Citrus Sinensis ID: 027975

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
MAMVFFALAVFLFLGLNLDESSPSSASAASSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
cEEEEHHHHHHHHHHHcccccccccccccccccccEEEccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccccEEEEccccccccccccEEccccEEEEEEcccccEEEEcccccccccccEEEEEcccccccccccEEEEEEcccEEEEEccEEEEEEccccEEEEEccccccccccccEEEEEEccccccccEEEEEcccccccccc
cHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccEEEEEEcccccEEcccccccccccccEEEEEEccccccccEEEEEcccccccccccEcccccEEEEEEccccccccccccccccccccEEEEEccccccccccEEEEEEEccccEEEEEEEEEEEEEcccEEEEEccccccccccccEEEEEccccccccEEEEEccccccccccc
MAMVFFALAVFLFLGlnldesspssasaassetVEITYGTVLKLMHEKtkfrlhshevpygsgsgqqsvtgfpdvddansywivkpilgasakqgdtiksgtIIRLQHMRTRKWLhshlhaspisgnleiscfggeeesdtgdYWRVMIEGSGKTWRQDQRIRLqhvdtggylhshpkkyqriaggqqevcgvrekradnvwlaaegvylpvtesk
MAMVFFALAVFLFLGLNLDESSpssasaassetvEITYGTVLKLMHEKTKFRLHSHevpygsgsgqqsVTGFPDVDDANSYWIVKPIlgasakqgdtikSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGsgktwrqdQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRAdnvwlaaegvylpvtesk
mamvffalavflflGLNLDEsspssasaassETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
**MVFFALAVFLFLGLNL***************VEITYGTVLKLMHEKTKFRLHSH*************TGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPV****
MAMVFFALAVFLFLGLNLD***************EITYGTVLKLMHEKTKFRLHS*EV***********TGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAE**********
MAMVFFALAVFLFLGLNLD*************TVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
MAMVFFALAVFLFLGLNLDESSPSSASAASSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLP*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAMVFFALAVFLFLGLNLDESSPSSASAASSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query216 2.2.26 [Sep-21-2011]
Q93ZE8218 Stromal cell-derived fact yes no 0.995 0.986 0.75 1e-97
Q54P23212 Stromal cell-derived fact yes no 0.939 0.957 0.423 2e-36
Q9DCT5211 Stromal cell-derived fact yes no 0.865 0.886 0.436 7e-36
Q3SZ45211 Stromal cell-derived fact yes no 0.916 0.938 0.399 1e-35
Q99470211 Stromal cell-derived fact yes no 0.865 0.886 0.442 1e-35
Q9ESP1221 Stromal cell-derived fact no no 0.851 0.832 0.413 1e-33
Q3T083221 Stromal cell-derived fact no no 0.837 0.819 0.415 2e-33
Q9HCN8221 Stromal cell-derived fact no no 0.837 0.819 0.409 2e-32
P52867 743 Dolichyl-phosphate-mannos yes no 0.763 0.222 0.368 7e-17
O74189 877 Dolichyl-phosphate-mannos N/A no 0.847 0.208 0.338 9e-15
>sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=1 SV=1 Back     alignment and function desciption
 Score =  355 bits (911), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 162/216 (75%), Positives = 190/216 (87%), Gaps = 1/216 (0%)

Query: 1   MAMVFFALAVFLFLGLNLDESSPSSASAAS-SETVEITYGTVLKLMHEKTKFRLHSHEVP 59
           MA+ FF LA+FL+L L+ D    S+++AAS  E VEITYG+ +KLMHEKTKFRLHSH+VP
Sbjct: 1   MALGFFCLAIFLYLSLDPDSGYTSASAAASGKEGVEITYGSAIKLMHEKTKFRLHSHDVP 60

Query: 60  YGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHL 119
           YGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG  IRLQHM+TRKWLHSHL
Sbjct: 61  YGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHL 120

Query: 120 HASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKK 179
           HASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RLQH+DT GYLHSH KK
Sbjct: 121 HASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKK 180

Query: 180 YQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTES 215
           YQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES
Sbjct: 181 YQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216

Arabidopsis thaliana (taxid: 3702)
>sp|Q54P23|SDF2_DICDI Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1 Back     alignment and function description
>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1 Back     alignment and function description
>sp|Q3SZ45|SDF2_BOVIN Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1 Back     alignment and function description
>sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2 Back     alignment and function description
>sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2 Back     alignment and function description
>sp|Q3T083|SDF2L_BOVIN Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2 Back     alignment and function description
>sp|P52867|PMT5_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMT5 PE=1 SV=1 Back     alignment and function description
>sp|O74189|PMT1_CANAL Dolichyl-phosphate-mannose--protein mannosyltransferase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PMT1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
255548764219 Stromal cell-derived factor 2 precursor, 1.0 0.986 0.840 1e-102
359806084216 uncharacterized protein LOC100792538 pre 1.0 1.0 0.847 1e-101
118482861216 unknown [Populus trichocarpa] 1.0 1.0 0.824 1e-101
357466039223 Stromal cell-derived factor 2-like prote 1.0 0.968 0.827 1e-100
255648004222 unknown [Glycine max] 1.0 0.972 0.810 1e-100
224092582216 predicted protein [Populus trichocarpa] 1.0 1.0 0.819 1e-100
225465498214 PREDICTED: stromal cell-derived factor 2 0.990 1.0 0.786 1e-99
225430352216 PREDICTED: stromal cell-derived factor 2 1.0 1.0 0.824 1e-99
224143291220 predicted protein [Populus trichocarpa] 1.0 0.981 0.790 4e-99
388495320223 unknown [Medicago truncatula] 1.0 0.968 0.813 1e-98
>gi|255548764|ref|XP_002515438.1| Stromal cell-derived factor 2 precursor, putative [Ricinus communis] gi|223545382|gb|EEF46887.1| Stromal cell-derived factor 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/219 (84%), Positives = 203/219 (92%), Gaps = 3/219 (1%)

Query: 1   MAMVFFALAVFLFLGLNLD---ESSPSSASAASSETVEITYGTVLKLMHEKTKFRLHSHE 57
           MA+ FF L++FLFL L+LD    +S S+A+++SSE+VEITYGTVLKLMHE+TKFRLHSH+
Sbjct: 1   MAIAFFVLSIFLFLNLDLDYGSFTSASAATSSSSESVEITYGTVLKLMHERTKFRLHSHD 60

Query: 58  VPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHS 117
           VPYGSGSGQQSVTGFP+VDD+NSYWIV+P     AKQGD IKSGTIIRLQHMRTRKWLHS
Sbjct: 61  VPYGSGSGQQSVTGFPNVDDSNSYWIVRPQPDTGAKQGDAIKSGTIIRLQHMRTRKWLHS 120

Query: 118 HLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHP 177
           HLHASPISGNLE+SCFGGE +SDTGDYWR+MIEGSGKTW+QDQRIRLQHVDTGGYLHSH 
Sbjct: 121 HLHASPISGNLEVSCFGGESDSDTGDYWRLMIEGSGKTWKQDQRIRLQHVDTGGYLHSHD 180

Query: 178 KKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 216
           KKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK
Sbjct: 181 KKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359806084|ref|NP_001241440.1| uncharacterized protein LOC100792538 precursor [Glycine max] gi|255644896|gb|ACU22948.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|118482861|gb|ABK93345.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466039|ref|XP_003603304.1| Stromal cell-derived factor 2-like protein [Medicago truncatula] gi|355492352|gb|AES73555.1| Stromal cell-derived factor 2-like protein [Medicago truncatula] gi|388522119|gb|AFK49121.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255648004|gb|ACU24458.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224092582|ref|XP_002309671.1| predicted protein [Populus trichocarpa] gi|222855647|gb|EEE93194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225465498|ref|XP_002271807.1| PREDICTED: stromal cell-derived factor 2-like protein [Vitis vinifera] gi|297745088|emb|CBI38927.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225430352|ref|XP_002285288.1| PREDICTED: stromal cell-derived factor 2-like protein [Vitis vinifera] gi|296082069|emb|CBI21074.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224143291|ref|XP_002324906.1| predicted protein [Populus trichocarpa] gi|118488737|gb|ABK96179.1| unknown [Populus trichocarpa] gi|222866340|gb|EEF03471.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388495320|gb|AFK35726.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
UNIPROTKB|B9RNW9219 RCOM_0921720 "Stromal cell-der 0.856 0.844 0.902 5e-92
TAIR|locus:2040199218 SDF2 "AT2G25110" [Arabidopsis 0.851 0.844 0.798 3.4e-84
DICTYBASE|DDB_G0284847212 DDB_G0284847 "MIR domain-conta 0.805 0.820 0.502 3.2e-42
FB|FBgn0037312216 CG11999 [Drosophila melanogast 0.819 0.819 0.430 1.4e-39
UNIPROTKB|Q5ZIB0211 SDF2L1 "Uncharacterized protei 0.819 0.838 0.438 2.4e-35
MGI|MGI:108019211 Sdf2 "stromal cell derived fac 0.819 0.838 0.435 2.4e-35
WB|WBGene00020038206 R12E2.13 [Caenorhabditis elega 0.800 0.839 0.437 3.1e-35
UNIPROTKB|Q99470211 SDF2 "Stromal cell-derived fac 0.819 0.838 0.435 4e-35
RGD|1307274211 Sdf2 "stromal cell derived fac 0.819 0.838 0.435 4e-35
UNIPROTKB|Q3SZ45211 SDF2 "Stromal cell-derived fac 0.819 0.838 0.430 6.5e-35
UNIPROTKB|B9RNW9 RCOM_0921720 "Stromal cell-derived factor 2, putative" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 167/185 (90%), Positives = 177/185 (95%)

Query:    32 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGAS 91
             E+VEITYGTVLKLMHE+TKFRLHSH+VPYGSGSGQQSVTGFP+VDD+NSYWIV+P     
Sbjct:    35 ESVEITYGTVLKLMHERTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPQPDTG 94

Query:    92 AKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEG 151
             AKQGD IKSGTIIRLQHMRTRKWLHSHLHASPISGNLE+SCFGGE +SDTGDYWR+MIEG
Sbjct:    95 AKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESDSDTGDYWRLMIEG 154

Query:   152 SGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLP 211
             SGKTW+QDQRIRLQHVDTGGYLHSH KKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLP
Sbjct:   155 SGKTWKQDQRIRLQHVDTGGYLHSHDKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLP 214

Query:   212 VTESK 216
             VTESK
Sbjct:   215 VTESK 219
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2040199 SDF2 "AT2G25110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284847 DDB_G0284847 "MIR domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037312 CG11999 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIB0 SDF2L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:108019 Sdf2 "stromal cell derived factor 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00020038 R12E2.13 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q99470 SDF2 "Stromal cell-derived factor 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307274 Sdf2 "stromal cell derived factor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZ45 SDF2 "Stromal cell-derived factor 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DCT5SDF2_MOUSENo assigned EC number0.43680.86570.8862yesno
Q93ZE8SDF2_ARATHNo assigned EC number0.750.99530.9862yesno
Q54P23SDF2_DICDINo assigned EC number0.42300.93980.9575yesno
Q3SZ45SDF2_BOVINNo assigned EC number0.39900.91660.9383yesno
Q99470SDF2_HUMANNo assigned EC number0.44210.86570.8862yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
COG1928 699 COG1928, PMT1, Dolichyl-phosphate-mannose--protein 7e-28
pfam02815189 pfam02815, MIR, MIR domain 9e-17
smart0047257 smart00472, MIR, Domain in ryanodine and inositol 1e-11
smart0047257 smart00472, MIR, Domain in ryanodine and inositol 7e-08
smart0047257 smart00472, MIR, Domain in ryanodine and inositol 5e-07
pfam02815189 pfam02815, MIR, MIR domain 9e-07
COG1928 699 COG1928, PMT1, Dolichyl-phosphate-mannose--protein 3e-06
COG1928 699 COG1928, PMT1, Dolichyl-phosphate-mannose--protein 3e-04
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  110 bits (276), Expect = 7e-28
 Identities = 56/163 (34%), Positives = 77/163 (47%), Gaps = 13/163 (7%)

Query: 53  LHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTR 112
           LHSH   Y  GS QQ VTG+    DAN+ W+++     +A Q + +K G  +RL+H  T 
Sbjct: 320 LHSHNQLYPEGSEQQQVTGYGH-KDANNEWLIEL-SDENATQIEPLKDGQSVRLRHKYTG 377

Query: 113 KWLHSHLHASPISGN-LEISCFGGEEESDTGDYWRVMI--------EGSGKTWRQDQRIR 163
           K LH H    P+SGN  E+S +G   E D  D W + I        +        + + R
Sbjct: 378 KNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPL--ETKFR 435

Query: 164 LQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAE 206
           L HV TG YL SH  K       Q+EV   +++     W   E
Sbjct: 436 LYHVLTGCYLASHDLKLPEWGFSQREVLCAKDRDPSTTWNIEE 478

Length = 699
>gnl|CDD|217239 pfam02815, MIR, MIR domain Back     alignment and domain information
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>gnl|CDD|217239 pfam02815, MIR, MIR domain Back     alignment and domain information
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 216
KOG3359 723 consensus Dolichyl-phosphate-mannose:protein O-man 100.0
COG1928 699 PMT1 Dolichyl-phosphate-mannose--protein O-mannosy 100.0
KOG3358211 consensus Uncharacterized secreted protein SDF2 (S 100.0
PF02815190 MIR: MIR domain; InterPro: IPR003608 The MIR domai 100.0
KOG3359 723 consensus Dolichyl-phosphate-mannose:protein O-man 99.9
COG1928 699 PMT1 Dolichyl-phosphate-mannose--protein O-mannosy 99.83
KOG3358211 consensus Uncharacterized secreted protein SDF2 (S 99.82
PF02815190 MIR: MIR domain; InterPro: IPR003608 The MIR domai 99.72
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 99.58
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 99.47
PF08709214 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanod 99.04
KOG3533 2706 consensus Inositol 1,4,5-trisphosphate receptor [S 99.03
KOG3533 2706 consensus Inositol 1,4,5-trisphosphate receptor [S 98.88
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 98.7
PF08709214 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanod 98.39
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 98.08
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 96.14
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 95.81
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 95.14
cd00257119 Fascin Fascin-like domain; members include actin-b 93.85
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 91.87
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 89.55
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 83.27
cd00058123 FGF Acidic and basic fibroblast growth factor fami 82.04
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-57  Score=418.53  Aligned_cols=207  Identities=35%  Similarity=0.508  Sum_probs=185.9

Q ss_pred             hHHHHHHHHHHhcCCCCCCCCCch-hhc------cCC-CCeeeeCCEEEEEeCCC-CCCeeeecccCCCC-CCccEEEee
Q 027975            3 MVFFALAVFLFLGLNLDESSPSSA-SAA------SSE-TVEITYGTVLKLMHEKT-KFRLHSHEVPYGSG-SGQQSVTGF   72 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~s~~-q~~------~~~-~~~V~~Gd~I~L~h~~T-~~~LhSh~~~y~~~-s~~q~Vt~~   72 (216)
                      +++|++||.+|.+|||||+||||+ ||.      ..+ ++.|.+|++|+|+|..+ ++|||||.+.||.| |+|||||||
T Consensus       273 l~~F~vHf~~l~~sGpgDs~mss~FQa~L~G~~i~~~~p~~v~~GS~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y  352 (723)
T KOG3359|consen  273 LLFFYVHFSLLNRSGPGDSFMSSEFQASLKGNSITNGVPRDVAYGSTITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGY  352 (723)
T ss_pred             HHHHHHHHHHhhcCCCCccccCHHHHHHhCCCCCCCCCcceeeeccEEEEEecCCcceeeecccccCCCCcCccceEEee
Confidence            678999999999999999999999 992      234 89999999999999876 79999999999999 999999999


Q ss_pred             cCCCCCCCcEEEEEc-CCCC---CCCCCeeeeCCEEEEEeCCCCCeEEecCCCCCCCC-ceEEEEecCCC-CCCCCCcEE
Q 027975           73 PDVDDANSYWIVKPI-LGAS---AKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISG-NLEISCFGGEE-ESDTGDYWR  146 (216)
Q Consensus        73 ~~~~d~n~~W~I~~~-~~~~---~~~~~~v~~gd~IrL~H~~T~~~L~sh~~~~p~s~-~~EVs~~~~~~-~~d~~~~W~  146 (216)
                      ++ +|.||.|.|++. ...+   ..+.++|+.||.|||+|+.|+|+||+|++++|+++ ++||||+++.+ .+|++|+|+
T Consensus       353 ~~-~D~NN~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~  431 (723)
T KOG3359|consen  353 PH-KDANNEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWR  431 (723)
T ss_pred             cc-cCCCceEEEecCCCCcccccCCcceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEE
Confidence            99 999999999942 1111   23467899999999999999999999999999997 79999999765 899999999


Q ss_pred             EEEecCC-----c-eeccCCcEEEEEccCCceeccCCCCCCCCCCCCeeEEEEeCC-CCCCcEEEeeeecC
Q 027975          147 VMIEGSG-----K-TWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREK-RADNVWLAAEGVYL  210 (216)
Q Consensus       147 IE~~~~~-----~-~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~EV~c~~~~-~~~~~W~i~~~~~~  210 (216)
                      ||+.++.     . +.+..+.|||+|+.|||||.+|+.+||+||++|+||+|.+++ ++++.|+|||+++.
T Consensus       432 veIv~~~~~~~~~~i~tl~t~fRl~h~~t~c~L~ss~~~LP~WGf~Q~EV~c~~~~~~~~T~WnVEe~~n~  502 (723)
T KOG3359|consen  432 VEIVKKKPNEDQERIKTLTTEFRLIHVLTGCYLKSSGKKLPEWGFEQQEVVCAKNPRDKSTTWNVEEHENP  502 (723)
T ss_pred             EEEecCCCCCCCceEEEeeeEEEEEEcccceEEccCCCcCCcccccceEEecccCCcCCCceEEEecccCC
Confidence            9998753     2 456899999999999999999999999999999999999886 58999999999964

>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only] Back     alignment and domain information
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2 Back     alignment and domain information
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only] Back     alignment and domain information
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2 Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor Back     alignment and domain information
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms] Back     alignment and domain information
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
3mal_A199 Crystal Structure Of The Sdf2-Like Protein From Ara 5e-90
1t9f_A187 Structural Genomics Of Caenorhabditis Elegans: Stru 8e-36
>pdb|3MAL|A Chain A, Crystal Structure Of The Sdf2-Like Protein From Arabidopsis Length = 199 Back     alignment and structure 
Iteration: 1

 Score =  326 bits (836), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 168/184 (91%)
Query: 32  ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGAS 91
           E VEITYG+ +KLMHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G +
Sbjct: 14  EGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTT 73
Query: 92  AKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEG 151
            KQGD +KSG  IRLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEG
Sbjct: 74  EKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEG 133
Query: 152 SGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLP 211
           SGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP
Sbjct: 134 SGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLP 193
Query: 212 VTES 215
           + ES
Sbjct: 194 LNES 197
>pdb|1T9F|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Structure Of A Protein With Unknown Function Length = 187 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 1e-77
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 2e-66
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 1e-13
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 1e-19
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 3e-10
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 3e-06
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 1e-05
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 2e-13
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 1e-07
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 2e-07
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 2e-05
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 3e-04
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} Length = 199 Back     alignment and structure
 Score =  230 bits (589), Expect = 1e-77
 Identities = 150/193 (77%), Positives = 174/193 (90%)

Query: 24  SSASAASSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWI 83
           +SA+A+  E VEITYG+ +KLMHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWI
Sbjct: 6   ASAAASGKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWI 65

Query: 84  VKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGD 143
           VKP+ G + KQGD +KSG  IRLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD
Sbjct: 66  VKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGD 125

Query: 144 YWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWL 203
           +W+++IEGSGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WL
Sbjct: 126 HWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWL 185

Query: 204 AAEGVYLPVTESK 216
           AAEGVYLP+ ES 
Sbjct: 186 AAEGVYLPLNESS 198
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Length = 187 Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Length = 187 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Length = 604 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Length = 559 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Length = 559 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Length = 559 Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Length = 381 Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Length = 381 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 100.0
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 100.0
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 99.98
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 99.93
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 99.91
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 99.91
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 99.9
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 99.85
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 99.69
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 99.54
3im6_A217 Cardiac Ca2+ release channel; ryanodine receptor 2 99.03
1xzz_A246 Inositol 1,4,5-trisphosphate receptor type 1; IP3 98.99
3im6_A217 Cardiac Ca2+ release channel; ryanodine receptor 2 98.45
1xzz_A246 Inositol 1,4,5-trisphosphate receptor type 1; IP3 98.44
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 95.76
3vsf_A526 Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana 90.49
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 90.15
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 90.14
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 89.14
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 88.44
3ef2_A 293 Agglutinin, lectin; beta-trefoil, calcium-binding, 88.4
1q1u_A144 FGF-12, fibrobast growth factor homologous factor 88.01
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 87.32
3phz_A 286 Ricin B-related lectin; beta trefoil, saccharide b 87.0
3q7x_A132 De novo designed beta-trefoil architecture with S 86.63
2p39_A155 Fibroblast growth factor 23; atypical beta-trefoil 85.38
1nun_A145 Fibroblast growth factor-10; beta-trefoil fold, im 85.06
1ijt_A128 FGF4, fibroblast growth factor 4; B-trefoil fold, 82.27
3nbc_A148 Ricin B-like lectin; lactose, sugar BIND protein; 81.43
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
Probab=100.00  E-value=4.6e-58  Score=376.68  Aligned_cols=186  Identities=79%  Similarity=1.347  Sum_probs=170.4

Q ss_pred             cCCCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeC
Q 027975           30 SSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHM  109 (216)
Q Consensus        30 ~~~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~  109 (216)
                      ..++..|.|||+|+|+|+.|++|||||.+.||.||+|||||||++.+|.||+|+|++..+.....+++|++||+|||+|+
T Consensus        12 ~~~~~~V~~Gs~VtL~h~~t~~~LHSH~~~yp~gS~qQqVT~y~~~~D~Nn~W~I~~~~~~~~~~~~~v~~gd~IRL~H~   91 (199)
T 3mal_A           12 GKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHM   91 (199)
T ss_dssp             ----CBCBTTCEEEEEETTTCCEEEEEEEECSSTTCCEEEEEECCSCCGGGCEEEECCTTSSCCTTSBCBTTCEEEEEET
T ss_pred             CCCCCEEeeCCEEEEEECCCCCcceeCCccCCCCCCCEEEEeeCCCCCCCCEEEEEecCcCCcCCCcEeecCCEEEEEEC
Confidence            56788999999999999999999999999999999999999999856889999999887655567889999999999999


Q ss_pred             CCCCeEEecCCCCCCCCceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCCCCCCCCCCCee
Q 027975          110 RTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQE  189 (216)
Q Consensus       110 ~T~~~L~sh~~~~p~s~~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~E  189 (216)
                      .|++|||||++++|+++++||+|++..+.+|.++.|+||+.+.++.++.++.|||+|+.|||||.+|+.+||+|+++|+|
T Consensus        92 ~T~~~LhSH~~~~P~s~~~EVs~~~~~~~~D~~d~W~Vei~~~~~~~~~~~~fRL~H~~T~~yL~sh~~~lp~wg~~Q~E  171 (199)
T 3mal_A           92 KTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQE  171 (199)
T ss_dssp             TTCCEEEEEEEECTTTCSEEEEEECBTTBCCGGGCEEEEESSSCCBCBTTCEEEEEETTTCCEEEEEEEECCSSSTTCEE
T ss_pred             CCCCCEeECCcCCCCCCCeEEEEeccCCCCCCCCeEEEEEcCCCCEEEcCCeEEEEECCCCeEEeeCCCCCCCCCCcceE
Confidence            99999999999999999999999996666899999999998878889999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCcEEEeeeecCCCCCC
Q 027975          190 VCGVREKRADNVWLAAEGVYLPVTES  215 (216)
Q Consensus       190 V~c~~~~~~~~~W~i~~~~~~~~~~~  215 (216)
                      |+|.+.++.+++|+|+|++|+|++++
T Consensus       172 V~~~~~~~~~~~W~vee~~~~~~~~~  197 (199)
T 3mal_A          172 VCGIREKKADNIWLAAEGVYLPLNES  197 (199)
T ss_dssp             EEEESSCCGGGCEEEEEEECCCCCC-
T ss_pred             EEeeCCCCCCCeEEeCccccCCcccc
Confidence            99998888899999999999999864
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Back     alignment and structure
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A Back     alignment and structure
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A Back     alignment and structure
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A Back     alignment and structure
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A* Back     alignment and structure
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus} Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens} Back     alignment and structure
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 216
d1t9fa_178 b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) 4e-65
d1t9fa_178 b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) 4e-10
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Length = 178 Back     information, alignment and structure

class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: Hypothetical protein R12E2.13 (1D10)
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  197 bits (501), Expect = 4e-65
 Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 3/180 (1%)

Query: 30  SSETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILG 89
            S+   +T  +VLK ++     RLHSH+V YGSGSGQQSVT   + DD NS+W + P L 
Sbjct: 1   GSDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALN 60

Query: 90  ASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPIS-GNLEISCFGGEEESDTGDYWRVM 148
           A   +GD IK G  IRL+H+ T  +LHSH   +P+S  + E+S FG E ESDTGD W V+
Sbjct: 61  AKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVI 120

Query: 149 IEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGV 208
              +G  W + ++ +L+H  TG YL    +++ R   GQ+EV G       + W  AEG+
Sbjct: 121 C--NGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSAWKVAEGI 178
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Length = 178 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 100.0
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 99.9
d1n4ka2200 IP3 receptor type 1 binding core, domain 1 {Mouse 99.09
d1n4ka2200 IP3 receptor type 1 binding core, domain 1 {Mouse 98.93
d2ihoa1154 Agglutinin MOA, N-terminal domain {Fairy-ring mush 96.15
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 95.85
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 94.98
d1nuna_139 Fibroblast growth factor-10, FGF10 {Human (Homo sa 92.32
d1q1ua_138 Fibrobast growth factor homologous factor 1 (FHF1b 91.84
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 91.53
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 90.97
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 89.95
d1qqka_132 Keratinocyte growth factor, FGF7 {Rat (Rattus norv 89.93
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 88.55
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 87.48
d2ihoa1154 Agglutinin MOA, N-terminal domain {Fairy-ring mush 85.46
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 84.84
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 83.04
d1sr4a_167 Cytolethal distending toxin subunit A {Haemophilus 82.76
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: MIR domain
family: MIR domain
domain: Hypothetical protein R12E2.13 (1D10)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=5.8e-55  Score=351.26  Aligned_cols=176  Identities=44%  Similarity=0.741  Sum_probs=163.5

Q ss_pred             CCCCeeeeCCEEEEEeCCCCCCeeeecccCCCCCCccEEEeecCCCCCCCcEEEEEcCCCCCCCCCeeeeCCEEEEEeCC
Q 027975           31 SETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMR  110 (216)
Q Consensus        31 ~~~~~V~~Gd~I~L~h~~T~~~LhSh~~~y~~~s~~q~Vt~~~~~~d~n~~W~I~~~~~~~~~~~~~v~~gd~IrL~H~~  110 (216)
                      ++.++|+|||+|+|+|+.||+|||||..+||.||+||+||||.+..|.|++|+|++........+.+|++||+|||+|..
T Consensus         2 ~~~~~V~~Gs~i~l~~~~t~~~LHSH~~~Y~~gS~qQqVT~~~~~~d~Nn~W~I~~~~~~~~~~~~~vk~Gd~IrL~H~~   81 (178)
T d1t9fa_           2 SDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKIRLKHLT   81 (178)
T ss_dssp             CTTCBCBTTCEEEEEETTTCCEEEEEEEECSSSSCCEEEEEESCSSCGGGCEEEEECTTCCCCTTCBCCTTCEEEEEETT
T ss_pred             CCCCEEEECeEEEEEECCCCCceecCcccCCCCCCCceEEEeCCcccCCCcEEEecCCCCCCCCCcEecCCCEEEEEEcC
Confidence            56789999999999999999999999999999999999999999557799999999877666778899999999999999


Q ss_pred             CCCeEEecCCCCCCCC-ceEEEEecCCCCCCCCCcEEEEEecCCceeccCCcEEEEEccCCceeccCCCCCCCCCCCCee
Q 027975          111 TRKWLHSHLHASPISG-NLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQE  189 (216)
Q Consensus       111 T~~~L~sh~~~~p~s~-~~EVs~~~~~~~~d~~~~W~IE~~~~~~~~~~~s~frL~H~~t~~yL~s~~~~lp~~~~~q~E  189 (216)
                      |++||++|++++|++. ++||+|++..+.+|+++.|+||+.  +..+..++.|||+|+.|||||++++.+||+|+++|+|
T Consensus        82 T~~~L~sh~~~sp~s~~~~eVs~~g~~~~~d~~d~W~Vei~--~~~~~~~~~fRL~H~~t~~yL~ss~~~lp~~~~~Q~E  159 (178)
T d1t9fa_          82 TGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICN--GDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQRE  159 (178)
T ss_dssp             TCCEEEEEEEECSSCTTSEEEEEECCTTTCCGGGCEEEECS--SSSCBTTSEEEEEETTTCCEEEEEEEECCTTSTTCEE
T ss_pred             CCceEecCCcCCCCCccceEEEEeccCCcccccCCEEEEEc--CCeecccceEEEEEccCCeEEecCccccCCCCCcceE
Confidence            9999999999999996 899999998777899999999985  4567889999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCcEEEeeee
Q 027975          190 VCGVREKRADNVWLAAEGV  208 (216)
Q Consensus       190 V~c~~~~~~~~~W~i~~~~  208 (216)
                      |+|.++++++++|+|||++
T Consensus       160 V~~~~~~~~~~~W~ve~gi  178 (178)
T d1t9fa_         160 VVGTDSITGGSAWKVAEGI  178 (178)
T ss_dssp             EEEESSCCTTCCEEEECCC
T ss_pred             EEecCCCCCCCEEEeccCC
Confidence            9999988899999999985
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure