Citrus Sinensis ID: 027971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MVSQLYDKTLSFRTPFTPNQKPHKQKRKKSKSSTHRHRHRYRASMAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Secondary Structure (PSIPRED)
cHHHHHHccccccccccccccccHHHHHHccccccccccHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccccccHHHHHHHccccccccccccHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccHHHHHHHHccccccccccEEEEEccc
Coil and Loop (DISEMBL)
mvsqlydktlsfrtpftpnqkphkqkrkkskssthrhrHRYRASMAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMrssqvpdpkivkEGQVIVRARNLraganfispksfrARRVYFCneengllhvpkgqaqnaqaqmfsdpnmAMDMMKKNLSMIIPQTLTFAWVNFFFSgfvaakipfpltQRFRSMLQNGIDLSTVDVSYVSSRSW
Flexible Loop (DISEMBL)
mvsqlydktlsfrtpftpnqkphkqkrkkskssthrhrhryrasmaedlVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLmrssqvpdpkivkEGQVIVRARnlraganfispksfrARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLqngidlstvdvsyvssrsw
Low Complexity Region (SEG)
MVSQLYDKTLSFRTPFTPNQKPhkqkrkkskssthrhrhryrasMAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Disordered region (IsUnstruct)
********************************************MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHV************************KNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSY******
Disordered Region (DISOPRED)
*****YDKTLSFRTP*********************************LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKL***************QVIVRARNLRAGANFISPKSFRARRVYFCNEEN***************************MKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Disordered Region (DISEMBL)
MVSQLYDKTLSFRTPFT**********************RYRASMAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Disordered Region (DISPRO)
******DKTLSFRTPFTPNQK**********************SMAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVP********AQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSQLYDKTLSFRTPFTPNQKPHKQKRKKSKSSTHRHRHRYRASMAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q7SXW4	261	ER membrane protein compl	yes	no	0.787	0.651	0.421	2e-35
Q5R7C1	261	ER membrane protein compl	yes	no	0.773	0.639	0.414	5e-35
Q9P0I2	261	ER membrane protein compl	yes	no	0.773	0.639	0.414	5e-35
Q5U2V8	261	ER membrane protein compl	yes	no	0.773	0.639	0.414	6e-35
Q99KI3	261	ER membrane protein compl	yes	no	0.773	0.639	0.414	6e-35
Q3ZCB8	261	ER membrane protein compl	yes	no	0.773	0.639	0.414	6e-35
Q54YN3	314	ER membrane protein compl	yes	no	0.777	0.535	0.404	1e-29
Q9P787	258	ER membrane protein compl	yes	no	0.787	0.658	0.388	4e-29
B5VLV9	253	ER membrane protein compl	N/A	no	0.777	0.664	0.368	5e-27
B3LQQ2	253	ER membrane protein compl	N/A	no	0.777	0.664	0.368	5e-27

>sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 114/173 (65%), Gaps = 3/173 (1%)

Query: 45  MAE-DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARN 103
           MAE +L+LD+ IR WV++P+  +  L+G++R++VS L++S +    + V + QV++R+R 
Sbjct: 1   MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRV 60

Query: 104 LRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMI 163
           LR    +I  +SF  R+ YF N+E+G     K + +       +DP+M  DMMK N++ +
Sbjct: 61  LRENGKYIPKQSFLMRKFYFNNQEDGFFK--KTKRKVVPPSPMTDPSMLTDMMKGNVTNV 118

Query: 164 IPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           +P  L   W+N+ FSGFV  K+PFPLT RF+ MLQ GI+L ++D S+VSS SW
Sbjct: 119 LPMILIGGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIELLSLDASWVSSASW 171

Danio rerio (taxid: 7955)

>sp|Q5R7C1|EMC3_PONAB ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 48  DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
             +I  +SF  R+ YF N E+G     K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

Pongo abelii (taxid: 9601)

>sp|Q9P0I2|EMC3_HUMAN ER membrane protein complex subunit 3 OS=Homo sapiens GN=EMC3 PE=1 SV=3

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 48  DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
             +I  +SF  R+ YF N E+G     K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

Homo sapiens (taxid: 9606)

>sp|Q5U2V8|EMC3_RAT ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3

 Score =  147 bits (371), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 48  DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
             +I  +SF  R+ YF N E+G     K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

Rattus norvegicus (taxid: 10116)

>sp|Q99KI3|EMC3_MOUSE ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=2 SV=3

 Score =  147 bits (371), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 48  DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
             +I  +SF  R+ YF N E+G     K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

Mus musculus (taxid: 10090)

>sp|Q3ZCB8|EMC3_BOVIN ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3

 Score =  147 bits (370), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 48  DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
           +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
             +I  +SF  R+ YF N E+G     K + +       +DP M  DMMK N++ ++P  
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPVTDPTMLTDMMKGNVTNVLPMI 122

Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

Bos taurus (taxid: 9913)

>sp|Q54YN3|EMC3_DICDI ER membrane protein complex subunit 3 OS=Dictyostelium discoideum GN=emc3 PE=3 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 15/183 (8%)

Query: 49  LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMR--SSQVPDPKIVKEGQVIVRARNLRA 106
           +VLD  IR+WV+IP+ +V+ ++  L+  +S++M+  S +  D +   + Q I R R L +
Sbjct: 6   IVLDVEIRNWVVIPILIVLFIVSALKLNISRIMQINSGKPQDVEKTMQMQTINRVRRLVS 65

Query: 107 GANFISPKSFRARRVYFCNEEN-----GLLH--VPKGQAQNAQA-----QMFSDPNMAMD 154
             N I  KSF  R+ Y C         G+L    P  +  N         MF+DP+   D
Sbjct: 66  FYNRIPQKSFFIRKAYLCGTTGSKTNKGILSSIAPTQEDSNPMNMMFANSMFTDPSGITD 125

Query: 155 MMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIP-FPLTQRFRSMLQNGIDLSTVDVSYVSS 213
           M+K N+  +IPQ    +WVN FFSGFVA K+P FPLT RF++ LQ GI++ ++DVSYVSS
Sbjct: 126 MLKGNIMHLIPQVTMMSWVNHFFSGFVACKLPFFPLTIRFKTFLQRGIEMGSLDVSYVSS 185

Query: 214 RSW 216
            SW
Sbjct: 186 LSW 188

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P787|YNY3_SCHPO ER membrane protein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.03 PE=3 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)

Query: 47  EDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSS-QVPDPKIVKEGQVIVRARNLR 105
           + L+LD A+R+WVL+P+  VM+LIGILR+  + L++SS +    + ++E +++ RA  LR
Sbjct: 2   QKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYALR 61

Query: 106 AGANFISPKSFRARRVYFCN--EENGLLHVPKGQAQNAQAQMFSDPNMA--MDMMKKNLS 161
           A +N + P+S  AR+ +     +    L      A  A   +  D  +   M+ MK N+ 
Sbjct: 62  ACSNSLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAANPLMDDKTLEGLMESMKGNML 121

Query: 162 MIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           M++PQT+   W+N FFSGF+  K+PFPLT RF+S+ Q+G+    +DV +VSS SW
Sbjct: 122 MVVPQTIIMTWINEFFSGFILLKLPFPLTLRFKSIFQSGVATQDLDVQWVSSISW 176

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|B5VLV9|EMC3_YEAS6 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AIM27 PE=3 SV=2

 Score =  120 bits (302), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 11/179 (6%)

Query: 49  LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLR 105
           ++LD  ++ WVL+P+S+VMVL G+L+ ++  L+  S   +  P++ + E Q +  A+ L 
Sbjct: 1   MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLI 60

Query: 106 AGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNA-QAQM----FSDPNMA---MDMMK 157
                +S  +F A++ +   +     H+ K + Q   QA      F+DPNM+   M+M K
Sbjct: 61  GNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAK 120

Query: 158 KNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
            N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI    +DV +VSS SW
Sbjct: 121 GNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISW 179

The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

>sp|B3LQQ2|EMC3_YEAS1 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=AIM27 PE=3 SV=2

 Score =  120 bits (302), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 11/179 (6%)

Query: 49  LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLR 105
           ++LD  ++ WVL+P+S+VMVL G+L+ ++  L+  S   +  P++ + E Q +  A+ L 
Sbjct: 1   MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLI 60

Query: 106 AGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNA-QAQM----FSDPNMA---MDMMK 157
                +S  +F A++ +   +     H+ K + Q   QA      F+DPNM+   M+M K
Sbjct: 61  GNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAK 120

Query: 158 KNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
            N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI    +DV +VSS SW
Sbjct: 121 GNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISW 179

The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
225469994	246	PREDICTED: transmembrane protein 111 [Vi	0.796	0.699	0.947	2e-90
255559070	246	Protein pob, putative [Ricinus communis]	0.796	0.699	0.936	2e-89
356566401	246	PREDICTED: transmembrane protein 111-lik	0.796	0.699	0.930	4e-89
224139538	246	predicted protein [Populus trichocarpa]	0.796	0.699	0.924	9e-89
388496608	246	unknown [Lotus japonicus]	0.796	0.699	0.924	1e-88
388494522	246	unknown [Lotus japonicus]	0.796	0.699	0.924	1e-88
356527163	246	PREDICTED: transmembrane protein 111-lik	0.796	0.699	0.924	2e-88
224086401	246	predicted protein [Populus trichocarpa]	0.796	0.699	0.912	3e-88
255645473	246	unknown [Glycine max]	0.796	0.699	0.918	4e-88
297803884	246	hypothetical protein ARALYDRAFT_914375 [	0.796	0.699	0.924	6e-88

>gi|225469994|ref|XP_002277989.1| PREDICTED: transmembrane protein 111 [Vitis vinifera] gi|359495548|ref|XP_003635017.1| PREDICTED: transmembrane protein 111-like [Vitis vinifera] gi|147816093|emb|CAN72892.1| hypothetical protein VITISV_022312 [Vitis vinifera]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/172 (94%), Positives = 167/172 (97%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLMRSSQVPD KIV+EGQVIVRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSQVPDSKIVREGQVIVRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           RA AN+I  KSFRAR+VYF NEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RAAANYIPAKSFRARKVYFNNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559070|ref|XP_002520557.1| Protein pob, putative [Ricinus communis] gi|223540217|gb|EEF41790.1| Protein pob, putative [Ricinus communis]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/172 (93%), Positives = 165/172 (95%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLMRS Q PD KIVKEGQVI+RAR L
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSYQTPDAKIVKEGQVILRARYL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           R+GANFI PKSFRARR YF NEE+GLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RSGANFIPPKSFRARRAYFSNEEDGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566401|ref|XP_003551420.1| PREDICTED: transmembrane protein 111-like [Glycine max]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 160/172 (93%), Positives = 164/172 (95%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLM SSQ PD KIVKEGQVIVRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMHSSQTPDAKIVKEGQVIVRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           RAGANFI  K+FRAR++YFCNEENGLL VPKGQ QN QAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RAGANFIPSKAFRARKIYFCNEENGLLFVPKGQGQNPQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139538|ref|XP_002323159.1| predicted protein [Populus trichocarpa] gi|222867789|gb|EEF04920.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (850), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 163/172 (94%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPL+VVM+LIGILRYFVSKLM+S Q PD KIVKEGQV+VRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLTVVMILIGILRYFVSKLMQSQQTPDAKIVKEGQVVVRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           RAGANFI  KSFRARR YF NEENGLLHVPKGQ QN QAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RAGANFIPAKSFRARRAYFSNEENGLLHVPKGQGQNPQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496608|gb|AFK36370.1| unknown [Lotus japonicus]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 164/172 (95%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLMRSSQ PD KIVKEGQVI+RARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSQTPDAKIVKEGQVILRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           R GANFI  K+FRAR+VY+CNEE GLL VPKGQAQN QAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RTGANFIPSKAFRARKVYYCNEEKGLLFVPKGQAQNPQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494522|gb|AFK35327.1| unknown [Lotus japonicus]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 164/172 (95%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLMRSSQ PD KIVKEGQVI+RARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSQTPDAKIVKEGQVILRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           R GANFI  K+FRAR+VY+CNEE GLL VPKGQAQN QAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RTGANFIPSKAFRARKVYYCNEEKGLLFVPKGQAQNPQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527163|ref|XP_003532182.1| PREDICTED: transmembrane protein 111-like [Glycine max]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 163/172 (94%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLM SSQ PD KIVKEGQVIVRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMHSSQTPDAKIVKEGQVIVRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           RA ANFI  K+FRAR++YFCNEENGLL VPKGQ QN QAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RAAANFIPSKAFRARKIYFCNEENGLLFVPKGQGQNPQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086401|ref|XP_002307881.1| predicted protein [Populus trichocarpa] gi|222853857|gb|EEE91404.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/172 (91%), Positives = 163/172 (94%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPL+VVM+LIGILRYFVSKLMRS Q PD K+V+EGQV++RARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLTVVMILIGILRYFVSKLMRSQQNPDAKVVREGQVVIRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           RAGANFI  KSFRARR YF NEENGLLHVPKGQ QN QAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  RAGANFIPSKSFRARRAYFSNEENGLLHVPKGQGQNPQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645473|gb|ACU23232.1| unknown [Glycine max]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/172 (91%), Positives = 163/172 (94%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIG+LRYFVSKLM SSQ PD KIVKEGQVIVRARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMHSSQTPDAKIVKEGQVIVRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           RAGANFI  K+FRAR++YFCNEENGLL VPKGQ QN QAQMFSDPNMAM+MMKKNLSMII
Sbjct: 61  RAGANFIPSKAFRARKIYFCNEENGLLFVPKGQGQNPQAQMFSDPNMAMNMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYV SRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVGSRSW 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803884|ref|XP_002869826.1| hypothetical protein ARALYDRAFT_914375 [Arabidopsis lyrata subsp. lyrata] gi|297315662|gb|EFH46085.1| hypothetical protein ARALYDRAFT_914375 [Arabidopsis lyrata subsp. lyrata]

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 163/172 (94%)

Query: 45  MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
           MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSS  PD K+VKEGQV++RARNL
Sbjct: 1   MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSPTPDAKMVKEGQVVIRARNL 60

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           +AGANFI PKSFRARR YF NEENGLLHVPK Q QN QAQMFSDPNMAMDMMKKNLSMII
Sbjct: 61  KAGANFIPPKSFRARRFYFSNEENGLLHVPKDQTQNPQAQMFSDPNMAMDMMKKNLSMII 120

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct: 121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2135645	246	AT4G12590 "AT4G12590" [Arabido	0.796	0.699	0.912	2.2e-80
WB|WBGene00013378	234	emc-3 [Caenorhabditis elegans	0.773	0.713	0.431	1.1e-34
ZFIN|ZDB-GENE-040426-2904	261	emc3 "ER membrane protein comp	0.787	0.651	0.421	5.8e-34
UNIPROTKB|E2RMQ3	225	EMC3 "Uncharacterized protein"	0.773	0.742	0.414	2e-33
UNIPROTKB|J9P0V4	223	EMC3 "Uncharacterized protein"	0.773	0.748	0.414	2e-33
UNIPROTKB|Q9P0I2	261	EMC3 "ER membrane protein comp	0.773	0.639	0.414	2e-33
UNIPROTKB|F1SQC6	261	EMC3 "Uncharacterized protein"	0.773	0.639	0.414	2e-33
UNIPROTKB|Q5R7C1	261	EMC3 "ER membrane protein comp	0.773	0.639	0.414	2e-33
MGI|MGI:1913337	261	Emc3 "ER membrane protein comp	0.773	0.639	0.414	2e-33
RGD|1311566	261	Emc3 "ER membrane protein comp	0.773	0.639	0.414	2e-33

TAIR|locus:2135645 AT4G12590 "AT4G12590" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 157/172 (91%), Positives = 163/172 (94%)

Query:    45 MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNL 104
             MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRS+  PD K+VKEGQV++RARNL
Sbjct:     1 MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSTPTPDAKMVKEGQVVIRARNL 60

Query:   105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
             + GANFI PKSFRARR YF NEENGLLHVPKG+AQN QA MFSDPNMAMDMMKKNLSMII
Sbjct:    61 KVGANFIPPKSFRARRFYFSNEENGLLHVPKGEAQNPQAAMFSDPNMAMDMMKKNLSMII 120

Query:   165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW
Sbjct:   121 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

WB|WBGene00013378 emc-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/169 (43%), Positives = 109/169 (64%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             DL+LD AIR WV +P+ V+   IGILR++VS L+ + +  + + + +GQ ++RAR LR  
Sbjct:     3 DLLLDPAIRTWVFLPIVVITFFIGILRHYVSLLLMNKKKVELENIADGQYLLRARLLREN 62

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               F+   SF ARR Y C EE G L   K Q + A+     DP+   +M+K N+  +IP  
Sbjct:    63 GRFLPKTSFNARRQYLCAEETGYLS--KAQQRPAKGPNPMDPSQMTEMLKGNMMNMIPMI 120

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             +   W+N+ FSGFV  ++PFPLT +F++MLQ G+DL ++D ++VSS SW
Sbjct:   121 VVGGWINWTFSGFVTTRVPFPLTLKFKAMLQRGVDLVSLDSAWVSSASW 169

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2904 emc3 "ER membrane protein complex subunit 3" [Danio rerio (taxid:7955)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 73/173 (42%), Positives = 113/173 (65%)

Query:    45 MAE-DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARN 103
             MAE +L+LD+ IR WV++P+  +  L+G++R++VS L++S +    + V + QV++R+R 
Sbjct:     1 MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRV 60

Query:   104 LRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMI 163
             LR    +I  +SF  R+ YF N+E+G     K +         +DP+M  DMMK N++ +
Sbjct:    61 LRENGKYIPKQSFLMRKFYFNNQEDGFFKKTKRKV--VPPSPMTDPSMLTDMMKGNVTNV 118

Query:   164 IPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             +P  L   W+N+ FSGFV  K+PFPLT RF+ MLQ GI+L ++D S+VSS SW
Sbjct:   119 LPMILIGGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIELLSLDASWVSSASW 171

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|E2RMQ3 EMC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 70/169 (41%), Positives = 107/169 (63%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct:     5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  
Sbjct:    65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct:   123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|J9P0V4 EMC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 70/169 (41%), Positives = 107/169 (63%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct:     5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  
Sbjct:    65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct:   123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9P0I2 EMC3 "ER membrane protein complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 70/169 (41%), Positives = 107/169 (63%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct:     5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  
Sbjct:    65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct:   123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|F1SQC6 EMC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 70/169 (41%), Positives = 107/169 (63%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct:     5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  
Sbjct:    65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct:   123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q5R7C1 EMC3 "ER membrane protein complex subunit 3" [Pongo abelii (taxid:9601)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 70/169 (41%), Positives = 107/169 (63%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct:     5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  
Sbjct:    65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct:   123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

GO:0016021 "integral to membrane" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

MGI|MGI:1913337 Emc3 "ER membrane protein complex subunit 3" [Mus musculus (taxid:10090)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 70/169 (41%), Positives = 107/169 (63%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct:     5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  
Sbjct:    65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct:   123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=ISO

RGD|1311566 Emc3 "ER membrane protein complex subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 70/169 (41%), Positives = 107/169 (63%)

Query:    48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
             +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR  
Sbjct:     5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query:   108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
               +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  
Sbjct:    65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMI 122

Query:   168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
             L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SW
Sbjct:   123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASW 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISO;ISS

GO:0072546 "ER membrane protein complex" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam01956	168	pfam01956, DUF106, Integral membrane protein DUF10	4e-42

>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106

 Score =  139 bits (353), Expect = 4e-42
 Identities = 70/172 (40%), Positives = 98/172 (56%), Gaps = 27/172 (15%)

Query: 48  DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVP---DPKIVKEGQVIVRARNL 104
           DL+LD  IR   L+P+ +V++LIGILR  +S+L++   +    +    +E ++  RAR L
Sbjct: 1   DLLLDPLIRL-WLLPIFIVILLIGILRGLLSELLQWLLIDRKMEKYQKREKEIQKRAREL 59

Query: 105 RAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMII 164
           R   + +SPK F  R+                     + Q      M MDMMK N +++I
Sbjct: 60  RKNGDKLSPKKFEKRQEELM-----------------EDQK----EMMMDMMKPNFAIMI 98

Query: 165 PQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSW 216
           PQ L F W+N FFSGFV AK+PFPLT RF+ MLQ G+D   +DV+ VSS SW
Sbjct: 99  PQILIFGWINSFFSGFVVAKLPFPLTGRFKGMLQRGVD--GLDVTDVSSISW 148

This archaebacterial protein family has no known function. Members are predicted to be integral membrane proteins. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG3188	246	consensus Uncharacterized conserved protein [Funct	100.0
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	100.0
KOG3312	186	consensus Predicted membrane protein [Function unk	91.05

>KOG3188 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-81  Score=544.91  Aligned_cols=172  Identities=56%  Similarity=0.940  Sum_probs=162.6

Q ss_pred             chhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhhhhhHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 027971           45 MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFC  124 (216)
Q Consensus        45 m~~~LlLDp~IR~WVllPI~ivm~LvGiLRhyvt~Ll~s~k~~~~~~vre~q~L~Ra~~LR~n~~~L~~~sF~~Rk~yf~  124 (216)
                      |+.+|+|||+||+||||||+|||||+|||||||++|+++.|+.+.++|+|+|+|+||++||+||++||++||++||+|||
T Consensus         1 Mtp~LLLD~aiR~WVlLPI~ivm~liGilRhyvsiLl~s~kk~~~~~v~e~q~l~rAr~Lr~ng~~l~~~Sf~aRk~yl~   80 (246)
T KOG3188|consen    1 MTPDLLLDPAIRYWVLLPIVIVMFLIGILRHYVSILLQSSKKLEQEQVKEGQYLIRARLLRENGNFLPPQSFAARKEYLN   80 (246)
T ss_pred             CchhhccChHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHhh
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcccccCCCCcchhhhcCCCChhHHHHHHHHhhhhhhhHHHHHHHHHHhhhcceeeeccCCCchhhHHHHhcCCCCC
Q 027971          125 NEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS  204 (216)
Q Consensus       125 ~~~~G~~~~~~~~~~~~~~npmtDP~~Mm~MmKgNm~~~iPq~vim~WIN~FFSGFVv~KlPFPLT~rFK~MLQrGI~l~  204 (216)
                      ++|+|++.+.+.+..+++++|++||+||||||||||.|+|||++|||||||||||||++|+|||||.|||+|||+||++.
T Consensus        81 ~~e~g~l~~~k~~~~~~~~~~~~DpsmlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~MlQ~Gi~l~  160 (246)
T KOG3188|consen   81 NEETGYLKKAKQQAAGEAPPPFNDPSMLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSMLQRGIDLQ  160 (246)
T ss_pred             cccccccccccccccCCCCCCCCCHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHcCchhh
Confidence            99999444444444445568899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCC
Q 027971          205 TVDVSYVSSRSW  216 (216)
Q Consensus       205 dLDvswVSSlSW  216 (216)
                      ||||+||||+||
T Consensus       161 ~LDv~wVSS~SW  172 (246)
T KOG3188|consen  161 DLDVSWVSSASW  172 (246)
T ss_pred             hcchhHhhhhHH
Confidence            999999999999

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=100.00  E-value=2.7e-43  Score=288.36  Aligned_cols=145  Identities=46%  Similarity=0.805  Sum_probs=137.3

Q ss_pred             hhhcccccccchHHHHHHHHHHHHHHHHHHHHhhcCC---CCCChhhhhhhhHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 027971           48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSS---QVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFC  124 (216)
Q Consensus        48 ~LlLDp~IR~WVllPI~ivm~LvGiLRhyvt~Ll~s~---k~~~~~~vre~q~L~Ra~~LR~n~~~L~~~sF~~Rk~yf~  124 (216)
                      |++|||.|| ||++||+++++++|++|||++.+++..   ++.+..+.+++++..|++.+++|++.+++++|+.|+++++
T Consensus         1 d~~ldp~i~-~~~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~   79 (168)
T PF01956_consen    1 DLVLDPLIR-WVLLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELM   79 (168)
T ss_pred             CccccchHh-hhhcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence            689999999 999999999999999999999999993   4467889999999999999999999999999999999998


Q ss_pred             hcCCcccccCCCCcchhhhcCCCChhHHHHHHHHhhhhhhhHHHHHHHHHHhhhcceeeeccCCCchhhHHHHhcCCCCC
Q 027971          125 NEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS  204 (216)
Q Consensus       125 ~~~~G~~~~~~~~~~~~~~npmtDP~~Mm~MmKgNm~~~iPq~vim~WIN~FFSGFVv~KlPFPLT~rFK~MLQrGI~l~  204 (216)
                      +++.|                     +|++|||+|+.++||+++||+|||+||+||+++|+|||||.+||.|+|||+  +
T Consensus        80 ~~~~~---------------------~~~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl--~  136 (168)
T PF01956_consen   80 EKQQE---------------------MMMMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGL--E  136 (168)
T ss_pred             HHHHH---------------------HHHHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCC--C
Confidence            75444                     188999999999999999999999999999999999999999999999999  9


Q ss_pred             CCCccccccCCC
Q 027971          205 TVDVSYVSSRSW  216 (216)
Q Consensus       205 dLDvswVSSlSW  216 (216)
                      ++|++||||+||
T Consensus       137 ~~d~~~~s~i~w  148 (168)
T PF01956_consen  137 GLDVSYVSSISW  148 (168)
T ss_pred             CCcccHhHHHHH
Confidence            999999999998

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>KOG3312 consensus Predicted membrane protein [Function unknown]

Probab=91.05  E-value=0.24  Score=42.80  Aligned_cols=54  Identities=26%  Similarity=0.471  Sum_probs=38.3

Q ss_pred             HHHhhhhhhhHHHHHHHHHHhhhcceeeeccC-CCchhhHHHHhcCCCCCCC-Cccc
Q 027971          156 MKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPF-PLTQRFRSMLQNGIDLSTV-DVSY  210 (216)
Q Consensus       156 mKgNm~~~iPq~vim~WIN~FFSGFVv~KlPF-PLT~rFK~MLQrGI~l~dL-Dvsw  210 (216)
                      ||.-.+--+--+++++-.|..|-|=|++|+|| |++. -..|--||+--.|. |+|+
T Consensus        88 mKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~-iqglSHRnL~GdD~TDCSf  143 (186)
T KOG3312|consen   88 MKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISI-IQGLSHRNLKGDDMTDCSF  143 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHH-HhcccccCCCCCCccchHH
Confidence            44444445556888999999999999999999 7775 34555566654443 6654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00