Citrus Sinensis ID: 027960

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
MKPHGLFCPNVISFVSSLLLLFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF
ccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccEEccccccHHHHHHHccccccccccccccccEEEEEccHHHHHHHHHHHHHccccEEEEcccccccccccccccccEEEEccccccEEEcccccEEEEcccccHHHHHHHHHHHccccEEEccccccccccccccccccccHHHHHHHHHHcEEcEEEEEccccccc
ccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccEEEEccccccHHHHHHHHHHccccccccccccEEEEEcccccHHEEEEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccEEEEEEEEcccccc
mkphglfcpnVISFVSSLLLLFRgaalapenhENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNlvfsaptnqkplfiitpFHVSEIQAAIKCSKKSGLQIRvrsgghdleglssisdvpFIIVDLINFSEISIDAEAktawvqsgatvGQLNYRIAEKSQnllafpvgtcpgvgvgghfsgggYGALLRKYGVAADHIVDAHMIDAKGEKF
MKPHGLFCPNVISFVSSLLLLFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSgghdleglssisdVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF
MKPHGLFCPNVISFVssllllFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNssyssvlkssIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFpvgtcpgvgvgghfsgggygALLRKYGVAADHIVDAHMIDAKGEKF
****GLFCPNVISFVSSLLLLFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMI*******
******FCPNVISFVSSLLLLFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF
MKPHGLFCPNVISFVSSLLLLFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF
*KPHGLFCPNVISFVSSLLLLFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEK*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKPHGLFCPNVISFVSSLLLLFRGAALAPENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query216 2.2.26 [Sep-21-2011]
A6P6W1 545 Cannabidiolic acid syntha N/A no 0.842 0.333 0.575 4e-49
A6P6W0 545 Cannabidiolic acid syntha N/A no 0.842 0.333 0.575 5e-49
A6P6V9 544 Cannabidiolic acid syntha N/A no 0.842 0.334 0.564 7e-48
Q8GTB6 545 Tetrahydrocannabinolic ac N/A no 0.837 0.332 0.578 4e-47
Q33DQ2 545 Inactive tetrahydrocannab N/A no 0.842 0.333 0.580 4e-47
Q9SVG4 570 Reticuline oxidase-like p no no 0.842 0.319 0.443 1e-36
P93479 535 Reticuline oxidase OS=Pap N/A no 0.745 0.300 0.506 9e-36
P30986 538 Reticuline oxidase OS=Esc N/A no 0.828 0.332 0.472 4e-34
P08159 458 6-hydroxy-D-nicotine oxid N/A no 0.615 0.290 0.318 9e-10
O06997 447 Uncharacterized FAD-linke yes no 0.606 0.293 0.328 3e-06
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function desciption
 Score =  194 bits (493), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 4/186 (2%)

Query: 32  HENFLKCLSL---QSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHV 88
            ENFLKCLS     + T +K++YTQ++  Y S+L S++QNL F++ T  KPL I TP +V
Sbjct: 31  QENFLKCLSQYIPTNVTNAKLVYTQHDQFYMSILNSTVQNLRFTSDTTPKPLVITTPLNV 90

Query: 89  SEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQ 148
           S IQ  I CSKK GLQIR RSGGHD EG+S IS VPF+IVDL N   + ID  ++TAWV+
Sbjct: 91  SHIQGTILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVIVDLRNMHSVKIDVHSQTAWVE 150

Query: 149 SGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHM 208
           SGAT+G++ Y I E ++N L+FP G CP VG GGHFSGGGYGAL+R YG+AAD+I+DAH+
Sbjct: 151 SGATLGEVYYWINENNEN-LSFPAGYCPTVGTGGHFSGGGYGALMRNYGLAADNIIDAHL 209

Query: 209 IDAKGE 214
           ++  G+
Sbjct: 210 VNVDGK 215
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
324022108 530 (S)-tetrahydroprotoberberine oxidase [Be 0.842 0.343 0.559 2e-57
313474921 540 tetrahydroberberine oxidase [Coptis japo 0.842 0.337 0.548 4e-54
224122204 533 predicted protein [Populus trichocarpa] 0.842 0.341 0.563 5e-54
449488560 574 PREDICTED: reticuline oxidase-like prote 0.875 0.329 0.606 1e-53
224056781 533 predicted protein [Populus trichocarpa] 0.851 0.345 0.618 1e-53
224056785 526 predicted protein [Populus trichocarpa] 0.851 0.349 0.618 2e-53
224056811 537 predicted protein [Populus trichocarpa] 0.939 0.378 0.495 2e-53
224122200 545 predicted protein [Populus trichocarpa] 0.842 0.333 0.558 2e-53
449435908 537 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.875 0.351 0.606 3e-53
449519302 531 PREDICTED: reticuline oxidase-like prote 0.962 0.391 0.577 4e-53
>gi|324022108|gb|ADY15026.1| (S)-tetrahydroprotoberberine oxidase [Berberis wilsonae] Back     alignment and taxonomy information
 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 141/184 (76%), Gaps = 2/184 (1%)

Query: 31  NHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSE 90
           N+E+FL+CL L S   S  +YT+N SSY+S+L+S+I+NLVF +PT  KP FI+TP   S 
Sbjct: 29  NYEDFLQCLDLYSQN-SIPVYTRNTSSYTSILESTIKNLVFLSPTTPKPNFIVTPMQESH 87

Query: 91  IQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSG 150
           +Q ++ C +  GLQ+R+RSGGHD EGLS +S+VPF+++DLI+   I++D E  +AWVQ+G
Sbjct: 88  VQTSVICCRMHGLQMRIRSGGHDFEGLSYVSNVPFVVLDLIHLKTINVDIEENSAWVQTG 147

Query: 151 ATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMID 210
           AT+G+L YRIAEK   + AFP G CP VGVGGH SG GYG L+RKYGV+ADH++DA +++
Sbjct: 148 ATIGELYYRIAEKV-GVHAFPAGLCPTVGVGGHISGAGYGVLMRKYGVSADHVIDARIVN 206

Query: 211 AKGE 214
             GE
Sbjct: 207 VDGE 210

Source: Berberis wilsonae

Species: Berberis wilsonae

Genus: Berberis

Family: Berberidaceae

Order: Ranunculales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|313474921|dbj|BAJ40864.1| tetrahydroberberine oxidase [Coptis japonica] Back     alignment and taxonomy information
>gi|224122204|ref|XP_002330565.1| predicted protein [Populus trichocarpa] gi|222872123|gb|EEF09254.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449488560|ref|XP_004158086.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224056781|ref|XP_002299020.1| predicted protein [Populus trichocarpa] gi|222846278|gb|EEE83825.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056785|ref|XP_002299022.1| predicted protein [Populus trichocarpa] gi|224056787|ref|XP_002299023.1| predicted protein [Populus trichocarpa] gi|222846280|gb|EEE83827.1| predicted protein [Populus trichocarpa] gi|222846281|gb|EEE83828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056811|ref|XP_002299035.1| predicted protein [Populus trichocarpa] gi|222846293|gb|EEE83840.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122200|ref|XP_002330564.1| predicted protein [Populus trichocarpa] gi|222872122|gb|EEF09253.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435908|ref|XP_004135736.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519302|ref|XP_004166674.1| PREDICTED: reticuline oxidase-like protein-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
TAIR|locus:2121534 532 AT4G20820 [Arabidopsis thalian 0.842 0.342 0.435 4.8e-39
TAIR|locus:2163411 535 AT5G44410 [Arabidopsis thalian 0.842 0.340 0.410 6.5e-35
TAIR|locus:2163441 533 AT5G44440 [Arabidopsis thalian 0.842 0.341 0.411 9.2e-33
TAIR|locus:2197950 535 AT1G26380 [Arabidopsis thalian 0.875 0.353 0.381 2.2e-32
TAIR|locus:505006170 527 AT1G34575 [Arabidopsis thalian 0.861 0.352 0.377 2.4e-32
TAIR|locus:2204634 526 AT1G30730 [Arabidopsis thalian 0.847 0.347 0.377 4.6e-31
TAIR|locus:2198000 529 AT1G26420 [Arabidopsis thalian 0.875 0.357 0.371 4.8e-31
TAIR|locus:2158720 541 AT5G44380 [Arabidopsis thalian 0.837 0.334 0.391 7.6e-31
TAIR|locus:2197935 530 AT1G26390 [Arabidopsis thalian 0.875 0.356 0.360 8.4e-31
TAIR|locus:2121509 528 AT4G20800 [Arabidopsis thalian 0.842 0.344 0.387 1.8e-30
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 81/186 (43%), Positives = 119/186 (63%)

Query:    31 NHENFLKCLSLQ---SDTISKVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFH 87
             N  +FL+CLSLQ   S+ +SKVI+T N+          IQN  FSAP   KP+ I+TP  
Sbjct:    33 NQSSFLQCLSLQLNDSNIVSKVIHTPNDTSFSSVLASSIQNQRFSAPDVPKPVLILTPVQ 92

Query:    88 VSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWV 147
              S++Q+A+KC+++ G+ IR RSGGHD EGLS ++  PF+I+DL N   I++D + ++ WV
Sbjct:    93 PSDVQSAVKCARRFGIHIRTRSGGHDYEGLSYVTHKPFVILDLRNLRSITVDVDNRSVWV 152

Query:   148 QSGATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAH 207
             Q+GAT+G+L Y I +K++ L AF                     LLRK+G+AADH++DA 
Sbjct:   153 QTGATIGELYYEIGKKNRTL-AFPAGVCPTVGVGGHFSGGGYGTLLRKHGLAADHVIDAR 211

Query:   208 MIDAKG 213
             ++DA+G
Sbjct:   212 VVDARG 217
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197950 AT1G26380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204634 AT1G30730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198000 AT1G26420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121509 AT4G20800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.140.332.1
annotation not avaliable (487 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 2e-30
COG0277 459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 3e-17
TIGR01677 557 TIGR01677, pln_FAD_oxido, plant-specific FAD-depen 0.001
TIGR01678 438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 0.002
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  108 bits (273), Expect = 2e-30
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 79  PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-S 137
           P  ++ P    E+ A ++ + ++GL + VR GG  L G + ++    +++DL   + I  
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 138 IDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYG 197
           ID E  TA V++G T+G L   +A K   LL    G+     VGG  +  G G    +YG
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAK-GLLLGLEPGSGIPGTVGGAIATNGGGYGSERYG 117

Query: 198 VAADHIVDAHMIDAKGE 214
           +  D+++   ++ A GE
Sbjct: 118 LTRDNVLSLEVVLADGE 134

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233524 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 216
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.97
PLN02805 555 D-lactate dehydrogenase [cytochrome] 99.96
PRK11230 499 glycolate oxidase subunit GlcD; Provisional 99.95
TIGR01678 438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.95
PLN02441 525 cytokinin dehydrogenase 99.95
COG0277 459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.94
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 99.94
TIGR00387 413 glcD glycolate oxidase, subunit GlcD. This protein 99.93
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.93
TIGR01679 419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.93
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 99.91
PRK11282 352 glcE glycolate oxidase FAD binding subunit; Provis 99.9
PRK11183 564 D-lactate dehydrogenase; Provisional 99.88
KOG1231 505 consensus Proteins containing the FAD binding doma 99.88
PRK13905 298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK13906 307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
TIGR00179 284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK12436 305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.84
PRK13903 363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.8
PRK14649 295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
KOG1232 511 consensus Proteins containing the FAD binding doma 99.78
PRK14652 302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.78
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.78
KOG1233 613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.74
PRK14653 297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.7
PRK14650 302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.65
COG0812 291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.64
PRK00046 334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.63
PRK14648 354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.61
PRK14651 273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.35
PRK13904 257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.06
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 99.0
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.94
PRK09799 258 putative oxidoreductase; Provisional 96.72
TIGR03312 257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.21
PRK09971 291 xanthine dehydrogenase subunit XdhB; Provisional 96.19
TIGR02963 467 xanthine_xdhA xanthine dehydrogenase, small subuni 95.84
TIGR03195 321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 94.89
TIGR03199 264 pucC xanthine dehydrogenase C subunit. This gene h 94.31
PLN02906 1319 xanthine dehydrogenase 93.13
PLN00192 1344 aldehyde oxidase 92.79
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 91.65
COG1319 284 CoxM Aerobic-type carbon monoxide dehydrogenase, m 87.96
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information 
Probab=99.97  E-value=4e-31  Score=203.58  Aligned_cols=135  Identities=35%  Similarity=0.549  Sum_probs=121.6

Q ss_pred             ccEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee-EEeCCCCeEEecCCCcHHHHH
Q 027960           79 PLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SIDAEAKTAWVQSGATVGQLN  157 (216)
Q Consensus        79 P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i-~id~~~~~v~v~aGv~~~~l~  157 (216)
                      |.+|++|++++||++++++|+++++|++++|+||++.+.+...  ++++|||++|++| ++|+++++++|+||++|.||+
T Consensus         1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~   78 (139)
T PF01565_consen    1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY   78 (139)
T ss_dssp             ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred             CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence            8899999999999999999999999999999999998766533  5999999999995 999999999999999999999


Q ss_pred             HHHHhhCCCceEecCCCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960          158 YRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF  216 (216)
Q Consensus       158 ~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv  216 (216)
                      ++|.++|+ .+.+.++.+...++||++++|++|..++.||...|+|+++++|++||+++
T Consensus        79 ~~l~~~g~-~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~  136 (139)
T PF01565_consen   79 EALAPRGL-MLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVV  136 (139)
T ss_dssp             HHHHHHTE-EESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEE
T ss_pred             cccccccc-cccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEE
Confidence            99999964 22233567778899999999999999999999999999999999999974

One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
3vte_A 518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 9e-41
4dns_A 497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 9e-33
3tsh_A 500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 3e-32
3fw8_A 495 Structure Of Berberine Bridge Enzyme, C166a Variant 9e-30
3fwa_A 497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-29
3d2d_A 538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-29
4ec3_A 519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-29
3gsy_A 519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-29
3fw9_A 495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-29
3fw7_A 498 Structure Of Berberine Bridge Enzyme, H104a Variant 2e-28
2bvf_A 459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 3e-06
2y08_A 530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  162 bits (411), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 4/185 (2%)
Query: 33  ENFLKCLSLQ-SDTIS--KVIYTQNNXXXXXXXXXXIQNLVFSAPTNQKPLFIITPFHVS 89
           ENFLKC S    + ++  K++YTQ++          IQNL F + T  KPL I+TP + S
Sbjct: 5   ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 90  EIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQS 149
            IQA I CSKK GLQIR RSGGHD EG+S IS VPF++VDL N   I ID  ++TAWV++
Sbjct: 65  HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 150 GATVGQLNYRIAEKSQNLLAFXXXXXXXXXXXXXXXXXXXXALLRKYGVAADHIVDAHMI 209
           GAT+G++ Y I EK++N L+F                    AL+R YG+AAD+I+DAH++
Sbjct: 125 GATLGEVYYWINEKNEN-LSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 210 DAKGE 214
           +  G+
Sbjct: 184 NVDGK 188
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 2e-76
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-74
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 9e-66
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 2e-65
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 8e-65
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 9e-63
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 2e-62
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-60
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 3e-50
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-32
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 4e-27
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 4e-15
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 4e-14
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 7e-14
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 7e-12
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-07
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-07
2yvs_A 219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 2e-04
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 3e-04
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 6e-04
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  237 bits (606), Expect = 2e-76
 Identities = 85/181 (46%), Positives = 113/181 (62%), Gaps = 1/181 (0%)

Query: 34  NFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQA 93
           + L CL+        V    ++S ++  L  SIQN +F      KP  II P    E+  
Sbjct: 1   DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60

Query: 94  AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATV 153
            I+C +K    IR+RSGGH  EGLS  SD PFI++DL+N + +SID E++TAWV+SG+T+
Sbjct: 61  TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120

Query: 154 GQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKG 213
           G+L Y I E S   L F  G CP VG GGH SGGG+G + RKYG+AAD++VDA +IDA G
Sbjct: 121 GELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179

Query: 214 E 214
            
Sbjct: 180 A 180
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
3tsh_A 500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 100.0
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
4bby_A 658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.96
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.95
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 99.95
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.94
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 99.94
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.94
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 99.94
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.93
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.93
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.93
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.92
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.91
1hsk_A 326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.9
3tx1_A 322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.89
3i99_A 357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.83
1uxy_A 340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.82
2gqt_A 268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.75
2yvs_A 219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.33
1ffv_C 287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.27
1n62_C 288 Carbon monoxide dehydrogenase medium chain; CODH, 97.79
2w3s_A 462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.58
1t3q_C 288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 97.19
3nvz_B 305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.27
3hrd_C 296 Nicotinate dehydrogenase FAD-subunit; selenium lig 95.98
1rm6_B 324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 94.31
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 89.97
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-40  Score=303.74  Aligned_cols=184  Identities=48%  Similarity=0.900  Sum_probs=170.1

Q ss_pred             CchhhHHHHhhhcCCCCCceEEcCCCCCchHHHhhcccccccCCCCCCCccEEEEeCCHHHHHHHHHHHHhcCCcEEEEc
Q 027960           30 ENHENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRS  109 (216)
Q Consensus        30 ~~~~~~~~cl~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~~~~~~v~g  109 (216)
                      ...++|++||...++  +..|++|+++.|...+.+|++|.||+.....+|.+||+|++++||+++|++|+++++||++||
T Consensus         6 ~~~~~f~~~L~~~~~--~~~v~~~~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~   83 (500)
T 3tsh_A            6 AAKEDFLGCLVKEIP--PRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRS   83 (500)
T ss_dssp             ---CHHHHHHHHHSC--GGGEEETTSTTHHHHHHTTCCCTTTTSTTSCCCSEEECCSSHHHHHHHHHHHHHTTCEEEEES
T ss_pred             ccHHHHHHHHHhhCC--CCEEECCCCCccHHHHHhhhccccccCCCCCCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEc
Confidence            455789999999876  678999999999999999999999999989999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccC--CCCeEEEEccCCceeEEeCCCCeEEecCCCcHHHHHHHHHhhCCCceEecCCCCccccchhccccC
Q 027960          110 GGHDLEGLSSIS--DVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVGVGGHFSGG  187 (216)
Q Consensus       110 gGhs~~g~~~~~--~~~gvvIdl~~~~~i~id~~~~~v~v~aGv~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~gg  187 (216)
                      |||++.|.+...  .+++++|||++||+|++|+++++++||||++|.||+++|.++|+ ++.+++|.|+++|+||++++|
T Consensus        84 gGh~~~g~s~~~~~~~~~~~idl~~~~~v~~d~~~~~~~v~~G~~~~~~~~~l~~~g~-~~~~~~g~~~~vgvgG~~~~g  162 (500)
T 3tsh_A           84 GGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASP-TLAFPAGVCPTIGVGGNFAGG  162 (500)
T ss_dssp             SCCCTTCTTTCCSSSCCEEEEECTTCCCEEEETTTTEEEEETTSBHHHHHHHHHHHCT-TEECCCCSSTTSBHHHHHHTC
T ss_pred             CCcCCCCCcCCCCCcCCeEEEECcCCCCEEECCCCCEEEEccCcCHHHHHHHHHHhCC-CcccCCCCCCCceecCccccc
Confidence            999988765431  13589999999999999999999999999999999999999988 899999999999999999999


Q ss_pred             CCCccccccchHhhheeeEEEECCCCeeC
Q 027960          188 GYGALLRKYGVAADHIVDAHMIDAKGEKF  216 (216)
Q Consensus       188 g~G~~s~~~G~~~D~v~~~~vV~~dG~iv  216 (216)
                      |+|..+++||+.+|+|+++|||++||+|+
T Consensus       163 g~g~~~~~~G~~~d~v~~~~vV~a~G~i~  191 (500)
T 3tsh_A          163 GFGMLLRKYGIAAENVIDVKLVDANGKLH  191 (500)
T ss_dssp             CCCTTHHHHCCGGGGEEEEEEECTTSCEE
T ss_pred             cCCccccccCChhhheeeEEEECCCceEE
Confidence            99999999999999999999999999974
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 216
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 8e-12
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-08
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 3e-07
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 60.0 bits (144), Expect = 8e-12
 Identities = 14/151 (9%), Positives = 40/151 (26%), Gaps = 14/151 (9%)

Query: 78  KPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGL------SSISDVPFIIVDLI 131
              ++ +P    ++      + +   +IR R        L      +    +    +  +
Sbjct: 30  DATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHL 89

Query: 132 NFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFP--------VGTCPGVGVGGH 183
           N   ++      T    +GA++  +   + +        P                    
Sbjct: 90  NGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAAL 149

Query: 184 FSGGGYGALLRKYGVAADHIVDAHMIDAKGE 214
            + G        YG  ++ + +   +   G 
Sbjct: 150 PAVGQTTLPGHTYGSLSNLVTELTAVVWNGT 180
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.97
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.97
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.95
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.94
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.89
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.82
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.77
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.66
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 96.4
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 96.38
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.08
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 95.87
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 95.82
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=2.9e-31  Score=214.65  Aligned_cols=142  Identities=16%  Similarity=0.243  Sum_probs=126.7

Q ss_pred             ccCCCCCCCccEEEEeCCHHHHHHHHHHHHhc---CCcEEEEcCCCCCCCCCccCCCCeEEEEccCCcee------EEeC
Q 027960           70 VFSAPTNQKPLFIITPFHVSEIQAAIKCSKKS---GLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI------SIDA  140 (216)
Q Consensus        70 ~w~~~~~~~P~~vv~P~~~~dv~~~v~~a~~~---~~~~~v~ggGhs~~g~~~~~~~~gvvIdl~~~~~i------~id~  140 (216)
                      .|.......|.+|++|+|++||+++|++|+++   ++|+++||+||++.+.+...+  +++|||++||+|      ++|+
T Consensus        21 d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id~   98 (206)
T d1w1oa2          21 DFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVSA   98 (206)
T ss_dssp             CTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEECT
T ss_pred             CcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEec
Confidence            36555577999999999999999999999997   699999999999988877654  899999999985      6899


Q ss_pred             CCCeEEecCCCcHHHHHHHHHhhCCCceEecC-CCCccccchhccccCCCCccccccchHhhheeeEEEECCCCeeC
Q 027960          141 EAKTAWVQSGATVGQLNYRIAEKSQNLLAFPV-GTCPGVGVGGHFSGGGYGALLRKYGVAADHIVDAHMIDAKGEKF  216 (216)
Q Consensus       141 ~~~~v~v~aGv~~~~l~~~l~~~g~~gl~~~~-g~~~~vgvgG~~~ggg~G~~s~~~G~~~D~v~~~~vV~~dG~iv  216 (216)
                      +..+++||||++|.|++++|.++|   +.++. +....+++||+++++++|..+.+||..+|+|+++|+|++||+++
T Consensus        99 ~~~~v~v~aG~~~~~l~~~l~~~G---l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~  172 (206)
T d1w1oa2          99 DGRYVDAGGEQVWIDVLRASLARG---VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMV  172 (206)
T ss_dssp             TSSEEEEETTCBHHHHHHHHHTTT---EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEE
T ss_pred             CCCEEEEEcceehhhhhhhhhccc---cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEE
Confidence            999999999999999999999995   55544 34467899999999999999999999999999999999999974
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure