEEEEcchh
Confidence            678999999999999999998765 999999999999999988652     2789999887654444   9999997544


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+... .....++++.+.++
T Consensus       125 ~~~~~-~~~~~l~~~~~~Lk  143 (260)
T 2avn_A          125 LSYVE-NKDKAFSEIRRVLV  143 (260)
T ss_dssp             HHHCS-CHHHHHHHHHHHEE
T ss_pred             hhccc-cHHHHHHHHHHHcC
Confidence            32211 25667888887765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.23  E-value=4.2e-11  Score=98.16  Aligned_cols=105  Identities=12%  Similarity=0.115  Sum_probs=74.4

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ..+.+|||+|||+|..+..++++ +..+|+++|+|+.+++.|++++...     ..+++++.+|+.+....  ..++||+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  184 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDV  184 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceE
Confidence            35579999999999999999987 4579999999999999999998653     23799999999875432  1234999


Q ss_pred             EEEcCCCCCCCC-CCC-HHHHHHHHhhcC-CcEEEE
Q 027945          121 VVMNPPFGTRKK-GVD-MDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       121 v~~npp~~~~~~-~~~-~~~l~~~~~~~~-~~~~~~  153 (216)
                      |++|++...... ... ..+++.+.+.++ ++++++
T Consensus       185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~  220 (314)
T 2b2c_A          185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS  220 (314)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence            999986432211 112 577888887765 344433

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.23  E-value=2.3e-10  Score=92.35  Aligned_cols=101  Identities=10%  Similarity=-0.018  Sum_probs=70.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-----------------CC-------------
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------------EL-------------   96 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----------------~~-------------   96 (216)
                      .++.+|||+|||+|.....++..+..+|+|+|+++.+++.|+++++..                 +.             
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            467899999999999655555544559999999999999998866431                 10             


Q ss_pred             -CeEEEEccccc-ccccc--cCCCcccEEEEcCCCCCCCCC--CCHHHHHHHHhhcC
Q 027945           97 -DIDFVQCDIRN-LEWRV--CSVGHVDTVVMNPPFGTRKKG--VDMDFLSMALKVAS  147 (216)
Q Consensus        97 -~~~~~~~d~~~-~~~~~--~~~~~fD~v~~npp~~~~~~~--~~~~~l~~~~~~~~  147 (216)
                       .++++.+|+.+ .+...  ...++||+|+++..+++....  .....++++.+.++
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk  206 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR  206 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC
Confidence             14677889887 43221  122359999998887664332  34567788888775

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.22  E-value=6.1e-11  Score=92.48  Aligned_cols=97  Identities=15%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CC------CeEEEEeCCHHHHHHHHHHHHhcC-----C
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLE-----L   96 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~------~~v~~~D~~~~~~~~a~~~~~~~~-----~   96 (216)
                      .+.+...++..+..  ...++.+|||+|||+|.++..+++. +.      .+|+++|+++.+++.|++++...+     .
T Consensus        67 ~p~~~~~~~~~l~~--~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~  144 (227)
T 1r18_A           67 APHMHAFALEYLRD--HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS  144 (227)
T ss_dssp             CHHHHHHHHHHTTT--TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHh--hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC
Confidence            45555655554432  2346789999999999999999874 32      599999999999999999987765     2


Q ss_pred             -CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           97 -DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        97 -~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                       +++++.+|+.+.......   ||+|+++.+.+..
T Consensus       145 ~~v~~~~~d~~~~~~~~~~---fD~I~~~~~~~~~  176 (227)
T 1r18_A          145 GQLLIVEGDGRKGYPPNAP---YNAIHVGAAAPDT  176 (227)
T ss_dssp             TSEEEEESCGGGCCGGGCS---EEEEEECSCBSSC
T ss_pred             CceEEEECCcccCCCcCCC---ccEEEECCchHHH
Confidence             799999999874333234   9999999886543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.21  E-value=4.2e-11  Score=88.95  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+. +++++|+++.+++.++.+.    .+++++.+|   .+.....   ||+|+++..
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~v~~~~~d---~~~~~~~---~D~v~~~~~   84 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF----DSVITLSDP---KEIPDNS---VDFILFANS   84 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC----TTSEEESSG---GGSCTTC---EEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC----CCcEEEeCC---CCCCCCc---eEEEEEccc
Confidence            4677999999999999999998765 9999999999999999982    268999999   2333334   999999988


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..  ....+++++.+.++
T Consensus        85 l~~~~--~~~~~l~~~~~~L~  103 (170)
T 3i9f_A           85 FHDMD--DKQHVISEVKRILK  103 (170)
T ss_dssp             STTCS--CHHHHHHHHHHHEE
T ss_pred             hhccc--CHHHHHHHHHHhcC
Confidence            87763  34567787777765

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.21  E-value=2.1e-11  Score=97.34  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC----------------------------
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----------------------------   96 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----------------------------   96 (216)
                      ...++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++++.+..                            
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            3457789999999999988887777766899999999999999988755321                            


Q ss_pred             --CeE-EEEccccccc-ccccCCCcccEEEEcCCCCCCC--CCCCHHHHHHHHhhcC
Q 027945           97 --DID-FVQCDIRNLE-WRVCSVGHVDTVVMNPPFGTRK--KGVDMDFLSMALKVAS  147 (216)
Q Consensus        97 --~~~-~~~~d~~~~~-~~~~~~~~fD~v~~npp~~~~~--~~~~~~~l~~~~~~~~  147 (216)
                        +++ ++++|+.+.. ......++||+|+++-.+++..  .......++++.+.++
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK  188 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK  188 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC
Confidence              133 8899998742 2111123499999987665421  1223456777777765

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.20  E-value=1.5e-10  Score=90.45  Aligned_cols=93  Identities=18%  Similarity=0.143  Sum_probs=71.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE-cC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM-NP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~-np  125 (216)
                      .++.+|||+|||+|.++..+++.+. +++++|+++.+++.|+.+..    +++++++|+.+.+. ...   ||+|++ ..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~----~~~~~~~d~~~~~~-~~~---~D~v~~~~~  109 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP----DATLHQGDMRDFRL-GRK---FSAVVSMFS  109 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCCC-SSC---EEEEEECTT
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC----CCEEEECCHHHccc-CCC---CcEEEEcCc
Confidence            4668999999999999999998765 99999999999999998853    58999999988765 324   999995 33


Q ss_pred             CCCCCCC-CCCHHHHHHHHhhcCC
Q 027945          126 PFGTRKK-GVDMDFLSMALKVASQ  148 (216)
Q Consensus       126 p~~~~~~-~~~~~~l~~~~~~~~~  148 (216)
                      .+++... ......++++.+.+++
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~L~p  133 (239)
T 3bxo_A          110 SVGYLKTTEELGAAVASFAEHLEP  133 (239)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHTEEE
T ss_pred             hHhhcCCHHHHHHHHHHHHHhcCC
Confidence            4444422 3345677777777653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.19  E-value=2.7e-11  Score=94.67  Aligned_cols=99  Identities=20%  Similarity=0.245  Sum_probs=73.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCC-HHHHHHH---HHHHHhcCC-CeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDID-SDSLELA---SENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~-~~~~~~a---~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+| +.+++.|   ++++...+. +++++++|+..++...  .+.+|.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~--~d~v~~  100 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL--KNIADS  100 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG--TTCEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhc--cCeEEE
Confidence            36779999999999999999954 45589999999 6666665   888877777 7999999999875432  134889


Q ss_pred             EEEcCCCCCC---CCCCCHHHHHHHHhhcC
Q 027945          121 VVMNPPFGTR---KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       121 v~~npp~~~~---~~~~~~~~l~~~~~~~~  147 (216)
                      |.+++|+...   .......+++++.+.++
T Consensus       101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~Lk  130 (225)
T 3p2e_A          101 ISILFPWGTLLEYVIKPNRDILSNVADLAK  130 (225)
T ss_dssp             EEEESCCHHHHHHHHTTCHHHHHHHHTTEE
T ss_pred             EEEeCCCcHHhhhhhcchHHHHHHHHHhcC
Confidence            9999886542   01123456777777765

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.19  E-value=9.5e-11  Score=86.90  Aligned_cols=89  Identities=20%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc--------ccccCC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--------WRVCSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~  115 (216)
                      ..++.+|||+|||+|.++..+++. + ..+++++|+++ +++.         .+++++++|+.+.+        ..... 
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~-   88 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDSK-   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTCC-
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCCc-
Confidence            356779999999999999999986 4 36999999998 6533         26899999998864        33224 


Q ss_pred             CcccEEEEcCCCCCCCCCC---------CHHHHHHHHhhcC
Q 027945          116 GHVDTVVMNPPFGTRKKGV---------DMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~npp~~~~~~~~---------~~~~l~~~~~~~~  147 (216)
                        ||+|++|+|++......         ....++.+.+.++
T Consensus        89 --~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  127 (180)
T 1ej0_A           89 --VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA  127 (180)
T ss_dssp             --EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             --eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC
Confidence              99999999987652210         0456666666655

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.18  E-value=1.1e-10  Score=95.80  Aligned_cols=99  Identities=17%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHh--c----CCCeEEEEcccccccccccCCCccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD--L----ELDIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~--~----~~~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      ..+.+|||+|||+|..+..++++ +..+|+++|+|+.+++.|++++..  .    ..+++++++|+.++...  ..++||
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD  153 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERYD  153 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--cCCCcc
Confidence            35679999999999999999987 466999999999999999998864  1    23799999999875432  123499


Q ss_pred             EEEEcCCCCC---CC-CC-CCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGT---RK-KG-VDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~---~~-~~-~~~~~l~~~~~~~~  147 (216)
                      +|++|++.+.   .. .. ....+++.+.+.++
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk  186 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN  186 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcC
Confidence            9999988654   11 11 14678888888775

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.18  E-value=4.6e-11  Score=94.33  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ...+|||+|||+|.+++.++.. +..+++++|+|+.+++.++.|+..+|+...+.+.|.....+.. .   +|+++++-.
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~-~---~DvaL~lkt  207 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDE-P---ADVTLLLKT  207 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCS-C---CSEEEETTC
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCC-C---cchHHHHHH
Confidence            4679999999999999999976 6779999999999999999999999999999999998766554 4   999999877


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      ++.......-.-+ +++.... +.++++...
T Consensus       208 i~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          208 LPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             HHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             HHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            6665322222333 4555544 788877666

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.17  E-value=5.5e-11  Score=94.37  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC----------------------------
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----------------------------   96 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----------------------------   96 (216)
                      ...++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.+++++...+.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            3456789999999999999999987656999999999999999998876431                            


Q ss_pred             --Ce-EEEEcccccccc-cccCCCcccEEEEcCCCCCCCCC--CCHHHHHHHHhhcC
Q 027945           97 --DI-DFVQCDIRNLEW-RVCSVGHVDTVVMNPPFGTRKKG--VDMDFLSMALKVAS  147 (216)
Q Consensus        97 --~~-~~~~~d~~~~~~-~~~~~~~fD~v~~npp~~~~~~~--~~~~~l~~~~~~~~  147 (216)
                        ++ +++++|+.+... .....++||+|+++..++.....  .....++++.+.++
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk  189 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK  189 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC
Confidence              17 899999988643 22111349999998766532212  34466777777765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.14  E-value=1e-09  Score=88.15  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             CCCEEEEecCCc---chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc--------ccCC
Q 027945           48 SNKVVADFGCGC---GTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR--------VCSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~---G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~  115 (216)
                      ...+|||+|||+   |.++..+.+. +..+|+++|+|+.+++.|+.++...+ +++++++|+.+....        .-..
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~-~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDP-NTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCT-TEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCC-CeEEEEeeCCCchhhhccchhhccCCC
Confidence            447999999999   9887766654 34699999999999999999985432 799999999864211        0001


Q ss_pred             CcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          116 GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+||+|+++..+++.........++++.+.++
T Consensus       156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~  187 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALA  187 (274)
T ss_dssp             TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSC
T ss_pred             CCCEEEEEechhhhCCcHHHHHHHHHHHHhCC
Confidence            13999999999988765556678888888765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.14  E-value=2.6e-10  Score=93.82  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .+++.|+.++...+.  +++++.+|+.+.+... .   ||+|++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~---~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGN-D---YDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS-C---EEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCC-C---CcEEEE
Confidence            56789999999999999999976 34599999999 999999999988776  5999999998764433 3   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .-+++..........++++.+.++
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~  262 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALA  262 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCC
Confidence            777665533344567777777765

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.13  E-value=3.8e-10  Score=94.31  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=77.5

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+.++...+.  +++++.+|+.+.. +. .   ||+|
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~---~D~v  252 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-PV-T---ADVV  252 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SC-C---EEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC-CC-C---CCEE
Confidence            34567899999999999999999763 459999999 9999999999988776  6999999998632 22 3   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..++..........++++.+.++
T Consensus       253 ~~~~vl~~~~~~~~~~~l~~~~~~L~  278 (374)
T 1qzz_A          253 LLSFVLLNWSDEDALTILRGCVRALE  278 (374)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             EEeccccCCCHHHHHHHHHHHHHhcC
Confidence            99888876543333467888877765

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.13  E-value=2.1e-10  Score=92.75  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             HHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEE-EEccccccccccc
Q 027945           36 MLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDF-VQCDIRNLEWRVC  113 (216)
Q Consensus        36 ~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~d~~~~~~~~~  113 (216)
                      .|..++..+.. .++.+|||+|||||.++..++++|..+|+|+|+++.|++.+.++..    ++.. ...|+.......-
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~----rv~~~~~~ni~~l~~~~l  147 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD----RVRSMEQYNFRYAEPVDF  147 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT----TEEEECSCCGGGCCGGGC
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----ccceecccCceecchhhC
Confidence            44455555443 4678999999999999999998887899999999999988544321    2322 2344443332211


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ....||+|++|-.|+..     ...+.++.+.++
T Consensus       148 ~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLk  176 (291)
T 3hp7_A          148 TEGLPSFASIDVSFISL-----NLILPALAKILV  176 (291)
T ss_dssp             TTCCCSEEEECCSSSCG-----GGTHHHHHHHSC
T ss_pred             CCCCCCEEEEEeeHhhH-----HHHHHHHHHHcC
Confidence            11139999999988754     344555555543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.12  E-value=6.1e-10  Score=92.70  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=81.5

Q ss_pred             HHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCC
Q 027945           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~  115 (216)
                      .++..+...++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|+++++..+.  +++++.+|+.+.+...   
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---  256 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE---  256 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC---
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC---
Confidence            3344444456789999999999999999976 3459999999 9999999999988776  5999999998875443   


Q ss_pred             CcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          116 GHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                        +|+|++...++...+......++++.+.++
T Consensus       257 --~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~  286 (359)
T 1x19_A          257 --ADAVLFCRILYSANEQLSTIMCKKAFDAMR  286 (359)
T ss_dssp             --CSEEEEESCGGGSCHHHHHHHHHHHHTTCC
T ss_pred             --CCEEEEechhccCCHHHHHHHHHHHHHhcC
Confidence              699999888876544335667888887765

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.12  E-value=1.1e-09  Score=91.57  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=81.2

Q ss_pred             HHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccC
Q 027945           38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCS  114 (216)
Q Consensus        38 ~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~  114 (216)
                      ..+...+...+..+|||+|||+|..+..+++. +..+++++|+ +.+++.|+.++...++  +++++.+|+.+ +.+. .
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~-~  268 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD-G  268 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS-S
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCC-C
Confidence            33444444456789999999999999999976 4559999999 9999999999988776  79999999984 3332 4


Q ss_pred             CCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          115 VGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                         ||+|++.-.++...+......++++.+.++
T Consensus       269 ---~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~  298 (369)
T 3gwz_A          269 ---ADVYLIKHVLHDWDDDDVVRILRRIATAMK  298 (369)
T ss_dssp             ---CSEEEEESCGGGSCHHHHHHHHHHHHTTCC
T ss_pred             ---ceEEEhhhhhccCCHHHHHHHHHHHHHHcC
Confidence               999999888876644444467888887765

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.10  E-value=7.5e-10  Score=84.31  Aligned_cols=86  Identities=21%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           33 ASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        33 ~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      +...|.++...+.. .++.+|||+|||+|..+..++++ ..+|+|+|+++..          .-.+++++++|+.+....
T Consensus         9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~----------~~~~v~~~~~D~~~~~~~   77 (191)
T 3dou_A            9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME----------EIAGVRFIRCDIFKETIF   77 (191)
T ss_dssp             HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC----------CCTTCEEEECCTTSSSHH
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc----------cCCCeEEEEccccCHHHH
Confidence            44555666655543 46789999999999999999987 5599999999741          011689999999875421


Q ss_pred             c------c--CCCcccEEEEcCCCCC
Q 027945          112 V------C--SVGHVDTVVMNPPFGT  129 (216)
Q Consensus       112 ~------~--~~~~fD~v~~npp~~~  129 (216)
                      .      .  ..++||+|++|++...
T Consensus        78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~  103 (191)
T 3dou_A           78 DDIDRALREEGIEKVDDVVSDAMAKV  103 (191)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECCCCCC
T ss_pred             HHHHHHhhcccCCcceEEecCCCcCC
Confidence            1      0  0014999999987543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.10  E-value=1e-09  Score=86.22  Aligned_cols=95  Identities=17%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc---cccccCCCccc
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL---EWRVCSVGHVD  119 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~fD  119 (216)
                      ++.+|||+|||+|..+..+++.     +..+|+++|+++.+++.|+.    ...+++++++|+.+.   ....  ..+||
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~~~l~~~~--~~~fD  154 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDLTTFEHLR--EMAHP  154 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCSGGGGGGS--SSCSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhHHHHHhhc--cCCCC
Confidence            4579999999999999999975     35699999999999988872    123799999999885   2221  12499


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHh-hcC-CcEEEE
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALK-VAS-QAVYSL  153 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~-~~~-~~~~~~  153 (216)
                      +|+++.. +    ......+.++.+ .++ ++.+++
T Consensus       155 ~I~~d~~-~----~~~~~~l~~~~r~~LkpGG~lv~  185 (236)
T 2bm8_A          155 LIFIDNA-H----ANTFNIMKWAVDHLLEEGDYFII  185 (236)
T ss_dssp             EEEEESS-C----SSHHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEEECCc-h----HhHHHHHHHHHHhhCCCCCEEEE
Confidence            9999876 2    244567777775 665 444444

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.09  E-value=5.2e-10  Score=92.77  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             HHhhcCCCC-CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccc--cccc
Q 027945           40 AENSFGDVS-NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE--WRVC  113 (216)
Q Consensus        40 ~~~~~~~~~-~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~~  113 (216)
                      ++..+...+ +.+|||+|||+|.++..+++. +..+++++|+ +.+++.++.++...+.  +++++.+|+.+..  ... 
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  247 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG-  247 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC-
T ss_pred             HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC-
Confidence            333333344 789999999999999999976 4569999999 8899999999988776  6999999998865  332 


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .   ||+|++...++...+......++++.+.++
T Consensus       248 ~---~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~  278 (352)
T 3mcz_A          248 A---ADVVMLNDCLHYFDAREAREVIGHAAGLVK  278 (352)
T ss_dssp             C---EEEEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred             C---ccEEEEecccccCCHHHHHHHHHHHHHHcC
Confidence            4   999999888876644444677888887765

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.09  E-value=1.8e-09  Score=86.11  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+.+..    ++.+..+|+.+.+..+++   ||+|+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~~~---fD~v~~~~  156 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFCVASSHRLPFSDTS---MDAIIRIY  156 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTSCSBCTTC---EEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC----CcEEEEcchhhCCCCCCc---eeEEEEeC
Confidence            46789999999999999999986 34599999999999999988753    578999999887655445   99999864


Q ss_pred             C
Q 027945          126 P  126 (216)
Q Consensus       126 p  126 (216)
                      +
T Consensus       157 ~  157 (269)
T 1p91_A          157 A  157 (269)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.08  E-value=1.8e-10  Score=89.10  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHH----HHhcCC-CeEEEEcccccccccccCCCccc
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASEN----AADLEL-DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~----~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      ..++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.+..+    ....+. +++++++|+.+++... .  . |
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~-~--~-d  100 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS-G--V-G  100 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC-C--E-E
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC-C--C-C
Confidence            3467899999999999999999873 56999999999988864333    334455 7999999999876543 2  2 7


Q ss_pred             EEEEcCCCCCC---CCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTR---KKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~---~~~~~~~~l~~~~~~~~  147 (216)
                      .|++..++...   .-.....+++++.+.++
T Consensus       101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  131 (218)
T 3mq2_A          101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCR  131 (218)
T ss_dssp             EEEEESCCHHHHHHHHTSSSHHHHHHHHTEE
T ss_pred             EEEEEccchhhhhhhhccHHHHHHHHHHHcC
Confidence            66665554322   00112466777777765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.08  E-value=7.9e-10  Score=91.93  Aligned_cols=99  Identities=15%  Similarity=0.165  Sum_probs=77.9

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCccc
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      .+...++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++...+.  +++++.+|+.+... . .   ||
T Consensus       178 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~-~---~D  251 (360)
T 1tw3_A          178 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-R-K---AD  251 (360)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-S-C---EE
T ss_pred             hCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC-C-C---cc
Confidence            3344567899999999999999999764 458999999 9999999999988776  69999999986322 2 3   99


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|++...++..........++++.+.++
T Consensus       252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~  279 (360)
T 1tw3_A          252 AIILSFVLLNWPDHDAVRILTRCAEALE  279 (360)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred             EEEEcccccCCCHHHHHHHHHHHHHhcC
Confidence            9999888876533333567888887765

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.07  E-value=1e-09  Score=91.64  Aligned_cols=96  Identities=16%  Similarity=0.188  Sum_probs=77.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccc--ccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE--WRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~~~~~~fD~v  121 (216)
                      ....+|||+|||+|..+..+++. +..+++++|+ +.+++.|+.++...+.  +++++.+|+.+..  .+ ..   ||+|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~---~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TG---FDAV  252 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CC---CSEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CC---cCEE
Confidence            35679999999999999999975 4559999999 9999999999988776  7999999998852  33 24   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++.-.++..........++++.+.++
T Consensus       253 ~~~~vlh~~~~~~~~~~l~~~~~~L~  278 (363)
T 3dp7_A          253 WMSQFLDCFSEEEVISILTRVAQSIG  278 (363)
T ss_dssp             EEESCSTTSCHHHHHHHHHHHHHHCC
T ss_pred             EEechhhhCCHHHHHHHHHHHHHhcC
Confidence            99887776544444567777777765

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.07  E-value=8.5e-10  Score=90.83  Aligned_cols=95  Identities=16%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .+..+|||+|||+|..+..+++. +..+++++|+ +.+++.|+.++...+.  +++++.+|+.+ +.+. .   ||+|++
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~-~---~D~v~~  241 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPA-G---AGGYVL  241 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCC-S---CSEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCC-C---CcEEEE
Confidence            34579999999999999999875 4558999999 9999999999988776  69999999974 3332 4   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .-.++...+......++++.+.++
T Consensus       242 ~~vlh~~~~~~~~~~l~~~~~~L~  265 (332)
T 3i53_A          242 SAVLHDWDDLSAVAILRRCAEAAG  265 (332)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHT
T ss_pred             ehhhccCCHHHHHHHHHHHHHhcC
Confidence            888776644434567777766654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.05  E-value=9.3e-10  Score=87.89  Aligned_cols=93  Identities=9%  Similarity=-0.076  Sum_probs=73.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEcccccccccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ..+.+|||+|||+|.++..+++++ .+|+++|+|+.+++.|++++...     ..+++++.+|+.++.   +.   ||+|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~---fD~I  143 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KK---YDLI  143 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CC---EEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hh---CCEE
Confidence            356799999999999999999876 89999999999999999876431     227999999998876   24   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      ++|.+       ....+++.+.+.++ ++++++
T Consensus       144 i~d~~-------dp~~~~~~~~~~L~pgG~lv~  169 (262)
T 2cmg_A          144 FCLQE-------PDIHRIDGLKRMLKEDGVFIS  169 (262)
T ss_dssp             EESSC-------CCHHHHHHHHTTEEEEEEEEE
T ss_pred             EECCC-------ChHHHHHHHHHhcCCCcEEEE
Confidence            99854       12347888888776 344443

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.05  E-value=1.2e-09  Score=84.55  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=70.4

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++.+.      .+++++|+.+..... ..++||+|+++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~-~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPY-EEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCS-CTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCC-CCCccCEEEECCh
Confidence            467899999999999999999875 69999999999999998774      378899987632221 1234999999888


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++..  ....+++++.+.++
T Consensus       103 l~~~~--~~~~~l~~~~~~L~  121 (230)
T 3cc8_A          103 LEHLF--DPWAVIEKVKPYIK  121 (230)
T ss_dssp             GGGSS--CHHHHHHHTGGGEE
T ss_pred             hhhcC--CHHHHHHHHHHHcC
Confidence            76653  23567777777765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.04  E-value=5.5e-10  Score=94.74  Aligned_cols=105  Identities=9%  Similarity=0.042  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC---eEEEEccccccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD---IDFVQCDIRNLE  109 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~d~~~~~  109 (216)
                      ...+...++..+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+.+    +..   ..+...+...++
T Consensus        92 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~  166 (416)
T 4e2x_A           92 FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVR  166 (416)
T ss_dssp             HHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcc
Confidence            444455555555555778999999999999999998766 999999999999999876    221   112234444444


Q ss_pred             ccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          110 WRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ..+++   ||+|+++-.+++..  ....+++++.+.++
T Consensus       167 ~~~~~---fD~I~~~~vl~h~~--d~~~~l~~~~r~Lk  199 (416)
T 4e2x_A          167 RTEGP---ANVIYAANTLCHIP--YVQSVLEGVDALLA  199 (416)
T ss_dssp             HHHCC---EEEEEEESCGGGCT--THHHHHHHHHHHEE
T ss_pred             cCCCC---EEEEEECChHHhcC--CHHHHHHHHHHHcC
Confidence            44445   99999998887773  45678888888776

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.02  E-value=3e-10  Score=89.15  Aligned_cols=92  Identities=17%  Similarity=0.218  Sum_probs=59.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEE-EcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV-QCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++.+...    +... ..++......+-....||.+.+|.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~D~  111 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER----VVVMEQFNFRNAVLADFEQGRPSFTSIDV  111 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT----EEEECSCCGGGCCGGGCCSCCCSEEEECC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc----ccccccceEEEeCHhHcCcCCCCEEEEEE
Confidence            46779999999999999999998767999999999999998776443    2111 112222111110101267777777


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .|...     ...+.++.+.++
T Consensus       112 v~~~l-----~~~l~~i~rvLk  128 (232)
T 3opn_A          112 SFISL-----DLILPPLYEILE  128 (232)
T ss_dssp             SSSCG-----GGTHHHHHHHSC
T ss_pred             EhhhH-----HHHHHHHHHhcc
Confidence            76544     345566666554

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.01  E-value=3e-09  Score=82.31  Aligned_cols=83  Identities=16%  Similarity=0.178  Sum_probs=67.7

Q ss_pred             CCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      +.+|||+|||+|.++..+++.     +++|+++.+++.++.+      +++++++|+.+.+.....   ||+|+++..++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~---fD~v~~~~~l~  113 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLPLKDES---FDFALMVTTIC  113 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTC---EEEEEEESCGG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCCCCCCC---eeEEEEcchHh
Confidence            779999999999999988774     9999999999999887      478999999877654434   99999988877


Q ss_pred             CCCCCCCHHHHHHHHhhcC
Q 027945          129 TRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~  147 (216)
                      +..  .....++++.+.++
T Consensus       114 ~~~--~~~~~l~~~~~~L~  130 (219)
T 1vlm_A          114 FVD--DPERALKEAYRILK  130 (219)
T ss_dssp             GSS--CHHHHHHHHHHHEE
T ss_pred             hcc--CHHHHHHHHHHHcC
Confidence            652  34567777777765

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.00  E-value=1.1e-09  Score=90.26  Aligned_cols=92  Identities=18%  Similarity=0.251  Sum_probs=73.4

Q ss_pred             CEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .+|||+|||+|..+..+++. +..+++++|+ +.+++.++.++...+.  +++++.+|+.+. .+ ..   ||+|++.-.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~-~~---~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE-VP-SN---GDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC-CC-SS---CSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC-CC-CC---CCEEEEchh
Confidence            89999999999999999975 4559999999 9999999999876554  699999999873 33 24   999999888


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++..........++++.+.++
T Consensus       243 l~~~~~~~~~~~l~~~~~~L~  263 (334)
T 2ip2_A          243 IGDLDEAASLRLLGNCREAMA  263 (334)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSC
T ss_pred             ccCCCHHHHHHHHHHHHHhcC
Confidence            775533333467777777665

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.99  E-value=2.3e-09  Score=86.70  Aligned_cols=99  Identities=12%  Similarity=0.064  Sum_probs=66.9

Q ss_pred             CCCCEEEEecCCcchHHHHH----HHc-CCCeE--EEEeCCHHHHHHHHHHHHhc-CC-C--eEEEEcccccccccc---
Q 027945           47 VSNKVVADFGCGCGTLGAAA----TLL-GADQV--IAIDIDSDSLELASENAADL-EL-D--IDFVQCDIRNLEWRV---  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l----~~~-~~~~v--~~~D~~~~~~~~a~~~~~~~-~~-~--~~~~~~d~~~~~~~~---  112 (216)
                      .++.+|||+|||+|.++..+    +.. +...|  +++|+|+.|++.|++++... +. +  +.+..+++.++....   
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            35579999999999876533    222 23344  99999999999999998653 33 3  455677776543100   


Q ss_pred             cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      -.+++||+|++.-.+++..  .....++++.+.++
T Consensus       131 ~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~Lk  163 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLG  163 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEE
T ss_pred             cCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcC
Confidence            0122499999988887763  33567888888765

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.98  E-value=4e-10  Score=90.66  Aligned_cols=84  Identities=19%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH---hcCCCeEEE--Eccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA---DLELDIDFV--QCDIRNLE  109 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~---~~~~~~~~~--~~d~~~~~  109 (216)
                      ..|.++.......++.+|||+|||+|.++..++++  .+|+|+|+++ ++..++.+..   ..+.+++++  ++|+.+++
T Consensus        69 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  145 (276)
T 2wa2_A           69 AKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME  145 (276)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred             HHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence            44555555423456789999999999999999987  5899999998 4333322110   111257888  99998865


Q ss_pred             ccccCCCcccEEEEcCC
Q 027945          110 WRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp  126 (216)
                        ...   ||+|++|.+
T Consensus       146 --~~~---fD~Vvsd~~  157 (276)
T 2wa2_A          146 --PFQ---ADTVLCDIG  157 (276)
T ss_dssp             --CCC---CSEEEECCC
T ss_pred             --CCC---cCEEEECCC
Confidence              224   999999987

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.98  E-value=8e-10  Score=88.76  Aligned_cols=81  Identities=19%  Similarity=0.181  Sum_probs=57.6

Q ss_pred             CCCEEEEecCCcch----HHHHHHHc-C----CCeEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q 027945           48 SNKVVADFGCGCGT----LGAAATLL-G----ADQVIAIDIDSDSLELASENAAD-----------------------LE   95 (216)
Q Consensus        48 ~~~~vLD~g~G~G~----~~~~l~~~-~----~~~v~~~D~~~~~~~~a~~~~~~-----------------------~~   95 (216)
                      ++.+|||+|||||.    +++.++.. +    ..+|+|+|+|+.+++.|+.++..                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    55556653 3    24899999999999999987510                       11


Q ss_pred             ---------CCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           96 ---------LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        96 ---------~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                               .++.|.++|+.+.++..  .++||+|+|.-.+++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~--~~~fDlI~crnvliyf  226 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNV--PGPFDAIFCRNVMIYF  226 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCC--CCCEEEEEECSSGGGS
T ss_pred             ceeechhhcccCeEEecccCCCCCCc--CCCeeEEEECCchHhC
Confidence                     15899999998854331  1249999995554433

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.98  E-value=3.3e-09  Score=80.74  Aligned_cols=70  Identities=19%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc--------------
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE--------------  109 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------------  109 (216)
                      .++.+|||+|||+|.++..++++ +  ..+|+|+|+++.+         . ..+++++++|+.+..              
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-IPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-CTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-CCCceEEEccccchhhhhhcccccccccc
Confidence            46679999999999999999976 3  3699999999831         0 115889999998764              


Q ss_pred             -----------ccccCCCcccEEEEcCCCCC
Q 027945          110 -----------WRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       110 -----------~~~~~~~~fD~v~~npp~~~  129 (216)
                                 ...   ++||+|++|++++.
T Consensus        91 ~~~~~~~~~~~~~~---~~fD~v~~~~~~~~  118 (201)
T 2plw_A           91 NNSVDYKLKEILQD---KKIDIILSDAAVPC  118 (201)
T ss_dssp             -CHHHHHHHHHHTT---CCEEEEEECCCCCC
T ss_pred             chhhHHHHHhhcCC---CcccEEEeCCCcCC
Confidence                       222   24999999987664

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.96  E-value=5.4e-10  Score=89.40  Aligned_cols=84  Identities=20%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH---HhcCCCeEEE--Eccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA---ADLELDIDFV--QCDIRNLE  109 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~~~~~~~--~~d~~~~~  109 (216)
                      ..|.++.......++.+|||+|||+|..+..+++.  .+|+|+|+++ ++..++.+.   +..+.++.++  ++|+.+++
T Consensus        61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  137 (265)
T 2oxt_A           61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP  137 (265)
T ss_dssp             HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred             HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence            33444444423456789999999999999999987  5899999998 432222111   0111257888  99998865


Q ss_pred             ccccCCCcccEEEEcCC
Q 027945          110 WRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp  126 (216)
                        ...   ||+|++|..
T Consensus       138 --~~~---fD~V~sd~~  149 (265)
T 2oxt_A          138 --VER---TDVIMCDVG  149 (265)
T ss_dssp             --CCC---CSEEEECCC
T ss_pred             --CCC---CcEEEEeCc
Confidence              224   999999987

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.94  E-value=7.6e-10  Score=88.44  Aligned_cols=107  Identities=7%  Similarity=-0.015  Sum_probs=77.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp  126 (216)
                      .+..+||+++|||.+++++.+. ..+++.+|.++..++..++|++.. .+++++..|........ ....+||+|++|||
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~~-~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP  168 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHFN-KKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  168 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCTT-SCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCcC-CcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence            4556899999999999999995 479999999999999999999762 37999999987754321 11224999999999


Q ss_pred             CCCC-CCCCCHHHHHHHHhhcCCcEEEEecC
Q 027945          127 FGTR-KKGVDMDFLSMALKVASQAVYSLHKT  156 (216)
Q Consensus       127 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~  156 (216)
                      |... ........+.+.....+..+|++=.|
T Consensus       169 Ye~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP  199 (283)
T 2oo3_A          169 YERKEEYKEIPYAIKNAYSKFSTGLYCVWYP  199 (283)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence            9853 22222334455445555566655444

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.90  E-value=1.4e-08  Score=76.90  Aligned_cols=87  Identities=17%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CC---------CeEEEEeCCHHHHHHHHHHHHhcCC-CeEEE-Ecccccccc----
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GA---------DQVIAIDIDSDSLELASENAADLEL-DIDFV-QCDIRNLEW----  110 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~---------~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~-~~d~~~~~~----  110 (216)
                      .++.+|||+|||+|.++..+++. +.         .+|+++|+++.+           .. +++++ ++|+.....    
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence            46789999999999999999976 43         699999999832           11 57888 899876432    


Q ss_pred             ----cccCCCcccEEEEcCCCCCCCCC-CC--------HHHHHHHHhhcC
Q 027945          111 ----RVCSVGHVDTVVMNPPFGTRKKG-VD--------MDFLSMALKVAS  147 (216)
Q Consensus       111 ----~~~~~~~fD~v~~npp~~~~~~~-~~--------~~~l~~~~~~~~  147 (216)
                          ....   ||+|++|++++..... .+        ...++++.+.++
T Consensus        90 ~~~~~~~~---fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  136 (196)
T 2nyu_A           90 LEVLPGRR---ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ  136 (196)
T ss_dssp             HHHSGGGC---EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHhcCCCC---CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence                1224   9999999865543111 11        245666666654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.86  E-value=3.5e-08  Score=70.91  Aligned_cols=85  Identities=15%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             ccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcc-hHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeE
Q 027945           22 ELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG-TLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDID   99 (216)
Q Consensus        22 ~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G-~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~   99 (216)
                      +.+-.|....+...+...+...+  .++.+|||+|||+| ..+..+++ .|. .|+++|+++.+++              
T Consensus        11 ~~~~~~~~~~m~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~--------------   73 (153)
T 2k4m_A           11 SSGLVPRGSHMWNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG--------------   73 (153)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT--------------
T ss_pred             cCCcccchhhHHHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc--------------
Confidence            34445666667666666655543  34579999999999 59999997 676 8999999997766              


Q ss_pred             EEEcccccccccc-cCCCcccEE-EEcCC
Q 027945          100 FVQCDIRNLEWRV-CSVGHVDTV-VMNPP  126 (216)
Q Consensus       100 ~~~~d~~~~~~~~-~~~~~fD~v-~~npp  126 (216)
                      +++.|+++..... ..   ||+| ..|||
T Consensus        74 ~v~dDiF~P~~~~Y~~---~DLIYsirPP   99 (153)
T 2k4m_A           74 IVRDDITSPRMEIYRG---AALIYSIRPP   99 (153)
T ss_dssp             EECCCSSSCCHHHHTT---EEEEEEESCC
T ss_pred             eEEccCCCCcccccCC---cCEEEEcCCC
Confidence            7899998855532 24   9999 57998

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.84  E-value=1.4e-08  Score=81.03  Aligned_cols=89  Identities=18%  Similarity=0.175  Sum_probs=69.4

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc--cC
Q 027945           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV--CS  114 (216)
Q Consensus        37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~  114 (216)
                      +..++..+...++..++|.+||.|..+..+++. ..+|+|+|.|+.+++.|+. ++.  .+++++++|+.++....  ..
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~~~L~~~g   86 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLKRHLAALG   86 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHHHHHHHcC
Confidence            334444445567889999999999999999987 4599999999999999998 755  37999999999875321  11


Q ss_pred             CCcccEEEEcCCCCC
Q 027945          115 VGHVDTVVMNPPFGT  129 (216)
Q Consensus       115 ~~~fD~v~~npp~~~  129 (216)
                      ..++|.|++|+++..
T Consensus        87 ~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           87 VERVDGILADLGVSS  101 (285)
T ss_dssp             CSCEEEEEEECSCCH
T ss_pred             CCCcCEEEeCCcccc
Confidence            134999999998655

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.83  E-value=2.3e-08  Score=79.96  Aligned_cols=97  Identities=14%  Similarity=0.094  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCc--chHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccc----c--ccCCC
Q 027945           48 SNKVVADFGCGC--GTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEW----R--VCSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~--G~~~~~l~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----~--~~~~~  116 (216)
                      ....+||+|||+  +..+..+++  .+..+|+++|.|+.|++.|+.++...+. +++++++|+.+...    .  ...  
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~--  155 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT--  155 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT--
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc--
Confidence            446899999997  333444443  2556999999999999999999876543 68999999988531    1  112  


Q ss_pred             ccc-----EEEEcCCCCCCCCCCC-HHHHHHHHhhcC
Q 027945          117 HVD-----TVVMNPPFGTRKKGVD-MDFLSMALKVAS  147 (216)
Q Consensus       117 ~fD-----~v~~npp~~~~~~~~~-~~~l~~~~~~~~  147 (216)
                       ||     .|++|-.+|+...... ...++++.+.++
T Consensus       156 -~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~  191 (277)
T 3giw_A          156 -LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP  191 (277)
T ss_dssp             -CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC
T ss_pred             -cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC
Confidence             55     6889999998866554 567888887765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.77  E-value=1.2e-08  Score=84.52  Aligned_cols=99  Identities=14%  Similarity=0.067  Sum_probs=70.3

Q ss_pred             HHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCC
Q 027945           40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        40 ~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~  116 (216)
                      ++..+...++.+|||+|||+|..+..+++. +..+++++|+ +.++.  +.+.+..+.  +++++.+|+.+..+   .  
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p---~--  247 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP---H--  247 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC---C--
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC---C--
Confidence            344444456789999999999999999975 4458999999 44554  333332233  69999999973222   4  


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          117 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       ||+|++.-.++...+......++++.+.++
T Consensus       248 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk  277 (348)
T 3lst_A          248 -ADVHVLKRILHNWGDEDSVRILTNCRRVMP  277 (348)
T ss_dssp             -CSEEEEESCGGGSCHHHHHHHHHHHHHTCC
T ss_pred             -CcEEEEehhccCCCHHHHHHHHHHHHHhcC
Confidence             999999888876644434577888888765

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.77  E-value=5.4e-08  Score=80.85  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=74.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ......+|+|+|||+|.++..++++ +..+++..|+ |.+++.|+.++...+. +++++.+|+++.+.+  .   +|+|+
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~---~D~~~  249 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--E---ADLYI  249 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--C---CSEEE
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--C---ceEEE
Confidence            3345679999999999999999976 5558889998 8899999998876554 799999999875444  3   89999


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          123 MNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       123 ~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.-..|.-.+..-...|+++.+.++
T Consensus       250 ~~~vlh~~~d~~~~~iL~~~~~al~  274 (353)
T 4a6d_A          250 LARVLHDWADGKCSHLLERIYHTCK  274 (353)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHCC
T ss_pred             eeeecccCCHHHHHHHHHHHHhhCC
Confidence            8766665544444567888877765

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.76  E-value=6.2e-09  Score=84.87  Aligned_cols=83  Identities=16%  Similarity=0.064  Sum_probs=56.5

Q ss_pred             HHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeC----CHHHHHHHHHHHHhcCC-CeEEEEc-ccccccc
Q 027945           37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI----DSDSLELASENAADLEL-DIDFVQC-DIRNLEW  110 (216)
Q Consensus        37 l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~----~~~~~~~a~~~~~~~~~-~~~~~~~-d~~~~~~  110 (216)
                      |.++.......++.+|||+|||+|.++..++++  .+|+++|+    ++.+++.+.  .+..+. +++++++ |+...+.
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~~  146 (305)
T 2p41_A           71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIPP  146 (305)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSCC
T ss_pred             HHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCCc
Confidence            334444322346789999999999999999987  48999999    443332111  111111 5889998 8887643


Q ss_pred             cccCCCcccEEEEcCCCC
Q 027945          111 RVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus       111 ~~~~~~~fD~v~~npp~~  128 (216)
                      .  .   ||+|++|.+++
T Consensus       147 ~--~---fD~V~sd~~~~  159 (305)
T 2p41_A          147 E--R---CDTLLCDIGES  159 (305)
T ss_dssp             C--C---CSEEEECCCCC
T ss_pred             C--C---CCEEEECCccc
Confidence            2  4   99999998764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.75  E-value=1.4e-08  Score=78.06  Aligned_cols=77  Identities=31%  Similarity=0.378  Sum_probs=60.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..++    .+++++|+++.              +++++++|+.+.+.....   ||+|+++..
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~~~~~~---fD~v~~~~~  124 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVPLEDES---VDVAVFCLS  124 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCSCCTTC---EEEEEEESC
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCCCCCCC---EeEEEEehh
Confidence            456799999999999988773    48999999986              367889999886654444   999999988


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++.   ......++++.+.++
T Consensus       125 l~~---~~~~~~l~~~~~~L~  142 (215)
T 2zfu_A          125 LMG---TNIRDFLEEANRVLK  142 (215)
T ss_dssp             CCS---SCHHHHHHHHHHHEE
T ss_pred             ccc---cCHHHHHHHHHHhCC
Confidence            863   344567787777765

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.73  E-value=8.2e-09  Score=91.36  Aligned_cols=75  Identities=20%  Similarity=0.209  Sum_probs=58.6

Q ss_pred             CCCCEEEEecCCcchHHHHHH---HcCCC--eEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCccc
Q 027945           47 VSNKVVADFGCGCGTLGAAAT---LLGAD--QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~---~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      .+..+|+|+|||+|.++...+   +.+..  +|+++|-++ +...+++....|+.  +|+++++|.++...+. +   +|
T Consensus       356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPE-K---VD  430 (637)
T 4gqb_A          356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPE-K---AD  430 (637)
T ss_dssp             TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSS-C---EE
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCc-c---cC
Confidence            345689999999999844444   33333  789999998 56678888888887  7999999999987664 4   99


Q ss_pred             EEEEcCC
Q 027945          120 TVVMNPP  126 (216)
Q Consensus       120 ~v~~npp  126 (216)
                      +||+..-
T Consensus       431 IIVSEwM  437 (637)
T 4gqb_A          431 IIVSELL  437 (637)
T ss_dssp             EEECCCC
T ss_pred             EEEEEcC
Confidence            9999654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.71  E-value=7.6e-07  Score=68.02  Aligned_cols=116  Identities=17%  Similarity=0.167  Sum_probs=78.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC----CeEEE
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----DIDFV  101 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~  101 (216)
                      +++.......+|...+.     +.++|||+||  |.-++.+++...++|+.+|.|++..+.|+.+++.+|.    +++++
T Consensus        13 ~~~v~~~~~~~L~~~l~-----~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~   85 (202)
T 3cvo_A           13 ELTMPPAEAEALRMAYE-----EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIV   85 (202)
T ss_dssp             CCCSCHHHHHHHHHHHH-----HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEE
T ss_pred             CccCCHHHHHHHHHHhh-----CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence            44455556666665433     5579999998  4677777875346999999999999999999999885    69999


Q ss_pred             Eccccccc--------------c-------cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          102 QCDIRNLE--------------W-------RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       102 ~~d~~~~~--------------~-------~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                      .+|+.+..              .       .....++||+|+.|-.+.       ...+..++...+ +++.++.+
T Consensus        86 ~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A           86 WTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             ECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSSCEEEEETT
T ss_pred             EeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCCCeEEEEeC
Confidence            99976531              0       011124599999986522       244555555555 44444444

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.70  E-value=4.2e-08  Score=81.96  Aligned_cols=97  Identities=18%  Similarity=0.107  Sum_probs=72.2

Q ss_pred             HHHhhcC-CCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCC
Q 027945           39 TAENSFG-DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        39 ~~~~~~~-~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  116 (216)
                      .++..+. ..++.+|||+|||+|..+..+++.. ..+++++|+ +.+++.++..     .+++++.+|+.+ +.+  .  
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~--~--  267 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-SVP--Q--  267 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCC--C--
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-CCC--C--
Confidence            3344433 3456799999999999999999764 458999999 8898877652     158999999987 333  3  


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          117 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       ||+|++.-.++..........++++.+.++
T Consensus       268 -~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~  297 (372)
T 1fp1_D          268 -GDAMILKAVCHNWSDEKCIEFLSNCHKALS  297 (372)
T ss_dssp             -EEEEEEESSGGGSCHHHHHHHHHHHHHHEE
T ss_pred             -CCEEEEecccccCCHHHHHHHHHHHHHhcC
Confidence             999999888876644333477888877765

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.68  E-value=4.6e-07  Score=73.07  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc--C----CCeEEEEc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL--E----LDIDFVQC  103 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~--~----~~~~~~~~  103 (216)
                      ....+++...... .....++||-+|.|.|....+++++ +..+|+.+|+|+..++.+++.+...  +    -+++++.+
T Consensus        67 ~~YhE~l~h~~l~-~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~  145 (294)
T 3o4f_A           67 FIYHEMMTHVPLL-AHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID  145 (294)
T ss_dssp             HHHHHHHHHHHHH-HSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred             HHHHHHHHHHHHh-hCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence            3444455443222 2345689999999999999999987 4679999999999999999987532  1    27999999


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCC-CCC-CCHHHHHHHHhhcC-CcEEE
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTR-KKG-VDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~-~~~-~~~~~l~~~~~~~~-~~~~~  152 (216)
                      |+..+....  ..+||+|+.|.+=... ... -..++++.+.+.+. +++++
T Consensus       146 Dg~~~l~~~--~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v  195 (294)
T 3o4f_A          146 DGVNFVNQT--SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFV  195 (294)
T ss_dssp             CTTTTTSCS--SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEE
T ss_pred             hHHHHHhhc--cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEE
Confidence            999987543  3469999998753211 111 23477888877776 44444

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.67  E-value=6.3e-08  Score=81.21  Aligned_cols=92  Identities=18%  Similarity=0.152  Sum_probs=66.1

Q ss_pred             CCCEEEEecCC------cchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc------cc
Q 027945           48 SNKVVADFGCG------CGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR------VC  113 (216)
Q Consensus        48 ~~~~vLD~g~G------~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~------~~  113 (216)
                      ++.+|||+|||      +|..++.+++.  +..+|+|+|+++.+.        ....+++++++|+.+.++.      .+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~dlpf~~~l~~~d~  287 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQNDAEFLDRIARRYG  287 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccccchhhhhhcccC
Confidence            56799999999      78878777754  456999999999862        1223799999999987654      33


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +   ||+|++|-. +..  ......++++.+.++ +++|++
T Consensus       288 s---FDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi  322 (419)
T 3sso_A          288 P---FDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVI  322 (419)
T ss_dssp             C---EEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEE
T ss_pred             C---ccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEE
Confidence            4   999999853 211  223467778888776 455554

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.65  E-value=8.5e-08  Score=80.09  Aligned_cols=89  Identities=11%  Similarity=0.121  Sum_probs=68.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .+..+|||+|||+|..+..+++. +..+++++|+ +.+++.++.+     .+++++.+|+++ +.+  .   -|+|++.-
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~p--~---~D~v~~~~  269 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-GVP--K---GDAIFIKW  269 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCC--C---CSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-CCC--C---CCEEEEec
Confidence            45679999999999999999975 4568999999 8888777643     269999999986 333  2   39999988


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+|..........++++.+.++
T Consensus       270 vlh~~~~~~~~~~l~~~~~~L~  291 (368)
T 3reo_A          270 ICHDWSDEHCLKLLKNCYAALP  291 (368)
T ss_dssp             CGGGBCHHHHHHHHHHHHHHSC
T ss_pred             hhhcCCHHHHHHHHHHHHHHcC
Confidence            8776544444567788777765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.63  E-value=3.1e-08  Score=82.14  Aligned_cols=87  Identities=16%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      +..+|||+|||+|..+..+++. +..+++++|+ +.+++.|+..     .+++++.+|+.+ +.+  .   ||+|++.-.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~p--~---~D~v~~~~~  255 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFT-SIP--N---ADAVLLKYI  255 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTT-CCC--C---CSEEEEESC
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccC-CCC--C---ccEEEeehh
Confidence            5579999999999999999976 4558999999 9999887652     148999999976 332  3   999999888


Q ss_pred             CCCCCCCCCHHHHHHHHhhc
Q 027945          127 FGTRKKGVDMDFLSMALKVA  146 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~  146 (216)
                      +++.........++++.+.+
T Consensus       256 lh~~~d~~~~~~l~~~~~~L  275 (352)
T 1fp2_A          256 LHNWTDKDCLRILKKCKEAV  275 (352)
T ss_dssp             GGGSCHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHhC
Confidence            87664333335566655543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.60  E-value=2.5e-07  Score=74.70  Aligned_cols=85  Identities=16%  Similarity=0.096  Sum_probs=55.9

Q ss_pred             CCCCCCEEEEecCCc------chHHHHHHH-cC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEE-EEcccccccccccCC
Q 027945           45 GDVSNKVVADFGCGC------GTLGAAATL-LG-ADQVIAIDIDSDSLELASENAADLELDIDF-VQCDIRNLEWRVCSV  115 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~------G~~~~~l~~-~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~d~~~~~~~~~~~  115 (216)
                      ...++.+|||+|||+      |.  ..+++ .+ ..+|+|+|+++.        +  .  ++++ +++|+.+.+... . 
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v--~--~v~~~i~gD~~~~~~~~-~-  123 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V--S--DADSTLIGDCATVHTAN-K-  123 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B--C--SSSEEEESCGGGCCCSS-C-
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C--C--CCEEEEECccccCCccC-c-
Confidence            345778999999954      66  33343 34 469999999997        1  1  5788 999998865442 4 


Q ss_pred             CcccEEEEcCCCCCC-----CC--CC--CHHHHHHHHhhcC
Q 027945          116 GHVDTVVMNPPFGTR-----KK--GV--DMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~npp~~~~-----~~--~~--~~~~l~~~~~~~~  147 (216)
                        ||+|++|++.+..     ..  ..  ....++.+.+.++
T Consensus       124 --fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk  162 (290)
T 2xyq_A          124 --WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA  162 (290)
T ss_dssp             --EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEE
T ss_pred             --ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcC
Confidence              9999999753321     00  11  1256666666665

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.59  E-value=1.7e-07  Score=78.16  Aligned_cols=97  Identities=16%  Similarity=0.099  Sum_probs=71.4

Q ss_pred             HHHhhcC-CCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCC
Q 027945           39 TAENSFG-DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        39 ~~~~~~~-~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  116 (216)
                      .++..+. ..+..+|||+|||+|..+..+++. +..+++++|+ +.+++.++.+     .+++++.+|+++ +.+  .  
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p--~--  259 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-EVP--S--  259 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCC--C--
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-CCC--C--
Confidence            3444444 345689999999999999999975 4558999999 8888776642     269999999987 433  2  


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          117 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       -|+|++.-.+|..........++++.+.++
T Consensus       260 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~  289 (364)
T 3p9c_A          260 -GDTILMKWILHDWSDQHCATLLKNCYDALP  289 (364)
T ss_dssp             -CSEEEEESCGGGSCHHHHHHHHHHHHHHSC
T ss_pred             -CCEEEehHHhccCCHHHHHHHHHHHHHHcC
Confidence             399999777765544444567788777765

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.58  E-value=4e-07  Score=75.39  Aligned_cols=93  Identities=13%  Similarity=0.092  Sum_probs=72.0

Q ss_pred             CCCCCcccccc-CCCCHHHHHHHHHHHHhh--cCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           15 QFSNPKVELEQ-YPTGPHIASRMLYTAENS--FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        15 ~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~--~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++..+++| |-+.+.+...++..+...  ....++..|||+|.|.|.++..++.. .+.+|+++|+|+..+...+..
T Consensus        22 ~~~~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~  101 (353)
T 1i4w_A           22 DISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAK  101 (353)
T ss_dssp             TTCSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHH
T ss_pred             hccCCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHh
Confidence            33556778888 777888888888877422  01114579999999999999999975 356999999999999999887


Q ss_pred             HHhcCCCeEEEEccccccc
Q 027945           91 AADLELDIDFVQCDIRNLE  109 (216)
Q Consensus        91 ~~~~~~~~~~~~~d~~~~~  109 (216)
                      . .. .+++++++|+..+.
T Consensus       102 ~-~~-~~l~ii~~D~l~~~  118 (353)
T 1i4w_A          102 F-EG-SPLQILKRDPYDWS  118 (353)
T ss_dssp             T-TT-SSCEEECSCTTCHH
T ss_pred             c-cC-CCEEEEECCccchh
Confidence            6 22 27999999997764

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.52  E-value=3.1e-07  Score=76.29  Aligned_cols=83  Identities=17%  Similarity=0.129  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-------CeEEEEcccccccccccCCC
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~  116 (216)
                      ...++.+|||+|||.|.=+..++..+ ...++++|+++..++.+++|++..+.       ++.+...|...+....  .+
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~--~~  222 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE--GD  222 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS--TT
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc--cc
Confidence            45688999999999999999998764 44799999999999999999987653       5788899987765332  12


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +||.|++|+|...
T Consensus       223 ~fD~VLlDaPCSg  235 (359)
T 4fzv_A          223 TYDRVLVDVPCTT  235 (359)
T ss_dssp             CEEEEEEECCCCC
T ss_pred             cCCEEEECCccCC
Confidence            4999999999754

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.51  E-value=1.3e-07  Score=78.55  Aligned_cols=87  Identities=15%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      +..+|||+|||+|.++..+++. +..+++++|+ +.+++.++..     .+++++.+|+.+ +.+  .   ||+|++.-.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~--~---~D~v~~~~v  260 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-----ENLNFVGGDMFK-SIP--S---ADAVLLKWV  260 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-----SSEEEEECCTTT-CCC--C---CSEEEEESC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-----CCcEEEeCccCC-CCC--C---ceEEEEccc
Confidence            5579999999999999999976 3458999999 7888776541     158999999987 433  3   999999888


Q ss_pred             CCCCCCCCCHHHHHHHHhhc
Q 027945          127 FGTRKKGVDMDFLSMALKVA  146 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~  146 (216)
                      ++..........++++.+.+
T Consensus       261 lh~~~d~~~~~~l~~~~~~L  280 (358)
T 1zg3_A          261 LHDWNDEQSLKILKNSKEAI  280 (358)
T ss_dssp             GGGSCHHHHHHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHHhC
Confidence            87664433346666666554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.43  E-value=9.5e-07  Score=71.59  Aligned_cols=60  Identities=25%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      +..+...++...    . .++.+|||+|||+|..++.+++.|. +++|+|+++.+++.|+.+++..
T Consensus       221 p~~l~~~~i~~~----~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          221 PLELAERLVRMF----S-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CHHHHHHHHHHH----C-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh----C-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            344555554432    2 4778999999999999999999776 9999999999999999998764

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.37  E-value=4.8e-06  Score=68.38  Aligned_cols=102  Identities=17%  Similarity=0.136  Sum_probs=73.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      .+.+++|++||+|.+++.+.+.|...|.++|+++.+++..+.|.....      ++|+.+.....-.  .+|+|+.+||+
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~------~~Di~~~~~~~~~--~~D~l~~gpPC   81 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP------EGDITQVNEKTIP--DHDILCAGFPC   81 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC------BSCGGGSCGGGSC--CCSEEEEECCC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC------cCCHHHcCHhhCC--CCCEEEECCCC
Confidence            456999999999999999999898789999999999999999975421      6888876544311  39999999999


Q ss_pred             CCCC-----CC------CCHHHHHHHHhhcCCcEEEEecCc
Q 027945          128 GTRK-----KG------VDMDFLSMALKVASQAVYSLHKTS  157 (216)
Q Consensus       128 ~~~~-----~~------~~~~~l~~~~~~~~~~~~~~~~~~  157 (216)
                      ....     .+      .....+-++++..++.++++=|..
T Consensus        82 Q~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~  122 (327)
T 2c7p_A           82 QAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVK  122 (327)
T ss_dssp             TTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             CCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcH
Confidence            6651     11      111222334444556777665554

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.35  E-value=1.2e-06  Score=71.49  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=72.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV  112 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~  112 (216)
                      -||.+++..+...++.+++|..||.|..+..+++. + .++|+|+|.|+.+++.++ ++  .+.+++++++++.++....
T Consensus        44 VLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~l~~~L  120 (347)
T 3tka_A           44 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSALGEYV  120 (347)
T ss_dssp             TTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGGHHHHH
T ss_pred             ccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHHHHHHH
Confidence            46777777777778899999999999999999975 3 569999999999999995 44  2337999999998864322


Q ss_pred             ---cCCCcccEEEEcCCCCC
Q 027945          113 ---CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       113 ---~~~~~fD~v~~npp~~~  129 (216)
                         +..+++|.|++|..+..
T Consensus       121 ~~~g~~~~vDgILfDLGVSS  140 (347)
T 3tka_A          121 AERDLIGKIDGILLDLGVSS  140 (347)
T ss_dssp             HHTTCTTCEEEEEEECSCCH
T ss_pred             HhcCCCCcccEEEECCccCH
Confidence               11124999999888765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.32  E-value=1.8e-06  Score=68.56  Aligned_cols=61  Identities=25%  Similarity=0.331  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   95 (216)
                      |..+...++...     ..++..|||++||+|..++++.+.|. +++|+|+++.+++.|+.+++.++
T Consensus       198 p~~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          198 PRDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CHHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence            345555555443     24778999999999999999999775 99999999999999999998765

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.31  E-value=1.5e-06  Score=72.79  Aligned_cols=77  Identities=25%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccccc-----CCCcccEEEEc
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVC-----SVGHVDTVVMN  124 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~fD~v~~n  124 (216)
                      .+++|++||+|.+++-+.+.|...|.++|+++.+++..+.|..    +..++++|+.+.....-     ....+|+|+.+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg   78 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG   78 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence            4899999999999999998888778899999999999988864    36788899988643221     12349999999


Q ss_pred             CCCCCC
Q 027945          125 PPFGTR  130 (216)
Q Consensus       125 pp~~~~  130 (216)
                      ||....
T Consensus        79 pPCQ~f   84 (376)
T 3g7u_A           79 PPCQGF   84 (376)
T ss_dssp             CCCCTT
T ss_pred             CCCCCc
Confidence            996443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.30  E-value=1.1e-06  Score=65.35  Aligned_cols=81  Identities=11%  Similarity=0.058  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc---cccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||.               +++|+++.|++.|+++...   +++++++|+.+.+.   ...+   ||+|
T Consensus         9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~---fD~V   67 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESS---FDII   67 (176)
T ss_dssp             TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSC---EEEE
T ss_pred             CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCC---EeEE
Confidence            445788999999986               2399999999999988654   48999999988765   3434   9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++-.+++.. ......++++.+.++
T Consensus        68 ~~~~~l~~~~-~~~~~~l~~~~r~Lk   92 (176)
T 2ld4_A           68 LSGLVPGSTT-LHSAEILAEIARILR   92 (176)
T ss_dssp             EECCSTTCCC-CCCHHHHHHHHHHEE
T ss_pred             EECChhhhcc-cCHHHHHHHHHHHCC
Confidence            9987777651 234678888888876

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.30  E-value=4.8e-07  Score=74.87  Aligned_cols=76  Identities=21%  Similarity=0.236  Sum_probs=58.8

Q ss_pred             CEEEEecCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      .+++|++||.|.+++.+.+.|  ...|+++|+++.+++..+.|...    ..++.+|+.+.....-....+|+++++||.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~----~~~~~~Di~~~~~~~~~~~~~D~l~~gpPC   78 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGITLEEFDRLSFDMILMSPPC   78 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc----cccccCCHHHccHhHcCcCCcCEEEEcCCC
Confidence            489999999999999999888  45799999999999999999753    457789988865322000129999999995


Q ss_pred             CC
Q 027945          128 GT  129 (216)
Q Consensus       128 ~~  129 (216)
                      ..
T Consensus        79 q~   80 (343)
T 1g55_A           79 QP   80 (343)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.29  E-value=5.3e-06  Score=69.00  Aligned_cols=105  Identities=16%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-----CC----CeEEEEcccccccccc-cCCCc
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----EL----DIDFVQCDIRNLEWRV-CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~----~~~~~~~d~~~~~~~~-~~~~~  117 (216)
                      ++++||-+|.|.|....++.+++..+|+.+|+|+..++.|++.+...     ..    +++++.+|+.++.... ....+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            46899999999999999999987789999999999999999986432     11    4899999999876431 11224


Q ss_pred             ccEEEEcCCCCCC---CCCCC-----HHHHHHHHhhcC-CcEEE
Q 027945          118 VDTVVMNPPFGTR---KKGVD-----MDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       118 fD~v~~npp~~~~---~~~~~-----~~~l~~~~~~~~-~~~~~  152 (216)
                      ||+|+.|.+-...   ..+..     .++++.+.+.+. +++++
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv  328 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYF  328 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEE
Confidence            9999998642211   11111     245566666655 45554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.23  E-value=1.7e-06  Score=71.74  Aligned_cols=88  Identities=14%  Similarity=0.043  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhc--------CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEE
Q 027945           30 PHIASRMLYTAENSF--------GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFV  101 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~--------~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~  101 (216)
                      ++-+...|.++...+        ...+|.++||+||+.|..+..+++++. +|+++|+.+- -..    +...+ +++++
T Consensus       185 pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l-~~~----l~~~~-~V~~~  257 (375)
T 4auk_A          185 PSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPM-AQS----LMDTG-QVTWL  257 (375)
T ss_dssp             SCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCC-CHH----HHTTT-CEEEE
T ss_pred             CCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhc-Chh----hccCC-CeEEE
Confidence            445555666665443        135789999999999999999999876 9999997641 111    11111 69999


Q ss_pred             EcccccccccccCCCcccEEEEcCCC
Q 027945          102 QCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus       102 ~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++|++...+....   +|+|+||...
T Consensus       258 ~~d~~~~~~~~~~---~D~vvsDm~~  280 (375)
T 4auk_A          258 REDGFKFRPTRSN---ISWMVCDMVE  280 (375)
T ss_dssp             CSCTTTCCCCSSC---EEEEEECCSS
T ss_pred             eCccccccCCCCC---cCEEEEcCCC
Confidence            9999987765544   9999998763

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.17  E-value=5.3e-06  Score=73.84  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             CCCEEEEecCCcchHHHHH---HH-cC----------CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccccccc
Q 027945           48 SNKVVADFGCGCGTLGAAA---TL-LG----------ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR  111 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l---~~-~~----------~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~  111 (216)
                      ++..|||+|||+|.++...   ++ .+          ..+|+++|.|+.++..++.... |+.  +++++++|..+...+
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGI  487 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccc
Confidence            3468999999999996432   22 11          2399999999988766665554 555  699999999997652


Q ss_pred             --ccCCCcccEEEEcCC
Q 027945          112 --VCSVGHVDTVVMNPP  126 (216)
Q Consensus       112 --~~~~~~fD~v~~npp  126 (216)
                        ....++.|+||+...
T Consensus       488 ~~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELL  504 (745)
T ss_dssp             HHHTTCCCCSEEEECCC
T ss_pred             cccCCCCcccEEEEecc
Confidence              111235999999766

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.15  E-value=1.7e-05  Score=62.95  Aligned_cols=100  Identities=17%  Similarity=0.120  Sum_probs=65.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-------CC------CeEEEEeCCH---HH-----------HHHHHHHHHhc------
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-------GA------DQVIAIDIDS---DS-----------LELASENAADL------   94 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-------~~------~~v~~~D~~~---~~-----------~~~a~~~~~~~------   94 (216)
                      +..+|||+|+|+|..++.+++.       +.      .+++++|..|   +.           .+.++.+++.+      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999987776542       22      4899999886   33           33566666541      


Q ss_pred             --------C-CCeEEEEcccccccccc-c-CCCcccEEEEcCCCCCC-CCC-CCHHHHHHHHhhcCC
Q 027945           95 --------E-LDIDFVQCDIRNLEWRV-C-SVGHVDTVVMNPPFGTR-KKG-VDMDFLSMALKVASQ  148 (216)
Q Consensus        95 --------~-~~~~~~~~d~~~~~~~~-~-~~~~fD~v~~npp~~~~-~~~-~~~~~l~~~~~~~~~  148 (216)
                              + .+++++.+|+.+..... . ..+.||+|+.|+ |... ... -...+++.+.+.+++
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~p  205 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARP  205 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCC
Confidence                    1 26789999998854432 1 012499999996 2222 111 146788888888763

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.14  E-value=3e-06  Score=67.29  Aligned_cols=92  Identities=16%  Similarity=0.048  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      ++..|.++.......++.+|||+|||.|..+..++.. +...++++|+........... ...+.++.....++......
T Consensus        59 aA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~dv~~l~  137 (277)
T 3evf_A           59 GTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTDIHRLE  137 (277)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCCTTTSC
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCeEEEeccceehhcC
Confidence            5556666666644556779999999999999988865 666888888874321000000 11122344455554322222


Q ss_pred             ccCCCcccEEEEcCCCC
Q 027945          112 VCSVGHVDTVVMNPPFG  128 (216)
Q Consensus       112 ~~~~~~fD~v~~npp~~  128 (216)
                      .   ++||+|++|...+
T Consensus       138 ~---~~~DlVlsD~apn  151 (277)
T 3evf_A          138 P---VKCDTLLCDIGES  151 (277)
T ss_dssp             C---CCCSEEEECCCCC
T ss_pred             C---CCccEEEecCccC
Confidence            2   2499999997655

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.03  E-value=4.6e-06  Score=66.29  Aligned_cols=91  Identities=22%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEc--ccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQC--DIRNL  108 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--d~~~~  108 (216)
                      =++..|.++...+...++.+|||+|||.|..+..++. .+...|+|+|+.......+... ...+.++.....  |+..+
T Consensus        74 RAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~~ii~~~~~~dv~~l  152 (282)
T 3gcz_A           74 RGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGWNLIRFKDKTDVFNM  152 (282)
T ss_dssp             THHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTGGGEEEECSCCGGGS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCCceEEeeCCcchhhc
Confidence            3667777777776556778999999999999998885 4677899999875422111100 011223333332  43322


Q ss_pred             cccccCCCcccEEEEcCCCC
Q 027945          109 EWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~  128 (216)
                      .  .   .++|+|++|...+
T Consensus       153 ~--~---~~~DvVLSDmApn  167 (282)
T 3gcz_A          153 E--V---IPGDTLLCDIGES  167 (282)
T ss_dssp             C--C---CCCSEEEECCCCC
T ss_pred             C--C---CCcCEEEecCccC
Confidence            2  2   2499999998766

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.98  E-value=3.2e-06  Score=65.40  Aligned_cols=88  Identities=16%  Similarity=0.088  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEc-cccccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIRNLE  109 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~-d~~~~~  109 (216)
                      +...|.++...+...++.+|+|+||+.|..+..++. .+..+|+|+|+-+.-.+.=+ ..+..|. .+++..+ |++...
T Consensus        63 a~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~  141 (267)
T 3p8z_A           63 GSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLP  141 (267)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecC
Confidence            566777777776556778999999999999997775 47779999998653221000 0112233 5899999 987665


Q ss_pred             ccccCCCcccEEEEcCC
Q 027945          110 WRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp  126 (216)
                      ..  .   +|.|+||..
T Consensus       142 ~~--~---~DtllcDIg  153 (267)
T 3p8z_A          142 PE--K---CDTLLCDIG  153 (267)
T ss_dssp             CC--C---CSEEEECCC
T ss_pred             Cc--c---ccEEEEecC
Confidence            53  4   999999865

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.85  E-value=3.9e-05  Score=62.76  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=72.5

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      .+++|++||.|.+++-+.+.|..-+.++|+++.+.+.-+.|..     ..++.+|+.+.....-  .+.|+++.-||...
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~DI~~i~~~~~--~~~D~l~ggpPCQ~   73 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISSDEF--PKCDGIIGGPPSQS   73 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-----SEEEESCGGGCCGGGS--CCCSEEECCCCGGG
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----CCcccCChhhCCHhhC--CcccEEEecCCCCC
Confidence            3799999999999999998888788899999999999888863     4678899988765431  13999999999755


Q ss_pred             C-----CCC-CCH--HHH---HHHHhhcCCcEEEEecCc
Q 027945          130 R-----KKG-VDM--DFL---SMALKVASQAVYSLHKTS  157 (216)
Q Consensus       130 ~-----~~~-~~~--~~l---~~~~~~~~~~~~~~~~~~  157 (216)
                      .     ..+ .+.  ..+   -++++..++.++++=|..
T Consensus        74 fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~  112 (331)
T 3ubt_Y           74 WSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK  112 (331)
T ss_dssp             TEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred             cCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeec
Confidence            4     111 111  122   234444556777776554

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.85  E-value=9.4e-05  Score=60.78  Aligned_cols=105  Identities=19%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             CEEEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      .+++|++||.|.+++-+.+.|.  .-|.++|+++.+.+.-+.|...    ..++.+|+.+.....-....+|++++.||.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----~~~~~~DI~~~~~~~~~~~~~D~l~ggpPC   79 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE----TNLLNRNIQQLTPQVIKKWNVDTILMSPPC   79 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECCCGGGCCHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC----CceeccccccCCHHHhccCCCCEEEecCCC
Confidence            3799999999999999988775  5688999999999998888753    456788888765432111139999999997


Q ss_pred             CCCC-----------CCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945          128 GTRK-----------KGVDMDFLSMALKVAS-QAVYSLHKTST  158 (216)
Q Consensus       128 ~~~~-----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~  158 (216)
                      ....           .+.....+-++++..+ +.++++=|..+
T Consensus        80 Q~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~g  122 (333)
T 4h0n_A           80 QPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKG  122 (333)
T ss_dssp             CCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTT
T ss_pred             cchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchh
Confidence            5541           1122223334555554 67777666543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.85  E-value=7e-05  Score=60.51  Aligned_cols=80  Identities=19%  Similarity=0.106  Sum_probs=62.0

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCe--EEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccccc-CCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQ--VIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVC-SVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~fD~v~~  123 (216)
                      ....+++|++||.|.+++.+.+.|...  |.++|+++.+.+..+.|..    ...++.+|+.+.....- ..+.+|+++.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~----~~~~~~~DI~~i~~~~i~~~~~~Dll~g   89 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ----GKIMYVGDVRSVTQKHIQEWGPFDLVIG   89 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT----TCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC----CCceeCCChHHccHHHhcccCCcCEEEe
Confidence            345699999999999999999888655  6999999999988888754    24678899988654321 1123999999


Q ss_pred             cCCCCCC
Q 027945          124 NPPFGTR  130 (216)
Q Consensus       124 npp~~~~  130 (216)
                      .||....
T Consensus        90 gpPCQ~f   96 (295)
T 2qrv_A           90 GSPCNDL   96 (295)
T ss_dssp             CCCCGGG
T ss_pred             cCCCccc
Confidence            9998553

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.82  E-value=2.8e-05  Score=63.76  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=58.1

Q ss_pred             CCEEEEecCCcchHHHHHHHcCC--CeE-EEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGA--DQV-IAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~--~~v-~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ..+++|++||.|.+++-+.+.|.  ..| .++|+++.+.+..+.|...     .++++|+.+.....-....+|++++.|
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~~~~~DI~~~~~~~i~~~~~Dil~ggp   84 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----EVQVKNLDSISIKQIESLNCNTWFMSP   84 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----CCBCCCTTTCCHHHHHHTCCCEEEECC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----CcccCChhhcCHHHhccCCCCEEEecC
Confidence            45899999999999999998873  566 7999999999999999753     256788887654321111399999999


Q ss_pred             CCC
Q 027945          126 PFG  128 (216)
Q Consensus       126 p~~  128 (216)
                      |..
T Consensus        85 PCQ   87 (327)
T 3qv2_A           85 PCQ   87 (327)
T ss_dssp             CCT
T ss_pred             Ccc
Confidence            953

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.80  E-value=0.00013  Score=58.48  Aligned_cols=104  Identities=13%  Similarity=0.017  Sum_probs=72.0

Q ss_pred             CCCEEEEecCCcchHHHHHHHc------CCCeEEEEeCCH--------------------------HHHHHHHHHHHhcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL------GADQVIAIDIDS--------------------------DSLELASENAADLE   95 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~------~~~~v~~~D~~~--------------------------~~~~~a~~~~~~~~   95 (216)
                      ....|||+|+..|..++.++..      ...+++++|..+                          ..++.+++|++..|
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4568999999999988887753      246899999642                          14678899999887


Q ss_pred             C---CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945           96 L---DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus        96 ~---~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      +   +++++.+|+.+..... ..++||+|+.|.-    ........+..+..... +.+.++.+.
T Consensus       186 l~~~~I~li~Gda~etL~~~-~~~~~d~vfIDaD----~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTA-PIDTLAVLRMDGD----LYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTC-CCCCEEEEEECCC----SHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCcCceEEEEeCHHHHHhhC-CCCCEEEEEEcCC----ccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            6   6999999998865543 2345999999853    11123455666655554 455555443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.79  E-value=1e-05  Score=66.24  Aligned_cols=75  Identities=11%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      |..+...++...     ..++..|||++||+|..++++.+.|. +.+|+|+++..++.++.+++..+.....++.|+.+.
T Consensus       238 p~~l~~~~i~~~-----~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i  311 (323)
T 1boo_A          238 PAKLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI  311 (323)
T ss_dssp             CTHHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            455666665432     34778999999999999999998775 999999999999999999987665555555555544


Q ss_pred             c
Q 027945          109 E  109 (216)
Q Consensus       109 ~  109 (216)
                      .
T Consensus       312 ~  312 (323)
T 1boo_A          312 L  312 (323)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.79  E-value=5e-05  Score=60.68  Aligned_cols=88  Identities=14%  Similarity=0.014  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEc-cccccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC-DIRNLE  109 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~-d~~~~~  109 (216)
                      ....|.++...+...++.+|||+||+.|..+..++. .++.+|+|+|+-..-.+.=+ ..+..+. -+.+..+ |+..+.
T Consensus        79 ~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~  157 (321)
T 3lkz_A           79 GTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRP  157 (321)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCC
Confidence            556677777665556777999999999999997775 47778999998753110000 0001111 2677777 887665


Q ss_pred             ccccCCCcccEEEEcCC
Q 027945          110 WRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp  126 (216)
                      ..  .   +|+|+||-.
T Consensus       158 ~~--~---~D~ivcDig  169 (321)
T 3lkz_A          158 SE--C---CDTLLCDIG  169 (321)
T ss_dssp             CC--C---CSEEEECCC
T ss_pred             CC--C---CCEEEEECc
Confidence            52  4   999999987

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.59  E-value=0.00015  Score=59.31  Aligned_cols=62  Identities=18%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH---HHHHHHHHHHHhcC
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS---DSLELASENAADLE   95 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~---~~~~~a~~~~~~~~   95 (216)
                      -|..+...++...     ..++..|||++||+|..++++.+.|. +.+|+|+++   ..++.++.+++..+
T Consensus       227 kp~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          227 KPAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3566666666443     24778999999999999999998875 999999999   99999999987654

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.59  E-value=6.8e-05  Score=64.56  Aligned_cols=80  Identities=14%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc--------------cCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV--------------CSV  115 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--------------~~~  115 (216)
                      .+++|++||.|.+++-+.+.|..-|.++|+++.+.+.-+.|..... ...++.+|+.++....              ...
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~  167 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDP-ATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHI  167 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCT-TTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHS
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCC-CcceeccchhhhhhccccccchhhHHhhhhhcC
Confidence            4899999999999999998887679999999999988888863211 3456778887754210              011


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ..+|+++..||....
T Consensus       168 ~~~Dvl~gGpPCQ~F  182 (482)
T 3me5_A          168 PEHDVLLAGFPCQPF  182 (482)
T ss_dssp             CCCSEEEEECCCCCC
T ss_pred             CCCCEEEecCCCcch
Confidence            238999999997544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.32  E-value=0.00013  Score=57.16  Aligned_cols=88  Identities=14%  Similarity=0.046  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHh--cCCC-eEEEEc-ccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD--LELD-IDFVQC-DIR  106 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~--~~~~-~~~~~~-d~~  106 (216)
                      -++..|.++.......++.+|+|+||+-|.-+..+++. +...|.|.++.... . .. -+..  .|++ +++.++ |+.
T Consensus        57 RAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~-P~~~~~~Gv~~i~~~~G~Df~  133 (269)
T 2px2_A           57 RGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EE-PMLMQSYGWNIVTMKSGVDVF  133 (269)
T ss_dssp             THHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CC-CCCCCSTTGGGEEEECSCCGG
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cC-CCcccCCCceEEEeeccCCcc
Confidence            46677888877764567889999999999999999975 23233444332210 0 00 0110  1222 355557 998


Q ss_pred             cccccccCCCcccEEEEcCCC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~  127 (216)
                      +....  .   +|+|+||..=
T Consensus       134 ~~~~~--~---~DvVLSDMAP  149 (269)
T 2px2_A          134 YKPSE--I---SDTLLCDIGE  149 (269)
T ss_dssp             GSCCC--C---CSEEEECCCC
T ss_pred             CCCCC--C---CCEEEeCCCC
Confidence            74322  3   9999998753

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.15  E-value=0.00027  Score=56.58  Aligned_cols=49  Identities=16%  Similarity=0.060  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCH
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDS   81 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~   81 (216)
                      ++..|.++...-...++.+|||+||+.|..+..+++. +...|+|+|+..
T Consensus        66 aa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           66 GAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             THHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            3445555555522357789999999999999999974 666899999864

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.04  E-value=0.0032  Score=52.60  Aligned_cols=77  Identities=12%  Similarity=-0.024  Sum_probs=49.8

Q ss_pred             CCEEEEecCCcchHHHHHHHc------------------CCCeEEEEeCC-----------HHHHHHHHHHHHhcCC--C
Q 027945           49 NKVVADFGCGCGTLGAAATLL------------------GADQVIAIDID-----------SDSLELASENAADLEL--D   97 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~------------------~~~~v~~~D~~-----------~~~~~~a~~~~~~~~~--~   97 (216)
                      ..+|+|+||++|..++.+...                  +.-.|+..|+-           +...+.++.   ..|.  +
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            469999999999988777653                  12367888875           333333222   1221  1


Q ss_pred             ---eEEEEcccccccccccCCCcccEEEEcCCCCCCC
Q 027945           98 ---IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        98 ---~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~  131 (216)
                         +.-+.+.++.-.++..+   +|+|+++-.+|+..
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S---~d~v~Ss~aLHWls  163 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEES---MHFLHSCYCLHWLS  163 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTC---EEEEEEESCTTBCS
T ss_pred             ceEEEecchhhhhccCCCCc---eEEEEecceeeecC
Confidence               23345556555565556   99999999999973

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.71  E-value=0.0062  Score=51.31  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             CCCCEEEEecCCcchHHHHHH-Hc-C-CCeEEEEeCCHHHHHHHHHHHHh--c-CC--CeEEEEcccc
Q 027945           47 VSNKVVADFGCGCGTLGAAAT-LL-G-ADQVIAIDIDSDSLELASENAAD--L-EL--DIDFVQCDIR  106 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~-~~-~-~~~v~~~D~~~~~~~~a~~~~~~--~-~~--~~~~~~~d~~  106 (216)
                      .++.+++|+||+.|..++.++ +. + .++|+++|.+|..++..+.|++.  | +.  ++++++.-+-
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            467899999999999999888 43 3 36999999999999999999987  3 22  5666554443

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.67  E-value=0.0029  Score=58.89  Aligned_cols=78  Identities=21%  Similarity=0.201  Sum_probs=57.2

Q ss_pred             CCEEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc------------cc-ccC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE------------WR-VCS  114 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~------------~~-~~~  114 (216)
                      ..+++|++||.|.+++-+.+.|. ..+.++|+++.+.+.-+.|..    ...++.+|+.++.            .. ...
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~  615 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP----GSTVFTEDCNILLKLVMAGETTNSRGQRLPQ  615 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT----TSEEECSCHHHHHHHHHHTCSBCTTCCBCCC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC----CCccccccHHHHhhhccchhhhhhhhhhccc
Confidence            34899999999999999988886 578899999999998888854    3466667754321            00 001


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .+.+|+|+.-||-...
T Consensus       616 ~~~vDll~GGpPCQ~F  631 (1002)
T 3swr_A          616 KGDVEMLCGGPPCQGF  631 (1002)
T ss_dssp             TTTCSEEEECCCCTTC
T ss_pred             CCCeeEEEEcCCCcch
Confidence            1349999999997544

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=96.43  E-value=0.0048  Score=51.89  Aligned_cols=45  Identities=11%  Similarity=-0.074  Sum_probs=37.9

Q ss_pred             CCEEEEecCCcchHHHHHHHcC--CCe----EEEEeCCHHHHHHHHHHHHh
Q 027945           49 NKVVADFGCGCGTLGAAATLLG--ADQ----VIAIDIDSDSLELASENAAD   93 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~--~~~----v~~~D~~~~~~~~a~~~~~~   93 (216)
                      ..+++|++||.|++...+.+.|  ..-    |.++|+++.+++.-+.|...
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            3599999999999999888766  334    88999999999988888754

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=96.30  E-value=0.0057  Score=55.79  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=36.6

Q ss_pred             CCCEEEEecCCcchHHHHHHHcC------CCeEEEEeCCHHHHHHHHHHHH
Q 027945           48 SNKVVADFGCGCGTLGAAATLLG------ADQVIAIDIDSDSLELASENAA   92 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~------~~~v~~~D~~~~~~~~a~~~~~   92 (216)
                      +..+++|++||.|+++.=+.+.|      ..-+.++|+++.+++.-+.|..
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            34589999999999987776654      4468899999999999888854

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.20  E-value=0.052  Score=45.10  Aligned_cols=97  Identities=11%  Similarity=-0.012  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhhcCCCC-----CCEEEEecCCcchHHHHHHH--------c--------CCCeEEEEeCCHHHHHHHHHH
Q 027945           32 IASRMLYTAENSFGDVS-----NKVVADFGCGCGTLGAAATL--------L--------GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~-----~~~vLD~g~G~G~~~~~l~~--------~--------~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      .+..++...+..+....     ..+|+|+|||+|..++.+..        .        +.-+|+..|+-..-....=..
T Consensus        31 ~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~  110 (374)
T 3b5i_A           31 SMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQL  110 (374)
T ss_dssp             HHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhh
Confidence            34455555555443322     46999999999998877732        1        223777888643322111111


Q ss_pred             HHhc-------------C---CCeEEEEcccccccccccCCCcccEEEEcCCCCCCC
Q 027945           91 AADL-------------E---LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        91 ~~~~-------------~---~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~  131 (216)
                      +...             +   .-+.-+.+.+..-.++..+   ||+|+++-.+|+..
T Consensus       111 L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S---~d~v~Ss~aLHWls  164 (374)
T 3b5i_A          111 LPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPART---IDFFHSAFSLHWLS  164 (374)
T ss_dssp             SCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTC---EEEEEEESCTTBCS
T ss_pred             hhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcc---eEEEEecceeeeec
Confidence            1110             0   0123345555554555545   99999999999973

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.02  E-value=0.025  Score=44.42  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=61.5

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..+++++|--|++.|.   .+..+++.|+ +|+.+|.+++.++.+.+.++..+.++.++++|+.+...-.       ...
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3578999999988874   4566666666 9999999999999888888887778899999987743211       122


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|+++.|--.
T Consensus        83 G~iDiLVNNAGi   94 (254)
T 4fn4_A           83 SRIDVLCNNAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            459999987653

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.96  E-value=0.014  Score=55.80  Aligned_cols=79  Identities=19%  Similarity=0.184  Sum_probs=57.3

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc------------ccc-c
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE------------WRV-C  113 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~------------~~~-~  113 (216)
                      ...+++|++||.|++++-+.+.|. ..+.++|+++.+++.-+.|..    ...++.+|+.++.            ... .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp  925 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP----GTTVFTEDCNVLLKLVMAGEVTNSLGQRLP  925 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT----TSEEECSCHHHHHHHHTTTCSBCSSCCBCC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC----CCcEeeccHHHHhHhhhccchhhhhhhhcc
Confidence            345899999999999999998875 568899999999998888854    2455666654321            000 0


Q ss_pred             CCCcccEEEEcCCCCCC
Q 027945          114 SVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~  130 (216)
                      ..+.+|+|+.-||....
T Consensus       926 ~~~~vDvl~GGpPCQ~F  942 (1330)
T 3av4_A          926 QKGDVEMLCGGPPCQGF  942 (1330)
T ss_dssp             CTTTCSEEEECCCCTTT
T ss_pred             ccCccceEEecCCCccc
Confidence            11248999999998655

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.61  E-value=0.038  Score=44.25  Aligned_cols=66  Identities=17%  Similarity=0.071  Sum_probs=43.0

Q ss_pred             CCCCCCEEEEecCC------cchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCC
Q 027945           45 GDVSNKVVADFGCG------CGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        45 ~~~~~~~vLD~g~G------~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  116 (216)
                      ..+.+.+|||+|||      .|.  ..+.+.+.  +.|+++|+++-.         .  ..-.++++|+.+....    +
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~---------s--da~~~IqGD~~~~~~~----~  168 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV---------S--DADSTLIGDCATVHTA----N  168 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB---------C--SSSEEEESCGGGEEES----S
T ss_pred             eecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc---------c--CCCeEEEccccccccC----C
Confidence            45678899999983      344  33334433  499999998722         1  1124599998664443    2


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +||+|++|..=
T Consensus       169 k~DLVISDMAP  179 (344)
T 3r24_A          169 KWDLIISDMYD  179 (344)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEecCCC
Confidence            49999998653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.46  E-value=0.14  Score=40.21  Aligned_cols=84  Identities=23%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..+++++|--|++.|.   .+..+++.|+ +|+.+|.+++.++.+.+.+...+.++..+.+|+.+...-.       ...
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            4688999999988874   4566666676 9999999999988888888777778888999987632111       233


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ++.|+++.|--....
T Consensus        85 G~iDiLVNNAG~~~~   99 (255)
T 4g81_D           85 IHVDILINNAGIQYR   99 (255)
T ss_dssp             CCCCEEEECCCCCCC
T ss_pred             CCCcEEEECCCCCCC
Confidence            569999998765443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.42  E-value=0.019  Score=46.02  Aligned_cols=33  Identities=24%  Similarity=0.213  Sum_probs=24.6

Q ss_pred             CeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +.+++++|+.+..... .+++||+|++||||...
T Consensus        21 ~~~i~~gD~~~~l~~l-~~~s~DlIvtdPPY~~~   53 (297)
T 2zig_A           21 VHRLHVGDAREVLASF-PEASVHLVVTSPPYWTL   53 (297)
T ss_dssp             CEEEEESCHHHHHTTS-CTTCEEEEEECCCCCCC
T ss_pred             CCEEEECcHHHHHhhC-CCCceeEEEECCCCCCc
Confidence            5789999999854322 22349999999999754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.77  E-value=0.6  Score=36.25  Aligned_cols=80  Identities=24%  Similarity=0.201  Sum_probs=58.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+...+.++.++.+|+.+...-.       ...+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999987763   4555666666 8999999999888887777776668899999988743211       1123


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|...
T Consensus        88 ~id~lv~nAg~   98 (264)
T 3ucx_A           88 RVDVVINNAFR   98 (264)
T ss_dssp             CCSEEEECCCS
T ss_pred             CCcEEEECCCC
Confidence            58999988643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.73  E-value=0.036  Score=45.05  Aligned_cols=59  Identities=15%  Similarity=0.110  Sum_probs=36.9

Q ss_pred             CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC------------CCHHHHHHHHhhcC--CcEEEEecC
Q 027945           97 DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG------------VDMDFLSMALKVAS--QAVYSLHKT  156 (216)
Q Consensus        97 ~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~------------~~~~~l~~~~~~~~--~~~~~~~~~  156 (216)
                      ...++++|+.+..... ..++||+|++||||......            .....+..+.+.+.  +.+++.+..
T Consensus        14 ~~~ii~gD~~~~l~~l-~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           14 NGSMYIGDSLELLESF-PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SEEEEESCHHHHGGGS-CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CceEEeCcHHHHHhhC-CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            5788999998754332 22359999999999865321            12244555556554  456665554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.38  E-value=0.015  Score=45.82  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=23.5

Q ss_pred             eEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      .+++++|+.+..... ..++||+|++||||...
T Consensus         5 ~~l~~gD~~~~l~~l-~~~~vdlI~~DPPY~~~   36 (260)
T 1g60_A            5 NKIHQMNCFDFLDQV-ENKSVQLAVIDPPYNLS   36 (260)
T ss_dssp             SSEEECCHHHHHHHS-CTTCEEEEEECCCCSSC
T ss_pred             CeEEechHHHHHHhc-cccccCEEEECCCCCCC
Confidence            467899987755433 23359999999999865

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.23  E-value=1.2  Score=34.03  Aligned_cols=81  Identities=19%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++...+.....++..+.++.++.+|+.+...-.       ...++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            56788888876552   3455555565 8999999998888887777776668899999987642111       12245


Q ss_pred             ccEEEEcCCCCC
Q 027945          118 VDTVVMNPPFGT  129 (216)
Q Consensus       118 fD~v~~npp~~~  129 (216)
                      .|.++.|.....
T Consensus        83 id~li~~Ag~~~   94 (247)
T 3lyl_A           83 IDILVNNAGITR   94 (247)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            899998876543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.12  E-value=0.45  Score=38.30  Aligned_cols=98  Identities=21%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             CCCEEEEecCCcchHHHHHH----HcC-CC--eEEEEeCCH--------H-HHHHHHHHHHhc-----C-CCeEEEEccc
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LLG-AD--QVIAIDIDS--------D-SLELASENAADL-----E-LDIDFVQCDI  105 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~~-~~--~v~~~D~~~--------~-~~~~a~~~~~~~-----~-~~~~~~~~d~  105 (216)
                      +.-+|||+|-|+|...+...    +.+ ..  +.+.+|..+        . .-+.........     + +..++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            33589999999998543322    222 22  557777432        1 112222222221     1 1467889999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCC-CC-CHHHHHHHHhhcC
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKK-GV-DMDFLSMALKVAS  147 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~-~~-~~~~l~~~~~~~~  147 (216)
                      .+..... ...++|+++.|+ |.+... .+ ..++++.+.+...
T Consensus       176 ~~~l~~l-~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~  217 (308)
T 3vyw_A          176 RKRIKEV-ENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERID  217 (308)
T ss_dssp             HHHGGGC-CSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEE
T ss_pred             HHHHhhh-cccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhC
Confidence            8866543 223599999997 444322 21 3467888887766

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=93.96  E-value=0.038  Score=45.68  Aligned_cols=79  Identities=13%  Similarity=0.058  Sum_probs=52.5

Q ss_pred             CCEEEEecCCcchHHHHHHHc-----------------CCCeEEEEeCCHHHHHHHHHHHHhc----CC-CeEEEEcccc
Q 027945           49 NKVVADFGCGCGTLGAAATLL-----------------GADQVIAIDIDSDSLELASENAADL----EL-DIDFVQCDIR  106 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~-----------------~~~~v~~~D~~~~~~~~a~~~~~~~----~~-~~~~~~~d~~  106 (216)
                      .-+|+|+||++|..++.+.+.                 +.-.|+..|+-..-...+-.++...    +. -+.-+.+.+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            358999999999776654432                 1237889998665555554444321    11 2344566666


Q ss_pred             cccccccCCCcccEEEEcCCCCCC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      .-.++..+   +|+|+++-..|+.
T Consensus       132 ~rlfp~~S---~d~v~Ss~aLHWl  152 (359)
T 1m6e_X          132 GRLFPRNT---LHFIHSSYSLMWL  152 (359)
T ss_dssp             SCCSCTTC---BSCEEEESCTTBC
T ss_pred             hccCCCCc---eEEEEehhhhhhc
Confidence            66666656   9999999999887

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.75  E-value=1.6  Score=33.57  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.....++..+.++.++.+|+.+...-.       ...+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467889988877663   4455555566 8999999998888887777766668889999987743211       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|+++.|.-...
T Consensus        89 ~id~lv~nAg~~~  101 (256)
T 3gaf_A           89 KITVLVNNAGGGG  101 (256)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            4899998866543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.53  E-value=1.5  Score=34.17  Aligned_cols=82  Identities=27%  Similarity=0.255  Sum_probs=56.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.+            ...++.+...+...+.++.++.+|+.+...-
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence            467889999987663   4455556565 89999987            6667776666666666789999998774321


Q ss_pred             c-------cCCCcccEEEEcCCCCC
Q 027945          112 V-------CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       112 ~-------~~~~~fD~v~~npp~~~  129 (216)
                      .       ...++.|++|.|.....
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~  111 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICP  111 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCc
Confidence            1       01134999998876543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=93.41  E-value=0.38  Score=43.04  Aligned_cols=100  Identities=11%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             CCCEEEEecCCcchHHHHHHHc----------C---CCeEEEEeCCHHHHHHHHH--------------HHHhc-----C
Q 027945           48 SNKVVADFGCGCGTLGAAATLL----------G---ADQVIAIDIDSDSLELASE--------------NAADL-----E   95 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~----------~---~~~v~~~D~~~~~~~~a~~--------------~~~~~-----~   95 (216)
                      +.-+|+|+|.|+|...+.+.+.          .   ..+++.+|..|...+.++.              .+..+     |
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            3359999999999876665542          1   1478999985533333332              22221     1


Q ss_pred             ----------CCeEEEEccccccccccc--CCCcccEEEEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945           96 ----------LDIDFVQCDIRNLEWRVC--SVGHVDTVVMNPPFGTRKKGV-DMDFLSMALKVAS  147 (216)
Q Consensus        96 ----------~~~~~~~~d~~~~~~~~~--~~~~fD~v~~npp~~~~~~~~-~~~~l~~~~~~~~  147 (216)
                                +.++++.+|+.+......  ..+.+|.++.|+.-...+..+ ...++..+.+..+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~  202 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTR  202 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEE
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhC
Confidence                      156789999988665431  123599999997433222222 4567777777765

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.36  E-value=0.081  Score=42.95  Aligned_cols=60  Identities=15%  Similarity=0.203  Sum_probs=36.3

Q ss_pred             CeEEE-EcccccccccccCCCcccEEEEcCCCCCCC-----CCCCH----HHHHHHHhhcC--CcEEEEecCc
Q 027945           97 DIDFV-QCDIRNLEWRVCSVGHVDTVVMNPPFGTRK-----KGVDM----DFLSMALKVAS--QAVYSLHKTS  157 (216)
Q Consensus        97 ~~~~~-~~d~~~~~~~~~~~~~fD~v~~npp~~~~~-----~~~~~----~~l~~~~~~~~--~~~~~~~~~~  157 (216)
                      ..+++ ++|+.+..... .++++|+|++||||....     .....    ..+..+.+.+.  +.+++.+...
T Consensus        38 ~~~l~i~gD~l~~L~~l-~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKL-PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             EEEEEEECCHHHHHHTS-CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             cceEEECCcHHHHHHhC-ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence            35778 99998765433 233599999999998641     11222    34445455554  4566655543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.13  E-value=1.5  Score=35.69  Aligned_cols=103  Identities=15%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC----------------------CCeEEEEcc
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE----------------------LDIDFVQCD  104 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~----------------------~~~~~~~~d  104 (216)
                      +...|+.+|||.......+... +...++-+|. |+.++.-+..+...+                      .+..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4568999999999998888864 3335666666 888888777776541                      267889999


Q ss_pred             ccccccc-----c-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEE
Q 027945          105 IRNLEWR-----V-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVY  151 (216)
Q Consensus       105 ~~~~~~~-----~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~  151 (216)
                      +.+....     . +......++++-....+.........++.+....++..+
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~~~~~  228 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLW  228 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEE
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCCCcEE
Confidence            9874321     1 111247788888887777666666677766665554333

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.00  E-value=0.46  Score=37.45  Aligned_cols=80  Identities=18%  Similarity=0.146  Sum_probs=54.1

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccc-cccc-------cCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL-EWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-~~~~-------~~~  115 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++...+.+...+...+- ++.++.+|+.+. ..-.       ...
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            56788988877552   3444555565 999999999887777666665443 789999999875 2100       011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        90 g~iD~lv~nAg~~  102 (311)
T 3o26_A           90 GKLDILVNNAGVA  102 (311)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            3499999987654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=92.94  E-value=0.79  Score=35.67  Aligned_cols=81  Identities=12%  Similarity=0.061  Sum_probs=55.3

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc--cCCCcccE
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV--CSVGHVDT  120 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~fD~  120 (216)
                      ...++++|--|+++|.   .+..+++.|+ +|+.+|.+..  +.+.+.++..+.++..+.+|+.+...-.  ...++.|+
T Consensus         6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A            6 SLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            4578999999988884   5666677676 8999998753  3334445555667888999987643211  13356999


Q ss_pred             EEEcCCCCC
Q 027945          121 VVMNPPFGT  129 (216)
Q Consensus       121 v~~npp~~~  129 (216)
                      ++.|--...
T Consensus        83 LVNNAGi~~   91 (247)
T 4hp8_A           83 LVNNAGIIR   91 (247)
T ss_dssp             EEECCCCCC
T ss_pred             EEECCCCCC
Confidence            998865433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.90  E-value=1.6  Score=30.15  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             CCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEE
Q 027945           49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVM  123 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~  123 (216)
                      ..+++-+|+|  .++..++    +.|. +|+++|.+++.++.++..      ...++.+|..+...-. ..-..+|+|+.
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE------GFDAVIADPTDESFYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT------TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC------CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence            3578888885  4555444    3455 899999999887776543      3677888887642211 01123899998


Q ss_pred             cCC
Q 027945          124 NPP  126 (216)
Q Consensus       124 npp  126 (216)
                      -.|
T Consensus        77 ~~~   79 (141)
T 3llv_A           77 TGS   79 (141)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            665

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.85  E-value=1.4  Score=34.79  Aligned_cols=79  Identities=22%  Similarity=0.194  Sum_probs=55.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|--|+++|.   .+..+++.|+ +|+.+|.+++.++.+...+   +.++..+.+|+.+...-.       ...+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G  102 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEAG  102 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578899999988874   4566666676 9999999998887665544   346778889987632211       1224


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|--...
T Consensus       103 ~iDiLVNNAG~~~  115 (273)
T 4fgs_A          103 RIDVLFVNAGGGS  115 (273)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            5999998865433

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.84  E-value=0.34  Score=37.96  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ...++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...++..+.++.++.+|+.+...-.       ...
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            3577889988876653   4455555566 8999999998888887777766667888999987643211       112


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|.-..
T Consensus       102 g~iD~lv~nAg~~  114 (271)
T 4ibo_A          102 IDVDILVNNAGIQ  114 (271)
T ss_dssp             CCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3489999886654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.80  E-value=2.9  Score=32.98  Aligned_cols=81  Identities=27%  Similarity=0.336  Sum_probs=55.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+++|.+            +..++.+...++..+.++.++.+|+.+...-
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            467899999987763   4555556566 89999987            6666666666666666889999998774321


Q ss_pred             c-------cCCCcccEEEEcCCCC
Q 027945          112 V-------CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       112 ~-------~~~~~fD~v~~npp~~  128 (216)
                      .       ...++.|++|.|.-..
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCC
Confidence            1       0113499999876643

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.78  E-value=2.6  Score=32.41  Aligned_cols=82  Identities=29%  Similarity=0.363  Sum_probs=57.4

Q ss_pred             CCCCEEEEecC-Ccch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC-CCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGC-GCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~-G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|+ |+|.   +...+++.|. +|+.++.++...+.+...++..+ .++.++.+|+.+...-.       ..
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            46789999997 5653   4566666665 89999999988887777775544 37899999987742111       01


Q ss_pred             CCcccEEEEcCCCCC
Q 027945          115 VGHVDTVVMNPPFGT  129 (216)
Q Consensus       115 ~~~fD~v~~npp~~~  129 (216)
                      .++.|++|.|.-...
T Consensus        99 ~g~id~li~~Ag~~~  113 (266)
T 3o38_A           99 AGRLDVLVNNAGLGG  113 (266)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCcEEEECCCcCC
Confidence            124899999876543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.76  E-value=2.6  Score=33.03  Aligned_cols=80  Identities=20%  Similarity=0.175  Sum_probs=56.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+...+.++.++.+|+.+...-.       ...+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            367789999977663   3455555566 9999999998888877777666657889999987642111       0113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|.-.
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            49999987665

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.69  E-value=0.77  Score=38.22  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=47.4

Q ss_pred             cCCCCCCc--cccccCCCCHHHHH----HHHHHHHh---hcCCCCCCEEEEecCCcchHHHHHHHc--------CCCeEE
Q 027945           13 LEQFSNPK--VELEQYPTGPHIAS----RMLYTAEN---SFGDVSNKVVADFGCGCGTLGAAATLL--------GADQVI   75 (216)
Q Consensus        13 ~~~~~~~~--~~~~~~~t~~~~~~----~~l~~~~~---~~~~~~~~~vLD~g~G~G~~~~~l~~~--------~~~~v~   75 (216)
                      ..+|....  -.-++|-|++++..    -+..++..   ....+..-.|+|+|+|+|.++..+.+.        ...+++
T Consensus        36 ~GYY~~~~~~G~~GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~  115 (387)
T 1zkd_A           36 HGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVH  115 (387)
T ss_dssp             TCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEE
T ss_pred             CcccCCCCCCCCCCCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEE
Confidence            44554321  23456888766432    22223222   223334458999999999998777642        233899


Q ss_pred             EEeCCHHHHHHHHHHHHh
Q 027945           76 AIDIDSDSLELASENAAD   93 (216)
Q Consensus        76 ~~D~~~~~~~~a~~~~~~   93 (216)
                      .+|+|+...+.-++++..
T Consensus       116 iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A          116 LVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             EECCCHHHHHHHHHHSTT
T ss_pred             EEecCHHHHHHHHHHhcC
Confidence            999999887766666654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=92.67  E-value=2.9  Score=32.63  Aligned_cols=81  Identities=25%  Similarity=0.320  Sum_probs=55.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC----------------HHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID----------------SDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~----------------~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.+                ++.++.....+...+.++.++.+|+.+
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   87 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD   87 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence            467899999988763   4555666666 89999987                666666666666556678899999876


Q ss_pred             ccccc-------cCCCcccEEEEcCCCC
Q 027945          108 LEWRV-------CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       108 ~~~~~-------~~~~~fD~v~~npp~~  128 (216)
                      ...-.       ...++.|++|.|.-..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~  115 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIG  115 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            42111       0113499999887654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.61  E-value=2.6  Score=32.56  Aligned_cols=81  Identities=17%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC-CCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...++..+ .++.++.+|+.+...-.       ...
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            467888888876553   3445555566 99999999988888777776655 37889999987743211       011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|.-..
T Consensus        87 g~id~lvnnAg~~   99 (262)
T 3pk0_A           87 GGIDVVCANAGVF   99 (262)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3499999886654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=92.60  E-value=2.2  Score=33.39  Aligned_cols=106  Identities=15%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc--------CCCeEEEEe-----CCH----------------------HHHHHH---
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL--------GADQVIAID-----IDS----------------------DSLELA---   87 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~--------~~~~v~~~D-----~~~----------------------~~~~~a---   87 (216)
                      ..+| .++|+||-.|..+..++..        ...++++.|     ..+                      +.++..   
T Consensus        68 ~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~  146 (257)
T 3tos_A           68 DVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA  146 (257)
T ss_dssp             TSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred             CCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence            3444 7999999999987776642        246999999     221                      011111   


Q ss_pred             HHHHHhcCC---CeEEEEcccccccccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945           88 SENAADLEL---DIDFVQCDIRNLEWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus        88 ~~~~~~~~~---~~~~~~~d~~~~~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      ..+.+..+.   +++++.+++.+.....   ....++|+|+.|.-.    .......+..+..... +.+.++.+-
T Consensus       147 ~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          147 HECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             HHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             HhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence            111122332   7999999999865432   122359999998631    1122334555544443 455555443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.57  E-value=2.6  Score=32.81  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=56.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++...+.....+...+.++.++.+|+.+...-.       ...+
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            467788888876653   3455555566 9999999998888877777766667888899987642111       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|.....
T Consensus       105 ~iD~lvnnAg~~~  117 (270)
T 3ftp_A          105 ALNVLVNNAGITQ  117 (270)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            4899998876543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.55  E-value=1.2  Score=34.74  Aligned_cols=81  Identities=19%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC-
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV-  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~-  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++..++.+...+...+.++.++.+|+.+...-.       ... 
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467889988876552   3444455565 8999999988777666666555557888999987632111       011 


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        98 g~id~lv~nAg~~  110 (273)
T 1ae1_A           98 GKLNILVNNAGVV  110 (273)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCcEEEECCCCC
Confidence            3589999886543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.54  E-value=2.7  Score=32.63  Aligned_cols=84  Identities=25%  Similarity=0.283  Sum_probs=56.3

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      ...++++|-.|++.|.   +...+++.|. +|+++|.+            +..++.....+...+.++.++.+|+.+...
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES   88 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence            3467899999976653   4455556566 89999987            666666666666556678999999876321


Q ss_pred             cc-------cCCCcccEEEEcCCCCCC
Q 027945          111 RV-------CSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       111 ~~-------~~~~~fD~v~~npp~~~~  130 (216)
                      -.       ...++.|++|.|.-....
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~~~  115 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIAPM  115 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            11       011349999988765433

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.40  E-value=0.19  Score=42.45  Aligned_cols=82  Identities=17%  Similarity=0.330  Sum_probs=49.3

Q ss_pred             ccCCCCCCcc-------ccccCCCCHHHHH----HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----C--CCeE
Q 027945           12 DLEQFSNPKV-------ELEQYPTGPHIAS----RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G--ADQV   74 (216)
Q Consensus        12 ~~~~~~~~~~-------~~~~~~t~~~~~~----~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~--~~~v   74 (216)
                      +..+|.....       +-++|-|++++..    -+-.++...........|+|+|+|+|.+...+.+.    +  ..++
T Consensus        90 ~~GYY~~~~~~~G~~~~~~GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y  169 (432)
T 4f3n_A           90 GMGYYSGGAQKFGRRADDGSDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEY  169 (432)
T ss_dssp             TTSSSCC-------------CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEE
T ss_pred             CCCcccCCCCCCCCCCCCCCCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceE
Confidence            3456655433       3457889877533    22222222211122469999999999987776642    2  3489


Q ss_pred             EEEeCCHHHHHHHHHHHHh
Q 027945           75 IAIDIDSDSLELASENAAD   93 (216)
Q Consensus        75 ~~~D~~~~~~~~a~~~~~~   93 (216)
                      +.+|+|+...+.-++++..
T Consensus       170 ~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          170 AIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             EEECTTSSSHHHHHHHHHH
T ss_pred             EEEEcCHHHHHHHHHHHhc
Confidence            9999999887777777653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.39  E-value=0.89  Score=31.63  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=43.4

Q ss_pred             CEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEc
Q 027945           50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMN  124 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~n  124 (216)
                      .+++=+|||  .++..++    +.|. +|+++|.+++.++.++..      .+.++.+|..+...-. ..-..+|+|++-
T Consensus         8 ~~viIiG~G--~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            8 NHALLVGYG--RVGSLLGEKLLASDI-PLVVIETSRTRVDELRER------GVRAVLGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT------TCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCEEEECcC--HHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc------CCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence            468888875  4444333    3455 899999999988877652      4678889986632111 011138999975


Q ss_pred             CC
Q 027945          125 PP  126 (216)
Q Consensus       125 pp  126 (216)
                      .|
T Consensus        79 ~~   80 (140)
T 3fwz_A           79 IP   80 (140)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=92.34  E-value=1.1  Score=34.47  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC-
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV-  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~-  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++...+.....+...+.++.++.+|+.+...-.       ... 
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            356789988876552   3444455565 8999999988777666655554556888899987642110       011 


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        86 g~id~lv~~Ag~~   98 (260)
T 2ae2_A           86 GKLNILVNNAGIV   98 (260)
T ss_dssp             TCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3499999876543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.34  E-value=0.33  Score=40.32  Aligned_cols=45  Identities=36%  Similarity=0.370  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|||. |.+.+.+++. |..+|+++|.+++.++.++.
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            456788999999875 7777777764 66699999999988887754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.26  E-value=0.52  Score=36.39  Aligned_cols=81  Identities=17%  Similarity=0.080  Sum_probs=58.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...++..+.++.++.+|+.+...-.       .. +
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g   82 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-A   82 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-C
Confidence            367789999987663   4455556666 8999999998888887777766667899999987632111       11 3


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|.-...
T Consensus        83 ~id~lv~nAg~~~   95 (252)
T 3h7a_A           83 PLEVTIFNVGANV   95 (252)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             CceEEEECCCcCC
Confidence            4899998876543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=92.10  E-value=0.79  Score=35.93  Aligned_cols=80  Identities=15%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++..++.+...+...+.++.++.+|+.+...-.       ...++
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46789998877653   3455555565 8999999998888887777766668899999987643111       01134


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|++|.|....
T Consensus       102 id~lv~nAg~~  112 (279)
T 3sju_A          102 IGILVNSAGRN  112 (279)
T ss_dssp             CCEEEECCCCC
T ss_pred             CcEEEECCCCC
Confidence            89999887654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=92.08  E-value=0.94  Score=35.94  Aligned_cols=82  Identities=26%  Similarity=0.324  Sum_probs=59.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+...+.++.++.+|+.+...-.       ...+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            467899999987663   4455555565 8999999999888887777776668899999988743211       0112


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|..+..
T Consensus       108 ~id~lvnnAg~~~  120 (301)
T 3tjr_A          108 GVDVVFSNAGIVV  120 (301)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCCcCC
Confidence            4899999876543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=92.05  E-value=0.31  Score=40.07  Aligned_cols=67  Identities=21%  Similarity=0.237  Sum_probs=41.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc---cccCCCcccEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW---RVCSVGHVDTVV  122 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~~fD~v~  122 (216)
                      +..+|+-+||  |.++..+++.  ...+|+..|++...++.++..       +..+..|+.+...   ....   .|+|+
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~d~~~l~~~~~~---~DvVi   82 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEF-------ATPLKVDASNFDKLVEVMKE---FELVI   82 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTT-------SEEEECCTTCHHHHHHHHTT---CSEEE
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcc-------CCcEEEecCCHHHHHHHHhC---CCEEE
Confidence            3458999998  5555444431  234899999998887766433       4556777765321   1123   89999


Q ss_pred             EcCC
Q 027945          123 MNPP  126 (216)
Q Consensus       123 ~npp  126 (216)
                      .-.|
T Consensus        83 ~~~p   86 (365)
T 3abi_A           83 GALP   86 (365)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            6444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=91.93  E-value=0.88  Score=30.05  Aligned_cols=73  Identities=19%  Similarity=0.244  Sum_probs=45.9

Q ss_pred             CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...+|+-+|+  |.++..++    +.|..+|+++|.++...+.+.    .  ..+.++..|..+...-...-..+|+|+.
T Consensus         4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~--~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R--MGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T--TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h--CCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            3468999988  65555544    346358999999988776655    1  1467777887653211100013899998


Q ss_pred             cCCCC
Q 027945          124 NPPFG  128 (216)
Q Consensus       124 npp~~  128 (216)
                      ..|+.
T Consensus        76 ~~~~~   80 (118)
T 3ic5_A           76 AAPFF   80 (118)
T ss_dssp             CSCGG
T ss_pred             CCCch
Confidence            77643

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.74  E-value=2  Score=33.67  Aligned_cols=80  Identities=19%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++. ++...+.....+...+.++.++.+|+.+...-.       ...
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            467889988877663   4455556566 8999995 777777776666666668899999988743211       011


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|++|.|...
T Consensus       106 g~iD~lvnnAg~  117 (280)
T 4da9_A          106 GRIDCLVNNAGI  117 (280)
T ss_dssp             SCCCEEEEECC-
T ss_pred             CCCCEEEECCCc
Confidence            348999988754

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=91.72  E-value=3.7  Score=31.83  Aligned_cols=82  Identities=22%  Similarity=0.296  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-------------CHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-------------DSDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-------------~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.             ++..++.....+...+.++.++.+|+.+...
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            467899999987663   4555566666 8999998             6677776666666656678899999877431


Q ss_pred             cc-------cCCCcccEEEEcCCCCC
Q 027945          111 RV-------CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       111 ~~-------~~~~~fD~v~~npp~~~  129 (216)
                      -.       ...++.|++|.|.-...
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            11       01134999998876543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.69  E-value=1  Score=34.42  Aligned_cols=80  Identities=25%  Similarity=0.261  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...+...+.++.++.+|+.+...-.       ...+
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            467889988876552   4455555565 8999999999888887777666657888999987743111       0112


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|...
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            48999988754

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.60  E-value=3.4  Score=31.06  Aligned_cols=80  Identities=23%  Similarity=0.216  Sum_probs=52.3

Q ss_pred             CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH-hcCCCeEEEEcccccccccc-------cCCCc
Q 027945           49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAA-DLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      ++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+. ..+.++.++.+|+.+...-.       ...++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            4678888876542   3444445565 89999999887777665554 44557889999987643111       01134


Q ss_pred             ccEEEEcCCCCC
Q 027945          118 VDTVVMNPPFGT  129 (216)
Q Consensus       118 fD~v~~npp~~~  129 (216)
                      .|+++.|.....
T Consensus        81 id~li~~Ag~~~   92 (235)
T 3l77_A           81 VDVVVANAGLGY   92 (235)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEECCcccc
Confidence            899998876543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.51  E-value=0.61  Score=38.21  Aligned_cols=46  Identities=30%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|||. |...+.+++. |..+|+++|.+++.++.++..
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            456788999999875 6777777764 665799999999998888654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=91.48  E-value=0.93  Score=34.99  Aligned_cols=80  Identities=25%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...++..+.++.++.+|+.+...-.       ...+
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            467788888876552   3445555565 8999999999888887777665557889999987632111       0113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|.-.
T Consensus        83 ~id~lv~nAg~   93 (257)
T 3imf_A           83 RIDILINNAAG   93 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            48999987654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.43  E-value=4.4  Score=32.26  Aligned_cols=82  Identities=24%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+++|.+            +..++.....+...+.++.++.+|+.+...-
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL  122 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            467889988887663   4455556566 99999986            6666666666666666788999998763311


Q ss_pred             c-------cCCCcccEEEEcCCCCC
Q 027945          112 V-------CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       112 ~-------~~~~~fD~v~~npp~~~  129 (216)
                      .       ...++.|++|.|.-...
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~~~  147 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGISN  147 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCC
Confidence            1       01134999998866543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=91.31  E-value=1.7  Score=33.49  Aligned_cols=80  Identities=20%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++..++.....+...+.++.++.+|+.+...-.       ...+
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            467788888866542   3344445565 9999999988777666666555557888889987632110       0112


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|...
T Consensus        91 ~iD~lv~~Ag~  101 (260)
T 2zat_A           91 GVDILVSNAAV  101 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            48999987654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.29  E-value=3.8  Score=31.84  Aligned_cols=81  Identities=22%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~-------~  113 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++..++.....+...+.   ++.++.+|+.+...-.       .
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   82 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence            356788888866552   3444455565 899999998877776666655444   6888999987642111       0


Q ss_pred             CCCcccEEEEcCCCC
Q 027945          114 SVGHVDTVVMNPPFG  128 (216)
Q Consensus       114 ~~~~fD~v~~npp~~  128 (216)
                      ..++.|++|.|....
T Consensus        83 ~~g~iD~lv~nAg~~   97 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAA   97 (280)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             hcCCCCEEEECCCCC
Confidence            112489999886543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=91.14  E-value=0.65  Score=38.45  Aligned_cols=45  Identities=33%  Similarity=0.336  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|||. |.+++.+++. |+.+|+++|.+++.++.++.
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            456788999999864 6777777764 66589999999998888865

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.09  E-value=1.1  Score=34.53  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=55.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....+...+.++.++.+|+.+...-.       ...+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            467889988876552   3344445565 8999999998888887777766667889999987643211       0113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|.+|.|...
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            48999988765

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=90.90  E-value=1.2  Score=34.80  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...++..+.++.++.+|+.+...-.       ...++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45788888877653   3455555565 8999999998888887777766667888899987632111       01134


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|++|.|.-..
T Consensus        82 iD~lVnnAG~~   92 (264)
T 3tfo_A           82 IDVLVNNAGVM   92 (264)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999887654

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=90.83  E-value=1.8  Score=32.97  Aligned_cols=80  Identities=23%  Similarity=0.204  Sum_probs=51.2

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++. ++...+.+...++..+.++.++.+|+.+...-.       ...+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46788877765442   3344444565 8999998 877776666666555557888899987642111       0112


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus        82 ~id~lv~nAg~~   93 (246)
T 2uvd_A           82 QVDILVNNAGVT   93 (246)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            489999876654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=90.82  E-value=3.3  Score=32.66  Aligned_cols=81  Identities=19%  Similarity=0.148  Sum_probs=55.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC-CCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE-LDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...+...+ .++.++.+|+.+...-.       ...
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            467788888876653   4455555566 99999999888877777776655 37889999988742110       111


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|.-..
T Consensus       118 g~iD~lvnnAg~~  130 (293)
T 3rih_A          118 GALDVVCANAGIF  130 (293)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3489999876654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=90.75  E-value=2.1  Score=33.66  Aligned_cols=62  Identities=15%  Similarity=0.003  Sum_probs=43.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEe-CCHHHHHHHHHHHH-hcCCCeEEEEccccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAID-IDSDSLELASENAA-DLELDIDFVQCDIRNLE  109 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D-~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~  109 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++ .++..++.+...+. ..+.++.++.+|+.+..
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            356788888876552   3444455565 899999 99887777666654 44557888999987654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=90.62  E-value=1.9  Score=33.10  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945           49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV  118 (216)
Q Consensus        49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f  118 (216)
                      ++++|-.|++.|.   +...+++.|. +|++++.++...+.....+...+.++.++.+|+.+...-.       ...++.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            3577878865542   3344445565 8999999988777666666554556888999987642111       011349


Q ss_pred             cEEEEcCCC
Q 027945          119 DTVVMNPPF  127 (216)
Q Consensus       119 D~v~~npp~  127 (216)
                      |++|.|.-.
T Consensus        81 d~lv~nAg~   89 (256)
T 1geg_A           81 DVIVNNAGV   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999988754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=90.51  E-value=1.1  Score=35.14  Aligned_cols=83  Identities=24%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ...++++|-.|++.|.   +...+++.|. +|+.++.++...+.....+...+.++.++.+|+.+...-.       ...
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4577899999987653   4455555565 8999999988888777777766667888999987643211       011


Q ss_pred             CcccEEEEcCCCCC
Q 027945          116 GHVDTVVMNPPFGT  129 (216)
Q Consensus       116 ~~fD~v~~npp~~~  129 (216)
                      ++.|++|.|.-...
T Consensus       108 g~iD~lvnnAg~~~  121 (276)
T 3r1i_A          108 GGIDIAVCNAGIVS  121 (276)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            34999998876543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=90.44  E-value=4.9  Score=30.92  Aligned_cols=82  Identities=20%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-cCC-CeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-LEL-DIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~-~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+.. .+. ++.++.+|+.+...-.       ..
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            467889999987663   4455556666 899999999888777766654 333 5888999987743111       01


Q ss_pred             CCcccEEEEcCCCCC
Q 027945          115 VGHVDTVVMNPPFGT  129 (216)
Q Consensus       115 ~~~fD~v~~npp~~~  129 (216)
                      .++.|++|.|.....
T Consensus        85 ~g~id~lvnnAg~~~   99 (265)
T 3lf2_A           85 LGCASILVNNAGQGR   99 (265)
T ss_dssp             HCSCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            134899998876543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=90.40  E-value=1.8  Score=33.01  Aligned_cols=79  Identities=20%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---cCCCccc
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---CSVGHVD  119 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~fD  119 (216)
                      ..+++++|-.|++.|.   +...+++.|. +|+.++.++..++.....+..   ++.+..+|+.+...-.   ...++.|
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKD---NYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCS---SEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhcc---CccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            4577899988876652   3445555565 899999998877766555432   5788888887632111   1113499


Q ss_pred             EEEEcCCCC
Q 027945          120 TVVMNPPFG  128 (216)
Q Consensus       120 ~v~~npp~~  128 (216)
                      +++.|....
T Consensus        87 ~li~~Ag~~   95 (249)
T 3f9i_A           87 ILVCNAGIT   95 (249)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCC
Confidence            999887654

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=90.39  E-value=1.9  Score=32.80  Aligned_cols=80  Identities=24%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---c----CC
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---C----SV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~----~~  115 (216)
                      ..++++|-.|+ +|.++..++    +.|. +|++++.++...+.....++..+.++.++.+|+.+...-.   .    ..
T Consensus         9 ~~~~~vlVtGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A            9 LDGKCAIITGA-GAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             CTTCEEEETTT-TSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECC-ccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35678887775 455555554    3454 8999999988777666666555557888899987632111   0    01


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|.||.+....
T Consensus        87 ~~~d~vi~~Ag~~   99 (255)
T 1fmc_A           87 GKVDILVNNAGGG   99 (255)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            2389999876543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.37  E-value=4.8  Score=31.69  Aligned_cols=81  Identities=23%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~-------~  113 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++..++.....+...+.   ++.++.+|+.+...-.       .
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            356788888876552   3344445565 899999998877776666655444   6888999987642111       0


Q ss_pred             CCCcccEEEEcCCCC
Q 027945          114 SVGHVDTVVMNPPFG  128 (216)
Q Consensus       114 ~~~~fD~v~~npp~~  128 (216)
                      ..++.|++|.|....
T Consensus       103 ~~g~iD~lvnnAG~~  117 (297)
T 1xhl_A          103 KFGKIDILVNNAGAN  117 (297)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             hcCCCCEEEECCCcC
Confidence            112489999887643

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.34  E-value=1.6  Score=34.65  Aligned_cols=80  Identities=21%  Similarity=0.301  Sum_probs=46.0

Q ss_pred             CCCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ....++++|-+|+| |.   ....+++.|..+|+.++.+++..+.....+......+.+...+..+.......   +|+|
T Consensus       123 ~~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiV  198 (283)
T 3jyo_A          123 PNAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGV  198 (283)
T ss_dssp             TTCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEE
T ss_pred             cCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEE
Confidence            34678899999997 32   23445556777899999998776655444443221222222232222211113   8988


Q ss_pred             EEcCCCC
Q 027945          122 VMNPPFG  128 (216)
Q Consensus       122 ~~npp~~  128 (216)
                      |.--|.+
T Consensus       199 InaTp~G  205 (283)
T 3jyo_A          199 VNATPMG  205 (283)
T ss_dssp             EECSSTT
T ss_pred             EECCCCC
Confidence            8655543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=90.28  E-value=5.3  Score=31.13  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=53.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+++|.++...+.+...+   +.++.++.+|+.+...-.       ...+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAFG  102 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467889998887663   4555566666 9999999988776665544   446888999987743211       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|.....
T Consensus       103 ~iD~lvnnAg~~~  115 (277)
T 3gvc_A          103 GVDKLVANAGVVH  115 (277)
T ss_dssp             SCCEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            4899998876543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=90.22  E-value=0.99  Score=36.41  Aligned_cols=44  Identities=30%  Similarity=0.369  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-.|+|. |...+.+++. |. +|+++|.+++..+.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            456788999999874 7788888865 55 99999999998888765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.21  E-value=1.7  Score=33.34  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccc--cccccc-------cc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI--RNLEWR-------VC  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~--~~~~~~-------~~  113 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+...+. ++.++..|+  .+...-       ..
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            467889988876652   3445555566 899999998888777666554333 678888888  332110       01


Q ss_pred             CCCcccEEEEcCCC
Q 027945          114 SVGHVDTVVMNPPF  127 (216)
Q Consensus       114 ~~~~fD~v~~npp~  127 (216)
                      ..++.|++|.|.-.
T Consensus        89 ~~g~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYPRLDGVLHNAGL  102 (252)
T ss_dssp             HCSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence            12359999988764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=90.19  E-value=1.5  Score=33.97  Aligned_cols=81  Identities=14%  Similarity=0.068  Sum_probs=53.4

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC--CCeEEEEcccccccccc---cCCCcc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWRV---CSVGHV  118 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~---~~~~~f  118 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.....+...+  ..+.++.+|+.+...-.   ...++.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            467789988876552   3445555565 89999999888777666665442  25778888887632111   122349


Q ss_pred             cEEEEcCCCC
Q 027945          119 DTVVMNPPFG  128 (216)
Q Consensus       119 D~v~~npp~~  128 (216)
                      |+++.|....
T Consensus        87 d~lv~nAg~~   96 (267)
T 3t4x_A           87 DILINNLGIF   96 (267)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999876654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.10  E-value=2.1  Score=33.31  Aligned_cols=82  Identities=22%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-------------CHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-------------DSDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-------------~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+++|.             ++..++.+...+...+.++.++.+|+.+...
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            477889999987663   4555556666 8999998             6777777777777666678899999876321


Q ss_pred             cc-------cCCCcccEEEEcCCCCC
Q 027945          111 RV-------CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       111 ~~-------~~~~~fD~v~~npp~~~  129 (216)
                      -.       ...++.|++|.|.-...
T Consensus        92 v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            11       01134999998866543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.10  E-value=1.8  Score=33.13  Aligned_cols=78  Identities=22%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             CCCEEEEecCCcchHHHHHH----H-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           48 SNKVVADFGCGCGTLGAAAT----L-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      +++++|-.|+ +|.++..++    + .|. +|++++.++...+.+...+...+.++.++.+|+.+...-.       ...
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4578887775 455554444    4 455 8999999988777766666655557888999987632111       001


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|+||.+...
T Consensus        81 g~id~li~~Ag~   92 (276)
T 1wma_A           81 GGLDVLVNNAGI   92 (276)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            238999987654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=90.09  E-value=1.2  Score=34.83  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++...+.....+...+ ++.++.+|+.+...-.       ...+
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            356789988876552   3444455565 89999999887776665555444 6788888987632110       1113


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus       105 ~iD~lvnnAg~~  116 (276)
T 2b4q_A          105 RLDILVNNAGTS  116 (276)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            489999886543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=90.07  E-value=2.3  Score=32.69  Aligned_cols=79  Identities=18%  Similarity=0.109  Sum_probs=51.2

Q ss_pred             CCCCEEEEecCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC-
Q 027945           47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS-  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~-  114 (216)
                      ..++++|-.|++. .++..+    ++.|. +|++++.++...+.....+...+.++.++.+|+.+...-.       .. 
T Consensus        12 l~~k~vlITGasg-giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           12 LKAKTVLVTGGTK-GIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             CTTCEEEETTTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            3567888877654 444444    44465 8999999988777666666555557888999987632110       00 


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .++.|++|.|...
T Consensus        90 ~~~id~li~~Ag~  102 (266)
T 1xq1_A           90 GGKLDILINNLGA  102 (266)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCCcEEEECCCC
Confidence            0348999987654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=90.00  E-value=2.2  Score=32.55  Aligned_cols=81  Identities=17%  Similarity=0.177  Sum_probs=54.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+...+.++.++.+|+.+...-.       ...+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356789988876552   3444555565 8999999988877776666555557888999987632111       0112


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus        84 ~id~lv~nAg~~   95 (247)
T 2jah_A           84 GLDILVNNAGIM   95 (247)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            489999876543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.86  E-value=2.2  Score=33.07  Aligned_cols=80  Identities=23%  Similarity=0.290  Sum_probs=54.0

Q ss_pred             CCCCEEEEecCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++ |.++..+    ++.|. +|++++.++...+.....++..+.++.++.+|+.+...-.       ...
T Consensus        29 l~~k~vlITGas-ggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           29 VTGEIVLITGAG-HGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            466788888865 4444444    44465 8999999988877776666655557889999987632110       011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|+||.+....
T Consensus       107 g~iD~li~~Ag~~  119 (272)
T 1yb1_A          107 GDVSILVNNAGVV  119 (272)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCcEEEECCCcC
Confidence            3489999887654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=89.80  E-value=1  Score=35.25  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=56.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc------cCCCc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV------CSVGH  117 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~  117 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...+...+.++.++.+|+.+...-.      ...++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            467889988877653   3455555566 8999999988877777777666667889999987642111      00134


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|++|.|.-..
T Consensus       110 iD~lvnnAg~~  120 (275)
T 4imr_A          110 VDILVINASAQ  120 (275)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999887653

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=89.71  E-value=2.4  Score=32.69  Aligned_cols=80  Identities=19%  Similarity=0.299  Sum_probs=53.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....+...+.++.++.+|+.+...-.       ...+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            356789988876552   3444455565 8999999988877766666655557888999987642110       0112


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|...
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            48999988654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.68  E-value=3.2  Score=29.97  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=42.0

Q ss_pred             CCCEEEEecCCcchHHHHHH----Hc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-ccc-CCCcccE
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RVC-SVGHVDT  120 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~-~~~~fD~  120 (216)
                      .+.+|+-+|+|  .++..++    +. |. +|+++|.+++.++.++..      .+.++.+|..+... ... .-..+|+
T Consensus        38 ~~~~v~IiG~G--~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~------g~~~~~gd~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           38 GHAQVLILGMG--RIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE------GRNVISGDATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             TTCSEEEECCS--HHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT------TCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred             CCCcEEEECCC--HHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC------CCCEEEcCCCCHHHHHhccCCCCCCE
Confidence            35578888765  4444433    34 54 899999999887765532      35667777654221 110 0123899


Q ss_pred             EEEcCC
Q 027945          121 VVMNPP  126 (216)
Q Consensus       121 v~~npp  126 (216)
                      |+.-.|
T Consensus       109 vi~~~~  114 (183)
T 3c85_A          109 VLLAMP  114 (183)
T ss_dssp             EEECCS
T ss_pred             EEEeCC
Confidence            997444

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=89.64  E-value=2  Score=33.18  Aligned_cols=82  Identities=20%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             CCCCCEEEEecCCc--c--h-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc-------
Q 027945           46 DVSNKVVADFGCGC--G--T-LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV-------  112 (216)
Q Consensus        46 ~~~~~~vLD~g~G~--G--~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-------  112 (216)
                      ..+++++|-.|+++  |  . .+..+++.|+ +|+.++.++...+.+.+.++..+- ++.++.+|+.+...-.       
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            35789999999643  4  2 4566667676 999999999888888777766543 7888999987632111       


Q ss_pred             cCCCcccEEEEcCCCC
Q 027945          113 CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~  128 (216)
                      ...++.|.++.|-.+.
T Consensus        82 ~~~G~iD~lvnnAg~~   97 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFA   97 (256)
T ss_dssp             HHHCCCSEEEECCCCC
T ss_pred             HHhCCCCEEEeccccc
Confidence            1224599999886553

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=89.62  E-value=2  Score=33.49  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=55.4

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~-------~  113 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.++...+.+...++..+.   ++.++.+|+.+...-.       .
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            467889998876653   3455555566 899999999888887777766554   6788999987643111       0


Q ss_pred             CCCcccEEEEcCCC
Q 027945          114 SVGHVDTVVMNPPF  127 (216)
Q Consensus       114 ~~~~fD~v~~npp~  127 (216)
                      ..++.|+++.|.-.
T Consensus        88 ~~g~id~lv~nAg~  101 (281)
T 3svt_A           88 WHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            11348999987664

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=89.60  E-value=2.4  Score=32.31  Aligned_cols=80  Identities=28%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             CCCCEEEEecCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++ |.++..+    ++.|. +|++++.++...+.....++..+.++.++.+|+.+...-.       ...
T Consensus        11 l~~k~vlItGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           11 LDNRVAIVTGGA-QNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            356788888865 4444444    44465 8999999987776666666555557889999987642111       001


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|.||.+....
T Consensus        89 ~~id~vi~~Ag~~  101 (260)
T 3awd_A           89 GRVDILVACAGIC  101 (260)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            2489999876543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=89.60  E-value=2  Score=34.49  Aligned_cols=95  Identities=13%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC----CeEEEEcccccccccc----cC--CCccc
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLEWRV----CS--VGHVD  119 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~----~~--~~~fD  119 (216)
                      ..|+++|||.=.....+..-....++=+| .|..++..+..+...+.    +..++.+|+.+ ....    ..  ....=
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            57999999988876665531235888899 59999999999975432    57788999887 2211    11  01244


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhc
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVA  146 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~  146 (216)
                      ++++....++.........++.+....
T Consensus       182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~  208 (310)
T 2uyo_A          182 AWLAEGLLMYLPATAQDGLFTEIGGLS  208 (310)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTC
T ss_pred             EEEEechHhhCCHHHHHHHHHHHHHhC
Confidence            777777777765555556777776654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=89.50  E-value=2.9  Score=33.57  Aligned_cols=61  Identities=15%  Similarity=0.012  Sum_probs=42.4

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEe-CCHHHHHHHHHHHH-hcCCCeEEEEccccccc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAID-IDSDSLELASENAA-DLELDIDFVQCDIRNLE  109 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D-~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~  109 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++ .++..++.+...+. ..+.++.++.+|+.+..
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA  110 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCch
Confidence            56788888876552   3444445565 899999 99887777666554 34447888999987654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=89.42  E-value=6.1  Score=30.78  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=54.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhc-CCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADL-ELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++. ++...+.....+... +.++.++.+|+.+...-.       ..
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            467889999977663   4455556666 8999998 666666666555543 347888999987632111       11


Q ss_pred             CCcccEEEEcCCCCC
Q 027945          115 VGHVDTVVMNPPFGT  129 (216)
Q Consensus       115 ~~~fD~v~~npp~~~  129 (216)
                      .++.|++|.|.....
T Consensus       102 ~g~iD~lv~nAg~~~  116 (281)
T 3v2h_A          102 FGGADILVNNAGVQF  116 (281)
T ss_dssp             TSSCSEEEECCCCCC
T ss_pred             CCCCCEEEECCCCCC
Confidence            234999998876543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=89.38  E-value=0.99  Score=35.47  Aligned_cols=80  Identities=16%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++..++.+...+...+.++.++.+|+.+...-.       ...+
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467889988877663   4455556566 8999999998888877777665557888999987642111       0113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|...
T Consensus        85 ~iD~lvnnAg~   95 (280)
T 3tox_A           85 GLDTAFNNAGA   95 (280)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            49999988754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=89.33  E-value=2  Score=33.28  Aligned_cols=82  Identities=20%  Similarity=0.244  Sum_probs=56.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+.. .+.++.++.+|+.+...-.       ...
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            467888988877653   4455555566 899999998888777666654 4557899999988743211       011


Q ss_pred             CcccEEEEcCCCCC
Q 027945          116 GHVDTVVMNPPFGT  129 (216)
Q Consensus       116 ~~fD~v~~npp~~~  129 (216)
                      ++.|++|.|.-...
T Consensus        97 g~id~lv~nAg~~~  110 (266)
T 4egf_A           97 GGLDVLVNNAGISH  110 (266)
T ss_dssp             TSCSEEEEECCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            34999998876543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=89.32  E-value=6.3  Score=30.53  Aligned_cols=82  Identities=17%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC------------HHHHHHHHHHHHhcCCCeEEEEccccccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID------------SDSLELASENAADLELDIDFVQCDIRNLEWR  111 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~  111 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.+            ...++.....+...+.++.++.+|+.+...-
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            467899999977663   3455555566 89999986            5566666566666566788999998764211


Q ss_pred             c-------cCCCcccEEEEcCCCCC
Q 027945          112 V-------CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       112 ~-------~~~~~fD~v~~npp~~~  129 (216)
                      .       ...++.|++|.|.-...
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~  111 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGIST  111 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCC
Confidence            1       01134999998876543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=89.32  E-value=5.6  Score=30.27  Aligned_cols=79  Identities=22%  Similarity=0.244  Sum_probs=52.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.....+   +.++.++.+|+.+...-.       ...+
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQALTG   79 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            467889999977663   4455555566 8999999987776665544   446888899987632111       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|.....
T Consensus        80 ~id~lv~nAg~~~   92 (247)
T 3rwb_A           80 GIDILVNNASIVP   92 (247)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            4999998876543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=89.30  E-value=2.2  Score=33.62  Aligned_cols=81  Identities=17%  Similarity=0.103  Sum_probs=54.3

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------c
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGA--DQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~  113 (216)
                      .++++|-.|++.|.   +...+++.|.  .+|+.++.++..++.+...+...  +.++.++.+|+.+...-.       .
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            56789999977653   3344444443  38999999998888777766553  346888999987643211       1


Q ss_pred             CCCcccEEEEcCCCC
Q 027945          114 SVGHVDTVVMNPPFG  128 (216)
Q Consensus       114 ~~~~fD~v~~npp~~  128 (216)
                      ..++.|++|.|.-..
T Consensus       112 ~~g~iD~lVnnAG~~  126 (287)
T 3rku_A          112 EFKDIDILVNNAGKA  126 (287)
T ss_dssp             GGCSCCEEEECCCCC
T ss_pred             hcCCCCEEEECCCcC
Confidence            123599999887643

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=89.28  E-value=2.6  Score=32.85  Aligned_cols=80  Identities=19%  Similarity=0.207  Sum_probs=53.1

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++...+.+...++..+.++.++.+|+.+...-.       ...++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            56789988876552   3344445565 8999999988777666666555557888999987632110       11134


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|++|.|....
T Consensus       100 iD~lv~~Ag~~  110 (277)
T 2rhc_B          100 VDVLVNNAGRP  110 (277)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=89.27  E-value=2.3  Score=34.02  Aligned_cols=81  Identities=21%  Similarity=0.152  Sum_probs=56.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++...+.+...+...+.  ++.++.+|+.+...-.       ..
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            467789999987663   4455555566 899999999888887777765554  6889999987732111       11


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .+..|++|.|....
T Consensus        85 ~g~id~lv~nAg~~   98 (319)
T 3ioy_A           85 FGPVSILCNNAGVN   98 (319)
T ss_dssp             TCCEEEEEECCCCC
T ss_pred             CCCCCEEEECCCcC
Confidence            13489999887654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.22  E-value=2.9  Score=32.97  Aligned_cols=80  Identities=18%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             CCCCEEEEecCCcc-----hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCG-----TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G-----~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|     .+...+++.|. +|+.++.++...+.++...+..+ ++.++.+|+.+...-.       ..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG-AFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CceEEECCCCCHHHHHHHHHHHHHh
Confidence            47789999997733     24555666666 89999999766555555544433 5788899987642111       11


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .++.|++|.|.-..
T Consensus       107 ~g~iD~lVnnAG~~  120 (293)
T 3grk_A          107 WGKLDFLVHAIGFS  120 (293)
T ss_dssp             TSCCSEEEECCCCC
T ss_pred             cCCCCEEEECCccC
Confidence            23599999887654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.21  E-value=0.98  Score=36.67  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|+|. |..++.+++. |..+|+++|.+++.++.+++.
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            456788999999874 6667777765 555899999999888888764

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=89.17  E-value=2.2  Score=32.79  Aligned_cols=79  Identities=16%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHH--HHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDS--LELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~--~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ++++|-.|++.|.   +...+++.|. +|++++.++..  ++.....++..+.++.++.+|+.+...-.       ...+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4678888866552   3444455565 89999998776  55555555544557888999987642111       0112


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus        81 ~iD~lv~nAg~~   92 (258)
T 3a28_C           81 GFDVLVNNAGIA   92 (258)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            489999887653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=89.13  E-value=2.6  Score=31.94  Aligned_cols=81  Identities=17%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc---------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV---------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~---------~  113 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...++..+. +..++..|+.......         .
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            467889988876552   3444555565 899999999888888777766553 6777777762211100         0


Q ss_pred             CCCcccEEEEcCCCC
Q 027945          114 SVGHVDTVVMNPPFG  128 (216)
Q Consensus       114 ~~~~fD~v~~npp~~  128 (216)
                      ..++.|++|.|....
T Consensus        91 ~~g~id~lv~nAg~~  105 (247)
T 3i1j_A           91 EFGRLDGLLHNASII  105 (247)
T ss_dssp             HHSCCSEEEECCCCC
T ss_pred             hCCCCCEEEECCccC
Confidence            112489999887653

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=88.98  E-value=2.2  Score=33.38  Aligned_cols=75  Identities=17%  Similarity=0.356  Sum_probs=49.4

Q ss_pred             CCCEEEEecCCcchHHH----HHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc-------cCC
Q 027945           48 SNKVVADFGCGCGTLGA----AATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~----~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .++++|-.|++.| ++.    .+++.|. +|++++.++..++.....+...+. ++.++.+|+.+...-.       ...
T Consensus        27 ~~k~vlITGasgg-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           27 QGKKVIVTGASKG-IGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5678998886544 444    4445565 899999998887776665554443 5788999987632110       011


Q ss_pred             CcccEEEEc
Q 027945          116 GHVDTVVMN  124 (216)
Q Consensus       116 ~~fD~v~~n  124 (216)
                      ++.|++|.|
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            248999987

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=88.93  E-value=3  Score=32.26  Aligned_cols=79  Identities=11%  Similarity=0.019  Sum_probs=50.4

Q ss_pred             CCCEEEEecCCcchHHH----HHHHcCCCeEEEEeC-CHHHHHHHHHHHHhc-CCCeEEEEcccccc----cccc-----
Q 027945           48 SNKVVADFGCGCGTLGA----AATLLGADQVIAIDI-DSDSLELASENAADL-ELDIDFVQCDIRNL----EWRV-----  112 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~----~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----~~~~-----  112 (216)
                      .++++|-.|++.| ++.    .+++.|. +|++++. ++...+.+...+... +.++.++.+|+.+.    ..-.     
T Consensus        10 ~~k~~lVTGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           10 ECPAAVITGGARR-IGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             -CCEEEETTCSSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence            5678887776654 444    4444565 8999999 887776665555443 44688899998765    2110     


Q ss_pred             --cCCCcccEEEEcCCCC
Q 027945          113 --CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       113 --~~~~~fD~v~~npp~~  128 (216)
                        ...++.|++|.|.-..
T Consensus        88 ~~~~~g~id~lv~nAg~~  105 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAY  105 (276)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHhcCCCCEEEECCCCC
Confidence              0112489999876543

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=88.86  E-value=2.1  Score=32.95  Aligned_cols=77  Identities=22%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------c-CCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------C-SVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~-~~~  116 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...++..+.++.++.+|+.+...-.       . ..+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            56788888866552   3344445565 8999999988777666655544546788899987632110       0 024


Q ss_pred             cccEEEEcC
Q 027945          117 HVDTVVMNP  125 (216)
Q Consensus       117 ~fD~v~~np  125 (216)
                      +.|++|.|.
T Consensus        83 ~id~lvnnA   91 (260)
T 2qq5_A           83 RLDVLVNNA   91 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            589999887

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=88.69  E-value=2.5  Score=32.50  Aligned_cols=78  Identities=23%  Similarity=0.173  Sum_probs=51.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.++...+.....+   +.++.++.+|+.+...-.       ...+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   81 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEHAG   81 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            467889988876552   3445555565 8999999988776665544   336788999987632111       1123


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus        82 ~id~lv~~Ag~~   93 (259)
T 4e6p_A           82 GLDILVNNAALF   93 (259)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            499999887654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.66  E-value=1.3  Score=36.02  Aligned_cols=45  Identities=29%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|+|. |...+.+++. |..+|+++|.++..++.++.
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            456788999999874 6677777764 55599999999988888764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=88.34  E-value=2.9  Score=32.40  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=55.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++. ++...+.....++..+.++.++.+|+.+...-.       ...
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  105 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD  105 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            467889988877663   3455555566 8999998 666667777777666668899999987632111       011


Q ss_pred             CcccEEEEcCCCCC
Q 027945          116 GHVDTVVMNPPFGT  129 (216)
Q Consensus       116 ~~fD~v~~npp~~~  129 (216)
                      ++.|.+|.|.....
T Consensus       106 g~id~li~nAg~~~  119 (271)
T 4iin_A          106 GGLSYLVNNAGVVR  119 (271)
T ss_dssp             SSCCEEEECCCCCC
T ss_pred             CCCCEEEECCCcCC
Confidence            24999998876543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=88.28  E-value=1.7  Score=33.08  Aligned_cols=78  Identities=19%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             CCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCC-HHHHHHHHHHHHhcCCCeEEEEcccccccccc---c----CC
Q 027945           48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNLEWRV---C----SV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~----~~  115 (216)
                      .++++|-.|++ |.++..++    +.|. +|++++.+ +..++.....+...+.++.++.+|+.+...-.   .    ..
T Consensus         6 ~~k~vlVTGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            6 KGKRVLITGSS-QGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56788877764 55554444    4455 89999988 66666555555544556888999987643111   0    01


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|+||.+...
T Consensus        84 g~id~vi~~Ag~   95 (258)
T 3afn_B           84 GGIDVLINNAGG   95 (258)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            249999987654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=88.28  E-value=3  Score=32.13  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=52.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...+...  +.++.++.+|+.+...-.       ..
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   89 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467789988876552   3444455565 8999999988777665555443  446888999987642111       01


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .++.|++|.|.-.
T Consensus        90 ~g~id~lv~nAg~  102 (267)
T 1iy8_A           90 FGRIDGFFNNAGI  102 (267)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1248999988654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.26  E-value=1.5  Score=36.72  Aligned_cols=68  Identities=15%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             CEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc-ccCCCcccEEEEc
Q 027945           50 KVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR-VCSVGHVDTVVMN  124 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~fD~v~~n  124 (216)
                      ..|+-+|+  |.++..+++    .|. .|+++|.|++.++.++..      .+.++.+|+.+...- ...-.+.|+|++-
T Consensus         5 ~~viIiG~--Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            5 MRVIIAGF--GRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT------TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence            45777776  555555443    354 899999999999887642      367799998774321 1111248998875


Q ss_pred             CC
Q 027945          125 PP  126 (216)
Q Consensus       125 pp  126 (216)
                      .+
T Consensus        76 ~~   77 (413)
T 3l9w_A           76 ID   77 (413)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=88.24  E-value=3  Score=32.51  Aligned_cols=79  Identities=20%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .++++|-.|++ |.++..+++    .|. +|++++.++...+.+...++..+.++.++.+|+.+...-.       ...+
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            45788888865 555555543    354 8999998887777666666555557888999987632111       0113


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|+||.|....
T Consensus       121 ~id~li~~Ag~~  132 (285)
T 2c07_A          121 NVDILVNNAGIT  132 (285)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            489999876553

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=88.14  E-value=2.2  Score=33.10  Aligned_cols=79  Identities=20%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH---hcCCCeEEEEcccccccccc-------cC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAA---DLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++..++.+...+.   ..+.++.++.+|+.+...-.       ..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            56788888876542   3344445565 89999999887776655552   22226788899987632111       01


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .++.|++|.|...
T Consensus        84 ~g~id~lv~~Ag~   96 (278)
T 1spx_A           84 FGKLDILVNNAGA   96 (278)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             cCCCCEEEECCCC
Confidence            1248999987654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=88.08  E-value=3.3  Score=31.78  Aligned_cols=81  Identities=23%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++...+.+...+... +.++.++.+|+.+...-.       ...
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            356788988876552   3444445565 8999999987776655555433 446888999987642111       011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        84 g~id~lv~~Ag~~   96 (263)
T 3ai3_A           84 GGADILVNNAGTG   96 (263)
T ss_dssp             SSCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            2489999887543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=88.05  E-value=2.9  Score=32.66  Aligned_cols=81  Identities=14%  Similarity=0.072  Sum_probs=51.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH-HHHHHHHHHHH-hcCCCeEEEEccccc----ccccc-----
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS-DSLELASENAA-DLELDIDFVQCDIRN----LEWRV-----  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~~a~~~~~-~~~~~~~~~~~d~~~----~~~~~-----  112 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++ ...+.+...+. ..+.++.++.+|+.+    ...-.     
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHH
Confidence            356788888876552   3444555565 899999987 66665555544 334468889999887    22100     


Q ss_pred             --cCCCcccEEEEcCCCC
Q 027945          113 --CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       113 --~~~~~fD~v~~npp~~  128 (216)
                        ...++.|++|.|.-..
T Consensus       100 ~~~~~g~iD~lvnnAG~~  117 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASAF  117 (288)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHhcCCCCEEEECCCCC
Confidence              0112489999886543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=88.03  E-value=3  Score=31.87  Aligned_cols=79  Identities=19%  Similarity=0.148  Sum_probs=50.4

Q ss_pred             CCCEEEEecCCcchHHHHH----HHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .++++|-.|++ |.++..+    ++.|. +|++++. ++...+.....+...+.++.++.+|+.+...-.       ...
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            6 EGKVVVITGSS-TGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56788888765 4444444    44455 8999998 777666665555554446788899987632110       001


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        84 g~id~li~~Ag~~   96 (261)
T 1gee_A           84 GKLDVMINNAGLE   96 (261)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            2389999876543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=88.02  E-value=1.2  Score=36.20  Aligned_cols=46  Identities=28%  Similarity=0.312  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-.|+|. |.+.+.+++. |...|+++|.+++..+.+++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            456788999999864 6667777764 665699999999999999876

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=88.00  E-value=2.9  Score=32.34  Aligned_cols=75  Identities=20%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             CEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCccc
Q 027945           50 KVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVD  119 (216)
Q Consensus        50 ~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD  119 (216)
                      ++||--|+++|.   .+..+++.|. +|+.+|.+++..+...+.    +.++..+++|+.+...-.       ...++.|
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iD   77 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKE----RPNLFYFHGDVADPLTLKKFVEYAMEKLQRID   77 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTT----CTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----cCCEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            678888888774   4566666676 999999998766543322    236788899987732111       1224599


Q ss_pred             EEEEcCCCCC
Q 027945          120 TVVMNPPFGT  129 (216)
Q Consensus       120 ~v~~npp~~~  129 (216)
                      ++|.|--...
T Consensus        78 iLVNNAG~~~   87 (247)
T 3ged_A           78 VLVNNACRGS   87 (247)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCCC
Confidence            9998775433

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=87.96  E-value=3.1  Score=32.30  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++. ++...+.....++..+.++.++.+|+.+...-.       ...
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467889988877653   3455555566 8998888 677777776666666667889999988743211       011


Q ss_pred             CcccEEEEcCCCCC
Q 027945          116 GHVDTVVMNPPFGT  129 (216)
Q Consensus       116 ~~fD~v~~npp~~~  129 (216)
                      ++.|++|.|.-...
T Consensus       105 g~id~lv~nAg~~~  118 (269)
T 4dmm_A          105 GRLDVLVNNAGITR  118 (269)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            34899998876543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=87.96  E-value=3.5  Score=31.91  Aligned_cols=82  Identities=20%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HhcCCCeEEEEcccccccccc-------cC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENA-ADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ...++++|-.|++.|.   +...+++.|. +|++++.++..++.....+ +..+.++.++.+|+.+...-.       ..
T Consensus        18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           18 DLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3467788988876552   3444455565 8999999987776655554 333446888899987632110       01


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .++.|++|.|..+.
T Consensus        97 ~g~iD~lvnnAg~~  110 (267)
T 1vl8_A           97 FGKLDTVVNAAGIN  110 (267)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCcC
Confidence            12489999886654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=87.89  E-value=1.4  Score=34.43  Aligned_cols=80  Identities=14%  Similarity=0.162  Sum_probs=53.5

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..+++++|--|+++|.   .+..+++.|+ +|+.++.+.+..+.+.. +...+.++.++.+|+.+...-.       ...
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~-~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDA-LAQRQPRATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHH-HHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHH-HHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            3578999999998885   4566677676 89999987665544433 3333447888999987632111       122


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|+++.|--.
T Consensus        82 G~iDiLVNnAGi   93 (258)
T 4gkb_A           82 GRLDGLVNNAGV   93 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            459999987654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=87.85  E-value=5.9  Score=30.89  Aligned_cols=82  Identities=17%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHH-------HHHHHHHHHHhcCCCeEEEEcccccccccc----
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSD-------SLELASENAADLELDIDFVQCDIRNLEWRV----  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~-------~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----  112 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++.       .++.+...+...+.++.++.+|+.+...-.    
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            367889999987663   4455555565 8999998865       344444445544557889999987743111    


Q ss_pred             ---cCCCcccEEEEcCCCCC
Q 027945          113 ---CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       113 ---~~~~~fD~v~~npp~~~  129 (216)
                         ...++.|++|.|.-...
T Consensus        86 ~~~~~~g~id~lvnnAg~~~  105 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASAIN  105 (285)
T ss_dssp             HHHHHHSCCSEEEECCCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCC
Confidence               01134999998876543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=87.69  E-value=1.6  Score=35.27  Aligned_cols=45  Identities=33%  Similarity=0.423  Sum_probs=35.6

Q ss_pred             CCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           46 DVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        46 ~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ..++.+||-.|+|. |..++.+++. |..+|+++|.+++.++.+++.
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l  215 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV  215 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            45788999999864 6677777754 567999999999988888653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.64  E-value=5.9  Score=30.52  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=46.2

Q ss_pred             CEEEEecCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcC
Q 027945           50 KVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ++||-.||  |.++..+++.    |. +|++++.++...+....      .+++++.+|+.+..  ...   +|+||..-
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~--~~~---~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA------SGAEPLLWPGEEPS--LDG---VTHLLIST   71 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH------TTEEEEESSSSCCC--CTT---CCEEEECC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh------CCCeEEEecccccc--cCC---CCEEEECC
Confidence            58999994  8888777653    44 89999998765544332      15899999998854  223   99999765


Q ss_pred             CCC
Q 027945          126 PFG  128 (216)
Q Consensus       126 p~~  128 (216)
                      ...
T Consensus        72 ~~~   74 (286)
T 3ius_A           72 APD   74 (286)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=87.62  E-value=2.3  Score=33.31  Aligned_cols=79  Identities=19%  Similarity=0.180  Sum_probs=51.8

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---cCCCccc
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---CSVGHVD  119 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~fD  119 (216)
                      ...++++|-.|++.|.   +...+++.|. +|++++.++...+.+...+   +.++.++.+|+.+...-.   ..-++.|
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~~iD   88 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTM---AGQVEVRELDLQDLSSVRRFADGVSGAD   88 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTS---SSEEEEEECCTTCHHHHHHHHHTCCCEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---cCCeeEEEcCCCCHHHHHHHHHhcCCCC
Confidence            4577889988877553   3444555565 9999999987766554433   336889999987643211   1113489


Q ss_pred             EEEEcCCCC
Q 027945          120 TVVMNPPFG  128 (216)
Q Consensus       120 ~v~~npp~~  128 (216)
                      ++|.|....
T Consensus        89 ~lv~nAg~~   97 (291)
T 3rd5_A           89 VLINNAGIM   97 (291)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCcCC
Confidence            999876543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=87.38  E-value=2.1  Score=38.12  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=58.7

Q ss_pred             CEEEEecCCcchHHHHHHHc-----------C--CCeEEEEeC---CHHHHHHHH-----------HHHHhcC-------
Q 027945           50 KVVADFGCGCGTLGAAATLL-----------G--ADQVIAIDI---DSDSLELAS-----------ENAADLE-------   95 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~-----------~--~~~v~~~D~---~~~~~~~a~-----------~~~~~~~-------   95 (216)
                      -+|||+|-|+|...+...+.           .  .-+++++|.   +++-+..+-           ..++.+.       
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            49999999999865554431           1  126899998   665555322           2222221       


Q ss_pred             --------CCeEEEEccccccccccc--CCCcccEEEEcCCCCCCCCCC-CHHHHHHHHhhcC
Q 027945           96 --------LDIDFVQCDIRNLEWRVC--SVGHVDTVVMNPPFGTRKKGV-DMDFLSMALKVAS  147 (216)
Q Consensus        96 --------~~~~~~~~d~~~~~~~~~--~~~~fD~v~~npp~~~~~~~~-~~~~l~~~~~~~~  147 (216)
                              +.+++..+|+.+......  ....||+++.|+.-...++.+ ...+++.+.+..+
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~  210 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR  210 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEE
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhC
Confidence                    245678899887655431  123599999997422222222 4467777777765

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=87.18  E-value=4.2  Score=33.03  Aligned_cols=82  Identities=17%  Similarity=0.131  Sum_probs=53.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHH-------HHHHHHHHHhcCCCeEEEEcccccccccc----
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDS-------LELASENAADLELDIDFVQCDIRNLEWRV----  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~-------~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----  112 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..       ++.+...++..+.++.++.+|+.+...-.    
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence            467889998887663   4455555565 89999987652       44444455555557888999987743111    


Q ss_pred             ---cCCCcccEEEEcCCCCC
Q 027945          113 ---CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       113 ---~~~~~fD~v~~npp~~~  129 (216)
                         ...++.|++|.|.....
T Consensus       122 ~~~~~~g~iDilVnnAG~~~  141 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASAIS  141 (346)
T ss_dssp             HHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCC
Confidence               01134999998876543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.17  E-value=1.1  Score=36.28  Aligned_cols=46  Identities=17%  Similarity=0.134  Sum_probs=35.5

Q ss_pred             hcCCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           43 SFGDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      .....++.+||-.|+|. |...+.+++. |. +|+++|.+++..+.+++
T Consensus       171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS  218 (348)
T ss_dssp             HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh
Confidence            33556788999999864 6667777764 55 99999999988887765

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.14  E-value=1.5  Score=35.89  Aligned_cols=44  Identities=27%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|+|. |...+.+++. |. +|+++|.+++.++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            456788999999874 6667777764 55 79999999988888875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.09  E-value=5.2  Score=26.97  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=41.3

Q ss_pred             CCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEE
Q 027945           49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVM  123 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~  123 (216)
                      +.+|+=+|+  |.++..++    +.| .+|+++|.++..++.+....     .+.++.+|..+...-. ..-..+|+|+.
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhc-----CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            457888876  55554444    335 48999999988776554331     2456777765422110 01123899998


Q ss_pred             cCC
Q 027945          124 NPP  126 (216)
Q Consensus       124 npp  126 (216)
                      -.|
T Consensus        76 ~~~   78 (140)
T 1lss_A           76 VTG   78 (140)
T ss_dssp             CCS
T ss_pred             eeC
Confidence            655

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=87.03  E-value=2.9  Score=32.16  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=54.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEE-eCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+ +.++...+.+...++..+.++.++.+|+.+...-.       ...
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            467899999987663   4555556666 78877 67777777776666666667889999987643111       011


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|.++.|.-.
T Consensus        85 g~id~lv~nAg~   96 (259)
T 3edm_A           85 GEIHGLVHVAGG   96 (259)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            348999987643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=86.93  E-value=1.7  Score=35.63  Aligned_cols=46  Identities=33%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-.|+|. |.+++.+++. |..+|+++|.++...+.++..
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            456788999999864 5667777754 666999999999988888764

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=86.91  E-value=2.3  Score=32.92  Aligned_cols=92  Identities=20%  Similarity=0.274  Sum_probs=58.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---cCCCcccE
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---CSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~fD~  120 (216)
                      ..++++|--|+++|.   ....+++.|. +|+.+|.+++.++.+      .+.++..+.+|+.+...-.   ...++.|+
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   81 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAP------RHPRIRREELDITDSQRLQRLFEALPRLDV   81 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSC------CCTTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhh------hcCCeEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            478999999998884   5666667676 999999987654321      1226788888987632111   12345999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945          121 VVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus       121 v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                      ++.|--..........+.+++.++.
T Consensus        82 LVNNAGi~~~~~~~~~~~w~~~~~v  106 (242)
T 4b79_A           82 LVNNAGISRDREEYDLATFERVLRL  106 (242)
T ss_dssp             EEECCCCCCGGGGGSHHHHHHHHHH
T ss_pred             EEECCCCCCCcccCCHHHHHHHHHH
Confidence            9988655433333344445544443

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=86.89  E-value=3.2  Score=31.34  Aligned_cols=79  Identities=23%  Similarity=0.267  Sum_probs=47.8

Q ss_pred             CCCEEEEecCCcchHHHH----HHHcCCCeEEEE-eCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .++++|-.|++ |.++..    +++.|. +|+++ +.++...+.....++..+.++.++.+|+.+...-.       ...
T Consensus         4 ~~~~vlItGas-ggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T 2hq1_A            4 KGKTAIVTGSS-RGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF   81 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46788888865 444444    444565 89988 56666666555555555557888999987642111       001


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        82 ~~~d~vi~~Ag~~   94 (247)
T 2hq1_A           82 GRIDILVNNAGIT   94 (247)
T ss_dssp             SCCCEEEECC---
T ss_pred             CCCCEEEECCCCC
Confidence            2389999876543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=86.65  E-value=3.9  Score=32.11  Aligned_cols=80  Identities=15%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHH-HHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSD-SLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++. ..+.+...++..+.++.++.+|+.+...-.       ...
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999977663   3455555565 8999998765 445555555555667899999987632111       011


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|++|.|...
T Consensus       124 g~iD~lvnnAg~  135 (291)
T 3ijr_A          124 GSLNILVNNVAQ  135 (291)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            348999988554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=86.64  E-value=1.5  Score=35.85  Aligned_cols=45  Identities=24%  Similarity=0.313  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|+|. |...+.+++. |..+|+++|.+++.++.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            446788999999863 5666677754 66689999999988888764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=86.60  E-value=3.4  Score=31.77  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEE-eCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.+ +.++...+.....++..+.++.++.+|+.+...-.       ...+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45788888876552   3444555566 77776 78888887777777666668899999987743111       0113


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|++|.|.-.
T Consensus        82 ~id~lv~nAg~   92 (258)
T 3oid_A           82 RLDVFVNNAAS   92 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            48999988754

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=86.44  E-value=4  Score=31.12  Aligned_cols=82  Identities=18%  Similarity=0.138  Sum_probs=49.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEe-CCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAID-IDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D-~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .+++++|-.|++.|.   +...+++.|. +|+.++ .+....+.....+...+.++.++.+|+.+...-.       ...
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV   89 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence            466788888876552   3445555565 788877 5544444444444555557888999987642111       111


Q ss_pred             CcccEEEEcCCCCC
Q 027945          116 GHVDTVVMNPPFGT  129 (216)
Q Consensus       116 ~~fD~v~~npp~~~  129 (216)
                      ++.|++|.|.....
T Consensus        90 g~id~lv~~Ag~~~  103 (256)
T 3ezl_A           90 GEIDVLVNNAGITR  103 (256)
T ss_dssp             CCEEEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            34899998876543

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=86.35  E-value=4.5  Score=31.46  Aligned_cols=77  Identities=9%  Similarity=0.047  Sum_probs=50.9

Q ss_pred             CEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCccc
Q 027945           50 KVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVD  119 (216)
Q Consensus        50 ~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD  119 (216)
                      +++|-.|++.|.   +...+++.|. +|++++.++..++.....+... .++.++.+|+.+...-.       ...++.|
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   99 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEFATLR   99 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGGSSCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            688888876662   4555566665 8999999988777665555432 35788899987632110       1113489


Q ss_pred             EEEEcCCCC
Q 027945          120 TVVMNPPFG  128 (216)
Q Consensus       120 ~v~~npp~~  128 (216)
                      ++|.|....
T Consensus       100 ~lvnnAG~~  108 (272)
T 2nwq_A          100 GLINNAGLA  108 (272)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999887553

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.27  E-value=3.9  Score=31.27  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--C-CCeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--E-LDIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~-~~~~~~~~d~~~~~~~~-------~  113 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...+...  + .++.++.+|+.+...-.       .
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            356789988887663   4455556676 9999999998887776666543  2 36788999987732111       0


Q ss_pred             CCCcccEEEEcCCCC
Q 027945          114 SVGHVDTVVMNPPFG  128 (216)
Q Consensus       114 ~~~~fD~v~~npp~~  128 (216)
                      ..++.|++|.|....
T Consensus        84 ~~g~iD~lvnnAg~~   98 (250)
T 3nyw_A           84 KYGAVDILVNAAAMF   98 (250)
T ss_dssp             HHCCEEEEEECCCCC
T ss_pred             hcCCCCEEEECCCcC
Confidence            113489999887654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=85.90  E-value=4.6  Score=30.97  Aligned_cols=79  Identities=16%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....+   +.++.++.+|+.+...-.       ...+
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            467899999977663   4455555566 9999999988777665554   236888999987643211       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|+++.|.....
T Consensus        82 ~id~lv~nAg~~~   94 (255)
T 4eso_A           82 AIDLLHINAGVSE   94 (255)
T ss_dssp             SEEEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            4899998866543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=85.77  E-value=1.2  Score=36.60  Aligned_cols=45  Identities=38%  Similarity=0.440  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|+| .|.+++.+++. |..+|+++|.++..++.+++
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            44678899999986 36667777754 66689999999988887764

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=85.73  E-value=9.8  Score=28.78  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++. ++...+.....++..+.++.++.+|+.+...-.       ...+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35678877766552   3444555565 8888887 556666666666666667888999987642211       0112


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|+++.|....
T Consensus        82 ~id~lv~nAg~~   93 (246)
T 3osu_A           82 SLDVLVNNAGIT   93 (246)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            489999887654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=85.47  E-value=2.5  Score=34.17  Aligned_cols=44  Identities=27%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-.|+|. |...+.+++. |. +|+++|.+++.++.++.
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            456788999999863 5666777754 55 69999999988888764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=85.33  E-value=2  Score=35.00  Aligned_cols=46  Identities=30%  Similarity=0.384  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|+|. |.+.+.+++. |..+|+++|.+++.++.++..
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l  234 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            446788999999763 5566666654 665899999999988888653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=85.32  E-value=3.9  Score=31.73  Aligned_cols=74  Identities=12%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc------cCCCc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV------CSVGH  117 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~  117 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+   +.++.++.+|+.+...-.      ...+.
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~  103 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL---GNRAEFVSTNVTSEDSVLAAIEAANQLGR  103 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            367788988877663   3455555566 8999999988777665554   336889999987633111      12235


Q ss_pred             ccEEEEc
Q 027945          118 VDTVVMN  124 (216)
Q Consensus       118 fD~v~~n  124 (216)
                      .|.++.|
T Consensus       104 id~lv~~  110 (281)
T 3ppi_A          104 LRYAVVA  110 (281)
T ss_dssp             EEEEEEC
T ss_pred             CCeEEEc
Confidence            8999987

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=85.26  E-value=1.9  Score=35.22  Aligned_cols=45  Identities=31%  Similarity=0.519  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|+|. |.+.+.+++. |..+|+++|.+++.++.++.
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            445788999999763 5666777754 55589999999988888764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=85.18  E-value=5.1  Score=31.32  Aligned_cols=79  Identities=27%  Similarity=0.344  Sum_probs=51.1

Q ss_pred             CCCCEEEEecCCcchHHH----HHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-CCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGTLGA----AATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~----~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++. .++.    .+++.|. +|++++.++...+.....+... +.++.++.+|+.+...-.       ..
T Consensus        24 l~~k~vlITGasg-giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           24 FQGKVAFITGGGT-GLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTTCEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            3567888888654 4444    4444565 8999999987776665555433 447889999987632110       11


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .+++|++|.+...
T Consensus       102 ~g~id~li~~Ag~  114 (302)
T 1w6u_A          102 AGHPNIVINNAAG  114 (302)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1348999987654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=85.03  E-value=3.4  Score=29.82  Aligned_cols=47  Identities=15%  Similarity=0.105  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCC
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDID   80 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~   80 (216)
                      +...|+++.......++ -|||+|-|+|..--.+... +..+++.+|-.
T Consensus        26 QR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~   73 (174)
T 3iht_A           26 QRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERA   73 (174)
T ss_dssp             HHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESS
T ss_pred             HHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEee
Confidence            45567777766555555 5999999999998888865 56699999953

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=84.91  E-value=4  Score=31.76  Aligned_cols=82  Identities=21%  Similarity=0.259  Sum_probs=51.9

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc------cCCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV------CSVG  116 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~  116 (216)
                      ...++++|-.|++.|.   +...+++.|. +|+.++.++ ..+.....+...+.++.++.+|+.+...-.      ...+
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            3577899999987663   4555556566 899999654 344444444444557888999987643211      0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|.-...
T Consensus       106 ~iD~lv~nAg~~~  118 (273)
T 3uf0_A          106 RVDVLVNNAGIIA  118 (273)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCcEEEECCCCCC
Confidence            4999998866543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=84.87  E-value=2.1  Score=34.07  Aligned_cols=60  Identities=18%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             CCCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH------------------HHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           47 VSNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS------------------DSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        47 ~~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~------------------~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      ....+||-+||| .|. ....|++.|..+++.+|.|.                  .-.+.+++++...+.  +++.+..+
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~  113 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN  113 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence            467799999998 555 45667777988999999775                  345556666655433  56666655


Q ss_pred             cc
Q 027945          105 IR  106 (216)
Q Consensus       105 ~~  106 (216)
                      +.
T Consensus       114 l~  115 (292)
T 3h8v_A          114 IT  115 (292)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=84.82  E-value=6.2  Score=30.42  Aligned_cols=81  Identities=26%  Similarity=0.292  Sum_probs=53.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++. +....+.....++..+.++.++.+|+.+...-.       ...
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            467889998877663   4455555566 8888776 456666666666666667889999987743211       011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        95 g~id~lvnnAg~~  107 (270)
T 3is3_A           95 GHLDIAVSNSGVV  107 (270)
T ss_dssp             SCCCEEECCCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3489999876654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=84.79  E-value=6.6  Score=30.69  Aligned_cols=79  Identities=23%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHh-----cCCCeEEEEcccccccccc-----
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-----LELDIDFVQCDIRNLEWRV-----  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~~~~-----  112 (216)
                      ..++++|-.|++ |.++..++    +.|. +|++++.++...+.+...+..     .+.++.++.+|+.+...-.     
T Consensus        16 l~~k~vlVTGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           16 LQGQVAIVTGGA-TGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            356789988865 55554444    4465 899999998877766665544     2447889999987632111     


Q ss_pred             --cCCCcccEEEEcCCC
Q 027945          113 --CSVGHVDTVVMNPPF  127 (216)
Q Consensus       113 --~~~~~fD~v~~npp~  127 (216)
                        ...++.|+||.|...
T Consensus        94 ~~~~~g~id~li~~Ag~  110 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGG  110 (303)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence              011248999987654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=84.77  E-value=2.8  Score=32.81  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.+...+...+. .+.++.+|+.+...-.       ...
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF  109 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            367888988876552   3444555565 899999999887776666544333 3588999987643111       011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|.-..
T Consensus       110 g~iD~lvnnAG~~  122 (281)
T 4dry_A          110 ARLDLLVNNAGSN  122 (281)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3489999887653

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=84.72  E-value=1.5  Score=34.74  Aligned_cols=42  Identities=17%  Similarity=0.165  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhcCCCeEEE--EcccccccccccCCCcccEEEEcCCCCC
Q 027945           81 SDSLELASENAADLELDIDFV--QCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        81 ~~~~~~a~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      ++.+..+...++.    +++.  +.|+.+.......   =|+|++||||..
T Consensus       156 ~~~l~~~~~~l~~----v~i~~~~~Df~~~i~~~~~---~~fvY~DPPY~~  199 (284)
T 2dpm_A          156 EELISAISVYINN----NQLEIKVGDFEKAIVDVRT---GDFVYFDPPYIP  199 (284)
T ss_dssp             HHHHHHHHHHHHH----SEEEEEESCGGGGGTTCCT---TCEEEECCCCCC
T ss_pred             HHHHHHHHHHhCC----CEEEEeCCCHHHHHHhcCC---CCEEEeCCCccc
Confidence            4566666666653    6777  9999987654323   689999999965

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=84.45  E-value=3.1  Score=33.23  Aligned_cols=82  Identities=20%  Similarity=0.209  Sum_probs=54.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC----------HHHHHHHHHHHHhcCCCeEEEEcccccccccc-
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID----------SDSLELASENAADLELDIDFVQCDIRNLEWRV-  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~----------~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-  112 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.+          ....+.....+...+.++.++.+|+.+...-. 
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            467889988877652   3455555565 99999987          56666666666665657888899987632211 


Q ss_pred             ------cCCCcccEEEEcCCCCC
Q 027945          113 ------CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       113 ------~~~~~fD~v~~npp~~~  129 (216)
                            ...++.|++|.|.-...
T Consensus       104 ~~~~~~~~~g~iD~lv~nAg~~~  126 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNAGIVR  126 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCCCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCC
Confidence                  01134899998776543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=84.38  E-value=5.7  Score=26.88  Aligned_cols=70  Identities=19%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             CCCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccccc-CCCcccEEE
Q 027945           48 SNKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVC-SVGHVDTVV  122 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~fD~v~  122 (216)
                      ..++|+-+|+  |.++..+++    .|. +|+++|.++...+.++.    .  ...++.+|..+...-.. ....+|+|+
T Consensus         5 ~~~~v~I~G~--G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~----~--~~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            5 KNKQFAVIGL--GRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----Y--ATHAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             -CCSEEEECC--SHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTT----T--CSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             cCCcEEEECC--CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----h--CCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            3457888887  555555443    354 89999999866544322    1  24566777654211000 012389999


Q ss_pred             EcCC
Q 027945          123 MNPP  126 (216)
Q Consensus       123 ~npp  126 (216)
                      ...+
T Consensus        76 ~~~~   79 (144)
T 2hmt_A           76 VAIG   79 (144)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8665

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=84.32  E-value=6  Score=30.26  Aligned_cols=80  Identities=24%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc---c----C
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV---C----S  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~----~  114 (216)
                      ..++++|-.|++ |.++..++    +.|. +|++++. ++...+.....++..+.++.++.+|+.+...-.   .    .
T Consensus        19 ~~~k~vlItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           19 LAGKVALTTGAG-RGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            356788877764 55555444    4455 8999998 777776666666555557888999987632111   0    0


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .++.|.++.+....
T Consensus        97 ~~~~d~vi~~Ag~~  110 (274)
T 1ja9_A           97 FGGLDFVMSNSGME  110 (274)
T ss_dssp             HSCEEEEECCCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            12389999876543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=84.27  E-value=5.8  Score=30.40  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             CCCCEEEEecCC--cch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCG--CGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G--~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-------~  113 (216)
                      ..++++|-.|++  +|.   +...+++.|. +|+.++.+....+.+....+..+. ++.++.+|+.+...-.       .
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            467899999976  342   4566666666 899999987766666666665554 6889999988743211       0


Q ss_pred             CCCcccEEEEcCCCC
Q 027945          114 SVGHVDTVVMNPPFG  128 (216)
Q Consensus       114 ~~~~fD~v~~npp~~  128 (216)
                      ..++.|.++.|..+.
T Consensus        84 ~~g~id~li~~Ag~~   98 (266)
T 3oig_A           84 QVGVIHGIAHCIAFA   98 (266)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCeeEEEEccccc
Confidence            113489999887654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=84.23  E-value=6.7  Score=30.00  Aligned_cols=79  Identities=22%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------cCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++...+.....+...  +.++.++.+|+.+...-.       ...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            56788888876552   3344445565 8999999987776665555432  226788899987632111       111


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      + .|++|.|....
T Consensus        85 g-id~lv~~Ag~~   96 (260)
T 2z1n_A           85 G-ADILVYSTGGP   96 (260)
T ss_dssp             C-CSEEEECCCCC
T ss_pred             C-CCEEEECCCCC
Confidence            3 89999887643

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=84.18  E-value=9.8  Score=28.37  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=47.3

Q ss_pred             EEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc----cCCCcccEEEE
Q 027945           51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV----CSVGHVDTVVM  123 (216)
Q Consensus        51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~fD~v~~  123 (216)
                      ++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+   +.++.++.+|+.+...-.    .....+|+++.
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~   78 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVH   78 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred             EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence            57777766552   3444555565 8999999988776655443   336788888987643111    11123699998


Q ss_pred             cCCCCC
Q 027945          124 NPPFGT  129 (216)
Q Consensus       124 npp~~~  129 (216)
                      |.....
T Consensus        79 ~Ag~~~   84 (230)
T 3guy_A           79 SAGSGY   84 (230)
T ss_dssp             CCCCCC
T ss_pred             eCCcCC
Confidence            776543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=84.16  E-value=13  Score=28.83  Aligned_cols=79  Identities=24%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.+|.++...+.....+   +.++.++.+|+.+...-.       ...+
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTTAKWG  100 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467889999977663   4455555566 9999999987766554443   336888999987642111       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|++|.|.-...
T Consensus       101 ~iD~lv~nAg~~~  113 (277)
T 4dqx_A          101 RVDVLVNNAGFGT  113 (277)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CCCEEEECCCcCC
Confidence            4899998876543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=84.12  E-value=2.2  Score=35.35  Aligned_cols=45  Identities=27%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             CCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           46 DVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        46 ~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ..++.+||-+|+|. |..++.+++. |..+|+++|.++..++.+++.
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            45788999999863 5566666654 666999999999998888754

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=84.10  E-value=4.6  Score=31.36  Aligned_cols=77  Identities=22%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++.++..++.+...+.   .++.++.+|+.+...-.       ...++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIG---DDALCVPTDVTDPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT---SCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            56788888876552   3455555566 89999999887766655543   36788999987632111       01134


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|++|.|.-..
T Consensus       103 iD~lVnnAg~~  113 (272)
T 4dyv_A          103 VDVLFNNAGTG  113 (272)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999887653

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=83.90  E-value=4.1  Score=31.15  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      .++++|-.|++.|.   +...+++.|. +|++++.++.  +.....+...+.++.++.+|+.+...-.       ...++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            46788888866442   3344445565 8999998765  3333334433446788889987632111       01124


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|++|.|....
T Consensus        80 id~lv~~Ag~~   90 (255)
T 2q2v_A           80 VDILVNNAGIQ   90 (255)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999876543

>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*

Probab=83.70  E-value=1.2  Score=35.23  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           79 IDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        79 ~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      .+...+..+...++.    +++.+.|+.+.......   =|+|++||||
T Consensus       143 ~~~~~l~~~~~~l~~----v~i~~~Df~~~i~~~~~---~~fvY~DPPY  184 (278)
T 2g1p_A          143 FPEAELYHFAEKAQN----AFFYCESYADSMARADD---SSVVYCDPPY  184 (278)
T ss_dssp             CCHHHHHHHHHHGGG----EEEEECCHHHHHTTCCT---TEEEEECCSC
T ss_pred             CCHHHHHHHHHHcCC----cEEEeCCHHHHHHhcCC---CCEEEeCCcc

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=83.61  E-value=5.1  Score=30.13  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             CEEEEecCCcchHHHHHH----HcCCCeEEE-EeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           50 KVVADFGCGCGTLGAAAT----LLGADQVIA-IDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~----~~~~~~v~~-~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      +++|-.|++ |.++..++    +.|. +|++ ++.++...+.....++..+.++.++.+|+.+...-.       ...++
T Consensus         2 k~vlVTGas-ggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            2 PVVVVTGAS-RGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            467766654 55555444    4465 8888 478877776665555544446788899987632111       01124


Q ss_pred             ccEEEEcCCCC
Q 027945          118 VDTVVMNPPFG  128 (216)
Q Consensus       118 fD~v~~npp~~  128 (216)
                      .|++|.+....
T Consensus        80 id~li~~Ag~~   90 (244)
T 1edo_A           80 IDVVVNNAGIT   90 (244)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999876543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=83.40  E-value=2.6  Score=34.36  Aligned_cols=45  Identities=22%  Similarity=0.185  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|+|. |..++.+++. |. +|+++|.++..++.++..
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc
Confidence            446788999999764 6666777764 55 999999999888887653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=83.39  E-value=6.7  Score=29.47  Aligned_cols=80  Identities=20%  Similarity=0.191  Sum_probs=50.7

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++ |.++..++    +.|. +|++++.++...+.....+.. .+.++.++.+|+.+...-.       ..
T Consensus         5 ~~~~~vlVtGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            5 LQGKVSLVTGST-RGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             CTTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            356788887765 55544444    4455 899999998777666555443 3446888899987632110       01


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .++.|.||.+....
T Consensus        83 ~~~~d~vi~~Ag~~   96 (248)
T 2pnf_A           83 VDGIDILVNNAGIT   96 (248)
T ss_dssp             SSCCSEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            12489999876543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=83.36  E-value=6.8  Score=30.38  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH-hcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAA-DLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.+....+.+...+. ..+.++.++.+|+.+...-.       ...
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            467889999977653   3444555566 99999999877666555443 23457889999987642111       011


Q ss_pred             CcccEEEEcCCC
Q 027945          116 GHVDTVVMNPPF  127 (216)
Q Consensus       116 ~~fD~v~~npp~  127 (216)
                      ++.|++|.|.-.
T Consensus       104 g~id~lv~nAg~  115 (277)
T 4fc7_A          104 GRIDILINCAAG  115 (277)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcC
Confidence            349999988754

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=83.29  E-value=4.8  Score=30.97  Aligned_cols=82  Identities=15%  Similarity=0.058  Sum_probs=51.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEE-EeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIA-IDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~-~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+. ...++...+.....+...+.++.++.+|+.+...-.       ...
T Consensus        24 l~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           24 AMSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            356788888876553   3444555566 6755 556777777666666666667899999987743111       011


Q ss_pred             CcccEEEEcCCCCC
Q 027945          116 GHVDTVVMNPPFGT  129 (216)
Q Consensus       116 ~~fD~v~~npp~~~  129 (216)
                      ++.|.+|.|.....
T Consensus       103 g~id~li~nAg~~~  116 (267)
T 4iiu_A          103 GAWYGVVSNAGIAR  116 (267)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCccEEEECCCCCC
Confidence            34999998876543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=83.00  E-value=7.5  Score=28.90  Aligned_cols=68  Identities=21%  Similarity=0.125  Sum_probs=42.7

Q ss_pred             EEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcC
Q 027945           51 VVADFGCGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNP  125 (216)
Q Consensus        51 ~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~np  125 (216)
                      +|+=+|+  |.++..+++    .|. +|+.+|.+++.++......     ...++.+|..+...-. ..-...|+|++-.
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~-----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc-----CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence            3555554  666666554    344 8999999998887654432     3678999987632111 0112389999754


Q ss_pred             C
Q 027945          126 P  126 (216)
Q Consensus       126 p  126 (216)
                      +
T Consensus        74 ~   74 (218)
T 3l4b_C           74 P   74 (218)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*

Probab=82.99  E-value=1.7  Score=33.97  Aligned_cols=40  Identities=18%  Similarity=0.351  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           82 DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        82 ~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +.+..+...++    ++++.+.|+.+..  ...   =|+|++||||...
T Consensus       138 ~~l~~~~~~l~----~v~i~~~Df~~~i--~~~---~~fvY~DPPY~~~  177 (259)
T 1yf3_A          138 KRFNHFKQNCD----KIIFSSLHFKDVK--ILD---GDFVYVDPPYLIT  177 (259)
T ss_dssp             HHHHHHHHHGG----GEEEECCCGGGCC--CCT---TEEEEECCCCTTS
T ss_pred             HHHHHHHHHhc----CCEEEcCCHHHHh--CCC---CeEEEECCCCCCc
Confidence            34445555554    5899999999987  323   6899999999764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=82.97  E-value=6.7  Score=30.30  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=51.2

Q ss_pred             CCCEEEEecCCcchHHHH----HHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc-------cC
Q 027945           48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~----l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-------~~  114 (216)
                      .++++|-.|++ |.++..    +++.|. +|++++.++..++.....++..+.  ++.++.+|+.+...-.       ..
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            56788888865 444444    444565 899999998877776666655443  5778889987643110       00


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .+++|+||.+....
T Consensus       109 ~g~iD~vi~~Ag~~  122 (279)
T 1xg5_A          109 HSGVDICINNAGLA  122 (279)
T ss_dssp             HCCCSEEEECCCCC
T ss_pred             CCCCCEEEECCCCC
Confidence            12389999876543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=82.95  E-value=4.7  Score=31.70  Aligned_cols=81  Identities=11%  Similarity=0.098  Sum_probs=52.4

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC--HHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID--SDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.+  ....+.....++..+.++.++.+|+.+...-.       ..
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            357889999976553   3445555565 89999986  34455555556665667888999987632110       01


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .++.|+++.|.-..
T Consensus       126 ~g~iD~lv~nAg~~  139 (294)
T 3r3s_A          126 LGGLDILALVAGKQ  139 (294)
T ss_dssp             HTCCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCc
Confidence            13489999887653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=82.92  E-value=6.7  Score=29.82  Aligned_cols=79  Identities=22%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++...+.....+..   +..++.+|+.+...-.       ...+
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGD---NGKGMALNVTNPESIEAVLKAITDEFG   82 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG---GEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcc---cceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            467889988877653   4455555566 899999998877766665543   4678888887643111       0113


Q ss_pred             cccEEEEcCCCCC
Q 027945          117 HVDTVVMNPPFGT  129 (216)
Q Consensus       117 ~fD~v~~npp~~~  129 (216)
                      +.|+++.|.-...
T Consensus        83 ~iD~lv~nAg~~~   95 (248)
T 3op4_A           83 GVDILVNNAGITR   95 (248)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCCEEEECCCCCC
Confidence            4999998876543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=82.91  E-value=5.8  Score=30.20  Aligned_cols=77  Identities=21%  Similarity=0.209  Sum_probs=48.4

Q ss_pred             CCCCEEEEecCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---c----CC
Q 027945           47 VSNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---C----SV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l----~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~----~~  115 (216)
                      ..++++|-.|++. .++..+    ++.|. +|++++.++...+.....+   +.++.++.+|+.+...-.   .    ..
T Consensus        10 ~~~k~vlVTGasg-giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (265)
T 2o23_A           10 VKGLVAVITGGAS-GLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALAKGKF   84 (265)
T ss_dssp             CTTCEEEEETTTS-HHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            4667899888764 444444    44465 8999999876555444433   336888999987632111   0    11


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        85 g~id~li~~Ag~~   97 (265)
T 2o23_A           85 GRVDVAVNCAGIA   97 (265)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCccC
Confidence            2499999876543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=82.84  E-value=4.8  Score=33.09  Aligned_cols=89  Identities=17%  Similarity=-0.031  Sum_probs=55.5

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .+.+||.++.+.|.++..++..+   ++.+.=|--+...++.|++.|++. -.+...+..+....  .   +|+|+.-.|
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~--~---~~~v~~~lp  109 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQ--Q---PGVVLIKVP  109 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTSCCCS--S---CSEEEEECC
T ss_pred             CCCCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEeccccccccc--C---CCEEEEEcC
Confidence            44679999999999999988653   344433666777889999999872 11223333332222  3   999998777


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      =   ........+..+.....
T Consensus       110 k---~~~~l~~~L~~l~~~l~  127 (375)
T 4dcm_A          110 K---TLALLEQQLRALRKVVT  127 (375)
T ss_dssp             S---CHHHHHHHHHHHHTTCC
T ss_pred             C---CHHHHHHHHHHHHhhCC
Confidence            1   11122344555555443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=82.82  E-value=6.7  Score=29.59  Aligned_cols=76  Identities=17%  Similarity=0.046  Sum_probs=50.9

Q ss_pred             CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945           49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV  118 (216)
Q Consensus        49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f  118 (216)
                      ++++|-.|++.|.   +...+++.|. +|+.++.++..++.....+..   ++.++.+|+.+...-.       ...++.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   78 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGN---AVIGIVADLAHHEDVDVAFAAAVEWGGLP   78 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG---GEEEEECCTTSHHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678888877653   3455555566 899999998887776665532   5888999987632111       011348


Q ss_pred             cEEEEcCCCC
Q 027945          119 DTVVMNPPFG  128 (216)
Q Consensus       119 D~v~~npp~~  128 (216)
                      |++|.|....
T Consensus        79 d~lvnnAg~~   88 (235)
T 3l6e_A           79 ELVLHCAGTG   88 (235)
T ss_dssp             SEEEEECCCC
T ss_pred             cEEEECCCCC
Confidence            9999876653

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=82.81  E-value=8.6  Score=29.24  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=46.9

Q ss_pred             EEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcccE
Q 027945           51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVDT  120 (216)
Q Consensus        51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD~  120 (216)
                      ++|-.|++.|.   +...+++.|. +|+.++.++..++.....+.   .++.++.+|+.+...-.       ...++.|+
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELG---DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            56666765552   4455555565 89999999877766554442   25788899987632111       11245999


Q ss_pred             EEEcCCCC
Q 027945          121 VVMNPPFG  128 (216)
Q Consensus       121 v~~npp~~  128 (216)
                      +|.|.-..
T Consensus        78 lvnnAg~~   85 (248)
T 3asu_A           78 LVNNAGLA   85 (248)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcC
Confidence            99877543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=82.72  E-value=4.7  Score=30.84  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=51.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHH---cCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc------
Q 027945           47 VSNKVVADFGCGCGT---LGAAATL---LGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV------  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~---~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~------  112 (216)
                      ..++++|-.|++.|.   +...+++   .|. +|++++.++..++.+...+...  +.++.++.+|+.+...-.      
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            356788888876653   3444554   455 9999999988777766655443  336788899987632110      


Q ss_pred             -c--CCCccc--EEEEcCCC
Q 027945          113 -C--SVGHVD--TVVMNPPF  127 (216)
Q Consensus       113 -~--~~~~fD--~v~~npp~  127 (216)
                       .  ..+++|  ++|.|...
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCC
T ss_pred             HhccccccCCccEEEECCcc
Confidence             1  113478  88887654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=82.63  E-value=4.5  Score=30.98  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=49.8

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHH-HHHHHHHHHhc-CCCeEEEEcccccccccc-------cCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDS-LELASENAADL-ELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~-~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .++++|-.|++.|.   +...+++.|. +|+.++.++.. ++.+...+... +.++.++.+|+.+...-.       ...
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46788888876552   3344445565 89999998766 65555444432 446788889987632110       011


Q ss_pred             CcccEEEEcCCCC
Q 027945          116 GHVDTVVMNPPFG  128 (216)
Q Consensus       116 ~~fD~v~~npp~~  128 (216)
                      ++.|++|.|....
T Consensus        82 g~iD~lv~~Ag~~   94 (260)
T 1x1t_A           82 GRIDILVNNAGIQ   94 (260)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            2489999886543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=82.55  E-value=3  Score=34.05  Aligned_cols=45  Identities=29%  Similarity=0.418  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|+|. |...+.+++. |..+|+++|.++..++.++.
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            446788999999763 5666777754 55589999999988888764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.51  E-value=2.4  Score=36.00  Aligned_cols=67  Identities=16%  Similarity=0.254  Sum_probs=45.4

Q ss_pred             CEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-cccCCCcccEEEE
Q 027945           50 KVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RVCSVGHVDTVVM  123 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~fD~v~~  123 (216)
                      ++|+=+|  .|.++..+++.   ....|+.+|.|++.++.+...+     .+..++||+.+... ....-...|++++
T Consensus         4 M~iiI~G--~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            4 MKIIILG--AGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             EEEEEEC--CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEEC--CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            4555554  56677777653   2348999999999998877665     47889999887432 1112234899987

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=82.46  E-value=2.9  Score=33.65  Aligned_cols=43  Identities=16%  Similarity=0.073  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCc-chHHHHHHHcC--CCeEEEEeCCHHHHHHHHHH
Q 027945           48 SNKVVADFGCGC-GTLGAAATLLG--ADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        48 ~~~~vLD~g~G~-G~~~~~l~~~~--~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ++.+||-+|+|. |...+.+++.-  ..+|+++|.+++.++.++..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l  215 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL  215 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh
Confidence            788999999863 56666777532  34899999999988888653

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=82.45  E-value=8.1  Score=28.86  Aligned_cols=72  Identities=17%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             CCCCEEEEecCCcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe-EEEEcccccccccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDI-DFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ..+++||-.|+ +|.++..++    +.|. +|++++.++...+.....      ++ +++.+|+.+.....  -+..|.|
T Consensus        19 l~~~~ilVtGa-tG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~--~~~~D~v   88 (236)
T 3e8x_A           19 FQGMRVLVVGA-NGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRER------GASDIVVANLEEDFSHA--FASIDAV   88 (236)
T ss_dssp             --CCEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHT------TCSEEEECCTTSCCGGG--GTTCSEE
T ss_pred             cCCCeEEEECC-CChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhC------CCceEEEcccHHHHHHH--HcCCCEE
Confidence            46788998885 455555444    3455 999999988765543321      47 88999987221111  1249999


Q ss_pred             EEcCCCC
Q 027945          122 VMNPPFG  128 (216)
Q Consensus       122 ~~npp~~  128 (216)
                      |.+....
T Consensus        89 i~~ag~~   95 (236)
T 3e8x_A           89 VFAAGSG   95 (236)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9876654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=82.45  E-value=2.9  Score=33.75  Aligned_cols=44  Identities=27%  Similarity=0.277  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEecC--CcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGC--GCGTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~--G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++++||-.|+  |.|.....+++. |. +|+++|.++...+.++.
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH
Confidence            4567889999998  466666666654 55 99999998887776654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=82.40  E-value=6.9  Score=31.33  Aligned_cols=46  Identities=30%  Similarity=0.342  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEecCCcc-hHHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGCG-TLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G-~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|+|.+ .+...+++ .+..+|+++|.+++.++.++..
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~  207 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI  207 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc
Confidence            4567889999999865 34555554 4667999999999887777654

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=82.37  E-value=10  Score=31.74  Aligned_cols=80  Identities=19%  Similarity=0.086  Sum_probs=49.5

Q ss_pred             CCCCEEEEecCCcch-HH--HHHH--HcCCCeEEEEeCCHHH------------HHHHHHHHHhcCCCeEEEEccccccc
Q 027945           47 VSNKVVADFGCGCGT-LG--AAAT--LLGADQVIAIDIDSDS------------LELASENAADLELDIDFVQCDIRNLE  109 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~-~~--~~l~--~~~~~~v~~~D~~~~~------------~~~a~~~~~~~~~~~~~~~~d~~~~~  109 (216)
                      ..++++|-.|+++|. .+  +..+  +.|. +|++++.+...            .+.+...++..+.++..+.+|+.+..
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence            467899999988874 23  2222  2254 89999876432            23444444555667888999987732


Q ss_pred             ccc-------cCCCcccEEEEcCCC
Q 027945          110 WRV-------CSVGHVDTVVMNPPF  127 (216)
Q Consensus       110 ~~~-------~~~~~fD~v~~npp~  127 (216)
                      .-.       ...++.|++|.|.-.
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcc
Confidence            111       123569999987543

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=82.13  E-value=5.1  Score=30.50  Aligned_cols=81  Identities=16%  Similarity=0.119  Sum_probs=47.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC-------CCeEEEEcccccccccc----
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE-------LDIDFVQCDIRNLEWRV----  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~----  112 (216)
                      ..++++|-.|++.|.   +...+++.|. +|++++.++...+.....+...+       .++.++.+|+.+...-.    
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            356788888876542   3334444565 89999999877665554443322       25788899987632110    


Q ss_pred             ---cCCCcc-cEEEEcCCCC
Q 027945          113 ---CSVGHV-DTVVMNPPFG  128 (216)
Q Consensus       113 ---~~~~~f-D~v~~npp~~  128 (216)
                         ...++. |+||.+....
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~  103 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGIT  103 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCC
T ss_pred             HHHHHhCCCCeEEEECCCcC
Confidence               011225 9999876543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=81.94  E-value=7.5  Score=29.60  Aligned_cols=78  Identities=26%  Similarity=0.247  Sum_probs=52.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   +...+++.|. +|+.++.++..++.....+   +.++.++.+|+.+...-.       ...+
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   82 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAALSKFG   82 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            367789999987663   4555556665 8999999988777665544   336888999987643111       0112


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|++|.|....
T Consensus        83 ~id~li~~Ag~~   94 (261)
T 3n74_A           83 KVDILVNNAGIG   94 (261)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            489999887654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=81.91  E-value=6.2  Score=29.68  Aligned_cols=79  Identities=20%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             CCEEEEecCCcchHHHHHH----HcCCC------eEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc------
Q 027945           49 NKVVADFGCGCGTLGAAAT----LLGAD------QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV------  112 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~----~~~~~------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~------  112 (216)
                      ++++|-.|++ |.++..++    +.|..      +|++++.++..++.....+...+.++.++.+|+.+...-.      
T Consensus         2 ~k~vlITGas-ggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAG-KGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTT-SHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            3567777754 55554444    44543      8999999988777766666554556888999987632110      


Q ss_pred             -cCCCcccEEEEcCCCC
Q 027945          113 -CSVGHVDTVVMNPPFG  128 (216)
Q Consensus       113 -~~~~~fD~v~~npp~~  128 (216)
                       ...++.|++|.+....
T Consensus        81 ~~~~g~id~li~~Ag~~   97 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVG   97 (244)
T ss_dssp             HHHTSCCSEEEECCCCC
T ss_pred             HHhCCCCCEEEEcCCcC
Confidence             0113499999876543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=81.68  E-value=8.9  Score=29.65  Aligned_cols=82  Identities=16%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC-HHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ...++++|-.|++.|.   +...+++.|. +|+.++.+ ....+.....++..+.++.++.+|+.+...-.       ..
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3577899999987663   4455556566 88888654 45666666666665667889999987643111       01


Q ss_pred             CCcccEEEEcCCCC
Q 027945          115 VGHVDTVVMNPPFG  128 (216)
Q Consensus       115 ~~~fD~v~~npp~~  128 (216)
                      .++.|++|.|....
T Consensus       107 ~g~iD~lvnnAg~~  120 (271)
T 3v2g_A          107 LGGLDILVNSAGIW  120 (271)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCcEEEECCCCC
Confidence            13489999887654

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=81.56  E-value=11  Score=28.22  Aligned_cols=77  Identities=27%  Similarity=0.309  Sum_probs=46.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---cCCCcccE
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---CSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~fD~  120 (216)
                      .+++++|-.|++.|.   +...+++.|. +|++++.++..++.....+.    .++++.+|+.+...-.   ...++.|+
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~id~   79 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC----CCCEEEEeCCCHHHHHHHHHHcCCCCE
Confidence            356788888875442   2334444565 89999999876655443321    3567788887642111   12234899


Q ss_pred             EEEcCCCC
Q 027945          121 VVMNPPFG  128 (216)
Q Consensus       121 v~~npp~~  128 (216)
                      ||.+.-..
T Consensus        80 vi~~Ag~~   87 (244)
T 3d3w_A           80 LVNNAAVA   87 (244)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccC
Confidence            99876543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=81.55  E-value=3.4  Score=33.69  Aligned_cols=45  Identities=29%  Similarity=0.377  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-+|+|. |...+.+++. |..+|+++|.+++.++.++.
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            445788999999764 5666677754 55589999999988888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	4e-56
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	6e-56
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	5e-08
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	6e-08
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-06
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	1e-06
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	8e-06
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	2e-05
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	5e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	9e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-04
d1o9ga_	249	c.66.1.29 (A:) rRNA methyltransferase AviRa {Strep	2e-04
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	3e-04
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	3e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-04
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	0.001
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.002
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	0.003
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	0.003
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	0.004
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	0.004
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	0.004

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  175 bits (443), Expect = 4e-56
 Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 12/207 (5%)

Query: 2   KLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGT 61
           + K+L   L  L+ F NPKV LEQY T  + AS +L+ A  S GD+  KVVAD G G G 
Sbjct: 1   RKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTGV 59

Query: 62  LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV 121
           L   A LLGA +VI +++D +++++  EN  + +        D+     R      VD V
Sbjct: 60  LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR------VDIV 113

Query: 122 VMNPPFGTRKKGVDMDFLSMALKVASQAVYSLH--KTSTREHVKKAALRDFNASSAEVLC 179
           +MNPPFG+++K  D  FL  A +++   VYS+H  K   R  ++K +    +        
Sbjct: 114 IMNPPFGSQRKHADRPFLLKAFEISDV-VYSIHLAKPEVRRFIEKFS--WEHGFVVTHRL 170

Query: 180 ELRYDVPQLYKFHKKKEVDIAVDLWRF 206
             + ++P  + FH+KK   I VD++RF
Sbjct: 171 TTKIEIPLQFFFHRKKLERITVDIYRF 197

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  174 bits (442), Expect = 6e-56
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 16/207 (7%)

Query: 1   MKLK-QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGC 59
           M +K  LE  L  L+Q  N K  LEQYPT    A+  L    N  G++  + V D G G 
Sbjct: 1   MGIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYN-DGNIGGRSVIDAGTGN 59

Query: 60  GTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVD 119
           G L   + LLGA+ V A DID D++E A  N       ++F+  D+  +  +        
Sbjct: 60  GILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEISGKYD------ 109

Query: 120 TVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLC 179
           T +MNPPFG+  K  D  F+  A + +   +YS+     R+ +++      +    E   
Sbjct: 110 TWIMNPPFGSVVKHSDRAFIDKAFETSMW-IYSIGNAKARDFLRREFSARGDVFREE--- 165

Query: 180 ELRYDVPQLYKFHKKKEVDIAVDLWRF 206
           ++   VP++Y+ H      I   ++  
Sbjct: 166 KVYITVPRIYRHHSYDRARIEAVIFGV 192

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 5e-08
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 41  ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-LELDID 99
             +     +KVV D GCG G L   A   GA +V+ +D      +       + LE  I 
Sbjct: 28  YQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTIT 87

Query: 100 FVQCDIRNLEWRVCSVGHVDTVVM 123
            ++  I  +   V  V  + +  M
Sbjct: 88  LIKGKIEEVHLPVEKVDVIISEWM 111

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-DLELDIDFVQCD 104
              +KVV D G G G L   A   GA +VI I+  S S        A  L+  +  ++  
Sbjct: 31  LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 90

Query: 105 IRNLEWRVCSVGHVDTVVM 123
           +  +E  V  V  + +  M
Sbjct: 91  VEEVELPVEKVDIIISEWM 109

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
           +++V D   G G L     + G  +VIAI+ D  + +   EN    +++  +     D R
Sbjct: 108 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR 167

Query: 107 NLEWRVCSVGHVDTVVMNPPFGT 129
           +           D ++M     T
Sbjct: 168 DFPGEN----IADRILMGYVVRT 186

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-DLELDIDFVQC 103
               +K+V D GCG G L   A   GA  VI +D+ S                 I  ++ 
Sbjct: 35  DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRG 94

Query: 104 DIRNLEWRVCSVGHVDTVVM 123
            + ++      V  + +  M
Sbjct: 95  KLEDVHLPFPKVDIIISEWM 114

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 49  NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIR 106
              V D GCG G         G  +   +DI   S+  A   A +++    + F   D  
Sbjct: 25  GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY 84

Query: 107 NLEWRVCSVGH 117
                +     
Sbjct: 85  GRHMDLGKEFD 95

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86
           PT   +   ++  AE    DV      D GCG G +          +V AID + +++  
Sbjct: 16  PTAMEVRCLIMCLAEPGKNDV----AVDVGCGTGGV-TLELAGRVRRVYAIDRNPEAIST 70

Query: 87  ASENA--ADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALK 144
              N     L  ++  ++ D          +  +D  V+    G  ++   +  +   LK
Sbjct: 71  TEMNLQRHGLGDNVTLMEGDAPEALC---KIPDIDIAVVGGSGGELQE--ILRIIKDKLK 125

Query: 145 VASQAVYSLHKTSTREHVKKA 165
              + + +     T+    + 
Sbjct: 126 PGGRIIVTAILLETKFEAMEC 146

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 13/111 (11%)

Query: 30  PHIASRMLY-------TAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDS 81
           P +  R+ Y                + +   D G G   +       L     +A ++D 
Sbjct: 36  PTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD 95

Query: 82  DSLELASENAADLELDIDFVQCDIRNLEWRVCSV-----GHVDTVVMNPPF 127
                A +N     L        +      + ++        D  + NPPF
Sbjct: 96  MCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPF 146

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (93), Expect = 9e-05
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 27  PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSL 84
              P  A+++++             V + G G G L  +    +G   QVI+ +  +D  
Sbjct: 79  VIYPKDAAQIVHEG----DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA 134

Query: 85  ELASENAADLELD----IDFVQCDIRNLEWRVCSVGHVDTVVMNPP 126
           E A  N +            V  D+ + E    SV      ++ P 
Sbjct: 135 EHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPW 180

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 18  NPKVE-LEQYP---------TGPHIASRMLYTAENSFGDVSNKVVADFGCGCG-TLGAAA 66
           +P+   L+ Y            P+  S +    +   GD       D G G G  +  AA
Sbjct: 180 HPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDT----FMDLGSGVGNCVVQAA 235

Query: 67  TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
              G       +I  D+ +L      +L+         + N+E
Sbjct: 236 LECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} Length = 249

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 73  QVIAIDIDSDSLELASE-----NAADLELDIDFVQCDIRNLEW--RVCSVGHVDTVVMNP 125
           +        ++ + A        A    L       D+ +      V +    D V+ + 
Sbjct: 116 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDL 175

Query: 126 PFGTR 130
           P+G R
Sbjct: 176 PYGER 180

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD--QVIAIDIDSDSLELA 87
           P  +S +    +   GD     + D G G G + A          +V A +   +  +LA
Sbjct: 89  PKDSSFIAMMLDVKEGDR----IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLA 144

Query: 88  SENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNP 125
             N     L I+ V   +R++             +  P
Sbjct: 145 ESNLTKWGL-IERVTIKVRDISEGFDEKDVDALFLDVP 181

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 50  KVVADF-GCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108
           +V+  + G G        + + A  V AID+++ + E+   N          +   I  +
Sbjct: 4   RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGI 59

Query: 109 EWRVCSVGHVDTVVMNPPF 127
                     D ++M+PP 
Sbjct: 60  TLEEFDRLSFDMILMSPPC 78

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 12/88 (13%)

Query: 48  SNKVVADFGCGCGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLEL---------- 96
            + +  D G G G +    A          ++      + A     +             
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210

Query: 97  DIDFVQCDIRNLEWRVCSVGHVDTVVMN 124
           +    + D  + EWR   + +   + +N
Sbjct: 211 EYTLERGDFLSEEWR-ERIANTSVIFVN 237

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 11/102 (10%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQ---VIAIDIDSDSLELASENAADLELDIDFVQ 102
            V+ ++V   G G G +G       A     ++  DI+   LE  +     L   +    
Sbjct: 4   SVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFV 62

Query: 103 CDIRNLEWRVCSV-------GHVDTVVMNPPFGTRKKGVDMD 137
            D  N E    S        G V  +V N             
Sbjct: 63  VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQ 104

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 48  SNKVVADFGCGCGTLGAA-ATLLGAD-QVIAIDIDSDSLELASENAADLEL--DIDFVQC 103
               + + G G G + +     L     +  ++ D D+L+ A +N ++     ++   + 
Sbjct: 85  PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS 144

Query: 104 DIRNLEWRVCSVGHVDTVVMNPPF 127
           DI +          +  +      
Sbjct: 145 DIADFISDQMYDAVIADIPDPWNH 168

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 10/67 (14%), Positives = 15/67 (22%), Gaps = 2/67 (2%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQ 102
           G +    + D G G       A       +   D    + E   +         D     
Sbjct: 48  GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAV 107

Query: 103 CDIRNLE 109
                LE
Sbjct: 108 KFACELE 114

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 41  ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQ---VIAIDIDSDSLELASENAADLELD 97
           EN +    NKV    G G G +G     + A     VI I     S +   +       +
Sbjct: 2   ENYYYCGENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE 60

Query: 98  IDFVQCDIRNLE 109
                 D+   E
Sbjct: 61  SSGYAGDVSKKE 72

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 2/118 (1%)

Query: 53  ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV 112
                G      +  +    ++  I+     L        +   +I  +  D    E   
Sbjct: 80  LGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NIVPILGDATKPEEYR 138

Query: 113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDF 170
             V  VD +  +    T+ K + +D   + LK     + ++   S     +   +   
Sbjct: 139 ALVPKVDVIFEDVAQPTQAKIL-IDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFRE 195

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 45  GDVSNKVVADFGCGCGTLGAAATLLGADQ---VIAIDIDSDSLELASENAADLELDIDFV 101
           G ++ KV    G   G +GA+       +   V+  DI  +  +     AA+L     +V
Sbjct: 2   GRLTGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGK---AMAAELADAARYV 57

Query: 102 QCDIRNLEWR-------VCSVGHVDTVVMNPPFGTRKKGVDMD 137
             D+             V + G +  +V N          D  
Sbjct: 58  HLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYA 100

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 46  DVSNKVVADFGCGCGTLGAAATLLGADQ---VIAIDIDSDSL-ELASENAADLELDIDFV 101
           D+  +V    G   G LG       A+    V+    + +   E A +      ++    
Sbjct: 2   DLRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAF 60

Query: 102 QCDIRNLEWRVCSV-------GHVDTVVMNPPFGTRKKGVDMD 137
           +CD+ N E     +       G +DTVV       R    +  
Sbjct: 61  RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFP 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	100.0
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.98
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.81
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.81
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.78
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.78
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.78
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.78
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.75
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.73
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.7
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.66
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.65
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.65
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.63
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.62
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.62
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.61
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.6
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.6
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.59
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.59
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.59
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.58
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.57
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.57
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.57
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.55
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.55
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.54
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.52
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.49
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.48
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.48
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.47
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.46
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.46
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.45
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.45
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.44
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.43
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.43
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.42
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.39
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.37
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.37
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.37
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.37
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.36
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.36
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.35
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.34
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.34
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.33
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.33
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.33
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.31
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.3
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.28
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.26
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.23
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.22
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.2
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.18
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.13
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	99.12
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.11
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.1
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.09
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.03
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.03
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	99.01
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.01
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.01
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.97
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.96
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.95
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.93
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.89
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.85
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.78
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.78
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.75
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.71
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.68
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.64
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.64
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.64
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.62
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.57
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	98.51
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.44
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.42
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.02
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.9
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.87
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.87
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.86
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.81
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.77
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.73
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.71
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.56
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.39
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.76
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.44
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.4
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.27
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.22
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.13
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.05
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.03
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.98
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.71
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.58
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.54
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.25
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.21
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.15
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.15
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.08
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.99
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.95
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.88
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.8
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.8
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.76
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.74
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.7
d2dpma_	275	DNA methylase DpnM {Streptococcus pneumoniae [TaxI	94.7
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	94.67
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.65
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.65
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.64
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.63
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.56
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.54
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.48
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.37
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.34
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.31
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.23
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.1
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.02
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.87
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.73
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.71
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.67
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.67
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.67
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.6
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.53
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.52
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.45
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.36
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.27
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.02
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.96
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.9
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.81
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.57
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.34
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	92.25
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.09
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.02
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.9
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.59
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.2
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.44
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.42
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.19
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.76
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.11
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.95
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.87
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.74
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	88.47
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	87.35
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	87.3
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.11
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	87.01
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.79
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.59
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.57
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.41
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.92
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	85.18
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.18
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.78
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	84.15
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.89
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	82.63
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.73
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	81.1
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	80.54
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	80.44
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	80.41

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=6.4e-32  Score=205.30  Aligned_cols=194  Identities=30%  Similarity=0.473  Sum_probs=146.6

Q ss_pred             Cc-hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeC
Q 027945            1 MK-LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDI   79 (216)
Q Consensus         1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~   79 (216)
                      |+ |++|+..+..+..|.++..+.+||+|++++++.++..+... ....|++|||+|||+|.+++.++..|+.+|+++|+
T Consensus         1 ~~~k~~l~~~l~~~~~~~~~~~~leQy~T~~~~a~~~~~~~~~~-~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDi   79 (197)
T d1ne2a_           1 MGIKNDLEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDI   79 (197)
T ss_dssp             CCHHHHHHHHHHTSCCCC--------CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEES
T ss_pred             CcchHHHHHHHhcCCCCCCCCcccccCCCCHHHHHHHHHHHHHc-CCCCCCEEEEeCCCCcHHHHHHHHcCCCccccccc
Confidence            55 78999999999999999999999999999999999777665 77889999999999999999999988889999999


Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccH
Q 027945           80 DSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTR  159 (216)
Q Consensus        80 ~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  159 (216)
                      |+.+++.|++|+.    +++++++|+.+...   .   ||+|++||||+......+..+++.+++.+. .+|..++..++
T Consensus        80 d~~a~~~ar~N~~----~~~~~~~D~~~l~~---~---fD~Vi~NPPfg~~~~~~D~~fl~~a~~~~~-~iy~ih~~~~~  148 (197)
T d1ne2a_          80 DPDAIETAKRNCG----GVNFMVADVSEISG---K---YDTWIMNPPFGSVVKHSDRAFIDKAFETSM-WIYSIGNAKAR  148 (197)
T ss_dssp             CHHHHHHHHHHCT----TSEEEECCGGGCCC---C---EEEEEECCCC-------CHHHHHHHHHHEE-EEEEEEEGGGH
T ss_pred             CHHHHHHHHHccc----cccEEEEehhhcCC---c---ceEEEeCcccchhhhhchHHHHHHHHhcCC-eEEEehhhhHH
Confidence            9999999999975    47899999976531   3   999999999988877888899998888765 89999999999


Q ss_pred             HHHHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEee
Q 027945          160 EHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVPK  209 (216)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (216)
                      +++.... ....  .........+.+|..|.+|.++.+.+.|.+||+...
T Consensus       149 ~~i~~~~-~~~~--~~~~~~~~~~~lp~~y~~H~~~~~~i~V~~~rir~~  195 (197)
T d1ne2a_         149 DFLRREF-SARG--DVFREEKVYITVPRIYRHHSYDRARIEAVIFGVRNH  195 (197)
T ss_dssp             HHHHHHH-HHHE--EEEEEEEEEEECCSCCC------CEEEEEEEEEEES
T ss_pred             HHHHHHh-hcCc--eEEEEeeccCCCchhhhhcccceeEEEEEEEEEecc
Confidence            8887765 3222  333334455789999999999999999999998753

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.98  E-value=2e-30  Score=198.63  Aligned_cols=197  Identities=36%  Similarity=0.599  Sum_probs=159.9

Q ss_pred             chhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCH
Q 027945            2 KLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~   81 (216)
                      +|++|+.++.++..|.+++++.+||+||+.++..++..+.. .....|++|||+|||+|.+++.++++|+.+|+|+|+|+
T Consensus         1 ~~~~l~~~l~~~~~f~~~~~~l~qy~Tp~~~a~~~~~~~~~-~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~   79 (201)
T d1wy7a1           1 RKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYS-LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK   79 (201)
T ss_dssp             CCHHHHHHHHTSCCCSSCCGGGTCCCCCHHHHHHHHHHHHH-TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             CchHHHHHHccCCCCCCCCcccccCCCCHHHHHHHHHHHHh-cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcH
Confidence            58999999999999999999999999999999998866654 36778999999999999999999988888999999999


Q ss_pred             HHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCc--cH
Q 027945           82 DSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTS--TR  159 (216)
Q Consensus        82 ~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~  159 (216)
                      .+++.++.|++.++.+.+++.+|+..+..   .   ||+|++||||+......+..++..+..... .+|.++...  .+
T Consensus        80 ~~~~~a~~N~~~~~~~~~~~~~d~~~~~~---~---fD~Vi~nPP~~~~~~~~d~~~l~~~~~~~~-~v~~ih~~~~~~~  152 (201)
T d1wy7a1          80 EAVDVLIENLGEFKGKFKVFIGDVSEFNS---R---VDIVIMNPPFGSQRKHADRPFLLKAFEISD-VVYSIHLAKPEVR  152 (201)
T ss_dssp             HHHHHHHHHTGGGTTSEEEEESCGGGCCC---C---CSEEEECCCCSSSSTTTTHHHHHHHHHHCS-EEEEEEECCHHHH
T ss_pred             HHHHHHHHHHHHcCCCceEEECchhhhCC---c---CcEEEEcCccccccccccHHHHHHHHhhcc-cchhcccchHHHH
Confidence            99999999999998899999999876522   3   999999999998888888889988887765 777766544  34


Q ss_pred             HHHHHHHhhhcCCccceEEEEEeecCCccccccceeeeeEEEEEEEEEe
Q 027945          160 EHVKKAALRDFNASSAEVLCELRYDVPQLYKFHKKKEVDIAVDLWRFVP  208 (216)
Q Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (216)
                      +++.... +..+ ..........|.+|..+.+|.++...+.+.+|||.+
T Consensus       153 ~~i~~~~-~~~g-~~i~~~~~~~f~lp~~y~~H~~k~~~i~v~~~Rf~k  199 (201)
T d1wy7a1         153 RFIEKFS-WEHG-FVVTHRLTTKIEIPLQFFFHRKKLERITVDIYRFSK  199 (201)
T ss_dssp             HHHHHHH-HHTT-EEEEEEEEEEEEEC-----CCCCCEEEEEEEEEEEE
T ss_pred             HHHHHHH-hhcC-ceEEEEEEecccccccccccccccceEEEEEEEEEE
Confidence            5555544 3222 233444445678899999999999999999999986

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=3.3e-19  Score=133.64  Aligned_cols=154  Identities=19%  Similarity=0.243  Sum_probs=111.4

Q ss_pred             cccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEE
Q 027945           23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDF  100 (216)
Q Consensus        23 ~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~  100 (216)
                      ...+||+..+-+.+.+.+.   ....+.+|||++||+|.++++++++|+.+|+++|.|+.+++.++.|++.++.  ++++
T Consensus        19 ~~~RPt~~~vrealFn~l~---~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i   95 (182)
T d2fhpa1          19 DNTRPTTDKVKESIFNMIG---PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEV   95 (182)
T ss_dssp             CSSCCCCHHHHHHHHHHHC---SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             CCcCcCcHHHHHHHHHHHH---HhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence            3458898777776666553   2357889999999999999999999998999999999999999999998877  7999


Q ss_pred             EEcccccccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEE
Q 027945          101 VQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLC  179 (216)
Q Consensus       101 ~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (216)
                      +++|+..+.... ....+||+|++||||...   .....+..+.+.                      ..+. +++.++.
T Consensus        96 ~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~---~~~~~l~~i~~~----------------------~~L~-~~giIi~  149 (182)
T d2fhpa1          96 RKMDANRALEQFYEEKLQFDLVLLDPPYAKQ---EIVSQLEKMLER----------------------QLLT-NEAVIVC  149 (182)
T ss_dssp             EESCHHHHHHHHHHTTCCEEEEEECCCGGGC---CHHHHHHHHHHT----------------------TCEE-EEEEEEE
T ss_pred             ccccchhhhhhhcccCCCcceEEechhhhhh---HHHHHHHHHHHC----------------------CCCC-CCEEEEE
Confidence            999998865432 122359999999999643   223334433321                      1222 5666676


Q ss_pred             EEee--cCCcc---c-cccceeeeeEEEEEEE
Q 027945          180 ELRY--DVPQL---Y-KFHKKKEVDIAVDLWR  205 (216)
Q Consensus       180 ~~~~--~~~~~---~-~~~~~~~~~~~~~~~~  205 (216)
                      |+.-  .+|..   + ....+.+|.+.+.+||
T Consensus       150 E~~~~~~~~~~~~~~~~~~~k~YG~t~l~~~r  181 (182)
T d2fhpa1         150 ETDKTVKLPETIGTLKKTRETVYGITQVTIYR  181 (182)
T ss_dssp             EEETTCCCCSEETTEEEEEEEEETTEEEEEEE
T ss_pred             EcCCCCCCccCCCceEEEEEEeeCCEEEEEEe
Confidence            6652  33433   3 2344667889999987

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.4e-19  Score=134.62  Aligned_cols=153  Identities=17%  Similarity=0.178  Sum_probs=108.3

Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEE
Q 027945           24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQ  102 (216)
Q Consensus        24 ~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~  102 (216)
                      ..+||+..+.+.+.+.+...   ..+.++||++||+|.++++++++|+.+|+.+|.|+.+++.+++|++..+. +++++.
T Consensus        22 ~~RPt~~~vre~lfn~l~~~---~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~   98 (183)
T d2fpoa1          22 GLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN   98 (183)
T ss_dssp             -----CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CcCcCcHHHHHHHHhhhhcc---cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeee
Confidence            45788877777777666543   36779999999999999999999999999999999999999999998877 789999


Q ss_pred             cccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEEEEe
Q 027945          103 CDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELR  182 (216)
Q Consensus       103 ~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (216)
                      +|+..+....  ..+||+|++||||...   .....+..+.+.                      ..+. +++.++.|+.
T Consensus        99 ~d~~~~l~~~--~~~fDlIf~DPPY~~~---~~~~~l~~l~~~----------------------~~L~-~~~iIiiE~~  150 (183)
T d2fpoa1          99 SNAMSFLAQK--GTPHNIVFVDPPFRRG---LLEETINLLEDN----------------------GWLA-DEALIYVESE  150 (183)
T ss_dssp             SCHHHHHSSC--CCCEEEEEECCSSSTT---THHHHHHHHHHT----------------------TCEE-EEEEEEEEEE
T ss_pred             eccccccccc--ccccCEEEEcCccccc---hHHHHHHHHHHC----------------------CCCC-CCeEEEEEec
Confidence            9998865432  2359999999999743   223333333221                      1122 4555565554


Q ss_pred             e-----cCCccccc-cceeeeeEEEEEEEEE
Q 027945          183 Y-----DVPQLYKF-HKKKEVDIAVDLWRFV  207 (216)
Q Consensus       183 ~-----~~~~~~~~-~~~~~~~~~~~~~~~~  207 (216)
                      -     ..+..|.. ..+.++.+.+.+|+..
T Consensus       151 ~~~~~~~~~~~~~i~k~k~yG~t~i~~~~k~  181 (183)
T d2fpoa1         151 VENGLPTVPANWSLHREKVAGQVAYRLYQRE  181 (183)
T ss_dssp             GGGCSCCCCTTEEEEEEEEETTEEEEEEEEC
T ss_pred             CcCCcccCCCCcEEEEEEEeCcEEEEEEEEc
Confidence            2     23455654 3467799999999864

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3e-19  Score=141.51  Aligned_cols=172  Identities=19%  Similarity=0.167  Sum_probs=115.9

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCH
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDS   81 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~   81 (216)
                      +..++.+++..+.+.........-..|...++.++...+.. ....+.+|||+|||+|.+++.++.. +..+|+++|+|+
T Consensus        64 g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~-~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~  142 (274)
T d2b3ta1          64 GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALAR-LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMP  142 (274)
T ss_dssp             TCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHH-SCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH
T ss_pred             CcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhh-hcccccceeeeehhhhHHHHHHHhhCCcceeeeccchh
Confidence            44566677766666444444444445555666666666655 3345678999999999999999864 567999999999


Q ss_pred             HHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCC-cEEEEecCcc-
Q 027945           82 DSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ-AVYSLHKTST-  158 (216)
Q Consensus        82 ~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~-  158 (216)
                      .+++.|++|++.++. +++++++|+++..... .   ||+|++||||.....   ...+....+..+. .++  ....+ 
T Consensus       143 ~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~-~---fDlIvsNPPYi~~~~---~~~~~~v~~~eP~~AL~--~g~dGl  213 (274)
T d2b3ta1         143 DAVSLAQRNAQHLAIKNIHILQSDWFSALAGQ-Q---FAMIVSNPPYIDEQD---PHLQQGDVRFEPLTALV--AADSGM  213 (274)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEECCSTTGGGTTC-C---EEEEEECCCCBCTTC---HHHHSSGGGSSCSTTTB--CHHHHT
T ss_pred             HHHhHHHHHHHHhCcccceeeecccccccCCC-c---eeEEEecchhhhhhh---hcccccccccchhhhcc--cccccc
Confidence            999999999999998 7999999998754432 4   999999999986522   2222222222221 111  11111 


Q ss_pred             --HHHHHHHHhhhcCCccceEEEEEeecC
Q 027945          159 --REHVKKAALRDFNASSAEVLCELRYDV  185 (216)
Q Consensus       159 --~~~~~~~~~~~l~~~~~~~~~~~~~~~  185 (216)
                        -..+.+.+.+.|+ ++|.++.|+++..
T Consensus       214 ~~~~~i~~~a~~~L~-~~G~l~lEig~~q  241 (274)
T d2b3ta1         214 ADIVHIIEQSRNALV-SGGFLLLEHGWQQ  241 (274)
T ss_dssp             HHHHHHHHHHGGGEE-EEEEEEEECCSSC
T ss_pred             hHHHHHHHHHHHhcC-CCCEEEEEECchH
Confidence              2334455556666 7888888887644

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=4.9e-18  Score=125.93  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=81.0

Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027945           25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCD  104 (216)
Q Consensus        25 ~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d  104 (216)
                      ..||+..+.+.+.+++...  ..++.+|||+|||+|.++++++++|+ +|+++|.|+.+++.+++|++.++++.++...+
T Consensus        20 ~Rpt~~~v~e~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~   96 (171)
T d1ws6a1          20 ARPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALP   96 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSC
T ss_pred             CCCCcHHHHHHHHHHhhcc--ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeee
Confidence            4788888777777776554  34678999999999999999998886 89999999999999999999998866666666


Q ss_pred             ccccccc-ccCCCcccEEEEcCCCCCC
Q 027945          105 IRNLEWR-VCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       105 ~~~~~~~-~~~~~~fD~v~~npp~~~~  130 (216)
                      ...+... .....+||+|++||||+..
T Consensus        97 ~d~~~~~~~~~~~~fD~If~DPPY~~~  123 (171)
T d1ws6a1          97 VEVFLPEAKAQGERFTVAFMAPPYAMD  123 (171)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCTTSC
T ss_pred             hhcccccccccCCccceeEEccccccC
Confidence            6543221 1122359999999999753

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.78  E-value=3.3e-18  Score=128.25  Aligned_cols=153  Identities=17%  Similarity=0.220  Sum_probs=106.7

Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEE
Q 027945           24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDF  100 (216)
Q Consensus        24 ~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~  100 (216)
                      .-+||+..+-+.+.+.+...   ..+.++||++||||.++++++++|+.+|+.+|.|..+++.+++|++..+.   ...+
T Consensus        22 ~~RPt~~~vrealFn~l~~~---~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~   98 (183)
T d2ifta1          22 GLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEV   98 (183)
T ss_dssp             ------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred             CcCcCcHHHHHHHHHHhhhh---cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccc
Confidence            45888888888877777554   36779999999999999999999999999999999999999999998876   4677


Q ss_pred             EEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEEE
Q 027945          101 VQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCE  180 (216)
Q Consensus       101 ~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (216)
                      +..|+..+........+||+|++||||...   .....+..+...                      ..++ +++.++.|
T Consensus        99 ~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~---~~~~~l~~l~~~----------------------~~L~-~~~liiiE  152 (183)
T d2ifta1          99 INQSSLDFLKQPQNQPHFDVVFLDPPFHFN---LAEQAISLLCEN----------------------NWLK-PNALIYVE  152 (183)
T ss_dssp             ECSCHHHHTTSCCSSCCEEEEEECCCSSSC---HHHHHHHHHHHT----------------------TCEE-EEEEEEEE
T ss_pred             ccccccccccccccCCcccEEEechhHhhh---hHHHHHHHHHHh----------------------CCcC-CCcEEEEE
Confidence            888877654432223359999999999753   122233322221                      2222 56666666


Q ss_pred             Eee----cCCccccc-cceeeeeEEEEEEE
Q 027945          181 LRY----DVPQLYKF-HKKKEVDIAVDLWR  205 (216)
Q Consensus       181 ~~~----~~~~~~~~-~~~~~~~~~~~~~~  205 (216)
                      +.-    ..|..|+. ..+++|.+.+++|+
T Consensus       153 ~~~~~~~~~~~~~~~~k~kkyG~t~i~~~~  182 (183)
T d2ifta1         153 TEKDKPLITPENWTLLKEKTTGIVSYRLYQ  182 (183)
T ss_dssp             EESSSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred             ecCCCCCCCCCCcEEEEEEecCCEEEEEec
Confidence            653    33556644 45777999999986

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.78  E-value=2.2e-18  Score=125.52  Aligned_cols=131  Identities=15%  Similarity=0.212  Sum_probs=95.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ..+.+|||+|||+|.++++++++|+.+|+++|.|+.+++.+++|++.++.  +++++++|+..+....  ..+||+|++|
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~--~~~fDiIf~D   90 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL--TGRFDLVFLD   90 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--CSCEEEEEEC
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc--ccccceeEec
Confidence            57899999999999999999998988999999999999999999999988  6999999998865332  2359999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccceEEEEEee--cCCcc---c-cccceeeee
Q 027945          125 PPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSAEVLCELRY--DVPQL---Y-KFHKKKEVD  198 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~---~-~~~~~~~~~  198 (216)
                      |||...   .....+..+..                      .+.++ +++.++.|+.-  .+|..   + ....+.+|+
T Consensus        91 PPy~~~---~~~~~l~~i~~----------------------~~~L~-~~g~iiiE~~~~~~~~~~~~~~~i~~~k~yG~  144 (152)
T d2esra1          91 PPYAKE---TIVATIEALAA----------------------KNLLS-EQVMVVCETDKTVLLPKEIATLGIWKEKIYGI  144 (152)
T ss_dssp             CSSHHH---HHHHHHHHHHH----------------------TTCEE-EEEEEEEEEETTCCCCSEETTEEEEEEEEETT
T ss_pred             hhhccc---hHHHHHHHHHH----------------------CCCcC-CCeEEEEEeCCCCCCcccCCcceEEEEEecCC
Confidence            998532   11122221111                      12333 66666766652  22332   2 234467788


Q ss_pred             EEEEEEE
Q 027945          199 IAVDLWR  205 (216)
Q Consensus       199 ~~~~~~~  205 (216)
                      +.+++|.
T Consensus       145 t~i~~~~  151 (152)
T d2esra1         145 SKVTVYV  151 (152)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888874

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.2e-18  Score=136.16  Aligned_cols=176  Identities=19%  Similarity=0.173  Sum_probs=118.6

Q ss_pred             hhhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHH
Q 027945            3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD   82 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~   82 (216)
                      +..++.+++..+.|.........-..|...++.++..+.......+..+++|+|||+|..++.+++.+..+|+++|+|+.
T Consensus        65 ~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~  144 (271)
T d1nv8a_          65 GYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSK  144 (271)
T ss_dssp             TCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHH
T ss_pred             CCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhh
Confidence            44667777776666555444444444444555555555543333355689999999999999999877779999999999


Q ss_pred             HHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHH
Q 027945           83 SLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTRE  160 (216)
Q Consensus        83 ~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +++.|++|++.+++  ++.+..+|+.+.....  .++||+|++||||............     .- +...+.-...+.+
T Consensus       145 Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~--~~~fDlIVsNPPYI~~~~~l~~~~~-----~E-P~~AL~gg~dGl~  216 (271)
T d1nv8a_         145 AVEIARKNAERHGVSDRFFVRKGEFLEPFKEK--FASIEMILSNPPYVKSSAHLPKDVL-----FE-PPEALFGGEDGLD  216 (271)
T ss_dssp             HHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG--TTTCCEEEECCCCBCGGGSCTTSCC-----CS-CHHHHBCTTTSCH
T ss_pred             HHHHHHHHHHHcCCCceeEEeecccccccccc--cCcccEEEEcccccCcccccceeee-----ec-cccccccccchHH
Confidence            99999999999988  5788899998765432  2359999999999865322111100     00 0111111233445


Q ss_pred             HHHHHHhhhcCCccceEEEEEeecCCc
Q 027945          161 HVKKAALRDFNASSAEVLCELRYDVPQ  187 (216)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~  187 (216)
                      ++...+.+.++ ++|.++.|+++...+
T Consensus       217 ~~r~i~~~~L~-~~G~l~~Eig~~Q~~  242 (271)
T d1nv8a_         217 FYREFFGRYDT-SGKIVLMEIGEDQVE  242 (271)
T ss_dssp             HHHHHHHHCCC-TTCEEEEECCTTCHH
T ss_pred             HHHHHHHHhcC-CCCEEEEEECHHHHH
Confidence            55555656665 999999999986643

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1e-17  Score=137.95  Aligned_cols=127  Identities=17%  Similarity=0.260  Sum_probs=105.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      |.........++..+...+...++.+|||++||+|.+++.+++. ..+|+|+|+++.+++.|+.|++.|+. +++++.+|
T Consensus       190 fQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~  268 (358)
T d1uwva2         190 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN  268 (358)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             hccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccccceeeecc
Confidence            44556777777777777766777889999999999999999985 55999999999999999999999999 89999999


Q ss_pred             cccccccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecCcc
Q 027945          105 IRNLEWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKTST  158 (216)
Q Consensus       105 ~~~~~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  158 (216)
                      +.+..... ....++|+|+.|||    +.+.. ..++.+.+..+ ..+|++|+|.+
T Consensus       269 ~~~~~~~~~~~~~~~d~vilDPP----R~G~~-~~~~~l~~~~~~~ivYVSCnp~T  319 (358)
T d1uwva2         269 LEEDVTKQPWAKNGFDKVLLDPA----RAGAA-GVMQQIIKLEPIRIVYVSCNPAT  319 (358)
T ss_dssp             TTSCCSSSGGGTTCCSEEEECCC----TTCCH-HHHHHHHHHCCSEEEEEESCHHH
T ss_pred             hhhhhhhhhhhhccCceEEeCCC----CccHH-HHHHHHHHcCCCEEEEEeCCHHH
Confidence            98754322 12235999999999    88865 57888888665 69999999988

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=1.1e-16  Score=120.09  Aligned_cols=109  Identities=19%  Similarity=0.270  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD  104 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d  104 (216)
                      ||..++...++..+    ...++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.|++|++.+++  +++++++|
T Consensus        16 ~t~~eir~~il~~l----~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gd   90 (186)
T d1l3ia_          16 PTAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD   90 (186)
T ss_dssp             CCCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred             CChHHHHHHHHHhc----CCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECc
Confidence            68888878777654    55688999999999999999999864 5999999999999999999999987  79999999


Q ss_pred             cccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~  148 (216)
                      +.+.......   ||.|+++.+.+.     ....++.+.+.+++
T Consensus        91 a~~~~~~~~~---~D~v~~~~~~~~-----~~~~~~~~~~~Lkp  126 (186)
T d1l3ia_          91 APEALCKIPD---IDIAVVGGSGGE-----LQEILRIIKDKLKP  126 (186)
T ss_dssp             HHHHHTTSCC---EEEEEESCCTTC-----HHHHHHHHHHTEEE
T ss_pred             hhhcccccCC---cCEEEEeCcccc-----chHHHHHHHHHhCc
Confidence            9887766545   999999987533     34667777777653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=2.2e-16  Score=119.24  Aligned_cols=110  Identities=22%  Similarity=0.303  Sum_probs=84.3

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccccCCCccc
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      .+...++.+|||+|||+|.+++.+++.+ .+|+++|+|+.+++.|++|++.++.   ++++..+|+.+... +..   ||
T Consensus        47 ~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-~~~---fD  121 (194)
T d1dusa_          47 NVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-DRK---YN  121 (194)
T ss_dssp             HCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-TSC---EE
T ss_pred             hCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-cCC---ce
Confidence            3455678899999999999999999865 4999999999999999999998877   58999999987433 335   99


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC--CcEEEEecCcc
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS--QAVYSLHKTST  158 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~  158 (216)
                      +|++||||+... .....+++.+.+.+.  +.+++++....
T Consensus       122 ~Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~  161 (194)
T d1dusa_         122 KIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             EEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             EEEEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEEeCcC
Confidence            999999997542 112345666666654  35555555443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=6.1e-16  Score=119.85  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccE
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ......++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..++. ++.++++|+.+.++.+++   ||+
T Consensus        10 ~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~---fD~   85 (234)
T d1xxla_          10 KTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS---FDI   85 (234)
T ss_dssp             HHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC---EEE
T ss_pred             HHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc---cce
Confidence            333557889999999999999999999764 999999999999999999998887 799999999998876656   999


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          121 VVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       121 v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |++.-.+++..  .....++++.+.++
T Consensus        86 v~~~~~l~~~~--d~~~~l~~~~r~Lk  110 (234)
T d1xxla_          86 ITCRYAAHHFS--DVRKAVREVARVLK  110 (234)
T ss_dssp             EEEESCGGGCS--CHHHHHHHHHHHEE
T ss_pred             eeeeceeeccc--CHHHHHHHHHHeeC
Confidence            99988877652  34577888888876

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=3.1e-16  Score=122.95  Aligned_cols=111  Identities=23%  Similarity=0.232  Sum_probs=83.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI  105 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~  105 (216)
                      |-|+.+-+..++...+.. ...++++|||+|||+|.+++.+++.|. +|+|+|+|+.+++.|++|++.++++.++.++|+
T Consensus        99 FGTG~H~TT~l~l~~l~~-~~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~  176 (254)
T d2nxca1          99 FGTGHHETTRLALKALAR-HLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL  176 (254)
T ss_dssp             ---CCSHHHHHHHHHHHH-HCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cCccccchhhHHHHHHHh-hcCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccc
Confidence            556666666666666654 346788999999999999999998775 899999999999999999999999889999998


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+.... .+   ||+|++|..++..     ...++.+.+.++
T Consensus       177 ~~~~~~-~~---fD~V~ani~~~~l-----~~l~~~~~~~Lk  209 (254)
T d2nxca1         177 EAALPF-GP---FDLLVANLYAELH-----AALAPRYREALV  209 (254)
T ss_dssp             HHHGGG-CC---EEEEEEECCHHHH-----HHHHHHHHHHEE
T ss_pred             cccccc-cc---cchhhhccccccH-----HHHHHHHHHhcC
Confidence            764332 24   9999998653322     344455555544

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=1.2e-15  Score=117.59  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=82.6

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+.++...+. +++++++|+.++++.+++   ||+|++
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~---fD~v~~   87 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER---FHIVTC   87 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC---EEEEEE
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc---cccccc
Confidence            456788999999999999999998875 999999999999999999988877 799999999998876656   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .-.+++..  ....+++++.+.++
T Consensus        88 ~~~l~~~~--d~~~~l~~~~r~Lk  109 (231)
T d1vl5a_          88 RIAAHHFP--NPASFVSEAYRVLK  109 (231)
T ss_dssp             ESCGGGCS--CHHHHHHHHHHHEE
T ss_pred             cccccccC--CHHHHHHHHHHhcC
Confidence            88877663  34567888888876

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=2.6e-15  Score=113.41  Aligned_cols=97  Identities=16%  Similarity=0.145  Sum_probs=84.4

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEc
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ..++.+|||+|||+|..+..++++|. +|+|+|+++.+++.++.++...++ ++++...|+....+.. .   ||+|+++
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~---fD~I~~~  102 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDG-E---YDFILST  102 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCC-C---EEEEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccc-c---ccEEEEe
Confidence            34556999999999999999999876 999999999999999999998887 6899999998876643 5   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ..+++.+......+++++.+.++
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~L~  125 (198)
T d2i6ga1         103 VVMMFLEAQTIPGLIANMQRCTK  125 (198)
T ss_dssp             SCGGGSCTTHHHHHHHHHHHTEE
T ss_pred             eeeecCCHHHHHHHHHHHHHHcC
Confidence            99998866666788898888775

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.62  E-value=5.7e-15  Score=119.24  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=91.9

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccccccc-CCCcccEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVC-SVGHVDTV  121 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~-~~~~fD~v  121 (216)
                      ..++++|||++||+|.+++.+++.|+.+|+++|+++.+++.++.|++.|++   +++++++|++++..... ...+||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            347889999999999999999988888999999999999999999999987   68999999988654321 22359999


Q ss_pred             EEcCCCCCCCCCC-------CHHHHHHHHhhcC--CcEEE-EecCc-cHHHHHHHHhhhcCCccce
Q 027945          122 VMNPPFGTRKKGV-------DMDFLSMALKVAS--QAVYS-LHKTS-TREHVKKAALRDFNASSAE  176 (216)
Q Consensus       122 ~~npp~~~~~~~~-------~~~~l~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~  176 (216)
                      ++|||.....+..       +.+.++.+++...  +.++. +|.+. +.+.+...+.+.....+..
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~  287 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  287 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCe
Confidence            9999965442221       2345666666654  33443 44433 3555555554555433333

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=3.1e-15  Score=116.64  Aligned_cols=107  Identities=19%  Similarity=0.267  Sum_probs=85.2

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCC
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~  115 (216)
                      .+..+.......+.++|||+|||+|..+..+++.+. +|+|+|+|+.|++.|++++...+.+++++++|+.+++.+. . 
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~-~-  105 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-E-  105 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-C-
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhccccc-c-
Confidence            344444454566778999999999999999999876 9999999999999999999988888999999999987664 5 


Q ss_pred             CcccEEEEc-CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          116 GHVDTVVMN-PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       116 ~~fD~v~~n-pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                        ||+|++. -.+++........+++++.+.++
T Consensus       106 --fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lk  136 (251)
T d1wzna1         106 --FDAVTMFFSTIMYFDEEDLRKLFSKVAEALK  136 (251)
T ss_dssp             --EEEEEECSSGGGGSCHHHHHHHHHHHHHHEE
T ss_pred             --cchHhhhhhhhhcCChHHHHHHHHHHHHHcC
Confidence              9999984 34444433334567888888776

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.61  E-value=3.2e-15  Score=118.95  Aligned_cols=108  Identities=11%  Similarity=0.001  Sum_probs=87.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV  112 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~  112 (216)
                      .++..+.......++.+|||+|||+|.++..++++...+|+|+|+++.+++.|+.+....|+  +++++++|+.++++++
T Consensus        54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~  133 (282)
T d2o57a1          54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED  133 (282)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence            34444444434567899999999999999999976344999999999999999999998887  7999999999988766


Q ss_pred             cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++   ||+|++.-.+++..  .....++++.+.++
T Consensus       134 ~s---fD~V~~~~~l~h~~--d~~~~l~~~~~~Lk  163 (282)
T d2o57a1         134 NS---YDFIWSQDAFLHSP--DKLKVFQECARVLK  163 (282)
T ss_dssp             TC---EEEEEEESCGGGCS--CHHHHHHHHHHHEE
T ss_pred             cc---cchhhccchhhhcc--CHHHHHHHHHHhcC
Confidence            55   99999988876653  34567888888775

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=2e-15  Score=118.78  Aligned_cols=91  Identities=24%  Similarity=0.336  Sum_probs=78.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|.+++.+++++.++|+++|+|+.+++.++.|++.|++  +++++++|+.++.... .   ||.|++|
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~-~---~D~Ii~~  181 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGEN-I---ADRILMG  181 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCS-C---EEEEEEC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCC-C---CCEEEEC
Confidence            47899999999999999999988877999999999999999999999998  6999999999876543 4   9999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ||...      ..++..+++..+
T Consensus       182 ~p~~~------~~~l~~a~~~l~  198 (260)
T d2frna1         182 YVVRT------HEFIPKALSIAK  198 (260)
T ss_dssp             CCSSG------GGGHHHHHHHEE
T ss_pred             CCCch------HHHHHHHHhhcC
Confidence            98543      356777777765

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=8.2e-15  Score=112.11  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=81.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+.++.++++|+.+++..+++   ||+|++.-.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~---fD~I~~~~~  111 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKT---FDYVIFIDS  111 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTC---EEEEEEESC
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccccccCcC---ceEEEEecc
Confidence            3567999999999999999999765 899999999999999999988777889999999998876656   999999888


Q ss_pred             CCCCCCCCCHHHHHHHHhhcC
Q 027945          127 FGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +++.........++++.+.++
T Consensus       112 l~~~~~~d~~~~l~~i~~~Lk  132 (226)
T d1ve3a1         112 IVHFEPLELNQVFKEVRRVLK  132 (226)
T ss_dssp             GGGCCHHHHHHHHHHHHHHEE
T ss_pred             hhhCChhHHHHHHHHHHHHcC
Confidence            777633334467888888776

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.59  E-value=6.9e-15  Score=114.57  Aligned_cols=98  Identities=15%  Similarity=0.138  Sum_probs=78.5

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc-
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN-  124 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n-  124 (216)
                      ..++++|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+.+++++++|+.++.... .   ||+|++- 
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~-~---fD~i~~~~  109 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR-K---FDLITCCL  109 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSC-C---EEEEEECT
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhcccc-c---ccccceee
Confidence            35567999999999999999999876 9999999999999999999888889999999999876543 4   9999973 


Q ss_pred             CCCCCC-CCCCCHHHHHHHHhhcCC
Q 027945          125 PPFGTR-KKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       125 pp~~~~-~~~~~~~~l~~~~~~~~~  148 (216)
                      ..+++. .......+++.+.+.+++
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~Lkp  134 (246)
T d1y8ca_         110 DSTNYIIDSDDLKKYFKAVSNHLKE  134 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEE
T ss_pred             eeeeccCCHHHHHHHHHHHHHhCCC
Confidence            333333 223344678888887763

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.4e-14  Score=112.79  Aligned_cols=107  Identities=13%  Similarity=0.016  Sum_probs=85.4

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV  112 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~  112 (216)
                      ..+..+...+...++.+|||+|||+|..+..+++....+|+|+|+|+.+++.|+++.+..|+  +++++++|+.+... +
T Consensus        20 ~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~-~   98 (245)
T d1nkva_          20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N   98 (245)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S
T ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc-c
Confidence            34444555556678999999999999999999876445999999999999999999999887  59999999998743 3


Q ss_pred             cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          113 CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++   ||+|++.-.+++..  ....+++++.+.++
T Consensus        99 ~~---fD~v~~~~~~~~~~--d~~~~l~~~~r~Lk  128 (245)
T d1nkva_          99 EK---CDVAACVGATWIAG--GFAGAEELLAQSLK  128 (245)
T ss_dssp             SC---EEEEEEESCGGGTS--SSHHHHHHHTTSEE
T ss_pred             Cc---eeEEEEEehhhccC--CHHHHHHHHHHHcC
Confidence            35   99999876666552  34577888877766

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=6.2e-15  Score=119.20  Aligned_cols=119  Identities=20%  Similarity=0.186  Sum_probs=87.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccc-cCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRV-CSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~~fD~v~~n  124 (216)
                      .++++|||+|||+|.+++.+++ +..+|+++|+|+.+++.|++|++.||+ +++++++|+.++.... ...++||+|++|
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            4788999999999999999887 556999999999999999999999998 7999999998864332 122359999999


Q ss_pred             CCCCCCCCCCC-------HHHHHHHHhhcC-C--cEEEEecCc-cHHHHHHHH
Q 027945          125 PPFGTRKKGVD-------MDFLSMALKVAS-Q--AVYSLHKTS-TREHVKKAA  166 (216)
Q Consensus       125 pp~~~~~~~~~-------~~~l~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~  166 (216)
                      ||.........       ...+..+.+..+ +  .++.+|.+. +.+.+.+..
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v  275 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV  275 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHH
Confidence            99876644322       234455555554 2  444555543 344444443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.58  E-value=3.9e-14  Score=110.39  Aligned_cols=121  Identities=15%  Similarity=0.214  Sum_probs=89.6

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcc
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHV  118 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~f  118 (216)
                      .+...++.+|||+|||+|.++..+++.  +.++|+++|.++++++.|++|++.++.  ++++.++|+.+..... .   |
T Consensus        80 ~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~-~---f  155 (250)
T d1yb2a1          80 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ-M---Y  155 (250)
T ss_dssp             -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC-C---E
T ss_pred             HcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc-e---e
Confidence            335568899999999999999999975  356999999999999999999988754  8999999998865433 4   9


Q ss_pred             cEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHHhhhcCCccc
Q 027945          119 DTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAALRDFNASSA  175 (216)
Q Consensus       119 D~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (216)
                      |.|++|.|    ..+   ..++.+.+.+++...+++..++.+++.... ..+...++
T Consensus       156 D~V~ld~p----~p~---~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~-~~l~~~gf  204 (250)
T d1yb2a1         156 DAVIADIP----DPW---NHVQKIASMMKPGSVATFYLPNFDQSEKTV-LSLSASGM  204 (250)
T ss_dssp             EEEEECCS----CGG---GSHHHHHHTEEEEEEEEEEESSHHHHHHHH-HHSGGGTE
T ss_pred             eeeeecCC----chH---HHHHHHHHhcCCCceEEEEeCCcChHHHHH-HHHHHCCC
Confidence            99999988    333   345566666554444455555666666666 44543333

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=5.7e-15  Score=119.78  Aligned_cols=120  Identities=21%  Similarity=0.184  Sum_probs=88.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc-cCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV-CSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~~~~fD~v~~  123 (216)
                      .++.+|||+|||+|.+++.+++.|+.+|+++|+++.+++.|++|++.||+  +++++++|+.+..... ....+||+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            46889999999999999999998888999999999999999999999998  6899999998754332 12235999999


Q ss_pred             cCCCCCCCCCC-------CHHHHHHHHhhcC-C--cEEEEecCc-cHHHHHHHH
Q 027945          124 NPPFGTRKKGV-------DMDFLSMALKVAS-Q--AVYSLHKTS-TREHVKKAA  166 (216)
Q Consensus       124 npp~~~~~~~~-------~~~~l~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~  166 (216)
                      |||+.......       +...+..+.+..+ +  .++.+|... +.+.+.+.+
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v  277 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMI  277 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHH
Confidence            99987664332       2345566666654 2  333344443 344444443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.2e-15  Score=114.91  Aligned_cols=83  Identities=20%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc---cCCCcccEE
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV---CSVGHVDTV  121 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~---~~~~~fD~v  121 (216)
                      +..++||+|||+|.+++.++.+ +..+++|+|+++.+++.|+.|++.+++  ++.+++.+........   ..+++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3469999999999999998865 456999999999999999999999988  6888887765543321   133469999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      +|||||+..
T Consensus       141 vsNPPY~~~  149 (250)
T d2h00a1         141 MCNPPFFAN  149 (250)
T ss_dssp             EECCCCC--
T ss_pred             EecCccccc
Confidence            999999965

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.57  E-value=9.5e-14  Score=110.96  Aligned_cols=83  Identities=22%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEccccccccccc-CCCcccEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRVC-SVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~-~~~~fD~v~  122 (216)
                      .++.+|||++||+|.+++.+++.|+ +|+++|.|+.+++.|++|++.|+.   +++++++|++++..... ...+||+||
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            4678999999999999999998766 899999999999999999999987   58999999998754321 122499999


Q ss_pred             EcCCCCCC
Q 027945          123 MNPPFGTR  130 (216)
Q Consensus       123 ~npp~~~~  130 (216)
                      +|||....
T Consensus       210 lDPP~f~~  217 (309)
T d2igta1         210 TDPPKFGR  217 (309)
T ss_dssp             ECCCSEEE
T ss_pred             ECCCcccc
Confidence            99997544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=1.3e-14  Score=113.90  Aligned_cols=123  Identities=22%  Similarity=0.205  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcC--C--CeEEEEc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLE--L--DIDFVQC  103 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~--~--~~~~~~~  103 (216)
                      +..++.++..+    ...++.+|||+|||+|.+++.+++. + .++|+++|+++++++.|++|++...  .  ++.++++
T Consensus        82 pkD~s~Ii~~l----~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~  157 (264)
T d1i9ga_          82 PKDAAQIVHEG----DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS  157 (264)
T ss_dssp             HHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred             hHHHHHHHHHh----CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence            45555555554    4568999999999999999999986 3 5699999999999999999998642  2  7999999


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      |+.+....+..   ||.|++|.|    .++..++.+.++++.   ...+++..++.+++....
T Consensus       158 d~~~~~~~~~~---fDaV~ldlp----~P~~~l~~~~~~Lkp---GG~lv~~~P~i~Qv~~~~  210 (264)
T d1i9ga_         158 DLADSELPDGS---VDRAVLDML----APWEVLDAVSRLLVA---GGVLMVYVATVTQLSRIV  210 (264)
T ss_dssp             CGGGCCCCTTC---EEEEEEESS----CGGGGHHHHHHHEEE---EEEEEEEESSHHHHHHHH
T ss_pred             ccccccccCCC---cceEEEecC----CHHHHHHHHHhccCC---CCEEEEEeCccChHHHHH
Confidence            99887665545   999999987    444444444444443   334455556666665555

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.8e-15  Score=113.03  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++++...+. +++++++|+.++.+...+   ||+|++.-
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~---fD~I~~~~  135 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS---YDVIWIQW  135 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSC---EEEEEEES
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccc---cccccccc
Confidence            45679999999999999998766666999999999999999999987766 679999999998765545   99999988


Q ss_pred             CCCCCCCCCCHHHHHHHHhhcC
Q 027945          126 PFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       126 p~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .+++........+++++.+.++
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk  157 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLR  157 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEE
T ss_pred             ccccchhhhhhhHHHHHHHhcC
Confidence            8887754434567888888765

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.54  E-value=1.7e-14  Score=113.09  Aligned_cols=110  Identities=12%  Similarity=0.015  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccccc
Q 027945           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVC  113 (216)
Q Consensus        34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (216)
                      ......++..+...++.+|||+|||+|.++..++..++.+|+++|+++.+++.|++++...+ .++++++|+.++.+...
T Consensus        79 ~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~~~~~  157 (254)
T d1xtpa_          79 IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCCCCSS
T ss_pred             HHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc-cceeEEccccccccCCC
Confidence            33444555665666778999999999999999886556699999999999999998876433 57899999998877654


Q ss_pred             CCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          114 SVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .   ||+|++...+++........+++++.+.++
T Consensus       158 ~---fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lk  188 (254)
T d1xtpa_         158 T---YDLIVIQWTAIYLTDADFVKFFKHCQQALT  188 (254)
T ss_dssp             C---EEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             c---cceEEeeccccccchhhhHHHHHHHHHhcC
Confidence            5   999999999988755555678888888775

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.52  E-value=2.4e-14  Score=107.16  Aligned_cols=102  Identities=12%  Similarity=0.029  Sum_probs=81.5

Q ss_pred             hhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC-------------CCeEEEEcccccc
Q 027945           42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE-------------LDIDFVQCDIRNL  108 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~  108 (216)
                      ..+...++.+|||+|||+|..++.++++|. +|+|+|+|+.+++.|+++++..+             ..++++++|+.+.
T Consensus        14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             HHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence            334667889999999999999999999887 99999999999999999986532             2467888998886


Q ss_pred             cccc-cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          109 EWRV-CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       109 ~~~~-~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .... ..   ||+|++.-.+++.........++.+.+.++
T Consensus        93 ~~~~~~~---~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lk  129 (201)
T d1pjza_          93 TARDIGH---CAAFYDRAAMIALPADMRERYVQHLEALMP  129 (201)
T ss_dssp             THHHHHS---EEEEEEESCGGGSCHHHHHHHHHHHHHHSC
T ss_pred             ccccccc---eeEEEEEeeeEecchhhhHHHHHHHHHhcC
Confidence            6443 34   999999877777655555567788877766

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.49  E-value=7.7e-14  Score=109.05  Aligned_cols=109  Identities=16%  Similarity=0.081  Sum_probs=82.7

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++.+|||+|||+|..+..+++.+..+|+|+|+|+.+++.|+.++...+.  ++.+.++|+.......  .++||+|++.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~--~~~fD~V~~~  100 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL--GKEFDVISSQ  100 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC--SSCEEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc--cccceEEEEc
Confidence            46789999999999999999987877999999999999999999887665  6899999997654421  1239999998


Q ss_pred             CCCCCCCC--CCCHHHHHHHHhhcC-CcEEEEecCc
Q 027945          125 PPFGTRKK--GVDMDFLSMALKVAS-QAVYSLHKTS  157 (216)
Q Consensus       125 pp~~~~~~--~~~~~~l~~~~~~~~-~~~~~~~~~~  157 (216)
                      -..++...  .....+++.+.+.++ ++.+++.-+.
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            77776522  223467778888776 4444444333

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=3e-13  Score=106.37  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      +..++.++..+    ...++.+|||+|||+|.++..+++.  +.++|+++|+++++++.|++|++..+.  ++.+...|+
T Consensus        89 pkd~~~Ii~~l----~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~  164 (266)
T d1o54a_          89 PKDSSFIAMML----DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI  164 (266)
T ss_dssp             HHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred             hHHHHHHHHhh----CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence            44555555444    4568999999999999999999975  356999999999999999999999887  688889997


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ....... .   ||.|+.|.|    ..+.   .++++.+.+++...+++..++.+.+....
T Consensus       165 ~~~~~~~-~---~D~V~~d~p----~p~~---~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~  214 (266)
T d1o54a_         165 SEGFDEK-D---VDALFLDVP----DPWN---YIDKCWEALKGGGRFATVCPTTNQVQETL  214 (266)
T ss_dssp             GGCCSCC-S---EEEEEECCS----CGGG---THHHHHHHEEEEEEEEEEESSHHHHHHHH
T ss_pred             ccccccc-c---eeeeEecCC----CHHH---HHHHHHhhcCCCCEEEEEeCcccHHHHHH
Confidence            6543332 4   999999887    3333   45555555543334444444555555555

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=3.3e-13  Score=103.55  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=82.2

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .++.+|||+|||+|..+..+++.   +..+|+|+|+|+.|++.|+++++..+.  ++.+..+|..+.+...     +|+|
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~d~i  112 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN-----ASMV  112 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCS-----EEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccccc-----ceee
Confidence            46779999999999999999874   455999999999999999999987665  6788899988776543     9999


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEE
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~  152 (216)
                      ++.-.++..........++++.+.++ ++.++
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  144 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLV  144 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceee
Confidence            99888777755566688999998876 34343

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=4.7e-13  Score=101.73  Aligned_cols=100  Identities=13%  Similarity=-0.006  Sum_probs=78.4

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEE
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .+...++.+|||+|||+|..+..+++. +.++|+|+|+++.+++.|+++++..+ ++.++.+|+............+|+|
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v  129 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPLLFDASKPWKYSGIVEKVDLI  129 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-CceEEEeeccCccccccccceEEEE
Confidence            345678899999999999999999975 55699999999999999999988765 7999999998765544343458888


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          122 VMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       122 ~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+.+..    .....+++++.+.++
T Consensus       130 ~~~~~~~----~~~~~~l~~~~~~Lk  151 (209)
T d1nt2a_         130 YQDIAQK----NQIEILKANAEFFLK  151 (209)
T ss_dssp             EECCCST----THHHHHHHHHHHHEE
T ss_pred             EecccCh----hhHHHHHHHHHHHhc
Confidence            8876532    334467788877765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.4e-13  Score=103.22  Aligned_cols=100  Identities=14%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc------------------CCCeEEEEcccc
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------------------ELDIDFVQCDIR  106 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------------~~~~~~~~~d~~  106 (216)
                      ...++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|+.+....                  +.+++++++|+.
T Consensus        42 ~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            345778999999999999999999887 9999999999999998876532                  226899999998


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++....  .+.||+|+..-.+++........+++.+.+.++
T Consensus       121 ~l~~~~--~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lk  159 (229)
T d2bzga1         121 DLPRTN--IGKFDMIWDRGALVAINPGDRKCYADTMFSLLG  159 (229)
T ss_dssp             GGGGSC--CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE
T ss_pred             hccccc--cCceeEEEEEEEEEeccchhhHHHHHHHHhhcC
Confidence            876543  234999999888888876667778888888876

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=2.3e-13  Score=110.34  Aligned_cols=125  Identities=17%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHHH
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL------GADQVIAIDIDSDSLELASENAA   92 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~------~~~~v~~~D~~~~~~~~a~~~~~   92 (216)
                      .....+++.||..++..|...+.......++.+|||+|||+|.+.+.+..+      ...+++|+|+++.+++.|+.++.
T Consensus        88 ~~~~~g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~  167 (328)
T d2f8la1          88 HGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD  167 (328)
T ss_dssp             SSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH
T ss_pred             hcccCCeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH
Confidence            344567788999888877665544444556779999999999999888642      22379999999999999999999


Q ss_pred             hcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCC----------------CCCCHHHHHHHHhhcC
Q 027945           93 DLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK----------------KGVDMDFLSMALKVAS  147 (216)
Q Consensus        93 ~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~----------------~~~~~~~l~~~~~~~~  147 (216)
                      ..+....+.++|........ .   ||+|++||||....                ...+..++..+++.+.
T Consensus       168 ~~~~~~~~~~~d~~~~~~~~-~---fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk  234 (328)
T d2f8la1         168 LQRQKMTLLHQDGLANLLVD-P---VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK  234 (328)
T ss_dssp             HHTCCCEEEESCTTSCCCCC-C---EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE
T ss_pred             Hhhhhhhhhccccccccccc-c---ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcC
Confidence            88888888888887654443 4   99999999996431                1123457888887765

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=9.4e-13  Score=104.38  Aligned_cols=112  Identities=14%  Similarity=0.144  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      ..-+..++..++..+...++.+|||+|||.|.++..+++....+|+|+|+|+..++.|+++++..++  .+.+...|..+
T Consensus        34 ~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          34 EEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED  113 (280)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence            3456777888888877889999999999999999999976334999999999999999999999887  57777788765


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++   ..   ||.|++--.+.+........+++++.+.++
T Consensus       114 ~~---~~---fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk  147 (280)
T d2fk8a1         114 FA---EP---VDRIVSIEAFEHFGHENYDDFFKRCFNIMP  147 (280)
T ss_dssp             CC---CC---CSEEEEESCGGGTCGGGHHHHHHHHHHHSC
T ss_pred             hc---cc---hhhhhHhhHHHHhhhhhHHHHHHHHHhccC
Confidence            42   14   999999888877755555678888887765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.45  E-value=6.7e-13  Score=105.33  Aligned_cols=97  Identities=21%  Similarity=0.256  Sum_probs=81.4

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++.+|||+|||+|..+..+++. + ..+|+|+|+++.+++.|+++....+.++++.++|+.+.++.. .   ||+|++
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~---fD~v~~  100 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-K---YDIAIC  100 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-C---EEEEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-C---ceEEEE
Confidence            356789999999999999999975 2 358999999999999999999988888999999998876543 4   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcCC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVASQ  148 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~~  148 (216)
                      +..+++..  .....++++.+.+++
T Consensus       101 ~~~l~~~~--d~~~~l~~~~~~Lkp  123 (281)
T d2gh1a1         101 HAFLLHMT--TPETMLQKMIHSVKK  123 (281)
T ss_dssp             ESCGGGCS--SHHHHHHHHHHTEEE
T ss_pred             ehhhhcCC--CHHHHHHHHHHHcCc
Confidence            98887763  345678888888763

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-13  Score=105.98  Aligned_cols=107  Identities=10%  Similarity=0.039  Sum_probs=80.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|..+..+++.+..+|+++|+|+.+++.|+++....+.++.++..|+....... ..++||.|++|+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-PDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-CTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccc-ccccccceeeccc
Confidence            477899999999999999999876669999999999999999999887777888888877654333 3345999999876


Q ss_pred             CCCCCCC---CCHHHHHHHHhhcC-CcEEEEe
Q 027945          127 FGTRKKG---VDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus       127 ~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      .......   ....+++++.+.++ +++++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            5443222   22346777777776 4555443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=6e-13  Score=102.77  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc
Q 027945           33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV  112 (216)
Q Consensus        33 ~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~  112 (216)
                      ....+...+... ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++..     ..++.+|+.+++..+
T Consensus        28 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~~~~  100 (246)
T d2avna1          28 YHRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFPS  100 (246)
T ss_dssp             HHHHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSCT
T ss_pred             HHHHHHHHHHHh-cCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc-----ccccccccccccccc
Confidence            334444444332 23667999999999999999998765 99999999999999998743     246789999887665


Q ss_pred             cCCCcccEEEEc-CCCCCCCCCCCHHHHHHHHhhcC
Q 027945          113 CSVGHVDTVVMN-PPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       113 ~~~~~fD~v~~n-pp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++   ||+|++. ..+++..  ....+++++.+.+.
T Consensus       101 ~~---fD~ii~~~~~~~~~~--d~~~~l~~i~r~Lk  131 (246)
T d2avna1         101 GA---FEAVLALGDVLSYVE--NKDKAFSEIRRVLV  131 (246)
T ss_dssp             TC---EEEEEECSSHHHHCS--CHHHHHHHHHHHEE
T ss_pred             cc---ccceeeecchhhhhh--hHHHHHHHHHhhcC
Confidence            45   9999974 4555442  33467888888775

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-12  Score=105.34  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcC------------
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLE------------   95 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~------------   95 (216)
                      +..++.++..+    ...++.+|||+|||+|.+++.+++. + .++|+++|+++++++.|++|++..+            
T Consensus        84 pkD~~~Il~~l----~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~  159 (324)
T d2b25a1          84 PKDINMILSMM----DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP  159 (324)
T ss_dssp             HHHHHHHHHHH----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred             cccHHHHHHHh----CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            34455555544    4568999999999999999999975 3 5699999999999999999998642            


Q ss_pred             CCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCccHHHHHHHH
Q 027945           96 LDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVASQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus        96 ~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .++++.++|+.+..... ....||.|++|.|    .++..   +..+.+.+++...+++..++.+++....
T Consensus       160 ~nv~~~~~di~~~~~~~-~~~~fD~V~LD~p----~P~~~---l~~~~~~LKpGG~lv~~~P~i~Qv~~~~  222 (324)
T d2b25a1         160 DNVDFIHKDISGATEDI-KSLTFDAVALDML----NPHVT---LPVFYPHLKHGGVCAVYVVNITQVIELL  222 (324)
T ss_dssp             CCEEEEESCTTCCC--------EEEEEECSS----STTTT---HHHHGGGEEEEEEEEEEESSHHHHHHHH
T ss_pred             cceeEEecchhhccccc-CCCCcceEeecCc----CHHHH---HHHHHHhccCCCEEEEEeCCHHHHHHHH
Confidence            16899999998765432 2234999999988    33433   4555555553344444556666665555

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=2.6e-12  Score=101.93  Aligned_cols=111  Identities=16%  Similarity=0.183  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      ..-+..++..+...+...++.+|||+|||.|.+++.+++. |+ +|+|+++|+..++.|++++...|.  ++++..+|..
T Consensus        44 ~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~  122 (285)
T d1kpga_          44 QEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence            4567778888888888889999999999999999998865 65 999999999999999999988877  7899999987


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +.+.   +   ||.|++--.+.+........+++++.+.++
T Consensus       123 ~~~~---~---fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk  157 (285)
T d1kpga_         123 QFDE---P---VDRIVSIGAFEHFGHERYDAFFSLAHRLLP  157 (285)
T ss_dssp             GCCC---C---CSEEEEESCGGGTCTTTHHHHHHHHHHHSC
T ss_pred             cccc---c---ccceeeehhhhhcCchhHHHHHHHHHhhcC
Confidence            6532   4   999999888877655555678888888765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=1.5e-12  Score=99.26  Aligned_cols=94  Identities=18%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD  104 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d  104 (216)
                      +.+.+.+.++..+    ...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+.+++..+. ++.++++|
T Consensus        59 ~~P~~~a~~l~~l----~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d  134 (213)
T d1dl5a1          59 SQPSLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD  134 (213)
T ss_dssp             CCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             ccchhhHHHHHhh----hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc
Confidence            3456666666544    4568899999999999999999975 3 45899999999999999999999888 78999999


Q ss_pred             cccccccccCCCcccEEEEcCCCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      ..+..+..+.   ||+|+++....
T Consensus       135 ~~~~~~~~~~---fD~I~~~~~~~  155 (213)
T d1dl5a1         135 GYYGVPEFSP---YDVIFVTVGVD  155 (213)
T ss_dssp             GGGCCGGGCC---EEEEEECSBBS
T ss_pred             hHHccccccc---hhhhhhhccHH
Confidence            9887666555   99999987644

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=4.6e-12  Score=102.57  Aligned_cols=97  Identities=24%  Similarity=0.262  Sum_probs=77.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++++|||+|||+|.+++.+++.|+.+|+++|.++ +++.|+.+.+.++.  +++++++|+.+...+..+   ||+|+++
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~---~D~i~se  112 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPK---VDIIISE  112 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSC---EEEEEEC
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccc---eeEEEEE
Confidence            47889999999999999999999988999999996 67889998888877  799999999998766545   9999999


Q ss_pred             CCCCCCCCCCCH-HHHHHHHhhcC
Q 027945          125 PPFGTRKKGVDM-DFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~~~~-~~l~~~~~~~~  147 (216)
                      +..+........ ..+....+.++
T Consensus       113 ~~~~~~~~e~~~~~~~~a~~r~Lk  136 (328)
T d1g6q1_         113 WMGYFLLYESMMDTVLYARDHYLV  136 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEE
T ss_pred             ecceeeccchhHHHHHHHHHhccC
Confidence            887666444443 34444444443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.1e-12  Score=102.04  Aligned_cols=89  Identities=25%  Similarity=0.242  Sum_probs=71.2

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ..++++|||+|||+|.+++.+++.|+.+|+++|.++.+.. ++.+...++.  +++++++|+.+.......   ||+|++
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~---~D~Ivs  108 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEK---VDVIIS  108 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSC---EEEEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCcccc---ceEEEE
Confidence            3578999999999999999999998889999999998765 5555555555  799999999998766545   999999


Q ss_pred             cCCCCCCCCCCCHHH
Q 027945          124 NPPFGTRKKGVDMDF  138 (216)
Q Consensus       124 npp~~~~~~~~~~~~  138 (216)
                      ++..+..........
T Consensus       109 e~~~~~~~~e~~~~~  123 (311)
T d2fyta1         109 EWMGYFLLFESMLDS  123 (311)
T ss_dssp             CCCBTTBTTTCHHHH
T ss_pred             eeeeeecccccccHH
Confidence            988776644444433

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.37  E-value=2e-12  Score=99.12  Aligned_cols=91  Identities=9%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+.+...   +++++++|+.+..... +   ||+|++.-.
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~---~~~~~~~~~~~~~~~~-~---fD~I~~~~v   90 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQLPR-R---YDNIVLTHV   90 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCCCSS-C---EEEEEEESC
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc---cccccccccccccccc-c---cccccccce
Confidence            4667899999999999999998765 899999999999999987643   5899999998876543 4   999999888


Q ss_pred             CCCCCCCCCHHHHHHHH-hhcC
Q 027945          127 FGTRKKGVDMDFLSMAL-KVAS  147 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~-~~~~  147 (216)
                      +++.  ......+.++. +.++
T Consensus        91 leh~--~d~~~~l~~i~~~~Lk  110 (225)
T d2p7ia1          91 LEHI--DDPVALLKRINDDWLA  110 (225)
T ss_dssp             GGGC--SSHHHHHHHHHHTTEE
T ss_pred             eEec--CCHHHHHHHHHHHhcC
Confidence            8766  23456677776 4444

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=1.8e-11  Score=97.24  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR  106 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~  106 (216)
                      ..-+..++..+...+...++.+|||+|||.|.+++.+++. |+ +|+|+++|+..++.++.+++..++  .+.+...|..
T Consensus        43 ~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~  121 (291)
T d1kpia_          43 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence            5567778888888888889999999999999999999854 65 999999999999999999998887  5788888864


Q ss_pred             cccccccCCCcccEEEEcCCCCCCCCC-------CCHHHHHHHHhhcC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPFGTRKKG-------VDMDFLSMALKVAS  147 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~~~~~~~-------~~~~~l~~~~~~~~  147 (216)
                      .   .+++   ||.|++--.+.+....       ....+++++.+.++
T Consensus       122 ~---~~~~---fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk  163 (291)
T d1kpia_         122 E---FDEP---VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP  163 (291)
T ss_dssp             G---CCCC---CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC
T ss_pred             c---cccc---cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC
Confidence            2   2224   9999998888665331       23567888877765

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2.6e-12  Score=103.48  Aligned_cols=97  Identities=24%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++++|||+|||+|.+++.+++.|+.+|+++|.++. ...++++++.++.  +++++++|+.+......+   ||+|+++
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~---~D~ivs~  107 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEK---VDIIISE  107 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSC---EEEEEEC
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccce---eEEEeee
Confidence            378899999999999999999988889999999975 5777778888877  699999999998766545   9999998


Q ss_pred             CCCCCCCCC-CCHHHHHHHHhhcC
Q 027945          125 PPFGTRKKG-VDMDFLSMALKVAS  147 (216)
Q Consensus       125 pp~~~~~~~-~~~~~l~~~~~~~~  147 (216)
                      +..+..... ....++....+.++
T Consensus       108 ~~~~~l~~e~~~~~~l~~~~r~Lk  131 (316)
T d1oria_         108 WMGYCLFYESMLNTVLHARDKWLA  131 (316)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEE
T ss_pred             eeeeeeccHHHHHHHHHHHHhcCC
Confidence            887665333 33445555555543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.7e-12  Score=97.09  Aligned_cols=98  Identities=19%  Similarity=0.174  Sum_probs=78.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC------C
Q 027945           26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL------D   97 (216)
Q Consensus        26 ~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~------~   97 (216)
                      +-+.+.+.+.|+..+..  ...++.+|||+|||+|..+..+++. + ..+|+++|+++++++.|++|++..+.      +
T Consensus        56 ~is~P~~~a~~le~L~~--~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~  133 (224)
T d1i1na_          56 TISAPHMHAYALELLFD--QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR  133 (224)
T ss_dssp             EECCHHHHHHHHHHTTT--TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS
T ss_pred             hhhhhHHHHHHHHHHhh--ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc
Confidence            34457777777776533  2357889999999999999998875 3 56999999999999999999987654      6


Q ss_pred             eEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      +.++.+|..........   ||+|+++....
T Consensus       134 ~~~~~gD~~~~~~~~~~---fD~I~~~~~~~  161 (224)
T d1i1na_         134 VQLVVGDGRMGYAEEAP---YDAIHVGAAAP  161 (224)
T ss_dssp             EEEEESCGGGCCGGGCC---EEEEEECSBBS
T ss_pred             eEEEEeecccccchhhh---hhhhhhhcchh
Confidence            88999999887766655   99999976543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=1.1e-11  Score=95.08  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  108 (216)
                      .+++.++.. +..+...+|.+|||+|||+|..+..+++. | .++|+++|+++.+++.++.+++..+ ++..+..|+...
T Consensus        57 Klaa~i~~~-l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-~~~~i~~d~~~~  134 (227)
T d1g8aa_          57 KLGAAIMNG-LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NIVPILGDATKP  134 (227)
T ss_dssp             HHHHHHHTT-CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-TEEEEECCTTCG
T ss_pred             HHHHHHHcc-ccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC-CceEEEEECCCc
Confidence            455544433 34446678999999999999999999986 3 5699999999999999999987654 677788887654


Q ss_pred             cccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          109 EWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       109 ~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .........+|+|++|.+..    .....+++.+.+.++
T Consensus       135 ~~~~~~~~~vD~i~~d~~~~----~~~~~~l~~~~~~Lk  169 (227)
T d1g8aa_         135 EEYRALVPKVDVIFEDVAQP----TQAKILIDNAEVYLK  169 (227)
T ss_dssp             GGGTTTCCCEEEEEECCCST----THHHHHHHHHHHHEE
T ss_pred             ccccccccceEEEEEEcccc----chHHHHHHHHHHhcc
Confidence            33221223599999998743    334457777777765

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=9.7e-12  Score=98.89  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=77.9

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CeEEEEcccccccccccCCCcccEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++....+.     ...+..+|+...........+||.|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            3567999999999999999999876 899999999999999999877654     3556677766543222122349999


Q ss_pred             EE-cCCCCCCCCC-----CCHHHHHHHHhhcCCcEEEEecCccHHHH
Q 027945          122 VM-NPPFGTRKKG-----VDMDFLSMALKVASQAVYSLHKTSTREHV  162 (216)
Q Consensus       122 ~~-npp~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++ ...+.+....     .....++++.+.+++...+++...+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~  180 (292)
T d1xvaa_         134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYI  180 (292)
T ss_dssp             EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHH
Confidence            86 3344443221     23457888888876332333333334444

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.34  E-value=1.1e-11  Score=93.65  Aligned_cols=113  Identities=20%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           49 NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ...|||+|||+|..++.+|+. +...++|+|+++.++..|..+++..++ ++.++++|+..+.... ..+.+|.|+++-|
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~-~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVF-EPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHC-CTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhccc-Cchhhhccccccc
Confidence            458999999999999999975 567999999999999999999999988 8999999998765222 2234998886544


Q ss_pred             CCCCCC------CCCHHHHHHHHhhcCCcEEEEecCccHHHH
Q 027945          127 FGTRKK------GVDMDFLSMALKVASQAVYSLHKTSTREHV  162 (216)
Q Consensus       127 ~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      -.....      -....+++.+.+.++++..+.+.++...+.
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~  150 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF  150 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHH
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHH
Confidence            333211      123577887777765333333334444443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=5.2e-12  Score=99.42  Aligned_cols=86  Identities=16%  Similarity=0.230  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW  110 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~  110 (216)
                      +...+...+... ...++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|+++..    +++++++|+.++++
T Consensus        69 l~~~~~~~l~~~-~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~----~~~~~~~d~~~l~~  143 (268)
T d1p91a_          69 LRDAIVAQLRER-LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFCVASSHRLPF  143 (268)
T ss_dssp             HHHHHHHHHHHH-SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTSCSB
T ss_pred             HHHHHHHHHHHh-cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc----cccceeeehhhccC
Confidence            444444444443 44567799999999999999999864 4599999999999999987743    58999999999988


Q ss_pred             cccCCCcccEEEEcC
Q 027945          111 RVCSVGHVDTVVMNP  125 (216)
Q Consensus       111 ~~~~~~~fD~v~~np  125 (216)
                      .+.+   ||+|++.-
T Consensus       144 ~~~s---fD~v~~~~  155 (268)
T d1p91a_         144 SDTS---MDAIIRIY  155 (268)
T ss_dssp             CTTC---EEEEEEES
T ss_pred             CCCC---EEEEeecC
Confidence            7766   99999753

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.33  E-value=4.1e-12  Score=98.03  Aligned_cols=99  Identities=14%  Similarity=0.187  Sum_probs=76.6

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCC
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~  115 (216)
                      ++..++......++++|||+|||+|.++..+++.+ .+|+++|+|+.+++.++.+..... +++++++|+.++...... 
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~-n~~i~~~D~l~~~~~~~~-   85 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD-NFQVLNKDILQFKFPKNQ-   85 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC-SEEEECCCGGGCCCCSSC-
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhccc-chhhhhhhhhhccccccc-
Confidence            34444444455688999999999999999999875 499999999999999998875433 799999999998765423 


Q ss_pred             CcccEEEEcCCCCCCCCCCCHHHHHHHHh
Q 027945          116 GHVDTVVMNPPFGTRKKGVDMDFLSMALK  144 (216)
Q Consensus       116 ~~fD~v~~npp~~~~~~~~~~~~l~~~~~  144 (216)
                        ...|++|.||+-.     .+.+...+.
T Consensus        86 --~~~vv~NLPYnIs-----s~il~~ll~  107 (235)
T d1qama_          86 --SYKIFGNIPYNIS-----TDIIRKIVF  107 (235)
T ss_dssp             --CCEEEEECCGGGH-----HHHHHHHHH
T ss_pred             --cceeeeeehhhhh-----HHHHHHHHh
Confidence              5678999999865     244555543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.33  E-value=5.6e-12  Score=105.49  Aligned_cols=121  Identities=26%  Similarity=0.253  Sum_probs=93.1

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC--------------CCeEEEEeCCHHHH
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--------------ADQVIAIDIDSDSL   84 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~--------------~~~v~~~D~~~~~~   84 (216)
                      .....++|.||.+++..|+..+    .+..+.+|+|++||+|.+.+.+.++-              ...++|+|+++.++
T Consensus       137 ~~k~~G~f~TP~~Iv~~mv~ll----~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~  212 (425)
T d2okca1         137 KKSGAGQYFTPRPLIQAMVDCI----NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVV  212 (425)
T ss_dssp             TTTCCGGGCCCHHHHHHHHHHH----CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHH
T ss_pred             hhccchhhccchhhhHhhheec----cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHH
Confidence            4556789999999999887755    33467899999999999998887631              12599999999999


Q ss_pred             HHHHHHHHhcCC---CeEEEEcccccccccccCCCcccEEEEcCCCCCCC---------------CCCCHHHHHHHHhhc
Q 027945           85 ELASENAADLEL---DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK---------------KGVDMDFLSMALKVA  146 (216)
Q Consensus        85 ~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~---------------~~~~~~~l~~~~~~~  146 (216)
                      ..|+.|+-..+.   ...+...|........ .   ||+|++||||+...               ...+..|+..++..+
T Consensus       213 ~la~~n~~l~g~~~~~~~i~~~d~l~~~~~~-~---fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~L  288 (425)
T d2okca1         213 TLASMNLYLHGIGTDRSPIVCEDSLEKEPST-L---VDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLML  288 (425)
T ss_dssp             HHHHHHHHHTTCCSSCCSEEECCTTTSCCSS-C---EEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHE
T ss_pred             HHHHhhhhhcCCccccceeecCchhhhhccc-c---cceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhc
Confidence            999999988776   4567888887654433 4   99999999997641               112356888888876


Q ss_pred             C
Q 027945          147 S  147 (216)
Q Consensus       147 ~  147 (216)
                      .
T Consensus       289 k  289 (425)
T d2okca1         289 K  289 (425)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.33  E-value=2.1e-11  Score=93.68  Aligned_cols=111  Identities=14%  Similarity=0.076  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc
Q 027945           31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (216)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  109 (216)
                      .+++.++.. +..+...++.+|||+|||+|..+..+++.+ ...|+|+|+++.+++.++.++...+ ++.++.+|.....
T Consensus        58 klaA~i~~g-l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-ni~~i~~d~~~~~  135 (230)
T d1g8sa_          58 KLAAAIIKG-LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-NIIPILGDANKPQ  135 (230)
T ss_dssp             HHHHHHHTT-CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-TEEEEECCTTCGG
T ss_pred             HHHHHHHhh-HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc-ccceEEEeeccCc
Confidence            444444433 344456788999999999999999999863 5699999999999999999876654 6778888887755


Q ss_pred             ccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          110 WRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       110 ~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ........+|+++.+..  ..  .....++.++.+.++
T Consensus       136 ~~~~~~~~v~~i~~~~~--~~--~~~~~~l~~~~r~LK  169 (230)
T d1g8sa_         136 EYANIVEKVDVIYEDVA--QP--NQAEILIKNAKWFLK  169 (230)
T ss_dssp             GGTTTCCCEEEEEECCC--ST--THHHHHHHHHHHHEE
T ss_pred             ccccccceeEEeecccc--ch--HHHHHHHHHHHHhcc
Confidence            43212112444444433  21  233456777777665

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.31  E-value=4.3e-11  Score=90.29  Aligned_cols=115  Identities=20%  Similarity=0.202  Sum_probs=85.0

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEEcC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVMNP  125 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~np  125 (216)
                      ....|||+|||+|..++.+|+. +...++|+|+++.++..|..++...++ ++.++.+|+.++.... ..+.+|.|+++-
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~-~~~~~~~i~i~f  109 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYF-EDGEIDRLYLNF  109 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTS-CTTCCSEEEEES
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhc-cCCceehhcccc
Confidence            3458999999999999999975 566999999999999999999999888 8999999998865322 233499998876


Q ss_pred             CCCCCCC------CCCHHHHHHHHhhcCCcEEEEecCccHHHHH
Q 027945          126 PFGTRKK------GVDMDFLSMALKVASQAVYSLHKTSTREHVK  163 (216)
Q Consensus       126 p~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      |-.....      -....+++.+.+.+.+...+.+.++...|..
T Consensus       110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~  153 (204)
T d1yzha1         110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFE  153 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHH
T ss_pred             cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHH
Confidence            6443321      2346788888887764444444555544443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.30  E-value=8e-12  Score=95.02  Aligned_cols=93  Identities=17%  Similarity=0.181  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR  106 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~  106 (216)
                      ..+.+.+.|+..+    ...++.+|||+|||+|..+..+++.-..+|+++|.++..++.|+.+++..+. ++.++++|..
T Consensus        62 s~P~~~a~ml~~L----~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~  137 (215)
T d1jg1a_          62 SAPHMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS  137 (215)
T ss_dssp             CCHHHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             hhhhhHHHHHHhh----ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccc
Confidence            4467777777665    4568889999999999999999976234899999999999999999999987 8999999998


Q ss_pred             cccccccCCCcccEEEEcCCC
Q 027945          107 NLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp~  127 (216)
                      +.......   ||.|++....
T Consensus       138 ~g~~~~~p---fD~Iiv~~a~  155 (215)
T d1jg1a_         138 KGFPPKAP---YDVIIVTAGA  155 (215)
T ss_dssp             GCCGGGCC---EEEEEECSBB
T ss_pred             cCCcccCc---ceeEEeeccc
Confidence            86665555   9999987653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.28  E-value=2.4e-11  Score=92.93  Aligned_cols=91  Identities=20%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR  106 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~  106 (216)
                      -+.+.....|+..+    ...++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++++.... +++++++|..
T Consensus        53 ~~~p~~~a~ml~~L----~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~-nv~~~~~d~~  126 (224)
T d1vbfa_          53 TTALNLGIFMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGT  126 (224)
T ss_dssp             ECCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGG
T ss_pred             eehhhhHHHHHHHh----hhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhccc-ccccccCchh
Confidence            34566666666543    45688999999999999999999875 599999999999999999877543 8999999987


Q ss_pred             cccccccCCCcccEEEEcCC
Q 027945          107 NLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus       107 ~~~~~~~~~~~fD~v~~npp  126 (216)
                      ......+.   ||.|+++..
T Consensus       127 ~g~~~~~p---fD~Iiv~~a  143 (224)
T d1vbfa_         127 LGYEEEKP---YDRVVVWAT  143 (224)
T ss_dssp             GCCGGGCC---EEEEEESSB
T ss_pred             hcchhhhh---HHHHHhhcc
Confidence            75555445   999998755

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.26  E-value=2.1e-11  Score=95.03  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=78.9

Q ss_pred             hcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCccc
Q 027945           43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      .+...+.++|||+|||+|..+..++++ +..+++++|+ +.+++.++.++...+.  +++++.+|+++....  .   ||
T Consensus        75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~--~---~D  148 (253)
T d1tw3a2          75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR--K---AD  148 (253)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS--C---EE
T ss_pred             hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhccc--c---hh
Confidence            333455689999999999999999976 4568999998 6799999999988876  799999999764332  3   99


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|++.-.+++..+......++++.+.++
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~Lk  176 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALE  176 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcC
Confidence            9999888776644444577888888875

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=4e-11  Score=90.35  Aligned_cols=84  Identities=15%  Similarity=0.161  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      ++.+|||+|||+|.++..++     +++|+|+|+.+++.|+.+      +++++++|+.+++..+.+   ||+|++.-.+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~~---fD~I~~~~~l  101 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDES---FDFALMVTTI  101 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTC---EEEEEEESCG
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------cccccccccccccccccc---cccccccccc
Confidence            45589999999999877763     468999999999999875      589999999988776555   9999998888


Q ss_pred             CCCCCCCCHHHHHHHHhhcC
Q 027945          128 GTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~  147 (216)
                      ++..  ....+++++.+.++
T Consensus       102 ~h~~--d~~~~l~~~~~~L~  119 (208)
T d1vlma_         102 CFVD--DPERALKEAYRILK  119 (208)
T ss_dssp             GGSS--CHHHHHHHHHHHEE
T ss_pred             cccc--ccccchhhhhhcCC
Confidence            7773  34567888888775

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.22  E-value=5.9e-13  Score=103.35  Aligned_cols=102  Identities=20%  Similarity=0.303  Sum_probs=79.8

Q ss_pred             cccccc-CCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 027945           20 KVELEQ-YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDI   98 (216)
Q Consensus        20 ~~~~~~-~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~   98 (216)
                      ..+++| |-....+...++..+    ...++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++.+..... ++
T Consensus         4 ~~k~GQnFL~d~~ii~kIv~~~----~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~-n~   77 (245)
T d1yuba_           4 NIKYSQNFLTSEKVLNQIIKQL----NLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNT-RV   77 (245)
T ss_dssp             CCCSCCCBCCCTTTHHHHHHHC----CCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCS-EE
T ss_pred             CCCCCCcccCCHHHHHHHHHhc----CCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhcc-ch
Confidence            345566 555556666666443    445778999999999999999998754 99999999999988877665432 79


Q ss_pred             EEEEcccccccccccCCCcccEEEEcCCCCCC
Q 027945           99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus        99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      +++++|+.++......   ++.|++|.||+-.
T Consensus        78 ~ii~~D~l~~~~~~~~---~~~vv~NLPY~Is  106 (245)
T d1yuba_          78 TLIHQDILQFQFPNKQ---RYKIVGNIPYHLS  106 (245)
T ss_dssp             EECCSCCTTTTCCCSS---EEEEEEECCSSSC
T ss_pred             hhhhhhhhccccccce---eeeEeeeeehhhh
Confidence            9999999998766534   7889999999866

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9e-11  Score=94.80  Aligned_cols=109  Identities=10%  Similarity=0.104  Sum_probs=78.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-------CC---CeEEEEc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-------EL---DIDFVQC  103 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-------~~---~~~~~~~  103 (216)
                      .++..++..+...++.+|||+|||+|.+++.+++. ++.+++|+|+++.+++.|+.+.+..       |.   +++++++
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            34444445556678899999999999999999864 6778999999999999998876642       22   6999999


Q ss_pred             ccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          104 DIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       104 d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      |+.+.+..+.. ...|+|++|--++.   ......+.++.+.++
T Consensus       218 d~~~~~~~~~~-~~advi~~~~~~f~---~~~~~~l~e~~r~LK  257 (328)
T d1nw3a_         218 DFLSEEWRERI-ANTSVIFVNNFAFG---PEVDHQLKERFANMK  257 (328)
T ss_dssp             CTTSHHHHHHH-HHCSEEEECCTTTC---HHHHHHHHHHHTTCC
T ss_pred             ccccccccccc-CcceEEEEcceecc---hHHHHHHHHHHHhCC
Confidence            99987755422 01578888644332   122356677776665

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.3e-11  Score=92.51  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=76.3

Q ss_pred             HHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCC
Q 027945           39 TAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        39 ~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~  116 (216)
                      .++......++..|||+|+|.|.++..+++.+. +|+++|+|+.+++..++.......  +++++.+|+.....+.    
T Consensus        12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~----   86 (278)
T d1zq9a1          12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF----   86 (278)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC----
T ss_pred             HHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh----
Confidence            333333455788999999999999999998765 999999999999999998876544  7999999999876654    


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHHhh
Q 027945          117 HVDTVVMNPPFGTRKKGVDMDFLSMALKV  145 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~~~~~~~l~~~~~~  145 (216)
                       ++.||+|.||+-.     .+.+...+..
T Consensus        87 -~~~vV~NLPY~Is-----s~il~~~~~~  109 (278)
T d1zq9a1          87 -FDTCVANLPYQIS-----SPFVFKLLLH  109 (278)
T ss_dssp             -CSEEEEECCGGGH-----HHHHHHHHHC
T ss_pred             -hhhhhcchHHHHH-----HHHHHHHHhh
Confidence             7899999999754     3445554443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.13  E-value=1.3e-11  Score=93.90  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027945           27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCD  104 (216)
Q Consensus        27 ~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d  104 (216)
                      .||.+++..|+..+    ...++.+|||+|||+|.+...+.+.  ....++|+|+++.++..++        +..++++|
T Consensus         2 ~TP~~i~~~m~~l~----~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--------~~~~~~~~   69 (223)
T d2ih2a1           2 ETPPEVVDFMVSLA----EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--------WAEGILAD   69 (223)
T ss_dssp             CCCHHHHHHHHHHC----CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--------TEEEEESC
T ss_pred             CCCHHHHHHHHHhc----CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--------cceeeeee
Confidence            58888888888764    3457789999999999998887753  3558999999986543322        35778888


Q ss_pred             cccccccccCCCcccEEEEcCCCCCC
Q 027945          105 IRNLEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       105 ~~~~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ........ .   ||+|++||||...
T Consensus        70 ~~~~~~~~-~---fd~ii~npP~~~~   91 (223)
T d2ih2a1          70 FLLWEPGE-A---FDLILGNPPYGIV   91 (223)
T ss_dssp             GGGCCCSS-C---EEEEEECCCCCCB
T ss_pred             hhcccccc-c---cceecccCccccc
Confidence            87765443 4   9999999999754

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.8e-10  Score=98.59  Aligned_cols=123  Identities=16%  Similarity=0.186  Sum_probs=84.0

Q ss_pred             CccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----CC---------------CeEEEEeC
Q 027945           19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GA---------------DQVIAIDI   79 (216)
Q Consensus        19 ~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~~---------------~~v~~~D~   79 (216)
                      .....++|.||.+++..|+..+    .+.++.+|+|++||+|.+.+.+.++    ..               ..++|+|+
T Consensus       139 ~~~~~GqfyTP~~Iv~~mv~ll----~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~  214 (524)
T d2ar0a1         139 TKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL  214 (524)
T ss_dssp             ------CCCCCHHHHHHHHHHH----CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEES
T ss_pred             hccccchhccccchhHhhhhcc----cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhcc
Confidence            3455689999999998877654    3456779999999999998877652    11               15899999


Q ss_pred             CHHHHHHHHHHHHhcCCC------eEEEEcccccccccccCCCcccEEEEcCCCCCCC------------CCCCHHHHHH
Q 027945           80 DSDSLELASENAADLELD------IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRK------------KGVDMDFLSM  141 (216)
Q Consensus        80 ~~~~~~~a~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~------------~~~~~~~l~~  141 (216)
                      ++.++..|+.|+-..+..      ..+...+.......  ...+||+|++||||+...            ......|+..
T Consensus       215 ~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~--~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~  292 (524)
T d2ar0a1         215 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH  292 (524)
T ss_dssp             CHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcccccccccchhhhhhhhhhccc--ccccceeEEecCCccccccccchhhhccccccccHHHHHH
Confidence            999999999999877652      23344444432211  123499999999997652            1224568888


Q ss_pred             HHhhcC
Q 027945          142 ALKVAS  147 (216)
Q Consensus       142 ~~~~~~  147 (216)
                      +++.+.
T Consensus       293 ~l~~Lk  298 (524)
T d2ar0a1         293 IIETLH  298 (524)
T ss_dssp             HHHHEE
T ss_pred             HHHhcc
Confidence            888765

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=2.6e-10  Score=85.00  Aligned_cols=94  Identities=20%  Similarity=0.314  Sum_probs=75.0

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc--
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV--  112 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--  112 (216)
                      |+.+++..+.+.++.++||++||+|..+..+++. +..+|+|+|.|+.+++.|+.+++..+.++.++++++.++....  
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            4444555556678899999999999999999875 5669999999999999999999988778999999987754321  


Q ss_pred             cCCCcccEEEEcCCCCC
Q 027945          113 CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       113 ~~~~~fD~v~~npp~~~  129 (216)
                      ...++||.|++|..+..
T Consensus        91 ~~~~~vdgIl~DlGvSs  107 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVST  107 (192)
T ss_dssp             TTCSCEEEEEEECSCCH
T ss_pred             cCCCCcceeeeccchhH
Confidence            12245999999987643

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=3.7e-10  Score=86.18  Aligned_cols=95  Identities=16%  Similarity=0.180  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc----C---CCeEEEEeCCHHHHHHHHHHHHhcC-----
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G---ADQVIAIDIDSDSLELASENAADLE-----   95 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~----~---~~~v~~~D~~~~~~~~a~~~~~~~~-----   95 (216)
                      +.|.+.+.+++.+..  ...++.+|||+|||+|..+..+++.    |   ..+|+++|+++.+++.|++|+...+     
T Consensus        62 s~P~~~a~~l~~L~~--~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~  139 (223)
T d1r18a_          62 SAPHMHAFALEYLRD--HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD  139 (223)
T ss_dssp             CCHHHHHHHHHHTTT--TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhHHHHHHHHhh--ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC
Confidence            346677777765532  2357889999999999999888864    2   2489999999999999999876532     


Q ss_pred             C-CeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           96 L-DIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        96 ~-~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      . ++.+.++|..+.......   ||.|+++...
T Consensus       140 ~~nv~~~~~d~~~~~~~~~~---fD~Iiv~~a~  169 (223)
T d1r18a_         140 SGQLLIVEGDGRKGYPPNAP---YNAIHVGAAA  169 (223)
T ss_dssp             HTSEEEEESCGGGCCGGGCS---EEEEEECSCB
T ss_pred             ccEEEEEecccccccccccc---eeeEEEEeec
Confidence            2 799999999886665545   9999997664

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.09  E-value=5e-10  Score=87.24  Aligned_cols=95  Identities=18%  Similarity=0.143  Sum_probs=76.8

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      ....+|||+|||+|..+..+++. +..+++++|+ +.+++.++.++...+.  +++++.+|..+..+.  .   +|+|++
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~--~---~D~v~~  153 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV--T---ADVVLL  153 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC--C---EEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccc--c---chhhhc
Confidence            45579999999999999999976 4569999998 7899999999988876  699999998864322  3   999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          124 NPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       124 npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .-.+|...+......++++.+.++
T Consensus       154 ~~vLh~~~d~~~~~lL~~i~~~Lk  177 (256)
T d1qzza2         154 SFVLLNWSDEDALTILRGCVRALE  177 (256)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred             cccccccCcHHHHHHHHHHHhhcC
Confidence            878776654445677888888765

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=2e-10  Score=89.11  Aligned_cols=97  Identities=14%  Similarity=0.174  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      ........++..+    ...++..|||+|||+|.++..+++.+ .+|+++|+|+.+++..+......+ +++++++|+.+
T Consensus         5 ~d~~~~~~Iv~~~----~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~-~~~ii~~D~l~   78 (252)
T d1qyra_           5 NDQFVIDSIVSAI----NPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMT   78 (252)
T ss_dssp             CCHHHHHHHHHHH----CCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGG-GEEEECSCGGG
T ss_pred             CCHHHHHHHHHhc----CCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhcc-chhHHhhhhhh
Confidence            3444555554444    44578899999999999999999865 599999999999999887543322 79999999998


Q ss_pred             cccccc--CCCcccEEEEcCCCCCC
Q 027945          108 LEWRVC--SVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       108 ~~~~~~--~~~~fD~v~~npp~~~~  130 (216)
                      +....-  ..++.-.|++|.||+-.
T Consensus        79 ~~~~~~~~~~~~~~~vvgNlPY~Is  103 (252)
T d1qyra_          79 FNFGELAEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             CCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred             hcccccccccCCCeEEEecchHHHH
Confidence            765431  00113489999999866

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.7e-09  Score=80.25  Aligned_cols=117  Identities=16%  Similarity=0.174  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      ....+|..+...   .+.++|||+|||+|.-++.+++. + .++++++|++++..+.|+.+++..|.  +++++.+|+.+
T Consensus        46 ~~g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e  122 (219)
T d2avda1          46 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  122 (219)
T ss_dssp             HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence            345555555543   36679999999999999999974 2 46999999999999999999999988  69999999988


Q ss_pred             ccccc---cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945          108 LEWRV---CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus       108 ~~~~~---~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      .....   ...++||+|+.|--     +..+...+..+.+..+ +++.++.+.
T Consensus       123 ~l~~~~~~~~~~~fD~ifiD~d-----k~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         123 TLDELLAAGEAGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             HHHHHHHTTCTTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cchhhhhhcccCCccEEEEeCC-----HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            54322   12345999999853     4566777888887776 455555443

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=99.01  E-value=7.9e-10  Score=85.20  Aligned_cols=104  Identities=16%  Similarity=0.123  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCC-----------------------------------
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGAD-----------------------------------   72 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~-----------------------------------   72 (216)
                      -+..+++.+|...+.......+..++|+.||||.+.++.+.....                                   
T Consensus        30 ~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~  109 (249)
T d1o9ga_          30 FPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTAREL  109 (249)
T ss_dssp             CCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhc
Confidence            356789999998886544455568999999999999988863210                                   


Q ss_pred             ------eEEEEeCCHHHHHHH---HHHHHhcCC--CeEEEEcccccccccc--cCCCcccEEEEcCCCCCCC
Q 027945           73 ------QVIAIDIDSDSLELA---SENAADLEL--DIDFVQCDIRNLEWRV--CSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        73 ------~v~~~D~~~~~~~~a---~~~~~~~~~--~~~~~~~d~~~~~~~~--~~~~~fD~v~~npp~~~~~  131 (216)
                            +++|.|+++.+++.|   +.|+...|+  .+.+.+.|+++.....  ......++||+||||+.+-
T Consensus       110 ~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl  181 (249)
T d1o9ga_         110 ERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERT  181 (249)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSS
T ss_pred             cccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccc
Confidence                  457889999999888   468888887  5899999987754321  1112379999999999883

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=9.3e-10  Score=83.44  Aligned_cols=93  Identities=13%  Similarity=0.244  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI  105 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~  105 (216)
                      ....-.+|..++..   .++++|||+|||+|..++.+++.  ..++++++|+++.+++.|+.+++..|+  +++++.+|+
T Consensus        41 ~~~~G~lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~  117 (214)
T d2cl5a1          41 GDAKGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS  117 (214)
T ss_dssp             HHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             CHHHHHHHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence            34555566666654   26679999999999999999974  246999999999999999999999998  699999999


Q ss_pred             ccccccc---cCCCcccEEEEcC
Q 027945          106 RNLEWRV---CSVGHVDTVVMNP  125 (216)
Q Consensus       106 ~~~~~~~---~~~~~fD~v~~np  125 (216)
                      .+.....   ...++||+|+.|-
T Consensus       118 ~e~l~~l~~~~~~~~~D~ifiD~  140 (214)
T d2cl5a1         118 QDLIPQLKKKYDVDTLDMVFLDH  140 (214)
T ss_dssp             HHHGGGHHHHSCCCCEEEEEECS
T ss_pred             cccccchhhcccccccceeeecc
Confidence            8864332   1223599999984

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=1.8e-09  Score=88.97  Aligned_cols=120  Identities=15%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcC-------C---
Q 027945           28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE-------L---   96 (216)
Q Consensus        28 t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-------~---   96 (216)
                      +.+.+...++..    +...++.++||+|||+|.+++.+|.. ++++|+|+|+++.+++.|+.+++..+       .   
T Consensus       200 l~~~~i~~Il~~----l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~  275 (406)
T d1u2za_         200 LLPNFLSDVYQQ----CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN  275 (406)
T ss_dssp             BCHHHHHHHHHH----TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred             CCHHHHHHHHHH----hCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence            345565555544    35568899999999999999999965 77799999999999999999887532       1   


Q ss_pred             CeEE-EEcccccccccccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEe
Q 027945           97 DIDF-VQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLH  154 (216)
Q Consensus        97 ~~~~-~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  154 (216)
                      ...+ ..++..+....+.....+|+|++|--.+.   ......+.++.+.++ |..+++.
T Consensus       276 ~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~---~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         276 NVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             CEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cceeeeeechhhccccccccccceEEEEecccCc---hHHHHHHHHHHHhcCCCcEEEEe
Confidence            2333 34555443322211112789998743221   233456777777765 4444443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-10  Score=90.00  Aligned_cols=50  Identities=12%  Similarity=0.073  Sum_probs=43.4

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE   95 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   95 (216)
                      ..++.+|||+|||+|..++.++..+..+|+|+|+++.+++.|++++....
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            35677999999999999888887676689999999999999999987654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=3.1e-09  Score=86.84  Aligned_cols=101  Identities=27%  Similarity=0.284  Sum_probs=78.5

Q ss_pred             CCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC----------------CeEEEEcccccccc
Q 027945           48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL----------------DIDFVQCDIRNLEW  110 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~----------------~~~~~~~d~~~~~~  110 (216)
                      ++.+|||..||||..++.++. .+..+|+++|+|+.+++.+++|++.|+.                .+.+.+.|+.....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            667999999999999997775 5777999999999999999999999865                25667777766554


Q ss_pred             cccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945          111 RVCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus       111 ~~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      ..+  ..||+|..|| |     +...++++.+++..+ +++..+..+
T Consensus       125 ~~~--~~fDvIDiDP-f-----Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERH--RYFHFIDLDP-F-----GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HST--TCEEEEEECC-S-----SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhc--CcCCcccCCC-C-----CCcHHHHHHHHHHhccCCEEEEEec
Confidence            432  2499999997 3     555789999999876 334434333

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.6e-09  Score=85.12  Aligned_cols=114  Identities=12%  Similarity=0.051  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhhcCCC-CCCEEEEecCCcchHHHHHHHc-----C--CCeEEEEeCCHHHHHHHHHHHHhcCC----CeE
Q 027945           32 IASRMLYTAENSFGDV-SNKVVADFGCGCGTLGAAATLL-----G--ADQVIAIDIDSDSLELASENAADLEL----DID   99 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~-~~~~vLD~g~G~G~~~~~l~~~-----~--~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~   99 (216)
                      +....+...+..+... +..+|||+|||+|.++..++..     +  ..+++|+|+++.+++.++++++....    ++.
T Consensus        23 ~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~  102 (280)
T d1jqea_          23 FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFA  102 (280)
T ss_dssp             HHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEE
T ss_pred             HHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccccccccc
Confidence            3333443333333332 3348999999999998877642     1  23689999999999999999865432    345


Q ss_pred             EEEccccccccc---ccCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          100 FVQCDIRNLEWR---VCSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       100 ~~~~d~~~~~~~---~~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +...++.++...   .....+||+|++.-.+++..  .....++.+.+.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~Lk  151 (280)
T d1jqea_         103 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLG  151 (280)
T ss_dssp             EECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEE
T ss_pred             chhhhhhhhcchhcccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCC
Confidence            566666543211   11223599999977777663  23567888888765

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.93  E-value=1.4e-08  Score=77.35  Aligned_cols=117  Identities=16%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEccccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN  107 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~  107 (216)
                      ....+|..+...   .+.++|||+|+++|.-++.+++. + .++++.+|.++...+.|+.+++..|.  +++++.+|+.+
T Consensus        46 ~~g~~L~~L~~~---~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          46 DEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             HHHHHHHHHHHH---HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHh---cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            344455555443   26679999999999999999964 2 46999999999999999999999988  69999999988


Q ss_pred             ccccc----cCCCcccEEEEcCCCCCCCCCCCHHHHHHHHhhcC-CcEEEEecC
Q 027945          108 LEWRV----CSVGHVDTVVMNPPFGTRKKGVDMDFLSMALKVAS-QAVYSLHKT  156 (216)
Q Consensus       108 ~~~~~----~~~~~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  156 (216)
                      .....    ...++||+|+.|-     .+..+...++.+.+..+ +++.++.+.
T Consensus       123 ~L~~l~~~~~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         123 VLDEMIKDEKNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HHHHHHHCGGGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             HHHHHHhccccCCceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence            65432    1234599999985     35667788888888776 566655444

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.89  E-value=2.3e-09  Score=82.57  Aligned_cols=82  Identities=15%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC----C------CeEEEEcccccccccccCCCccc
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE----L------DIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~------~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      .+|||..||.|..+..+++.|+ +|+++|.++......+.++++..    .      +++++++|+.++....  ..+||
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~--~~~~D  166 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQ  166 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC--SSCCS
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc--CCCCC
Confidence            4899999999999999999886 89999999998888777665431    1      6899999998876543  12499


Q ss_pred             EEEEcCCCCCCCCCC
Q 027945          120 TVVMNPPFGTRKKGV  134 (216)
Q Consensus       120 ~v~~npp~~~~~~~~  134 (216)
                      +|++||+|....+..
T Consensus       167 vIYlDPMFp~~~Ksa  181 (250)
T d2oyra1         167 VVYLDPMFPHKQKSA  181 (250)
T ss_dssp             EEEECCCCCCCCC--
T ss_pred             EEEECCCCccccccc
Confidence            999999997775543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.3e-09  Score=81.72  Aligned_cols=86  Identities=14%  Similarity=0.140  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||.|.-+..++..  +..+++++|+++..++.++.|++..|. ++.+...|...........++||.|
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence            4567889999999999988888754  456999999999999999999999998 7899999988765544333459999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++|||....
T Consensus       171 L~DaPCSg~  179 (293)
T d2b9ea1         171 LLDPSCSGS  179 (293)
T ss_dssp             EECCCCCC-
T ss_pred             eecCcccch
Confidence            999997553

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.85  E-value=2.5e-08  Score=78.15  Aligned_cols=103  Identities=15%  Similarity=0.116  Sum_probs=78.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-----------CCCeEEEEcccccccccccCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------ELDIDFVQCDIRNLEWRVCSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----------~~~~~~~~~d~~~~~~~~~~~  115 (216)
                      .++++||.+|+|.|.....+.+++..+|+++|+|+..++.|+.....+           .-+++++.+|+..+....+  
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~--  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR--  148 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC--
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC--
Confidence            466899999999999999998887779999999999999999866432           1279999999998776543  


Q ss_pred             CcccEEEEcCCCCCCCCC--CCHHHHHHHHhhcC-CcEEE
Q 027945          116 GHVDTVVMNPPFGTRKKG--VDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       116 ~~fD~v~~npp~~~~~~~--~~~~~l~~~~~~~~-~~~~~  152 (216)
                       +||+|++|++-......  -..++++.+.+.+. +++++
T Consensus       149 -~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v  187 (276)
T d1mjfa_         149 -GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYV  187 (276)
T ss_dssp             -CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEE
T ss_pred             -CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEE
Confidence             49999999875332111  23578888888776 44443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1e-08  Score=79.91  Aligned_cols=116  Identities=11%  Similarity=0.029  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhhc--CCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCC------------
Q 027945           32 IASRMLYTAENSF--GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD------------   97 (216)
Q Consensus        32 ~~~~~l~~~~~~~--~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------------   97 (216)
                      +....+..+-..+  ...++.++||+|||+|..++..+.....+|+|+|+++.+++.+++++......            
T Consensus        36 ~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~  115 (263)
T d2g72a1          36 VGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL  115 (263)
T ss_dssp             HHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence            4444444443322  45678899999999998887666545669999999999999999887643210            


Q ss_pred             -------------------eEEEEccccccccc---ccCCCcccEEEEcCCCCCCCCC--CCHHHHHHHHhhcC
Q 027945           98 -------------------IDFVQCDIRNLEWR---VCSVGHVDTVVMNPPFGTRKKG--VDMDFLSMALKVAS  147 (216)
Q Consensus        98 -------------------~~~~~~d~~~~~~~---~~~~~~fD~v~~npp~~~~~~~--~~~~~l~~~~~~~~  147 (216)
                                         ..+...|+......   ....++||+|++.-..++....  .....++++.+.++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~Lk  189 (263)
T d2g72a1         116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR  189 (263)
T ss_dssp             HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE
T ss_pred             hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcC
Confidence                               13345555442211   1122359999986554443221  34456777777766

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.7e-07  Score=70.14  Aligned_cols=114  Identities=16%  Similarity=0.231  Sum_probs=78.8

Q ss_pred             hhHHHHHhccCCCCCCccccccCCCCHH-HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCH
Q 027945            4 KQLESVLGDLEQFSNPKVELEQYPTGPH-IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDS   81 (216)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~   81 (216)
                      ++|+.+...+..|.+.. ..-...+... +..++++.+... ...++.+++|+|+|.|.-++.+|-. +..+++.+|.+.
T Consensus        22 ~~L~~y~~ll~~~N~~~-NLts~~~~~~~~~rHi~DSl~~~-~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~   99 (207)
T d1jsxa_          22 NQLIAYVNMLHKWNKAY-NLTSVRDPNEMLVRHILDSIVVA-PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLG   99 (207)
T ss_dssp             HHHHHHHHHHHHHC-------------CHHHHHHHHHHHHG-GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCH
T ss_pred             HHHHHHHHHHHHhCCce-eeEECCCHHHHHHHHhcchHhhh-hhhcCCceeeeeccCCceeeehhhhcccceEEEEecch
Confidence            34455555555552221 1112223333 456676666543 4456679999999999999999954 556999999999


Q ss_pred             HHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEEEE
Q 027945           82 DSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        82 ~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .-+...+.-....++ ++++++..+.+..... .   ||+|++
T Consensus       100 KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~-~---fD~V~s  138 (207)
T d1jsxa_         100 KRVRFLRQVQHELKLENIEPVQSRVEEFPSEP-P---FDGVIS  138 (207)
T ss_dssp             HHHHHHHHHHHHTTCSSEEEEECCTTTSCCCS-C---EEEEEC
T ss_pred             HHHHHHHHHHHHcCCcceeeeccchhhhcccc-c---cceehh
Confidence            999999999999888 8999999999865433 4   999998

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=7.9e-08  Score=76.51  Aligned_cols=104  Identities=18%  Similarity=0.193  Sum_probs=78.1

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhc--C----CCeEEEEcccccccccccCCCccc
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL--E----LDIDFVQCDIRNLEWRVCSVGHVD  119 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~--~----~~~~~~~~d~~~~~~~~~~~~~fD  119 (216)
                      ...++||.+|.|.|.....+.+.. ..+|+++|+|+..++.|++.+...  +    .+++++.+|+.++....  +.+||
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~--~~~yD  153 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERYD  153 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc--CCccc
Confidence            466899999999999999998874 669999999999999999987432  1    27999999999987553  23599


Q ss_pred             EEEEcCC--CCCCCC---CCCHHHHHHHHhhcC-CcEEE
Q 027945          120 TVVMNPP--FGTRKK---GVDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       120 ~v~~npp--~~~~~~---~~~~~~l~~~~~~~~-~~~~~  152 (216)
                      +|++|++  +.....   --..++++.+.+.++ +++++
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv  192 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMG  192 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEE
Confidence            9998864  332211   124578888888776 44443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.71  E-value=2.6e-07  Score=72.08  Aligned_cols=119  Identities=12%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDI  105 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~  105 (216)
                      ...+++...... .....++||-+|.|.|.....+.++ +..+++++|+|+..++.|+.....+     .-+++++.+|+
T Consensus        60 ~Yhe~l~h~~l~-~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~  138 (274)
T d1iy9a_          60 VYHEMVAHVPLF-THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG  138 (274)
T ss_dssp             HHHHHHHHHHHH-HSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred             hchhhhccchhh-ccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH
Confidence            334444443322 2345679999999999999999986 5679999999999999999987542     12799999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCCCCC--CCHHHHHHHHhhcC-CcEEEE
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTRKKG--VDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~~~~--~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      ..+....  +.+||+|+.|++-......  -..++.+.+.+.+. +++++.
T Consensus       139 ~~~l~~~--~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~  187 (274)
T d1iy9a_         139 FMHIAKS--ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (274)
T ss_dssp             HHHHHTC--CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHhhc--CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence            9877653  2369999999764322212  14578888887776 455443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.68  E-value=9.1e-08  Score=75.44  Aligned_cols=119  Identities=14%  Similarity=0.115  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDI  105 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~  105 (216)
                      ...+++...... .....++||-+|.|.|.....++++. ..+|+++|+|+..++.|++....+     .-+++++.+|+
T Consensus        74 ~YhE~l~h~pl~-~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da  152 (295)
T d1inla_          74 MYHEMLAHVPMF-LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG  152 (295)
T ss_dssp             HHHHHHHHHHHH-HSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             hhhhhhcchhHh-hCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH
Confidence            444454443222 12456899999999999999999874 679999999999999999877543     12799999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCC--CC-CCCHHHHHHHHhhcC-CcEEEE
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTR--KK-GVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~--~~-~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      .++....  ..+||+|++|++-...  .. --..++++.+.+.+. +++++.
T Consensus       153 ~~~l~~~--~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~  202 (295)
T d1inla_         153 AEYVRKF--KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA  202 (295)
T ss_dssp             HHHGGGC--SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHhcC--CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence            9987653  3469999998754321  11 125678888888776 444443

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.64  E-value=5.7e-07  Score=71.49  Aligned_cols=83  Identities=16%  Similarity=0.238  Sum_probs=69.6

Q ss_pred             CCCCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccccccccCCCcccEE
Q 027945           45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRVCSVGHVDTV  121 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~v  121 (216)
                      ...++.+|||+|||.|.=+..++..  +.+.++++|+++..++.++.+++..|. ++.+...|..........   ||.|
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~---fD~I  189 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE---FDKI  189 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC---EEEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccc---ccEE
Confidence            4568899999999999988888754  355899999999999999999999988 788888888776554434   9999


Q ss_pred             EEcCCCCCC
Q 027945          122 VMNPPFGTR  130 (216)
Q Consensus       122 ~~npp~~~~  130 (216)
                      ++|+|-...
T Consensus       190 LvDaPCSg~  198 (313)
T d1ixka_         190 LLDAPCTGS  198 (313)
T ss_dssp             EEECCTTST
T ss_pred             EEccccccC
Confidence            999997654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=1.9e-07  Score=73.50  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEccccc
Q 027945           34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN  107 (216)
Q Consensus        34 ~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~  107 (216)
                      .+++...... .....++||-+|.|.|.....+.++ +..+++++|+|+..++.+++....+     +.+++++.+|+.+
T Consensus        67 he~l~h~~~~-~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~  145 (290)
T d1xj5a_          67 QEMITHLPLC-SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA  145 (290)
T ss_dssp             HHHHHHHHHT-TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH
T ss_pred             HHHHhhHHHh-hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHH
Confidence            4444444332 2345679999999999999999987 4569999999999999999976432     2279999999998


Q ss_pred             ccccccCCCcccEEEEcCCCCCC--CCCCCHHHHHHHHhhcC-CcEEEE
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTR--KKGVDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~--~~~~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      +.... .+.+||+|+.|.+=...  ..--..++++.+.+.+. +++++.
T Consensus       146 ~l~~~-~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~  193 (290)
T d1xj5a_         146 FLKNA-AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT  193 (290)
T ss_dssp             HHHTS-CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             HHhhc-cccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence            77543 23359999998763211  11124578888888776 344443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=2.3e-06  Score=65.06  Aligned_cols=148  Identities=12%  Similarity=0.204  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhh-cCC-CCCCEEEEecCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEccccc
Q 027945           32 IASRMLYTAENS-FGD-VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN  107 (216)
Q Consensus        32 ~~~~~l~~~~~~-~~~-~~~~~vLD~g~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~  107 (216)
                      +..++++.+... +.+ ....+++|+|+|.|.-++.++- .+..+++.+|.+..-+...+.-.+..++ ++.+++..+++
T Consensus        52 ~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~  131 (239)
T d1xdza_          52 YLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAET  131 (239)
T ss_dssp             HHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHH
T ss_pred             HHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhh
Confidence            455566665322 111 2457999999999999999995 5667999999999999999998888888 78999999987


Q ss_pred             ccccccCCCcccEEEEcCCCCCCCCCCCHH-HHHHHHhhcC-CcEEEEecCcc-HHHHHHHHhhhcCCccceEEEEEeec
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTRKKGVDMD-FLSMALKVAS-QAVYSLHKTST-REHVKKAALRDFNASSAEVLCELRYD  184 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~~~~~~~~-~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~  184 (216)
                      +.......++||+|++       +.-.... .+.-+..... +..+++.+... .+.+.+.. +.+...+........|.
T Consensus       132 ~~~~~~~~~~~D~v~s-------RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~-~~~~~~~~~~~~v~~~~  203 (239)
T d1xdza_         132 FGQRKDVRESYDIVTA-------RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGK-KAITTLGGELENIHSFK  203 (239)
T ss_dssp             HTTCTTTTTCEEEEEE-------ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHH-HHHHHTTEEEEEEEEEE
T ss_pred             ccccccccccceEEEE-------hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHH-HHHHHcCCEEEEEEEEe
Confidence            6543323345999998       3333343 4444444443 45555555443 44444433 44442344444444566


Q ss_pred             CCc
Q 027945          185 VPQ  187 (216)
Q Consensus       185 ~~~  187 (216)
                      +|.
T Consensus       204 lp~  206 (239)
T d1xdza_         204 LPI  206 (239)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.5e-07  Score=72.63  Aligned_cols=118  Identities=10%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEccc
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDI  105 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~  105 (216)
                      ...+++...... .....++||-+|.|.|.....+.++ +..+++++|+|+..++.|++.+..+     .-+++++.+|+
T Consensus        63 ~Yhe~l~h~~l~-~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da  141 (285)
T d2o07a1          63 SYQEMIANLPLC-SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG  141 (285)
T ss_dssp             HHHHHHHHHHHT-TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             HHHHHhccHhhh-hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccH
Confidence            344444443322 3346689999999999999999987 4779999999999999999887542     22899999999


Q ss_pred             ccccccccCCCcccEEEEcCCCCCC-CCC-CCHHHHHHHHhhcC-CcEEE
Q 027945          106 RNLEWRVCSVGHVDTVVMNPPFGTR-KKG-VDMDFLSMALKVAS-QAVYS  152 (216)
Q Consensus       106 ~~~~~~~~~~~~fD~v~~npp~~~~-~~~-~~~~~l~~~~~~~~-~~~~~  152 (216)
                      .++....  ..+||+|++|++-... ... -..++++.+.+.+. +++++
T Consensus       142 ~~~l~~~--~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v  189 (285)
T d2o07a1         142 FEFMKQN--QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLC  189 (285)
T ss_dssp             HHHHHTC--SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEE
T ss_pred             HHHHhcC--CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEE
Confidence            9887543  2359999999753211 111 12367777777765 34443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.57  E-value=2.6e-07  Score=73.22  Aligned_cols=105  Identities=12%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCC-----CeEEEEcccccccccccCCCcccE
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL-----DIDFVQCDIRNLEWRVCSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~  120 (216)
                      ...++||-+|.|.|.....+.++. ..+|+++|+|+..++.|+..+..+..     +++++.+|+.++....  ..+||+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~--~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH--KNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC--TTCEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC--CCCCCE
Confidence            456799999999999999999874 57999999999999999998754321     7999999999887543  335999


Q ss_pred             EEEcCCCCCCC-CC-CCHHHHHHHHhhcC-CcEEEE
Q 027945          121 VVMNPPFGTRK-KG-VDMDFLSMALKVAS-QAVYSL  153 (216)
Q Consensus       121 v~~npp~~~~~-~~-~~~~~l~~~~~~~~-~~~~~~  153 (216)
                      |++|++-.... .. -..++++.+.+.+. +++++.
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~  218 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS  218 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence            99987632211 11 23467777777765 445444

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=3.8e-07  Score=72.83  Aligned_cols=94  Identities=13%  Similarity=0.111  Sum_probs=71.6

Q ss_pred             cCCCCCCcccccc-CCCCHHHHHHHHHHHHhh--cCCCCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 027945           13 LEQFSNPKVELEQ-YPTGPHIASRMLYTAENS--FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELAS   88 (216)
Q Consensus        13 ~~~~~~~~~~~~~-~~t~~~~~~~~l~~~~~~--~~~~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~   88 (216)
                      +.-..+....++| |-+.+.+...++..+...  .....+.+|||+|+|.|.++..+... ++.+|+++|+|+..++..+
T Consensus         5 ~~~l~k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~   84 (322)
T d1i4wa_           5 IKDISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLN   84 (322)
T ss_dssp             CCTTCSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHH
T ss_pred             hhhhhhhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            3344555566666 667888888888776432  12345679999999999999999976 4569999999999999998


Q ss_pred             HHHHhcCCCeEEEEcccccc
Q 027945           89 ENAADLELDIDFVQCDIRNL  108 (216)
Q Consensus        89 ~~~~~~~~~~~~~~~d~~~~  108 (216)
                      .....  .+++++++|+..+
T Consensus        85 ~~~~~--~~~~ii~~D~l~~  102 (322)
T d1i4wa_          85 AKFEG--SPLQILKRDPYDW  102 (322)
T ss_dssp             HHTTT--SSCEEECSCTTCH
T ss_pred             HhccC--CCcEEEeCchhhc
Confidence            77543  3689999998765

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=5.6e-07  Score=70.61  Aligned_cols=96  Identities=16%  Similarity=0.182  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCC-eEEEEccccc
Q 027945           30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN  107 (216)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~d~~~  107 (216)
                      +..++.+...++   ...++.+|||+|||.|.=+..++..+ ...++++|+++..++.++.+++..|.+ +.....|...
T Consensus        87 QD~sS~l~~~~L---~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~  163 (284)
T d1sqga2          87 QDASAQGCMTWL---APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  163 (284)
T ss_dssp             CCHHHHTHHHHH---CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             cccccccccccc---CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence            345555554443   45678899999999999998888653 468999999999999999999999984 4444444432


Q ss_pred             ccccccCCCcccEEEEcCCCCCC
Q 027945          108 LEWRVCSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       108 ~~~~~~~~~~fD~v~~npp~~~~  130 (216)
                      ....  ..++||.|++|+|-...
T Consensus       164 ~~~~--~~~~fd~IL~DaPCSg~  184 (284)
T d1sqga2         164 SQWC--GEQQFDRILLDAPCSAT  184 (284)
T ss_dssp             HHHH--TTCCEEEEEEECCCCCG
T ss_pred             chhc--ccccccEEEEecccccc
Confidence            2221  22349999999998664

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=6.4e-07  Score=65.61  Aligned_cols=90  Identities=19%  Similarity=0.209  Sum_probs=69.0

Q ss_pred             HHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc--c
Q 027945           36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV--C  113 (216)
Q Consensus        36 ~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~  113 (216)
                      |+.+++..+...++..++|..+|.|.-+..+...+ ++|+|+|.|+.+++.++....   -++.++++++.++....  .
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~---~~~~~~~~~f~~~~~~l~~~   81 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHL---PGLTVVQGNFRHLKRHLAAL   81 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCC---TTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccc---cceeEeehHHHHHHHHHHHc
Confidence            45555555567789999999999999999998865 499999999999999986522   26899999988754322  1


Q ss_pred             CCCcccEEEEcCCCCC
Q 027945          114 SVGHVDTVVMNPPFGT  129 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~  129 (216)
                      ..+++|.|++|..+..
T Consensus        82 ~~~~vdgIl~DLGvSs   97 (182)
T d1wg8a2          82 GVERVDGILADLGVSS   97 (182)
T ss_dssp             TCSCEEEEEEECSCCH
T ss_pred             CCCccCEEEEEccCCH
Confidence            2245999999987644

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.02  E-value=2.7e-05  Score=59.36  Aligned_cols=97  Identities=18%  Similarity=0.112  Sum_probs=67.8

Q ss_pred             HHHhhcCC-CCCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCC
Q 027945           39 TAENSFGD-VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVG  116 (216)
Q Consensus        39 ~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  116 (216)
                      .++..+.. ....+|||+|||+|.++..++++ +..+++..|+ |..++.+..     ..+++++.+|+++..+   .  
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~-----~~ri~~~~gd~~~~~p---~--  139 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----LSGIEHVGGDMFASVP---Q--  139 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTTCCC---C--
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCC-----CCCeEEecCCcccccc---c--
Confidence            33444443 34479999999999999999965 5669999998 545432111     1179999999976432   3  


Q ss_pred             cccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          117 HVDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       117 ~fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                       .|++++.-..|.-.+..-...++++.+.++
T Consensus       140 -~D~~~l~~vLh~~~de~~~~iL~~~~~aL~  169 (244)
T d1fp1d2         140 -GDAMILKAVCHNWSDEKCIEFLSNCHKALS  169 (244)
T ss_dssp             -EEEEEEESSGGGSCHHHHHHHHHHHHHHEE
T ss_pred             -ceEEEEehhhhhCCHHHHHHHHHHHHHHcC
Confidence             699998777776655556677888877765

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.90  E-value=7.3e-05  Score=54.77  Aligned_cols=42  Identities=26%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             CCCEEEEecCCcchHH----HHHHHc-C----CCeEEEEeCCHHHHHHHHH
Q 027945           48 SNKVVADFGCGCGTLG----AAATLL-G----ADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~----~~l~~~-~----~~~v~~~D~~~~~~~~a~~   89 (216)
                      +..+|++.|||+|--.    +.+... .    .-+++|+|+|+.+++.|+.
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            4469999999999643    223321 1    1279999999999999974

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.87  E-value=7e-05  Score=59.03  Aligned_cols=102  Identities=16%  Similarity=0.132  Sum_probs=72.3

Q ss_pred             CCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ..+.++||++||.|.++..+.+.|..-+.++|+++.+++..+.|...      ..++|+.+.....-.  .+|++++.||
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~------~~~~Di~~~~~~~~~--~~Dll~ggpP   80 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE------KPEGDITQVNEKTIP--DHDILCAGFP   80 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC------CCBSCGGGSCGGGSC--CCSEEEEECC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC------CCcCchhcCchhhcc--eeeeeecccc
Confidence            46689999999999999999988886778899999999999998743      235788776554321  3999999999


Q ss_pred             CCCCC-----------CCCCHHHHHHHHhhcCCcEEEEecC
Q 027945          127 FGTRK-----------KGVDMDFLSMALKVASQAVYSLHKT  156 (216)
Q Consensus       127 ~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~  156 (216)
                      .....           .......+-++++..++.++++=|.
T Consensus        81 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV  121 (327)
T d2c7pa1          81 CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENV  121 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             cchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccc
Confidence            75541           1112223334445555667766444

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.87  E-value=2.8e-05  Score=60.98  Aligned_cols=74  Identities=16%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             CEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCC
Q 027945           50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus        50 ~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~  129 (216)
                      .+|+|++||.|.+++-+.+.|...+.++|+++.+.+..+.|..     ..++.+|+.+.....-.  +.|++++-||...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-----~~~~~~Di~~~~~~~~~--~~dll~~g~PCq~   73 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISSDEFP--KCDGIIGGPPCQS   73 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-----SEEEESCTTTSCGGGSC--CCSEEEECCCCTT
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----CCCccCChhhCCHhHcc--cccEEeecccccc
Confidence            3799999999999988888788677899999999998888863     46788999887654321  3999999999865


Q ss_pred             C
Q 027945          130 R  130 (216)
Q Consensus       130 ~  130 (216)
                      .
T Consensus        74 f   74 (324)
T d1dcta_          74 W   74 (324)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.86  E-value=2.2e-05  Score=59.62  Aligned_cols=46  Identities=26%  Similarity=0.304  Sum_probs=41.8

Q ss_pred             CCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Q 027945           46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA   92 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~   92 (216)
                      ..++..|||++||+|..++++.+.+. +.+|+|++++.++.|++++.
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            35778999999999999999999775 99999999999999999875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=5.3e-05  Score=54.99  Aligned_cols=87  Identities=21%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhhcCC-CCCCEEEEecCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcCC-CeEEEEcccccc
Q 027945           33 ASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL  108 (216)
Q Consensus        33 ~~~~l~~~~~~~~~-~~~~~vLD~g~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~  108 (216)
                      +...|.++...+.. .++.+|||+||+.|..+..+.+.  ....++++|+.+.           ... ++.++++|....
T Consensus         6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~   74 (180)
T d1ej0a_           6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDE   74 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSH
T ss_pred             HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccc
Confidence            45566666666554 46789999999999999988864  3568999998761           122 688999998764


Q ss_pred             cccc-----cCCCcccEEEEcCCCCCC
Q 027945          109 EWRV-----CSVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       109 ~~~~-----~~~~~fD~v~~npp~~~~  130 (216)
                      ....     ....++|+|++|......
T Consensus        75 ~~~~~~~~~~~~~~~DlVlSD~ap~~s  101 (180)
T d1ej0a_          75 LVMKALLERVGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             hhhhhhhhhccCcceeEEEecccchhc
Confidence            3211     123469999999876554

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.77  E-value=2.2e-05  Score=61.48  Aligned_cols=60  Identities=13%  Similarity=0.143  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      |..+...++...     ..++..|||++||+|..++++...|. +.+|+|++++.++.|+.++..+
T Consensus       236 P~~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         236 PAKLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CTHHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred             chHHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence            455666666443     34778999999999999999999776 9999999999999999887654

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.73  E-value=6.8e-05  Score=57.05  Aligned_cols=87  Identities=16%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             CCCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      ...+|||+|||+|..+..++++ +..+++..|+ |..++.+..     ..+++++.+|+++..+   .   +|++++.-.
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~-----~~rv~~~~gD~f~~~p---~---aD~~~l~~v  147 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFTSIP---N---ADAVLLKYI  147 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTTCCC---C---CSEEEEESC
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcc-----cCceEEEecCcccCCC---C---CcEEEEEee
Confidence            3468999999999999999965 5669999999 555443211     1179999999987432   3   899998777


Q ss_pred             CCCCCCCCCHHHHHHHHhhc
Q 027945          127 FGTRKKGVDMDFLSMALKVA  146 (216)
Q Consensus       127 ~~~~~~~~~~~~l~~~~~~~  146 (216)
                      +|.-.+......|+++.+..
T Consensus       148 LHdw~d~~~~~iL~~~~~al  167 (244)
T d1fp2a2         148 LHNWTDKDCLRILKKCKEAV  167 (244)
T ss_dssp             GGGSCHHHHHHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHc
Confidence            77665555556666666554

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.71  E-value=4.4e-05  Score=58.64  Aligned_cols=60  Identities=20%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc
Q 027945           29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL   94 (216)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~   94 (216)
                      |..+...++...     ..++..|||++||+|..++++...|. +.+|+|+++..++.|++++...
T Consensus       193 P~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         193 PAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            344455444432     34788999999999999999999876 9999999999999999998764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.4e-05  Score=61.08  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=56.1

Q ss_pred             CCEEEEecCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCC
Q 027945           49 NKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp  126 (216)
                      +.+|+|++||.|.++.-+.+.|.  .-+.++|+++.+++..+.|..    ...++.+|+.+.....-.....|++++.||
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~~~~~~~~~Dll~ggpP   77 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence            35899999999999888877664  237799999999999888864    356677888776543311113899999999


Q ss_pred             CCCC
Q 027945          127 FGTR  130 (216)
Q Consensus       127 ~~~~  130 (216)
                      ....
T Consensus        78 Cq~f   81 (343)
T d1g55a_          78 CQPF   81 (343)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7554

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.56  E-value=0.00046  Score=52.20  Aligned_cols=96  Identities=17%  Similarity=0.108  Sum_probs=63.0

Q ss_pred             HHhhcCCCC-CCEEEEecCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCc
Q 027945           40 AENSFGDVS-NKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGH  117 (216)
Q Consensus        40 ~~~~~~~~~-~~~vLD~g~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  117 (216)
                      ++..+...+ ..+|||+|||+|..++.+++. +..++++.|+.+ .++.+..     ..+++++.+|+++..+ .     
T Consensus        72 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~-----~~r~~~~~~d~~~~~P-~-----  139 (243)
T d1kyza2          72 ILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPS-----YPGVEHVGGDMFVSIP-K-----  139 (243)
T ss_dssp             HHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCC-----CTTEEEEECCTTTCCC-C-----
T ss_pred             HHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhccc-----CCceEEecccccccCC-C-----
Confidence            333333333 479999999999999999975 566999999954 3322111     1179999999976432 2     


Q ss_pred             ccEEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          118 VDTVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       118 fD~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      .|.+++.--.+.-........++++.+..+
T Consensus       140 ad~~~l~~vlh~~~d~~~~~iL~~~~~al~  169 (243)
T d1kyza2         140 ADAVFMKWICHDWSDEHCLKFLKNCYEALP  169 (243)
T ss_dssp             CSCEECSSSSTTSCHHHHHHHHHHHHHHCC
T ss_pred             cceEEEEEEeecCCHHHHHHHHHHHHHhcC
Confidence            465665445554444455567777777765

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.39  E-value=7.3e-05  Score=56.40  Aligned_cols=85  Identities=15%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             HHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHH----c-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc
Q 027945           35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL----L-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE  109 (216)
Q Consensus        35 ~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~----~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  109 (216)
                      .++..++..+   ++++|||+|++.|.-++.++.    . ..++++++|+++.........    ..+++++++|.....
T Consensus        70 ~~~~eli~~~---KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~----~~~I~~i~gDs~~~~  142 (232)
T d2bm8a1          70 AVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD----MENITLHQGDCSDLT  142 (232)
T ss_dssp             HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG----CTTEEEEECCSSCSG
T ss_pred             HHHHHHHHHh---CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc----ccceeeeecccccHH
Confidence            3445555543   567999999999987766653    2 256999999987543322211    127999999987643


Q ss_pred             ccc-cCCCcccEEEEcCC
Q 027945          110 WRV-CSVGHVDTVVMNPP  126 (216)
Q Consensus       110 ~~~-~~~~~fD~v~~npp  126 (216)
                      ... -.+..+|+|+.|-.
T Consensus       143 ~~~~l~~~~~dlIfID~~  160 (232)
T d2bm8a1         143 TFEHLREMAHPLIFIDNA  160 (232)
T ss_dssp             GGGGGSSSCSSEEEEESS
T ss_pred             HHHHHHhcCCCEEEEcCC
Confidence            322 12234899998854

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.76  E-value=0.00099  Score=50.18  Aligned_cols=48  Identities=21%  Similarity=0.120  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCEEEEecCCcchHHHHHHHcC-CCeEEEEeC
Q 027945           32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDI   79 (216)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~vLD~g~G~G~~~~~l~~~~-~~~v~~~D~   79 (216)
                      -.+..|.++...+...+..+|+|+|||.|.-+..++... ...|.|+++
T Consensus        50 R~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          50 RGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             THHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             hHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            455667777776555667799999999999999999753 347888887

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.44  E-value=0.024  Score=42.39  Aligned_cols=84  Identities=19%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ...++++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+...++..+.++..+.+|+.+...-.       ...
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4578889999987762   3444445565 9999999999999988888877778899999987732111       122


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ++.|.++.|......
T Consensus        86 g~iDilvnnag~~~~  100 (251)
T d2c07a1          86 KNVDILVNNAGITRD  100 (251)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCceeeeeccccccc
Confidence            469999998776554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.023  Score=42.46  Aligned_cols=85  Identities=21%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945           45 GDVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      +...|+++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.....+...+.++..+.+|+.+...-.       ..
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            34688999999999884   6777777776 9999999999999988888877778889999988743211       13


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .+..|+++.|-.....
T Consensus        82 ~g~idilinnag~~~~   97 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYT   97 (244)
T ss_dssp             TCCCSEEEECCCCCCC
T ss_pred             cCCCceeEeecccccc
Confidence            3459999988777655

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0062  Score=42.81  Aligned_cols=47  Identities=28%  Similarity=0.259  Sum_probs=37.5

Q ss_pred             hcCCCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           43 SFGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        43 ~~~~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      .....++.+||-+|+| .|.+++.+++. |+ +|+++|.+++.++.+++.
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc
Confidence            3356688999999998 66677777754 65 899999999999888765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.22  E-value=0.027  Score=42.37  Aligned_cols=81  Identities=19%  Similarity=0.291  Sum_probs=61.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+...++..+.++..+.+|+.+...-.       ...+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            478899999988774   5566667676 8999999999999998888887778889999987632110       1224


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.+|.|..+.
T Consensus        82 ~iDilVnnaG~~   93 (260)
T d1zema1          82 KIDFLFNNAGYQ   93 (260)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCeehhhhccc
Confidence            599999876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.13  E-value=0.0089  Score=43.21  Aligned_cols=46  Identities=33%  Similarity=0.334  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|||. |..+..+++ .++.+|+++|.++..++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            556889999999997 556677675 4777999999999999988776

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.05  E-value=0.082  Score=39.55  Aligned_cols=83  Identities=18%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccccc--------ccCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR--------VCSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~  115 (216)
                      .+++++|-.|+..|.   ++..+++.|. +|+.++.++..++.+.+.++..+.++.++.+|+.+...-        ....
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD   82 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            578999999998773   4556666676 999999999999888888888777888889998774321        1122


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      +..|+++.|......
T Consensus        83 g~idilinnag~~~~   97 (258)
T d1ae1a_          83 GKLNILVNNAGVVIH   97 (258)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCcEEEecccccccc
Confidence            458999987766554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.063  Score=40.17  Aligned_cols=83  Identities=16%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC--CeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-------~~  114 (216)
                      .+++++|-.|+++|.   +...+++.|. +|+.++.++..++.+.+.++..+.  ++.++++|+.+...-.       ..
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            478899999998874   4566666676 999999999999988887777654  5778899987632111       11


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .+..|++|.|..+...
T Consensus        87 ~g~iD~lVnnAg~~~~  102 (257)
T d1xg5a_          87 HSGVDICINNAGLARP  102 (257)
T ss_dssp             HCCCSEEEECCCCCCC
T ss_pred             cCCCCEEEecccccCC
Confidence            2459999988776544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.041  Score=41.19  Aligned_cols=83  Identities=24%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+.+.++..+.++.++++|+.+...-.       ...+
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            478899988877763   3455556566 9999999999999888888877778888999987632111       1124


Q ss_pred             cccEEEEcCCCCCC
Q 027945          117 HVDTVVMNPPFGTR  130 (216)
Q Consensus       117 ~fD~v~~npp~~~~  130 (216)
                      +.|+++.|......
T Consensus        88 ~iDilvnnAG~~~~  101 (255)
T d1fmca_          88 KVDILVNNAGGGGP  101 (255)
T ss_dssp             SCCEEEECCCCCCC
T ss_pred             CCCEeeeCCcCCCC
Confidence            59999998765443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.71  E-value=0.092  Score=39.26  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC-
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS-  114 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~-  114 (216)
                      ..+++++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+...+.++.++.+|+.+...-.       .. 
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            3578999999988774   4566666676 8999999999999888888877777888899987632110       11 


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .++.|+++.|......
T Consensus        84 ~~~idilvnnAG~~~~   99 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIY   99 (259)
T ss_dssp             TTCCCEEEECCCCCCC
T ss_pred             CCCceEEEECCceecc
Confidence            1259999998765443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.58  E-value=0.092  Score=39.14  Aligned_cols=80  Identities=19%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             CCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcc
Q 027945           49 NKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHV  118 (216)
Q Consensus        49 ~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~f  118 (216)
                      ++++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.++..+.++.++.+|+.+...-.       ...++.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            5677888877664   4556666676 8999999999999988888887778899999987743111       123569


Q ss_pred             cEEEEcCCCCC
Q 027945          119 DTVVMNPPFGT  129 (216)
Q Consensus       119 D~v~~npp~~~  129 (216)
                      |.+|.|-....
T Consensus        81 DilVnnAG~~~   91 (257)
T d2rhca1          81 DVLVNNAGRPG   91 (257)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEecccccC
Confidence            99998765543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.54  E-value=0.088  Score=39.38  Aligned_cols=84  Identities=15%  Similarity=0.062  Sum_probs=60.8

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC-
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS-  114 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~-  114 (216)
                      ..+++++|-.|+++|.   .+..+++.|. +|+.+|.+++.++.+...+...+.++..+.+|+.+...-.       .. 
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            3578999999988874   5566666676 9999999999998888888776668889999987532110       11 


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .++.|+++.|......
T Consensus        84 ~g~idilvnnAG~~~~   99 (259)
T d1xq1a_          84 GGKLDILINNLGAIRS   99 (259)
T ss_dssp             TTCCSEEEEECCC---
T ss_pred             CCCcccccccccccCC
Confidence            2459999998766443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.25  E-value=0.025  Score=39.88  Aligned_cols=46  Identities=26%  Similarity=0.316  Sum_probs=37.8

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|||. |..++.+++. |+.+|+++|.++..++.+++.
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            456788899999985 7778888875 666899999999999998764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.21  E-value=0.13  Score=38.32  Aligned_cols=79  Identities=16%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             EEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCcccE
Q 027945           51 VVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVDT  120 (216)
Q Consensus        51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD~  120 (216)
                      .+|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+...++..+.++.++.+|+.+...-.       ...++.|.
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            45777877663   4556666676 9999999999999888888877778888999987732111       12356999


Q ss_pred             EEEcCCCCCC
Q 027945          121 VVMNPPFGTR  130 (216)
Q Consensus       121 v~~npp~~~~  130 (216)
                      +|.|--+...
T Consensus        82 lVnnAG~~~~   91 (255)
T d1gega_          82 IVNNAGVAPS   91 (255)
T ss_dssp             EEECCCCCCC
T ss_pred             EEeccccccc
Confidence            9987655443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.15  E-value=0.039  Score=41.80  Aligned_cols=79  Identities=24%  Similarity=0.247  Sum_probs=58.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~-------~  113 (216)
                      .+++++|-.|+++|.   .+..+++.|. +|+.+|.+++.++.+...+...+.   ++..+.+|+.+...-.       .
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            368899999988874   4566666676 999999999999988888877654   5788999987743111       1


Q ss_pred             CCCcccEEEEcCC
Q 027945          114 SVGHVDTVVMNPP  126 (216)
Q Consensus       114 ~~~~fD~v~~npp  126 (216)
                      ..++.|.++.|.-
T Consensus        81 ~~G~iDilVnnAG   93 (274)
T d1xhla_          81 KFGKIDILVNNAG   93 (274)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCceEEEeecc
Confidence            2245999998854

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.02  Score=40.58  Aligned_cols=45  Identities=33%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             CCCCCEEEEecCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           46 DVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        46 ~~~~~~vLD~g~G-~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ..++.+||-+||| .|.+.+.+++. |+.+|+++|.++..++.+++.
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            4578999999987 36667777754 666899999999999988764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.08  E-value=0.037  Score=38.47  Aligned_cols=46  Identities=22%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEecCC-cchHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G-~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+||| .|.+++.+++....+|+++|.++..++.|++.
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            55688899999988 55666767765334999999999999998875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.99  E-value=0.13  Score=38.44  Aligned_cols=79  Identities=25%  Similarity=0.296  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+...+...+ .+.++.+|+.+...-.       ...+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            478899999988774   4455566666 89999999998888877775443 5778889987632111       1224


Q ss_pred             cccEEEEcCCC
Q 027945          117 HVDTVVMNPPF  127 (216)
Q Consensus       117 ~fD~v~~npp~  127 (216)
                      +.|.+|.|...
T Consensus        82 ~iD~lVnnAG~   92 (268)
T d2bgka1          82 KLDIMFGNVGV   92 (268)
T ss_dssp             CCCEEEECCCC
T ss_pred             Ccceecccccc
Confidence            59999987654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.95  E-value=0.12  Score=38.36  Aligned_cols=82  Identities=24%  Similarity=0.226  Sum_probs=58.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+.. +.++.++.+|+.+...-.       ...+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            578899999987773   4566666676 899999999988888777653 237888999987633111       1224


Q ss_pred             cccEEEEcCCCCCC
Q 027945          117 HVDTVVMNPPFGTR  130 (216)
Q Consensus       117 ~fD~v~~npp~~~~  130 (216)
                      +.|++|.|......
T Consensus        82 ~iDiLVnnAg~~~~   95 (251)
T d1zk4a1          82 PVSTLVNNAGIAVN   95 (251)
T ss_dssp             SCCEEEECCCCCCC
T ss_pred             CceEEEeccccccc
Confidence            59999988766544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.88  E-value=0.05  Score=40.85  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~-------~  113 (216)
                      .+++++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++.+...+...+.   ++.++.+|+.+...-.       .
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            477889999988774   4566667676 899999999999988888876654   5889999987632111       1


Q ss_pred             CCCcccEEEEcCCC
Q 027945          114 SVGHVDTVVMNPPF  127 (216)
Q Consensus       114 ~~~~fD~v~~npp~  127 (216)
                      ..++.|+++.|.-.
T Consensus        82 ~~g~iDilvnnAG~   95 (264)
T d1spxa_          82 KFGKLDILVNNAGA   95 (264)
T ss_dssp             HHSCCCEEEECCC-
T ss_pred             HhCCCCEeeccccc
Confidence            22459999987543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.16  Score=37.64  Aligned_cols=82  Identities=18%  Similarity=0.247  Sum_probs=57.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENA-ADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .+++++|-.|++.|.   .+..+++.|+ +|+.+|.+++.++.+...+ +..+.++..+.+|+.+...-.       ...
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            578899999988773   4566667676 9999999988877665544 445667888999987632111       112


Q ss_pred             CcccEEEEcCCCCC
Q 027945          116 GHVDTVVMNPPFGT  129 (216)
Q Consensus       116 ~~fD~v~~npp~~~  129 (216)
                      ++.|++|.|--...
T Consensus        82 g~iDiLVnnAG~~~   95 (251)
T d1vl8a_          82 GKLDTVVNAAGINR   95 (251)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            45999998866543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.80  E-value=0.042  Score=39.19  Aligned_cols=80  Identities=14%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEE
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVV  122 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~  122 (216)
                      ..+++++|-.|++.|.   ++..+++.|. +|+.++.+++..+.+...+.... ++.+...|..+...-...-+..|++|
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHHhcCcCeee
Confidence            5789999999987763   4566667776 99999999988887777665432 33445555543221111112389999


Q ss_pred             EcCCC
Q 027945          123 MNPPF  127 (216)
Q Consensus       123 ~npp~  127 (216)
                      .|.+.
T Consensus        98 n~Ag~  102 (191)
T d1luaa1          98 TAGAI  102 (191)
T ss_dssp             ECCCT
T ss_pred             ecCcc
Confidence            88653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.76  E-value=0.035  Score=39.13  Aligned_cols=46  Identities=30%  Similarity=0.486  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|||. |..++.+++. |+..|+.+|.+++.++.|++.
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            456888999999986 7777888865 777999999999988888775

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.74  E-value=0.095  Score=39.09  Aligned_cols=85  Identities=22%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEecCCcc---hHHHHHHHcCCCeEEE-EeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------c
Q 027945           45 GDVSNKVVADFGCGCG---TLGAAATLLGADQVIA-IDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G---~~~~~l~~~~~~~v~~-~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~  113 (216)
                      ++..|+++|-.|++.|   ..+..+++.|. +|+. ...+....+.+...+...|.++..+.+|+.+...-.       .
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence            4568899998887766   35566666676 6765 457788888888888888878889999987632111       1


Q ss_pred             CCCcccEEEEcCCCCCC
Q 027945          114 SVGHVDTVVMNPPFGTR  130 (216)
Q Consensus       114 ~~~~fD~v~~npp~~~~  130 (216)
                      ..+..|.++.|......
T Consensus        81 ~~g~idilinnag~~~~   97 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVW   97 (259)
T ss_dssp             HHSCEEEEECCCCCCCC
T ss_pred             HcCCCcEEEeccccccc
Confidence            22459999988776544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.70  E-value=0.069  Score=39.99  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=57.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcC--CCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      .+++++|-.|+++|.   ++..+++.|+ +|+.+|.+++.++.+...+...+  .++..+++|+.+...-.       ..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            367899999998874   5677777776 99999999998888776665443  26788899987632211       11


Q ss_pred             CCcccEEEEcCCC
Q 027945          115 VGHVDTVVMNPPF  127 (216)
Q Consensus       115 ~~~fD~v~~npp~  127 (216)
                      .++.|++|.|--.
T Consensus        81 ~G~iDiLVnnAG~   93 (258)
T d1iy8a_          81 FGRIDGFFNNAGI   93 (258)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCcc
Confidence            2459999987543

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase DpnM
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.70  E-value=0.074  Score=39.93  Aligned_cols=34  Identities=12%  Similarity=0.078  Sum_probs=27.2

Q ss_pred             CCCEEEEecCCcchHHHHHHHcCCCeEEEEeCCHHHH
Q 027945           48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL   84 (216)
Q Consensus        48 ~~~~vLD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~   84 (216)
                      ...+.+|++||.|++.+.+..   .+++..|+++..+
T Consensus        26 ~~~~yvEpF~Gggav~~~~~~---~~~viND~n~~li   59 (275)
T d2dpma_          26 TYNRYFEPFVGGGALFFDLAP---KDAVINDFNAELI   59 (275)
T ss_dssp             SCSCEEETTCTTCHHHHHHCC---SEEEEEESCHHHH
T ss_pred             ccCEEEeeCCCHHHHHhhhcc---CcEEEEeCCHHHH
Confidence            346899999999998887643   4789999998753

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=94.67  E-value=0.013  Score=44.41  Aligned_cols=102  Identities=7%  Similarity=0.002  Sum_probs=70.2

Q ss_pred             EEecCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCCCCCCC
Q 027945           53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPPFGTRK  131 (216)
Q Consensus        53 LD~g~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp~~~~~  131 (216)
                      +..++||-.++..+.+. ..+.+.+|+.|.-.+..+.++... .++.+.+.|.++..... ....+--+|+.||||....
T Consensus        87 l~~YPGSP~ia~~llR~-~Drl~l~ELHp~e~~~L~~~~~~~-~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k~  164 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHFN-KKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKE  164 (271)
T ss_dssp             CCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCTT-SCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTT
T ss_pred             cCcCCCCHHHHHHhCCC-CCceEEeecCHHHHHHHHHHhccC-CCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCHH
Confidence            46899999999888884 459999999999998888776432 27999999988844221 1111257999999998762


Q ss_pred             C-CCCHHHHHHHHhhcCCcEEEEecC
Q 027945          132 K-GVDMDFLSMALKVASQAVYSLHKT  156 (216)
Q Consensus       132 ~-~~~~~~l~~~~~~~~~~~~~~~~~  156 (216)
                      + ......+.++.+--+..+|.+=.|
T Consensus       165 ey~~v~~~l~~a~kr~~~g~~~iWYP  190 (271)
T d2oo3a1         165 EYKEIPYAIKNAYSKFSTGLYCVWYP  190 (271)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEee
Confidence            1 222345555555555566665444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.65  E-value=0.067  Score=37.43  Aligned_cols=71  Identities=20%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             CCCCEEEEecCCcc-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEE
Q 027945           47 VSNKVVADFGCGCG-TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVM  123 (216)
Q Consensus        47 ~~~~~vLD~g~G~G-~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~  123 (216)
                      .++.+|+-+|+|.- ..++..+.+-.++|+.+|.++..++..+.....   +++....+-.........   .|+||.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~---~~~~~~~~~~~l~~~~~~---aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---RVELLYSNSAEIETAVAE---ADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---GSEEEECCHHHHHHHHHT---CSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---cceeehhhhhhHHHhhcc---CcEEEE
Confidence            35789999999964 456777755345999999999999988777654   356666655444433334   899996

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.65  E-value=0.11  Score=38.94  Aligned_cols=84  Identities=18%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC-HHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      +.+++++|-.|++.|.   ++..+++.|+ +|+.++.+ +..++.+.+.++..+.++..+++|+.+...-.       ..
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3578899999988873   4566666676 89999987 45677777777777767888999987632111       12


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .++.|++|.|......
T Consensus        83 ~G~iDiLVnnAG~~~~   98 (261)
T d1geea_          83 FGKLDVMINNAGLENP   98 (261)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             hCCCCEeeccceecCC
Confidence            2459999988765443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.25  Score=36.41  Aligned_cols=79  Identities=27%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CCCCEEEEecCCcc---hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---cCCCcccE
Q 027945           47 VSNKVVADFGCGCG---TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---CSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G---~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~fD~  120 (216)
                      ..++++|-.|+++|   .++..+++.|. +|+.+|.+++.++.+...+.    ++..++.|+.+...-.   ...++.|.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence            57899999998877   35566666676 99999999988776655443    4677888887632111   23356999


Q ss_pred             EEEcCCCCCC
Q 027945          121 VVMNPPFGTR  130 (216)
Q Consensus       121 v~~npp~~~~  130 (216)
                      +|.|......
T Consensus        80 lVnnAg~~~~   89 (244)
T d1pr9a_          80 LVNNAAVALL   89 (244)
T ss_dssp             EEECCCCCCC
T ss_pred             EEeccccccc
Confidence            9988765443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.63  E-value=0.093  Score=38.57  Aligned_cols=67  Identities=13%  Similarity=0.184  Sum_probs=40.5

Q ss_pred             EEEEcccccccccccCCCcccEEEEcCCCCCCCC----C-CC-------HHHHHHHHhhcC--CcEEEEecCccHHHHHH
Q 027945           99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKK----G-VD-------MDFLSMALKVAS--QAVYSLHKTSTREHVKK  164 (216)
Q Consensus        99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~----~-~~-------~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~  164 (216)
                      +++++|..+..... .++++|+|+.||||+....    . ..       ..+++++.+.+.  +.+++.+.+.....+..
T Consensus         6 ~i~~gDcle~l~~l-pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~   84 (256)
T d1g60a_           6 KIHQMNCFDFLDQV-ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQ   84 (256)
T ss_dssp             SEEECCHHHHHHHS-CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHH
T ss_pred             EEEeccHHHHHhhC-cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhh
Confidence            57899999865543 3334999999999976421    1 11       135566666664  35555555554444444


Q ss_pred             HH
Q 027945          165 AA  166 (216)
Q Consensus       165 ~~  166 (216)
                      ..
T Consensus        85 ~~   86 (256)
T d1g60a_          85 YL   86 (256)
T ss_dssp             HH
T ss_pred             hh
Confidence            33

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.56  E-value=0.089  Score=39.59  Aligned_cols=80  Identities=23%  Similarity=0.201  Sum_probs=59.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCC---CeEEEEcccccccccc-------c
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~-------~  113 (216)
                      .+++++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+.+.+...+.   ++..+.+|+.+...-.       .
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            578899999988773   5566667676 999999999999999888877654   5888999987632111       1


Q ss_pred             CCCcccEEEEcCCC
Q 027945          114 SVGHVDTVVMNPPF  127 (216)
Q Consensus       114 ~~~~fD~v~~npp~  127 (216)
                      ..++.|+++.|.-.
T Consensus        82 ~~g~iDilvnnAG~   95 (272)
T d1xkqa_          82 QFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCceEEEeCCcc
Confidence            22459999987543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.54  E-value=0.23  Score=36.68  Aligned_cols=81  Identities=21%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      ..+++++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+...+..   ++.++++|+.+...-.       ...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD---AARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG---GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC---cceEEEeecCCHHHHHHHHHHHHHHh
Confidence            3578999999988773   4566666676 899999999888777666543   5788899987632111       122


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ++.|+++.|......
T Consensus        79 g~idilinnAG~~~~   93 (244)
T d1nffa_          79 GGLHVLVNNAGILNI   93 (244)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCCeEEEECCcccCC
Confidence            459999988766543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.24  Score=36.47  Aligned_cols=80  Identities=16%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.+|.+++.++...+.+..   +...+.+|+.+...-.       ...+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA---NGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG---GEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC---CCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            478899999988773   4556666666 999999999888877666543   5678888987632111       1235


Q ss_pred             cccEEEEcCCCCCC
Q 027945          117 HVDTVVMNPPFGTR  130 (216)
Q Consensus       117 ~fD~v~~npp~~~~  130 (216)
                      +.|.++.|......
T Consensus        78 ~iDilVnnAg~~~~   91 (243)
T d1q7ba_          78 EVDILVNNAGITRD   91 (243)
T ss_dssp             SCSEEEECCCCCCC
T ss_pred             Ccceehhhhhhccc
Confidence            69999988655443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.37  E-value=0.038  Score=38.96  Aligned_cols=47  Identities=23%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             CCCCCCEEEEecCCcc-hHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGCG-TLGAAATLL-GADQVIAIDIDSDSLELASENA   91 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G-~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~   91 (216)
                      ...++.+|+=+|||-. ..++.+++. |+.+|+++|.+++.++.|++.-
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            4568889999999844 345555554 6779999999999999998884

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.072  Score=37.03  Aligned_cols=46  Identities=26%  Similarity=0.232  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEecCCcch-HHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGCGT-LGAAATLL-GADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~-~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|||... ....+++. |+.+|+++|.++..++.|++.
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            55678899999997544 45555543 777999999999999988765

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.06  Score=40.57  Aligned_cols=82  Identities=21%  Similarity=0.121  Sum_probs=57.4

Q ss_pred             CCEE-EEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCc
Q 027945           49 NKVV-ADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGH  117 (216)
Q Consensus        49 ~~~v-LD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~  117 (216)
                      |++| |--|+++|.   ++..+++.+..+|+.++.+++..+.+.+.++..+.++.++.+|+.+...-.       ...++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            4555 666766663   334455554559999999999999998888887778899999987743211       12245


Q ss_pred             ccEEEEcCCCCCC
Q 027945          118 VDTVVMNPPFGTR  130 (216)
Q Consensus       118 fD~v~~npp~~~~  130 (216)
                      .|++|.|--....
T Consensus        82 iDiLVnNAGi~~~   94 (275)
T d1wmaa1          82 LDVLVNNAGIAFK   94 (275)
T ss_dssp             EEEEEECCCCCCC
T ss_pred             cEEEEEcCCcCCC
Confidence            9999998765433

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.23  E-value=0.13  Score=38.42  Aligned_cols=83  Identities=19%  Similarity=0.264  Sum_probs=56.7

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASE-NAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .+++++|-.|++.|.   ++..+++.|+ +|+.+|.++..++.+.+ ..+..+.++..+++|+.+...-.       ...
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            478899999977763   4566666676 89999998766655443 33455667889999987643111       123


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ++.|.+|.|......
T Consensus        86 g~iDilVnnAg~~~~  100 (260)
T d1h5qa_          86 GPISGLIANAGVSVV  100 (260)
T ss_dssp             CSEEEEEECCCCCCC
T ss_pred             CCCcEeccccccccc
Confidence            569999988765443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.20  E-value=0.22  Score=32.79  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             EEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEE
Q 027945           51 VVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVM  123 (216)
Q Consensus        51 ~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~  123 (216)
                      +|+=+|  .|.++..+++.   ...+|+.+|.|++.++.++...     ...++.+|..+...-. ..-.+.|.+++
T Consensus         2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            455545  57777666642   2348999999999988776543     3678999988743221 11124898887

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.10  E-value=0.064  Score=37.62  Aligned_cols=46  Identities=22%  Similarity=0.221  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEecCCcch-HHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGCGT-LGAAATL-LGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~-~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|||... .++.+++ .|+.+|+++|.++..++.+++.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            46788999999998543 4555554 4778999999999999999775

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.4  Score=35.14  Aligned_cols=77  Identities=23%  Similarity=0.242  Sum_probs=53.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---cCCCcccE
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---CSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~fD~  120 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+.    ++..+..|+.+...-.   ...++.|.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence            478899999988773   4556666676 99999999877766655433    4677888887642211   23356999


Q ss_pred             EEEcCCCC
Q 027945          121 VVMNPPFG  128 (216)
Q Consensus       121 v~~npp~~  128 (216)
                      +|.|-...
T Consensus        78 lVnnAg~~   85 (242)
T d1cyda_          78 LVNNAALV   85 (242)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccc
Confidence            99886543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.87  E-value=0.1  Score=35.89  Aligned_cols=46  Identities=33%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEecCCc-chHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~-G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-+|||. |...+.+++....+|+++|.++..++.+++.
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            556888999999873 4456666654335999999999999888764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.36  Score=36.66  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCeEEEEcccccccccc------
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRNLEWRV------  112 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~------  112 (216)
                      .+++++|-.|+++|.   ++..+++.|+ +|+.+|.+++.++.+.+.+...     +.++..+.+|+.+...-.      
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            588999999988774   4556666676 8999999998887776666532     336888999987632211      


Q ss_pred             -cCCCcccEEEEcCCCCC
Q 027945          113 -CSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       113 -~~~~~fD~v~~npp~~~  129 (216)
                       ...++.|++|.|.....
T Consensus        89 ~~~~G~iDiLVnnAg~~~  106 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQF  106 (297)
T ss_dssp             HHHHSCCCEEEECCCCCC
T ss_pred             HHHhCCeEEEEeeccccc
Confidence             12245999998865433

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.26  Score=36.53  Aligned_cols=77  Identities=26%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+.+.+.    +..++.+|+.+...-.       ...+
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRFG   78 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence            478899999988773   4566666666 99999999988877665543    4788889987632111       1224


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.+|.|.-..
T Consensus        79 ~iDilVnnAG~~   90 (250)
T d1ydea1          79 RLDCVVNNAGHH   90 (250)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEeccccc
Confidence            599999887644

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.67  E-value=0.25  Score=36.67  Aligned_cols=81  Identities=23%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      +.+++++|-.|++.|.   ++..+++.|+ +|+.+|.+++.++...+.+   +.++.++++|+.+...-.       ...
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            3578999999998883   5666666676 8999999987766554433   336888999987632111       112


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ++.|.+|.|......
T Consensus        78 g~iDilVnnAg~~~~   92 (254)
T d1hdca_          78 GSVDGLVNNAGISTG   92 (254)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCccEEEecCccccc
Confidence            459999988765443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.67  E-value=0.54  Score=34.94  Aligned_cols=83  Identities=22%  Similarity=0.187  Sum_probs=59.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC-HHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.++.+ ++.++.+...++..+.++.++.+|+.+...-.       ...
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            578999999998874   5666667676 89999986 56677777777777778888999987632110       122


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ++.|.++.|......
T Consensus        95 g~idilV~nag~~~~  109 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSF  109 (272)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCCCccccccccchh
Confidence            458999988776554

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.67  E-value=0.043  Score=41.85  Aligned_cols=58  Identities=16%  Similarity=0.113  Sum_probs=37.5

Q ss_pred             eEEEEcccccccccccCCCcccEEEEcCCCCCCCCC--------CC----HHHHHHHHhhcC--CcEEEEecC
Q 027945           98 IDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG--------VD----MDFLSMALKVAS--QAVYSLHKT  156 (216)
Q Consensus        98 ~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~--------~~----~~~l~~~~~~~~--~~~~~~~~~  156 (216)
                      -+++++|..+..... .++++|+|+.||||......        ..    ...++.+.+.+.  +.+++.+..
T Consensus        13 ~~l~~GD~le~l~~l-~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~   84 (320)
T d1booa_          13 GSMYIGDSLELLESF-PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   84 (320)
T ss_dssp             EEEEESCHHHHGGGS-CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CEEEehhHHHHHhhC-ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence            488999999866554 34569999999999865211        11    234556666654  455555543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.60  E-value=0.029  Score=42.12  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=34.5

Q ss_pred             EEEEcccccccccccCCCcccEEEEcCCCCCC-----CCCCCH----HHHHHHHhhcC--CcEEEEec
Q 027945           99 DFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTR-----KKGVDM----DFLSMALKVAS--QAVYSLHK  155 (216)
Q Consensus        99 ~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~-----~~~~~~----~~l~~~~~~~~--~~~~~~~~  155 (216)
                      -++++|..+..... .++++|+|+.||||+..     ....+.    .++.++.+.+.  +.+++.+.
T Consensus         6 ~~~~~D~le~l~~l-~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           6 VYDVCDCLDTLAKL-PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEECCHHHHHHTS-CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eEEechHHHHHhhC-cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            56789999876544 33459999999999764     112233    33445556554  34555443

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.53  E-value=0.26  Score=36.50  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|+++|.   .+..+++.|. +|+.+|.+++.++.+...+   +.++..+.+|+.+...-.       ...+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            367899999988773   4566666676 9999999988777665544   446888899987632111       1224


Q ss_pred             cccEEEEcCCCCCC
Q 027945          117 HVDTVVMNPPFGTR  130 (216)
Q Consensus       117 ~fD~v~~npp~~~~  130 (216)
                      +.|.+|.|......
T Consensus        79 ~iDilVnnAg~~~~   92 (256)
T d1k2wa_          79 SIDILVNNAALFDL   92 (256)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CccEEEeecccccc
Confidence            59999998776544

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.52  E-value=0.12  Score=41.34  Aligned_cols=50  Identities=16%  Similarity=0.094  Sum_probs=41.4

Q ss_pred             CCCCEEEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 027945           47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL   96 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~   96 (216)
                      .++..++|+||-.|..+..++..   ...+|+++|.++..++..++|++.+..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            46679999999999988776643   245999999999999999999887643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.45  E-value=0.3  Score=36.18  Aligned_cols=80  Identities=19%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+...+   +.+..++++|+.+...-.       ...+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   79 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            478899999987773   4555666666 8999999998887766554   335778888887632111       1224


Q ss_pred             cccEEEEcCCCCCC
Q 027945          117 HVDTVVMNPPFGTR  130 (216)
Q Consensus       117 ~fD~v~~npp~~~~  130 (216)
                      +.|+++.|......
T Consensus        80 ~iDilVnnAG~~~~   93 (253)
T d1hxha_          80 TLNVLVNNAGILLP   93 (253)
T ss_dssp             SCCEEEECCCCCCC
T ss_pred             CCCeEEecccccCC
Confidence            59999998766443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.65  Score=34.41  Aligned_cols=83  Identities=14%  Similarity=0.252  Sum_probs=56.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-cCCCeEEEEcccccccccc-------cCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAAD-LELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .+|+++|-.|+++|.   ++..+++.|. +|+.++.+++.++.+...+.. .+..+.....|........       ...
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            478999999999884   5677777776 999999999999887665543 3335677777765522111       111


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      +..|+++.|-.....
T Consensus        91 g~~~~li~nag~~~~  105 (269)
T d1xu9a_          91 GGLDMLILNHITNTS  105 (269)
T ss_dssp             TSCSEEEECCCCCCC
T ss_pred             CCccccccccccccc
Confidence            348888887655443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.27  E-value=0.26  Score=38.70  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             cCCCCCCc--cccccCCCCHHHH----HHHHHHHH---hhcCCCCCCEEEEecCCcchHHHHHHHc--------CCCeEE
Q 027945           13 LEQFSNPK--VELEQYPTGPHIA----SRMLYTAE---NSFGDVSNKVVADFGCGCGTLGAAATLL--------GADQVI   75 (216)
Q Consensus        13 ~~~~~~~~--~~~~~~~t~~~~~----~~~l~~~~---~~~~~~~~~~vLD~g~G~G~~~~~l~~~--------~~~~v~   75 (216)
                      ..+|....  -+-++|-|++++.    ..+..++.   ..+..++...|+|+|+|+|.++..+.+.        ...+++
T Consensus        35 ~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~  114 (365)
T d1zkda1          35 HGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVH  114 (365)
T ss_dssp             TCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEE
T ss_pred             ccccCCCCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEE
Confidence            45554332  1345688876642    22222222   2233445568999999999998777652        123689


Q ss_pred             EEeCCHHHHHHHHHHHHh
Q 027945           76 AIDIDSDSLELASENAAD   93 (216)
Q Consensus        76 ~~D~~~~~~~~a~~~~~~   93 (216)
                      .+|.++...+.-+.++..
T Consensus       115 ~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1         115 LVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             EECCCHHHHHHHHHHSTT
T ss_pred             EeccchhHHHHHHHHhcc
Confidence            999999877777776653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.02  E-value=0.39  Score=35.32  Aligned_cols=81  Identities=19%  Similarity=0.213  Sum_probs=54.4

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|++.|.   ++..+++.|+ +|+.+|.++.  +.+...++..+.++..+.+|+.+...-.       ...+
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            478899999987773   4566666676 8999998764  3334445555667889999987632111       1224


Q ss_pred             cccEEEEcCCCCCC
Q 027945          117 HVDTVVMNPPFGTR  130 (216)
Q Consensus       117 ~fD~v~~npp~~~~  130 (216)
                      +.|+++.|.-....
T Consensus        80 ~iDilVnnAG~~~~   93 (247)
T d2ew8a1          80 RCDILVNNAGIYPL   93 (247)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CCCEEEECCCCCCC
Confidence            59999988665443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.96  E-value=0.23  Score=32.67  Aligned_cols=63  Identities=16%  Similarity=0.288  Sum_probs=40.0

Q ss_pred             CCcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEEEcCC
Q 027945           57 CGCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVVMNPP  126 (216)
Q Consensus        57 ~G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~~npp  126 (216)
                      ||.|.++..+++    .|. +|+.+|.|++.++.++..      ....+.+|..+...-. ..-.+.|.+++-.+
T Consensus         6 iG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY------ATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT------CSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             ECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh------CCcceeeecccchhhhccCCccccEEEEEcC
Confidence            356777766664    354 899999999998887532      2466788887643211 01113888887444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.90  E-value=0.32  Score=36.60  Aligned_cols=84  Identities=24%  Similarity=0.307  Sum_probs=57.7

Q ss_pred             CCCCCEEEEecCCcc---hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HhcCCCeEEEEcccccccccc-------cC
Q 027945           46 DVSNKVVADFGCGCG---TLGAAATLLGADQVIAIDIDSDSLELASENA-ADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G---~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      ..+++++|-.|++.|   .++..+++.|. +|+.+|.+...++.+...+ ...+.++.++.+|+.+...-.       ..
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence            357789999998877   34555666665 9999999988877665544 344557888899987633211       12


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .+..|+++.|......
T Consensus       101 ~g~iDilvnnAg~~~~  116 (294)
T d1w6ua_         101 AGHPNIVINNAAGNFI  116 (294)
T ss_dssp             TCSCSEEEECCCCCCC
T ss_pred             ccccchhhhhhhhccc
Confidence            2459999987765444

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.81  E-value=0.47  Score=34.90  Aligned_cols=75  Identities=28%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|++.|.   ++..+++.|. +|+.+|.+++..+.++..      +..++++|+.+...-.       ...+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI------GGAFFQVDLEDERERVRFVEEAAYALG   75 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc------CCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            478899999987773   4556666676 999999998876655433      3567888987632111       1224


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.+|.|--..
T Consensus        76 ~iDiLVnnAG~~   87 (248)
T d2d1ya1          76 RVDVLVNNAAIA   87 (248)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCeEEEeCcCC
Confidence            599999876543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.57  E-value=0.48  Score=32.36  Aligned_cols=90  Identities=21%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             EEEEecCCc-ch-HHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCC
Q 027945           51 VVADFGCGC-GT-LGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPF  127 (216)
Q Consensus        51 ~vLD~g~G~-G~-~~~~l~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~  127 (216)
                      +|+=+|||. |. ++..+.+.+ ..+|+++|.++..++.+++.-.     +.....+.......  .   .|+|+...| 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-----~~~~~~~~~~~~~~--~---~dlIila~p-   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----IDEGTTSIAKVEDF--S---PDFVMLSSP-   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----CSEEESCGGGGGGT--C---CSEEEECSC-
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-----chhhhhhhhhhhcc--c---cccccccCC-
Confidence            577788764 32 344454555 3589999999999998877621     12222222222212  3   899987555 


Q ss_pred             CCCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          128 GTRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       128 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                          .......+.++..... +.+...+.
T Consensus        72 ----~~~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          72 ----VRTFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             ----HHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ----chhhhhhhhhhhccccccccccccc
Confidence                1233456666665554 44444333

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.35  Score=35.75  Aligned_cols=82  Identities=22%  Similarity=0.278  Sum_probs=57.9

Q ss_pred             CCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhc--CCCeEEEEcccccccccc-------cCC
Q 027945           48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLEWRV-------CSV  115 (216)
Q Consensus        48 ~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~-------~~~  115 (216)
                      .|+++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+...+...  +.++.++.+|+.+...-.       ...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            57889999988774   4555666676 9999999999888887776543  226888999987732111       112


Q ss_pred             CcccEEEEcCCCCCC
Q 027945          116 GHVDTVVMNPPFGTR  130 (216)
Q Consensus       116 ~~fD~v~~npp~~~~  130 (216)
                      ++.|+++.|-.....
T Consensus        81 G~iDilVnnAg~~~~   95 (254)
T d2gdza1          81 GRLDILVNNAGVNNE   95 (254)
T ss_dssp             SCCCEEEECCCCCCS
T ss_pred             CCcCeeccccccccc
Confidence            459999988766544

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.25  E-value=0.62  Score=34.01  Aligned_cols=80  Identities=19%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             EEEEecCCcch---HHHHHHHcCCC------eEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945           51 VVADFGCGCGT---LGAAATLLGAD------QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        51 ~vLD~g~G~G~---~~~~l~~~~~~------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      .||-.|+++|.   ++..+++.|..      .|+.++.+++.++.....++..+.++.++.+|+.+...-.       ..
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            46777887773   45566666663      3899999999999888888877777888999987743111       12


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .+..|+++.|......
T Consensus        83 ~g~iDilvnnAg~~~~   98 (240)
T d2bd0a1          83 YGHIDCLVNNAGVGRF   98 (240)
T ss_dssp             TSCCSEEEECCCCCCC
T ss_pred             cCCcceeecccccccC
Confidence            3569999988766544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.09  E-value=0.41  Score=35.42  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCC-HHHHHHHHHHHH-hcCCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDID-SDSLELASENAA-DLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~-~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      .+++++|-.|++.|.   .+..+++.|. +|+.++.+ +..++.+...+. ..+.++.++.+|+.+...-.       ..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            367889988888774   4556667676 99999986 566666655543 34557889999988732111       12


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .++.|++|.|-.....
T Consensus        81 ~G~iDiLVnnAG~~~~   96 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHT   96 (260)
T ss_dssp             HSCCSEEEECCCCCCC
T ss_pred             hCCCcEEEeecccccC
Confidence            2459999988665443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.02  E-value=0.3  Score=33.86  Aligned_cols=89  Identities=18%  Similarity=0.219  Sum_probs=54.1

Q ss_pred             CCCCCCEEEEecCCcc-hHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc---ccccCCCccc
Q 027945           45 GDVSNKVVADFGCGCG-TLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE---WRVCSVGHVD  119 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G-~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~fD  119 (216)
                      ...++.+||-+|||.- ..++.+++ .|...++.+|.++..++.+++.    |. .+++..+-.+..   ... ..+.+|
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga-~~~i~~~~~~~~~~i~~~-t~gg~D   98 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA-THVINSKTQDPVAAIKEI-TDGGVN   98 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC-SEEEETTTSCHHHHHHHH-TTSCEE
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC-eEEEeCCCcCHHHHHHHH-cCCCCc
Confidence            4568889999998743 34555554 3777889999999999998875    21 233333322211   111 233599


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHhhcC
Q 027945          120 TVVMNPPFGTRKKGVDMDFLSMALKVAS  147 (216)
Q Consensus       120 ~v~~npp~~~~~~~~~~~~l~~~~~~~~  147 (216)
                      +|+-...        ....++.+.+..+
T Consensus        99 ~vid~~G--------~~~~~~~~~~~~~  118 (174)
T d1f8fa2          99 FALESTG--------SPEILKQGVDALG  118 (174)
T ss_dssp             EEEECSC--------CHHHHHHHHHTEE
T ss_pred             EEEEcCC--------cHHHHHHHHhccc
Confidence            9884321        2355666666654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.90  E-value=0.92  Score=33.08  Aligned_cols=76  Identities=24%  Similarity=0.238  Sum_probs=52.5

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+.+.+     +...+.+|+.+...-.       ...+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence            367899999988773   4555666676 8999999998877765543     4678889987632111       1124


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|.+|.|--..
T Consensus        77 ~iDilVnnAG~~   88 (242)
T d1ulsa_          77 RLDGVVHYAGIT   88 (242)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CceEEEECCccc
Confidence            599999876543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.59  E-value=0.33  Score=33.07  Aligned_cols=47  Identities=30%  Similarity=0.309  Sum_probs=35.4

Q ss_pred             cCCCCCCEEEEecCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 027945           44 FGDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ....++.+||-.|||.-. ..+.+++....+|+++|.+++.++.++..
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            356688899999988644 45566655445999999999998888664

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.20  E-value=0.2  Score=34.56  Aligned_cols=46  Identities=30%  Similarity=0.377  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEecCC-cchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G-~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+||-.||| .|.+++.+++ .|+..|+++|.++...+.+++.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            45688999999987 2334555554 4778999999999999888875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.91  E-value=0.4  Score=32.84  Aligned_cols=47  Identities=19%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             cCCCCCCEEEEecCC--cchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945           44 FGDVSNKVVADFGCG--CGTLGAAATL-LGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        44 ~~~~~~~~vLD~g~G--~G~~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ....++.+||-+||+  .|..++.+++ .+..+|+++|.++..++.+++.
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            356688899999973  4455565554 4777999999999999988875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.44  Score=32.62  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             hhcCCCCCCEEEEecCC-cchHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 027945           42 NSFGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        42 ~~~~~~~~~~vLD~g~G-~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ......++.+||-+||| .|.+.+.+++.-..+++++|.++...+.+++.
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence            33356788999999987 35566777765334888999998888877654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.42  E-value=0.32  Score=33.51  Aligned_cols=45  Identities=24%  Similarity=0.264  Sum_probs=34.8

Q ss_pred             CCCCCEEEEecCCcch-HHHHHHH-cCCCeEEEEeCCHHHHHHHHHH
Q 027945           46 DVSNKVVADFGCGCGT-LGAAATL-LGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~-~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ..++.+||-.|+|... .++.+++ .|+..|+++|.++..++.+++.
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            3577899999998554 4556664 4777999999999888888865

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.19  E-value=0.71  Score=34.41  Aligned_cols=76  Identities=22%  Similarity=0.259  Sum_probs=52.6

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      .+++++|-.|+++|.   ++..+++.|+ +|+.+|.+++.++.......   .++..+.+|+.+...-.       ...+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHG---DNVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC---CCeeEEecccccHHHHHHHHHHHHHHhC
Confidence            368899999987773   4566666676 99999999988776655443   36788899987632111       1224


Q ss_pred             cccEEEEcCC
Q 027945          117 HVDTVVMNPP  126 (216)
Q Consensus       117 ~fD~v~~npp  126 (216)
                      +.|.++.|--
T Consensus        79 ~idilvnnAG   88 (276)
T d1bdba_          79 KIDTLIPNAG   88 (276)
T ss_dssp             CCCEEECCCC
T ss_pred             Cccccccccc
Confidence            5999997654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.76  E-value=1.7  Score=31.60  Aligned_cols=79  Identities=18%  Similarity=0.101  Sum_probs=52.3

Q ss_pred             EEEEecCCcch---HHHHHHHcCCCeEEEEeC-CHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCCccc
Q 027945           51 VVADFGCGCGT---LGAAATLLGADQVIAIDI-DSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVGHVD  119 (216)
Q Consensus        51 ~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~fD  119 (216)
                      .+|-.|++.|.   .+..+++.|. +|+..+. ++..++.+.+.++..+.++.++.+|+.+...-.       ...++.|
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            56666766652   3444555566 8888775 677788888877777767888999987742211       1235699


Q ss_pred             EEEEcCCCCCC
Q 027945          120 TVVMNPPFGTR  130 (216)
Q Consensus       120 ~v~~npp~~~~  130 (216)
                      +++.|......
T Consensus        82 iLVnnAg~~~~   92 (244)
T d1edoa_          82 VVVNNAGITRD   92 (244)
T ss_dssp             EEEECCCCCCC
T ss_pred             ccccccccccc
Confidence            99987655443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.11  E-value=0.36  Score=33.23  Aligned_cols=46  Identities=28%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEecCCcchH-HHHHH-HcCCCeEEEEeCCHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGCGTL-GAAAT-LLGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~~-~~~l~-~~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ...++.+|+-+|||.+.. ...++ ..+..+|+++|.+++.++.+++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            456888999999988554 34344 44777999999999998888765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.95  E-value=1.4  Score=29.75  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             EEEEecCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCC
Q 027945           51 VVADFGCGC-G-TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFG  128 (216)
Q Consensus        51 ~vLD~g~G~-G-~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~  128 (216)
                      +|.=+|+|. | .++..+.+.|. +|+++|.+++.++.+++.    +. +.....+. +..   ..   .|+|+.--|  
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~~-~~~~~~~~-~~~---~~---~DiIilavp--   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QL-VDEAGQDL-SLL---QT---AKIIFLCTP--   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TS-CSEEESCG-GGG---TT---CSEEEECSC--
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----hc-cceeeeec-ccc---cc---cccccccCc--
Confidence            466676652 1 23344444455 999999999888877654    21 11111222 111   13   899996544  


Q ss_pred             CCCCCCCHHHHHHHHhhcC-CcEEEEec
Q 027945          129 TRKKGVDMDFLSMALKVAS-QAVYSLHK  155 (216)
Q Consensus       129 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~  155 (216)
                         .......++++..... +.+.+.+.
T Consensus        67 ---~~~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          67 ---IQLILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             ---HHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             ---Hhhhhhhhhhhhhhcccccceeecc
Confidence               1233456666655554 34444443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.66  Score=31.83  Aligned_cols=45  Identities=9%  Similarity=0.074  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEecC--CcchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~--G~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++.+||-.|+  |.|..++.+++.-..+|++++.+++..+.+++
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence            3457889999996  46677788886533489999999887777765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.74  E-value=1.5  Score=28.27  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=44.3

Q ss_pred             CCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccccc-ccccCCCcccEEEEcCC
Q 027945           57 CGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE-WRVCSVGHVDTVVMNPP  126 (216)
Q Consensus        57 ~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~fD~v~~npp  126 (216)
                      ||.|..+..+++. ....++.+|.++...+.++..      .+.++.+|..+.. .....-.+.+.+++..+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS------GANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------CccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            6888899998874 234789999999988766433      4788999987632 11112234888888554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.47  E-value=0.96  Score=30.99  Aligned_cols=45  Identities=18%  Similarity=0.111  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEecC-C-cchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 027945           45 GDVSNKVVADFGC-G-CGTLGAAATLLGADQVIAIDIDSDSLELASE   89 (216)
Q Consensus        45 ~~~~~~~vLD~g~-G-~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~   89 (216)
                      ...++++||-.|+ | .|...+.+++....+|++++.+++..+.+++
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc
Confidence            4568889999885 3 3567777786544499999999887777765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=87.35  E-value=0.69  Score=28.32  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             CCCCEEEEecCC-cchH-HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           47 VSNKVVADFGCG-CGTL-GAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        47 ~~~~~vLD~g~G-~G~~-~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      .++++|+=+|.| ||.- ...+++.|. +|++.|..+.....  ..++   ..+.+..+...+....  .   +|+|+..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~--~---~d~vi~S   71 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGL--DKLP---EAVERHTGSLNDEWLM--A---ADLIVAS   71 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTG--GGSC---TTSCEEESBCCHHHHH--H---CSEEEEC
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhH--HHHh---hccceeecccchhhhc--c---CCEEEEC
Confidence            467889999988 4432 333445555 99999975421110  1111   1244444444333333  3   9999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHh
Q 027945          125 PPFGTRKKGVDMDFLSMALK  144 (216)
Q Consensus       125 pp~~~~~~~~~~~~l~~~~~  144 (216)
                      |-...     +.+.++.+.+
T Consensus        72 PGi~~-----~~~~~~~a~~   86 (93)
T d2jfga1          72 PGIAL-----AHPSLSAAAD   86 (93)
T ss_dssp             TTSCT-----TSHHHHHHHH
T ss_pred             CCCCC-----CCHHHHHHHH
Confidence            87532     2345555544

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.30  E-value=1.1  Score=32.30  Aligned_cols=71  Identities=23%  Similarity=0.244  Sum_probs=47.0

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-cCCCcccEEE
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-CSVGHVDTVV  122 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~fD~v~  122 (216)
                      .+++++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.       .  ..+++.+|+.+..... ...++.|.++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~-------~--~~~~~~~Dv~~~~~~~~~~~g~iD~lV   71 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKR-------S--GHRYVVCDLRKDLDLLFEKVKEVDILV   71 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH-------T--CSEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHh-------c--CCcEEEcchHHHHHHHHHHhCCCcEEE
Confidence            367899999988773   4555666676 99999999765432       1  2466778876532111 1224599999


Q ss_pred             EcCCC
Q 027945          123 MNPPF  127 (216)
Q Consensus       123 ~npp~  127 (216)
                      .|.-.
T Consensus        72 nnAG~   76 (234)
T d1o5ia_          72 LNAGG   76 (234)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            88644

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.11  E-value=2.1  Score=31.02  Aligned_cols=81  Identities=20%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             CCCCEEEEecCCc--c---hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-------cccC
Q 027945           47 VSNKVVADFGCGC--G---TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-------RVCS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~--G---~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-------~~~~  114 (216)
                      .+++++|-.|+++  |   ..+..+++.|. +|+.++.++...+.+.+.....+ +......|..+...       ....
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG-SDIVLQCDVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcC-CcceeecccchHHHHHHHHHHhhhc
Confidence            4788999999866  5   25667777676 89999999887777777666554 34445555443211       0123


Q ss_pred             CCcccEEEEcCCCCC
Q 027945          115 VGHVDTVVMNPPFGT  129 (216)
Q Consensus       115 ~~~fD~v~~npp~~~  129 (216)
                      .++.|.++.+..+..
T Consensus        81 ~~~~d~~v~~a~~~~   95 (258)
T d1qsga_          81 WPKFDGFVHSIGFAP   95 (258)
T ss_dssp             CSSEEEEEECCCCCC
T ss_pred             ccccceEEEeecccc
Confidence            345899998765543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.01  E-value=1.1  Score=32.60  Aligned_cols=78  Identities=22%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc---cCCCcccE
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV---CSVGHVDT  120 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~fD~  120 (216)
                      .+++++|-.|++.|.   .+..+++.|. +|+.+|.++..++...+   .  ..++....|+......+   ...+..|.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~---~--~~~~~~~~d~~~~~~~~~~~~~~~~id~   77 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEK---Y--PGIQTRVLDVTKKKQIDQFANEVERLDV   77 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGG---S--TTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh---c--cCCceeeeecccccccccccccccccee
Confidence            578899999987664   4566666676 99999999876544322   1  24666666765422111   11234999


Q ss_pred             EEEcCCCCCC
Q 027945          121 VVMNPPFGTR  130 (216)
Q Consensus       121 v~~npp~~~~  130 (216)
                      ++.|..+...
T Consensus        78 lVn~ag~~~~   87 (245)
T d2ag5a1          78 LFNVAGFVHH   87 (245)
T ss_dssp             EEECCCCCCC
T ss_pred             EEecccccCC
Confidence            9988776554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.79  E-value=1.1  Score=32.51  Aligned_cols=78  Identities=21%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cCCC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CSVG  116 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~  116 (216)
                      ..++++|-.|++.|.   ++..+++.|. +|+.++.+.+.++....   ..+.++.++++|+.+...-.       ...+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g   78 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVA---ALEAEAIAVVADVSDPKAVEAVFAEALEEFG   78 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TCCSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            478899999988773   4566666676 99999999876654433   33447888999987633211       1114


Q ss_pred             cccEEEEcCCCC
Q 027945          117 HVDTVVMNPPFG  128 (216)
Q Consensus       117 ~fD~v~~npp~~  128 (216)
                      +.|+++.|-...
T Consensus        79 ~iDiLinnAg~~   90 (241)
T d2a4ka1          79 RLHGVAHFAGVA   90 (241)
T ss_dssp             CCCEEEEGGGGT
T ss_pred             CccEeccccccc
Confidence            599999875443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.59  E-value=2.9  Score=27.66  Aligned_cols=71  Identities=11%  Similarity=0.069  Sum_probs=41.5

Q ss_pred             EEEecCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccc-cccCCCcccEEEEcCC
Q 027945           52 VADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW-RVCSVGHVDTVVMNPP  126 (216)
Q Consensus        52 vLD~g~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~fD~v~~npp  126 (216)
                      ++=+  |.|.++..+++.   ...+++.+|.+++............  .+.++.+|..+... ....-.+.|.|++-.+
T Consensus         6 iII~--G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~--~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           6 FIVC--GHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             EEEE--CCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             EEEE--CCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC--CcEEEEccCcchHHHHHhccccCCEEEEccc
Confidence            4444  446665555542   2348999999987554443333322  47889999877432 1112124888987544

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.57  E-value=2.8  Score=33.28  Aligned_cols=102  Identities=22%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             hhHHHHHhccCCCCCCccccccCCCCHHHHHHHHHHHHhhcCCCCCCEEEEecCC-cch-HHHHHHHcCCCeEEEEeCCH
Q 027945            4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCG-CGT-LGAAATLLGADQVIAIDIDS   81 (216)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~vLD~g~G-~G~-~~~~l~~~~~~~v~~~D~~~   81 (216)
                      ++++.++.+-.+|.++....     +.+....+|          .+.+||-+||| .|. +...++..|..+++.+|.|.
T Consensus         7 ~~~~~~~~r~~~~~~~~~~~-----~~e~~~~~l----------~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1           7 NHVKKFLERSGPFTHPDFEP-----STESLQFLL----------DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHHHHHHHSCCTTCCTTCCC-----CSSHHHHHH----------HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             hhHHHHHhcCCCCcCccccc-----ChHHHHHHH----------hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            45777888888886665443     223333333          23589999998 554 34556666888999999652


Q ss_pred             H-------------------HHHHHHHHHHhcCC--CeEEEEcccccccccc-cCCCcccEEEE
Q 027945           82 D-------------------SLELASENAADLEL--DIDFVQCDIRNLEWRV-CSVGHVDTVVM  123 (216)
Q Consensus        82 ~-------------------~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~-~~~~~fD~v~~  123 (216)
                      -                   -.+.|.+.++..+.  ++..+..++.+..... ..   ||+|+.
T Consensus        72 Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~---~DlVi~  132 (426)
T d1yovb1          72 IDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQ---FHIIVC  132 (426)
T ss_dssp             CCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSCGGGBCHHHHTT---CSEEEE
T ss_pred             cchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeeccccchHHHHHHh---cchhee
Confidence            1                   23556666654432  6777777776543221 23   999996

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.41  E-value=2.4  Score=26.10  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=39.7

Q ss_pred             CCCEEEEec-CCcch--HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEc
Q 027945           48 SNKVVADFG-CGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMN  124 (216)
Q Consensus        48 ~~~~vLD~g-~G~G~--~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~n  124 (216)
                      ..+++.=+| ||+|-  ++..+...|. +|+|.|.....  .. +.+...|  +.+..+...+.. .  .   .|+|+..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~--~~-~~L~~~G--i~v~~g~~~~~i-~--~---~d~vV~S   74 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGV--VT-QRLAQAG--AKIYIGHAEEHI-E--G---ASVVVVS   74 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSH--HH-HHHHHTT--CEEEESCCGGGG-T--T---CSEEEEC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCCh--hh-hHHHHCC--CeEEECCccccC-C--C---CCEEEEC
Confidence            446777776 34664  4566667677 99999985321  11 2223334  555555544332 2  3   8999987


Q ss_pred             CCC
Q 027945          125 PPF  127 (216)
Q Consensus       125 pp~  127 (216)
                      |..
T Consensus        75 ~AI   77 (96)
T d1p3da1          75 SAI   77 (96)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            663

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.92  E-value=0.72  Score=31.67  Aligned_cols=47  Identities=26%  Similarity=0.280  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEecCCcch-HHHHHHH-cCCCeEEEEeCCHHHHHHHHHHH
Q 027945           45 GDVSNKVVADFGCGCGT-LGAAATL-LGADQVIAIDIDSDSLELASENA   91 (216)
Q Consensus        45 ~~~~~~~vLD~g~G~G~-~~~~l~~-~~~~~v~~~D~~~~~~~~a~~~~   91 (216)
                      ...++.+||-+|+|-+. ..+.+++ .++.+|+++|.++...+.+++.-
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            45688999999997443 3444443 47789999999999999887763

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.18  E-value=1.5  Score=32.00  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=44.2

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhcC--CCeEEEEcccccc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLL--GADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL  108 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~  108 (216)
                      ..++++|--|+++|.   ++..+++.  ...+|+.++.+++.++.+.+.+...+  .++.++.+|+.+.
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~   72 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE   72 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence            467777777887774   34445542  23499999999999988877775543  3688899998763

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.18  E-value=1.2  Score=30.48  Aligned_cols=45  Identities=7%  Similarity=-0.053  Sum_probs=35.3

Q ss_pred             CCCCCEEEEecCC--cchHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 027945           46 DVSNKVVADFGCG--CGTLGAAATLLGADQVIAIDIDSDSLELASEN   90 (216)
Q Consensus        46 ~~~~~~vLD~g~G--~G~~~~~l~~~~~~~v~~~D~~~~~~~~a~~~   90 (216)
                      ..++++||-.|+|  .|...+.+++....+|++++.+++..+.+++.
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc
Confidence            4678899998666  45678888866444999999999999888764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.78  E-value=2.5  Score=30.67  Aligned_cols=80  Identities=21%  Similarity=0.120  Sum_probs=53.7

Q ss_pred             CCCCCEEEEecCCc--c--h-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------c
Q 027945           46 DVSNKVVADFGCGC--G--T-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------C  113 (216)
Q Consensus        46 ~~~~~~vLD~g~G~--G--~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~  113 (216)
                      +.+++++|-.|+++  |  . ++..+++.|+ +|+.++.++...+.+.+.....+ +..++.+|+.+...-.       .
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccC-cccccccccCCHHHHHHHHHHHHH
Confidence            35789999999754  3  2 5566666676 89999999877777766655544 5667888886632111       1


Q ss_pred             CCCcccEEEEcCCC
Q 027945          114 SVGHVDTVVMNPPF  127 (216)
Q Consensus       114 ~~~~fD~v~~npp~  127 (216)
                      ..++.|.++.|-.+
T Consensus        83 ~~g~iDilVnnag~   96 (256)
T d1ulua_          83 AFGGLDYLVHAIAF   96 (256)
T ss_dssp             HHSSEEEEEECCCC
T ss_pred             hcCCceEEEecccc
Confidence            22459999977654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=84.15  E-value=2.1  Score=31.28  Aligned_cols=82  Identities=13%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             CCCCEEEEecCC----cch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccc-------cC
Q 027945           47 VSNKVVADFGCG----CGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRV-------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G----~G~-~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~-------~~  114 (216)
                      .+++++|-.|++    .|. .+..+++.|. +|+.++.++...+.+++..+. +....+...|+.......       ..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQE-LNSPYVYELDVSKEEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHH-TTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhh-CCceeEeeecccchhhHHHHHHHHHHH
Confidence            478999999963    232 4556666666 999999997655655554443 334556677765532111       12


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .++.|.++.|..+...
T Consensus        81 ~g~id~lV~nag~~~~   96 (274)
T d2pd4a1          81 LGSLDFIVHSVAFAPK   96 (274)
T ss_dssp             TSCEEEEEECCCCCCG
T ss_pred             cCCCCeEEeecccccc
Confidence            2459999987765543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.89  E-value=1.7  Score=31.37  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=41.1

Q ss_pred             CCCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEccccc
Q 027945           46 DVSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        46 ~~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      ..+|+++|-.|++.|.   ++..+++.|+ +|+.+|.+.+.++...+.+.   .+......|..+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~~   62 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLG---NNCVFAPADVTS   62 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHC---TTEEEEECCTTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC---CCcccccccccc
Confidence            3588999999998874   4566666677 89999999877766555442   245666666554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=82.63  E-value=2.4  Score=30.90  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEE-eCCHHHHHHHHHHHHhcCCCeEEEEccccc-cc-ccc------cC
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAI-DIDSDSLELASENAADLELDIDFVQCDIRN-LE-WRV------CS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~------~~  114 (216)
                      .+++++|-.|+++|.   ++..+++.|+ +|+.+ +.++...+.++......+.++.++..|... .. ...      ..
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            478899999998884   4566666677 55544 554433222222222223368888888753 21 110      12


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .++.|+++.|......
T Consensus        82 ~g~iDilvnnAG~~~~   97 (254)
T d1sbya1          82 LKTVDILINGAGILDD   97 (254)
T ss_dssp             HSCCCEEEECCCCCCT
T ss_pred             cCCCCEEEeCCCCCCH
Confidence            2459999998775443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.73  E-value=2.6  Score=31.64  Aligned_cols=82  Identities=21%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             CCCCEEEEecCCcch---HHHHHHHcCCCeEEEEeCCH---------HHHHHHHHHHHhcCCCeEEEEccccccc---cc
Q 027945           47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---------DSLELASENAADLELDIDFVQCDIRNLE---WR  111 (216)
Q Consensus        47 ~~~~~vLD~g~G~G~---~~~~l~~~~~~~v~~~D~~~---------~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~  111 (216)
                      .+++++|-.|++.|.   ++..+++.|+ +|+..|++.         ..++.....+...+........|.....   ..
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~   83 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKT   83 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHH
Confidence            478899999999884   5666777776 899998753         3344444444443333333333332211   00


Q ss_pred             -ccCCCcccEEEEcCCCCC
Q 027945          112 -VCSVGHVDTVVMNPPFGT  129 (216)
Q Consensus       112 -~~~~~~fD~v~~npp~~~  129 (216)
                       ....++.|++|.|--...
T Consensus        84 ~~~~~G~iDiLVnNAGi~~  102 (302)
T d1gz6a_          84 ALDTFGRIDVVVNNAGILR  102 (302)
T ss_dssp             HHHHTSCCCEEEECCCCCC
T ss_pred             HHHHcCCCCEEEECCccCC
Confidence             012345999998865543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=81.10  E-value=2.4  Score=28.97  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=52.6

Q ss_pred             CcchHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC
Q 027945           58 GCGTLGAAATL----LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG  133 (216)
Q Consensus        58 G~G~~~~~l~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~  133 (216)
                      |.|.++..+++    .|. +|++.|.+++.++....+-....  .........+.......   .|.++...|    ...
T Consensus         9 GlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~---~~~ii~~~~----~~~   78 (176)
T d2pgda2           9 GLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEMVSKLKK---PRRIILLVK----AGQ   78 (176)
T ss_dssp             CCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTS--SCEECSSHHHHHHHBCS---SCEEEECSC----TTH
T ss_pred             eEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccc--cccchhhhhhhhhhhcc---cceEEEecC----chH
Confidence            55666666664    355 89999999988877655422111  11111122222111112   677776555    222


Q ss_pred             CCHHHHHHHHhhcC-CcEEEEecCccHHHHHHHH
Q 027945          134 VDMDFLSMALKVAS-QAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       134 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  166 (216)
                      ........+..... +.+++-+.+.......+..
T Consensus        79 ~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~  112 (176)
T d2pgda2          79 AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRC  112 (176)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCcEEEecCcchhHHHHHHH
Confidence            23344555555444 5677777666665555555

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.54  E-value=2.7  Score=32.28  Aligned_cols=72  Identities=24%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             CCEEEEecCCcchHHHHHHH----cCCCeEEEEeCCHHH-----------------HHHHHHHHHhcCCCeEEEEccccc
Q 027945           49 NKVVADFGCGCGTLGAAATL----LGADQVIAIDIDSDS-----------------LELASENAADLELDIDFVQCDIRN  107 (216)
Q Consensus        49 ~~~vLD~g~G~G~~~~~l~~----~~~~~v~~~D~~~~~-----------------~~~a~~~~~~~~~~~~~~~~d~~~  107 (216)
                      |++||-.|+ +|.++..+++    .|. +|+++|.-...                 .+.........+.+++++.+|+.+
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~-~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNY-EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   78 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcC-EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCC
Confidence            568888774 9988877764    354 99999932111                 111111111223368999999876


Q ss_pred             cccccc--CCCcccEEE
Q 027945          108 LEWRVC--SVGHVDTVV  122 (216)
Q Consensus       108 ~~~~~~--~~~~fD~v~  122 (216)
                      ...-..  ...++|.|+
T Consensus        79 ~~~l~~~~~~~~~d~Vi   95 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVV   95 (393)
T ss_dssp             HHHHHHHHHHHCCSEEE
T ss_pred             HHHHHHHHHhhcchhee
Confidence            422110  001279887

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=80.44  E-value=1.9  Score=31.36  Aligned_cols=84  Identities=13%  Similarity=0.089  Sum_probs=49.2

Q ss_pred             CCCCEEEEecCCcc---hHHHHHHHcCCCeEEEEeCC---HHHHHHHHHHHHhcCCCeEEEEccccccccc------ccC
Q 027945           47 VSNKVVADFGCGCG---TLGAAATLLGADQVIAIDID---SDSLELASENAADLELDIDFVQCDIRNLEWR------VCS  114 (216)
Q Consensus        47 ~~~~~vLD~g~G~G---~~~~~l~~~~~~~v~~~D~~---~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~------~~~  114 (216)
                      .++.++|-.|++.|   .+...+++.|..+|+.+--+   .+..+.....++..|.++.++.+|+.+...-      ...
T Consensus         7 ~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           7 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccc
Confidence            36678999996554   23444555677667766432   3334444444555566889999998763211      112


Q ss_pred             CCcccEEEEcCCCCCC
Q 027945          115 VGHVDTVVMNPPFGTR  130 (216)
Q Consensus       115 ~~~fD~v~~npp~~~~  130 (216)
                      .+..|.|+.|......
T Consensus        87 ~~~i~~vv~~ag~~~~  102 (259)
T d2fr1a1          87 DVPLSAVFHAAATLDD  102 (259)
T ss_dssp             TSCEEEEEECCCCCCC
T ss_pred             cccccccccccccccc
Confidence            2348888876665444

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.41  E-value=1.7  Score=29.31  Aligned_cols=91  Identities=10%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             CcchHHHHHH----HcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEEEEcccccccccccCCCcccEEEEcCCCCCCCCC
Q 027945           58 GCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRVCSVGHVDTVVMNPPFGTRKKG  133 (216)
Q Consensus        58 G~G~~~~~l~----~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~v~~npp~~~~~~~  133 (216)
                      |.|.++..++    +.|. +|++.|.++...+.+...-      .. ...+..+.. .  .   .|+|++--|    ...
T Consensus         7 GlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~------~~-~~~~~~e~~-~--~---~d~ii~~v~----~~~   68 (161)
T d1vpda2           7 GLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAG------AE-TASTAKAIA-E--Q---CDVIITMLP----NSP   68 (161)
T ss_dssp             CCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT------CE-ECSSHHHHH-H--H---CSEEEECCS----SHH
T ss_pred             ehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhh------hh-hcccHHHHH-h--C---CCeEEEEcC----CHH
Confidence            4455555555    3455 8999999998887776541      22 222332222 2  2   798887655    111


Q ss_pred             CCHHHH---HHHHhhc-CCcEEEEecCccHHHHHHHH
Q 027945          134 VDMDFL---SMALKVA-SQAVYSLHKTSTREHVKKAA  166 (216)
Q Consensus       134 ~~~~~l---~~~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .....+   ..+.... ++.+++.+.+...+...+..
T Consensus        69 ~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~  105 (161)
T d1vpda2          69 HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREIS  105 (161)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHH
T ss_pred             HHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHH
Confidence            111222   1123222 36778877777666666555