Citrus Sinensis ID: 027984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MSSDNYNNNNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHcccccEEEHHHcccccHHHHHHHHHccccccccccEEEEEEEccEEEEEEccccEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHEEccccccEEEEEEEEccEEEEEcccccEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHccccccEccc
Coil and Loop (DISEMBL)
mssdnynnnnpylrltplpasgnrswGEICEMLNRCGKRFEDATRKAECLADnvwhhlrisprlSDAAMAKIAQGTkvfteggyEKVFQQEFHKLAGEKLLKAYACYistsngpviGTLYISTQrmafcsdyplshysssgqqeWVYFKVVVDldqlrtvnpsanrwnpsekYIHVVTRDGYEFWFMGFISYDKALKTLTEALRrfpdtsgglvpv
Flexible Loop (DISEMBL)
mssdnynnnnpylrltplpasgnrSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRtvnpsanrwnpsekyIHVVTRDGYEFWFMGFISYDKALKTLTEALrrfpdtsgglvpv
Low Complexity Region (SEG)
MSSDNYNNNNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Disordered region (IsUnstruct)
*********************GNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR************
Disordered Region (DISOPRED)
************************************************CLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLD******************IHVVTRDGYEFWFMGFISYDKALKTLT****************
Disordered Region (DISEMBL)
********NNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP*********
Disordered Region (DISPRO)
********NNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP*T*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDNYNNNNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q9M122	233	GEM-like protein 2 OS=Ara	yes	no	0.902	0.836	0.532	1e-57
Q8S8F8	299	GLABRA2 expression modula	no	no	0.898	0.648	0.515	5e-56
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.888	0.741	0.515	1e-55
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.805	0.639	0.448	8e-42
Q9M063	239	Putative GEM-like protein	no	no	0.796	0.719	0.45	4e-41
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.819	0.797	0.385	7e-34
Q9FMW4	219	Putative GEM-like protein	no	no	0.736	0.726	0.396	1e-32
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.736	0.729	0.383	2e-31
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.736	0.757	0.383	5e-31

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 145/197 (73%), Gaps = 2/197 (1%)

Query: 9   NNPYLRLT-PLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDA 67
           +NPY+ +T P  AS  RS  ++ E+LNRCGK+ EDATRKAE L   +  HL+ SP +SDA
Sbjct: 28  DNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDA 87

Query: 68  AMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMA 127
           AMA+++QGTK+  EGG E+VFQ+EF  LA EKLL ++ CYIST++GPV G +YIS +R+A
Sbjct: 88  AMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIA 147

Query: 128 FCSDYPLSHYSSSGQQE-WVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 186
           FCSDY +   SS+G      Y+KVV++ +++ +++ S N   PSE+Y+H+VTRDG+EFWF
Sbjct: 148 FCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWF 207

Query: 187 MGFISYDKALKTLTEAL 203
           MGF+SY  A   L +AL
Sbjct: 208 MGFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  217 bits (552), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 139/198 (70%), Gaps = 4/198 (2%)

Query: 10  NPYLRLTPLP---ASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSD 66
           NPY+  +P     AS   +   +  +L R GKR  +A +K E LA N W HLR +P  +D
Sbjct: 96  NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155

Query: 67  AAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRM 126
           AAM +IAQ TKVF EGGYEK+F+Q F     E+LL ++ACY+STS GPV+G LYIS+ ++
Sbjct: 156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215

Query: 127 AFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 186
           A+CSD PLS Y +  Q EW Y+KVV+ L QL+ VNPSA+  NP+EKYI V++ D +EFWF
Sbjct: 216 AYCSDNPLS-YKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274

Query: 187 MGFISYDKALKTLTEALR 204
           MGF++YD A+ +L ++L+
Sbjct: 275 MGFLNYDGAVTSLQDSLQ 292

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  216 bits (550), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 139/196 (70%), Gaps = 4/196 (2%)

Query: 9   NNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAA 68
           +NPY+  +P P     +   + + L + GK   DAT+KAE LA N W HL+  P ++DAA
Sbjct: 64  SNPYVSPSPAP---RNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAA 120

Query: 69  MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 128
           +++IAQGTK+  EGGYEKVF+Q F  L  EKLLK YACY+STS GPV+G +Y+ST ++AF
Sbjct: 121 VSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAF 180

Query: 129 CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 188
            SD PLS Y    Q  W Y+KVV+  +QL+ VNPS +R N S+KYI V++ D +EFWFMG
Sbjct: 181 SSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239

Query: 189 FISYDKALKTLTEALR 204
           F++Y+ A+K+L EA++
Sbjct: 240 FVTYESAVKSLQEAVQ 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  170 bits (430), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 111/174 (63%)

Query: 40  FEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEK 99
           F   +RKAE +A N+WH+L+  P +S+ A  K+    K  T+GG+E +F+Q F     E 
Sbjct: 97  FHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNET 156

Query: 100 LLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRT 159
           L K +ACY+ST+ GPV GT+Y+S  R+AFCSD PL   + SGQ+ W Y++VVV L  + T
Sbjct: 157 LKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVAT 216

Query: 160 VNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 213
           VNP   +  P EKYI + T DG++FWFMGF++Y+KA   L  ++  F    G +
Sbjct: 217 VNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQTAHGSV 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 123/200 (61%), Gaps = 28/200 (14%)

Query: 10  NPYLRLTPLPASGNRSWGEICE----MLNRCGKRFEDATRKAECLADNVWHH-LRISPRL 64
           NPY+   P   S + S  E  E    +L R G+R  +A  KAE LA N W H LR     
Sbjct: 55  NPYVARAPTETS-DASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR----- 108

Query: 65  SDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQ 124
             AAM +IAQ TKV  EGGYEK+F+Q F  +  E+L  ++ACY+STS GPV+G LY+ST 
Sbjct: 109 --AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTA 166

Query: 125 RMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEF 184
           ++A+CSD  L               VV+ L QL++VNPS +  NP+EKYI V++ D +EF
Sbjct: 167 KLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEF 211

Query: 185 WFMGFISYDKALKTLTEALR 204
           WFMGF++Y+ A+ +L + L+
Sbjct: 212 WFMGFLNYEGAVTSLQDTLQ 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 110/187 (58%), Gaps = 10/187 (5%)

Query: 18  LPASGNRS-WGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGT 76
           +PAS  +S    +  +L R         +K +   + V    +I P+L++    K++ G 
Sbjct: 35  VPASSKKSEQSNVKSILKR---------KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGA 85

Query: 77  KVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSH 136
           ++   GG EK+F++ F    GEKL K Y CY+ST+ GP+ G L+IS+++MAFCS+  +  
Sbjct: 86  RILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKV 145

Query: 137 YSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKAL 196
            S  G    V++KV + L ++  VN S N   PS+KY+ VVT DG++FWFMGF+SY KA 
Sbjct: 146 DSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAF 205

Query: 197 KTLTEAL 203
             L +AL
Sbjct: 206 NCLEKAL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 101/159 (63%)

Query: 45  RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 104
           +K +   + V    ++ P+L++    K++ G ++   GG EK++++ F     EKL KAY
Sbjct: 55  KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query: 105 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 164
            CY+ST+ GP+ G L+IS++++AFCS+  +   S  G+   V++KV + L ++  VN S 
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query: 165 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 203
           N   PS+KY+ VVT DG++FWFMGF+SY KA   L +AL
Sbjct: 175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 98/159 (61%)

Query: 45  RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 104
           +K +   +      ++ P+L++    K++ G K+   GG EK++++ F     EKL KAY
Sbjct: 55  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAY 114

Query: 105 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 164
            CY+ST+ GP+ G L+IS++++AFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQ 174

Query: 165 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 203
           N   PS+KY+ +VT D ++FWFMGF+SY KA   L +AL
Sbjct: 175 NTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  134 bits (337), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query: 45  RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 104
           +K +   +      ++ P+L++    K++ G K+   GG EK++++ F     EKL KAY
Sbjct: 47  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query: 105 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 164
            CY+ST+ G + G L+IS++++AFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query: 165 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 203
           N   PS++Y+ VVT D Y+FWFMGF+SY KA   L +AL
Sbjct: 167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
224128097	223	predicted protein [Populus trichocarpa]	0.972	0.941	0.654	5e-82
118489249	223	unknown [Populus trichocarpa x Populus d	0.972	0.941	0.654	6e-82
255548163	225	conserved hypothetical protein [Ricinus	0.967	0.928	0.649	8e-79
300078584	261	hypothetical protein [Jatropha curcas]	0.967	0.800	0.634	5e-78
224064396	177	predicted protein [Populus trichocarpa]	0.814	0.994	0.715	4e-72
116789488	292	unknown [Picea sitchensis]	0.912	0.674	0.585	8e-66
351722466	215	uncharacterized protein LOC100306065 [Gl	0.916	0.920	0.572	6e-64
326493394	291	predicted protein [Hordeum vulgare subsp	0.916	0.680	0.567	2e-62
357452167	241	GEM-like protein [Medicago truncatula] g	0.986	0.883	0.522	6e-60
357116515	240	PREDICTED: GEM-like protein 1-like [Brac	0.939	0.845	0.524	4e-58

>gi|224128097|ref|XP_002320243.1| predicted protein [Populus trichocarpa] gi|222861016|gb|EEE98558.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 177/220 (80%), Gaps = 10/220 (4%)

Query: 5   NYNNNNPYLRLTPLP--------ASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWH 56
           ++NNNNPYL+  P+P         +GNRS G+IC+ LNRCGKR E ATRKAE  ADN+WH
Sbjct: 2   DHNNNNPYLQFAPVPPATSNGHGTNGNRSMGKICDALNRCGKRVEVATRKAEVYADNIWH 61

Query: 57  HLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVI 116
           H ++SP L+DAAMA+I+QGTKV TEGG++KVFQQ F  L GEK L AYACYISTS GPVI
Sbjct: 62  HFKVSPSLTDAAMARISQGTKVLTEGGHDKVFQQTFEVLPGEKFLNAYACYISTSTGPVI 121

Query: 117 GTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHV 176
           GTLYIS++++AFCS++P  +YS +GQQ+W+Y+KVVV  D+LR VNPS+NR NPS+KYI V
Sbjct: 122 GTLYISSKKVAFCSEHPFCYYSPTGQQQWMYYKVVVQPDRLRAVNPSSNRMNPSDKYIQV 181

Query: 177 VTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV 216
           VT DG+EFWFMGFISYDKALK L E L++  D+SG  VPV
Sbjct: 182 VTTDGHEFWFMGFISYDKALKQLCETLQQSRDSSG--VPV 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489249|gb|ABK96430.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 178/220 (80%), Gaps = 10/220 (4%)

Query: 5   NYNNNNPYLRLTPLPAS--------GNRSWGEICEMLNRCGKRFEDATRKAECLADNVWH 56
           ++NNNNPYL+  P+P +        GNRS G+IC+ LNRCGKR E ATRKAE   DN+WH
Sbjct: 2   DHNNNNPYLQFAPVPPATSNGHGTNGNRSMGKICDALNRCGKRVEVATRKAEVYVDNIWH 61

Query: 57  HLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVI 116
           H ++SP L+DAAMA+I+QGTKV TEGG++KVFQQ F  L GEK L AYACYISTS GPVI
Sbjct: 62  HFKVSPSLTDAAMARISQGTKVLTEGGHDKVFQQTFEVLPGEKFLNAYACYISTSTGPVI 121

Query: 117 GTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHV 176
           GTLYIS++++AFCS++P  +YS +GQQ+W+Y+KVVV  D+LRTVNPS+NR +PS+KYI V
Sbjct: 122 GTLYISSKKVAFCSEHPFCYYSPTGQQQWMYYKVVVQPDRLRTVNPSSNRMSPSDKYIQV 181

Query: 177 VTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV 216
           VT DG+EFWFMGFISYDKALK L EAL++  D+SG  VPV
Sbjct: 182 VTTDGHEFWFMGFISYDKALKQLCEALQQSRDSSG--VPV 219

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548163|ref|XP_002515138.1| conserved hypothetical protein [Ricinus communis] gi|223545618|gb|EEF47122.1| conserved hypothetical protein [Ricinus communis]

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 139/214 (64%), Positives = 173/214 (80%), Gaps = 5/214 (2%)

Query: 5   NYNNNNPYLRLTPLPASG-----NRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLR 59
           NY+N NPYL++ P+ ++G      R    IC+ L+RCGKR +D TRKAE  ADNVWHHL+
Sbjct: 7   NYSNGNPYLQIAPVHSNGYGPSSRRPMSRICDALSRCGKRVDDVTRKAEVFADNVWHHLK 66

Query: 60  ISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTL 119
           +S   +DAAMA+I+QGTKV TEGG++KVFQQ F  L GEKLLKAY CY+STS+GPVIGTL
Sbjct: 67  VSSSFTDAAMARISQGTKVLTEGGHDKVFQQAFGVLPGEKLLKAYVCYLSTSSGPVIGTL 126

Query: 120 YISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTR 179
           YIST+RMAF SDYP  +YSS+GQQ+ +Y+KVVV LD+LRT NPS++R NPSEKYI +VT 
Sbjct: 127 YISTKRMAFSSDYPFWYYSSTGQQQRMYYKVVVQLDKLRTANPSSSRINPSEKYIQIVTT 186

Query: 180 DGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 213
           DG++FWFMGF+SYDKALK LTEAL+   D+SG +
Sbjct: 187 DGHDFWFMGFVSYDKALKQLTEALQCSRDSSGDI 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300078584|gb|ADJ67196.1| hypothetical protein [Jatropha curcas]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 137/216 (63%), Positives = 173/216 (80%), Gaps = 7/216 (3%)

Query: 5   NYNNNNPYLRLTPLPASGN-------RSWGEICEMLNRCGKRFEDATRKAECLADNVWHH 57
           N+N  NPYL++ P+ A+G        R    IC++LNRCGKR +D TRK E  ADNVWHH
Sbjct: 10  NHNGGNPYLQIAPVYANGYGPYGNGGRPISRICDVLNRCGKRVDDVTRKVEIYADNVWHH 69

Query: 58  LRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIG 117
           L++S  L+DAAMA+IAQGTKV TEGG++KVFQQ F  L GEKLL AY CY+STS+GPVIG
Sbjct: 70  LKVSASLTDAAMARIAQGTKVLTEGGHDKVFQQTFGYLHGEKLLNAYVCYLSTSSGPVIG 129

Query: 118 TLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVV 177
           TLY+S++R+ FCSDYP  +Y+S+GQQ+W+Y+KVVV LD+LRTVNPS++R + SE+YI +V
Sbjct: 130 TLYVSSKRVTFCSDYPFCYYASNGQQQWMYYKVVVQLDKLRTVNPSSSRTDSSERYIQIV 189

Query: 178 TRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 213
           T DG+EFWFMGFISYDKAL  LTEAL+R   +SGG+
Sbjct: 190 TTDGHEFWFMGFISYDKALNQLTEALQRSRGSSGGI 225

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064396|ref|XP_002301455.1| predicted protein [Populus trichocarpa] gi|222843181|gb|EEE80728.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 150/176 (85%)

Query: 27  GEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEK 86
           G+I + LNRCGKR E ATRKAE  ADN+WHH ++SP L+DAAMA+IAQGTKV  EGG++K
Sbjct: 2   GKIRDALNRCGKRVELATRKAEVYADNIWHHFKVSPSLADAAMARIAQGTKVLAEGGHDK 61

Query: 87  VFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWV 146
           VFQQ F  L GEKLL AYACYISTS GPVIGTLY+S++++AFCS+YP  +YSS+GQQ+W+
Sbjct: 62  VFQQTFEVLPGEKLLNAYACYISTSTGPVIGTLYVSSKKVAFCSEYPFCYYSSTGQQQWM 121

Query: 147 YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEA 202
           Y+KVVV LD+LR VNPS+NR N SEKYI +VT+DG EFWFMGFISYDKALK L EA
Sbjct: 122 YYKVVVQLDRLRAVNPSSNRANHSEKYIQIVTKDGQEFWFMGFISYDKALKQLCEA 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789488|gb|ABK25265.1| unknown [Picea sitchensis]

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 116/198 (58%), Positives = 145/198 (73%), Gaps = 1/198 (0%)

Query: 9   NNPYLRLTPLPAS-GNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDA 67
           +NPY+  TP   S G R    I ++ N+C K+ E+ TRK E  A NVW HL+I P  +D 
Sbjct: 87  SNPYVATTPATGSTGKRPMDMIADVFNKCSKKLEENTRKVEGFAGNVWQHLKIGPSFTDT 146

Query: 68  AMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMA 127
           AM +IAQGTK+ TEGGYE VF++ F  + GEKL KA+ACY+STS GPVIGTLY+ST ++A
Sbjct: 147 AMGRIAQGTKLLTEGGYENVFRRTFETIPGEKLQKAHACYLSTSAGPVIGTLYLSTVKLA 206

Query: 128 FCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 187
           FCSD PL++Y   GQ EW Y+KV V L QL+ VNPSANR NP+EKYI ++T D +EFWFM
Sbjct: 207 FCSDSPLAYYPHPGQTEWSYYKVTVLLSQLKAVNPSANRMNPAEKYIQIITTDDHEFWFM 266

Query: 188 GFISYDKALKTLTEALRR 205
           GF++YDKALK L EA R 
Sbjct: 267 GFVTYDKALKNLQEASRH 284

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722466|ref|NP_001236989.1| uncharacterized protein LOC100306065 [Glycine max] gi|255627427|gb|ACU14058.1| unknown [Glycine max]

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 155/199 (77%), Gaps = 1/199 (0%)

Query: 5   NYNNNNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRL 64
           N  +NNPY+++ PL  +  +    +C+ LNRC ++   ATR+AE +ADN W+H+RI   L
Sbjct: 3   NNGSNNPYVQIFPLHTNRPKPMDTVCDALNRCSRKVGKATRRAETMADNFWNHIRIGSSL 62

Query: 65  SDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQ 124
           +DAA+A+I QGTKV T GG + +FQQ F    GEKL+K++ACY+STS GPVIGT+Y+ST+
Sbjct: 63  ADAAVARIVQGTKVLTLGGPDILFQQSFGNFPGEKLIKSFACYLSTSTGPVIGTIYVSTK 122

Query: 125 RMAFCSDYPLSHYSSSGQQ-EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYE 183
           R+AFCSDYPL +Y  S QQ + V++KVV+ LDQL TV+P +NR+NP+EKY+ +VT DGYE
Sbjct: 123 RVAFCSDYPLCNYPLSLQQNQSVHYKVVLQLDQLSTVSPFSNRFNPAEKYMQLVTVDGYE 182

Query: 184 FWFMGFISYDKALKTLTEA 202
           F+FMGFI+YDKALKT+ EA
Sbjct: 183 FYFMGFIAYDKALKTVREA 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326493394|dbj|BAJ85158.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 153/201 (76%), Gaps = 3/201 (1%)

Query: 9   NNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAA 68
            NPY+++TP  AS + +   I   L R GK  ED TRKA     N+W+HLR +P ++DAA
Sbjct: 92  GNPYVQVTPASASPS-TRQSIMRALGRYGKLLEDGTRKAADTTGNIWNHLRTAPNMADAA 150

Query: 69  MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 128
           +A++AQGTKV+ EGG+E+VF Q F  + GE+L KAYACY+STS+GPVIGTLY+ST R+AF
Sbjct: 151 VARLAQGTKVYAEGGHERVFHQVFGGVPGEQLRKAYACYLSTSSGPVIGTLYLSTARLAF 210

Query: 129 CSDYPLSHYSSSGQQ--EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 186
           CSD P+S+++ S  Q  E +Y+KVV+ L+Q+R V+PSA+ W PSE+YI V T D +EFWF
Sbjct: 211 CSDSPVSYHAPSPTQPPEPMYYKVVLPLNQVRAVSPSASMWRPSERYIQVATTDSHEFWF 270

Query: 187 MGFISYDKALKTLTEALRRFP 207
           MGF+SYDKALK L++AL+R P
Sbjct: 271 MGFVSYDKALKHLSDALQRRP 291

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452167|ref|XP_003596360.1| GEM-like protein [Medicago truncatula] gi|355485408|gb|AES66611.1| GEM-like protein [Medicago truncatula] gi|388521459|gb|AFK48791.1| unknown [Medicago truncatula]

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/220 (52%), Positives = 157/220 (71%), Gaps = 7/220 (3%)

Query: 2   SSDNYNN-NNPYLRLTPL---PASGNRS--WGEICEMLNRCGKRFEDATRKAECLADNVW 55
           S+  +NN NNPY++L+P     A+ NR     ++   +N C ++  +ATR AE + D++W
Sbjct: 17  STGMHNNINNPYVQLSPANPSSAAANRPNPMDKVSGAINNCSRKVGEATRHAENMVDSIW 76

Query: 56  HHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTS-NGP 114
           +H+R+S   +DAAMA++ QGTKV   GG EK+FQQ F   +GEKLLK Y CYIST+ +GP
Sbjct: 77  NHVRMSSSPADAAMARLVQGTKVIANGGSEKLFQQTFGVFSGEKLLKQYVCYISTTASGP 136

Query: 115 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 174
           VIGTLYI+T+R+AFCSDYP+ H+  S Q + +Y+KVV+ L QL TV P+ NR+N  EKYI
Sbjct: 137 VIGTLYITTKRLAFCSDYPMCHHPFSLQHQCLYYKVVIQLGQLGTVTPATNRFNSREKYI 196

Query: 175 HVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLV 214
            + T DGYEF FMGF+SYD+ALKTL E L ++ + S G V
Sbjct: 197 EIFTVDGYEFLFMGFVSYDRALKTLNEVLHQYGNHSSGNV 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357116515|ref|XP_003560026.1| PREDICTED: GEM-like protein 1-like [Brachypodium distachyon]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 152/208 (73%), Gaps = 5/208 (2%)

Query: 1   MSSDNYNNNNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRI 60
           +++++    NPY+ +TP  AS + +   I + L R GK  ED TRKA     N+W+HLR 
Sbjct: 31  VTAESNGEGNPYVLVTPASASPS-TCQSIRKALGRYGKLLEDGTRKAADTTGNIWNHLRT 89

Query: 61  SPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLY 120
           +P ++DAA+A++ QGTKV+ EGG+++VF Q F  + GE+L KAYACY+STS GP+IGTLY
Sbjct: 90  APNMADAAVARLTQGTKVYAEGGHDRVFHQVFGAVPGEQLRKAYACYLSTSTGPIIGTLY 149

Query: 121 ISTQRMAFCSDYPLSHYSSSGQQ----EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHV 176
           +ST R+AFCSD PL +Y     Q    E +Y+KVV+ L+QLRTV+PSA+ WN +++YI +
Sbjct: 150 LSTARLAFCSDAPLPYYHGPTAQAQPPEPMYYKVVLPLNQLRTVSPSASMWNRADRYIQI 209

Query: 177 VTRDGYEFWFMGFISYDKALKTLTEALR 204
            T D +EFWFMGF+SYDKALK L+EAL+
Sbjct: 210 STVDNHEFWFMGFVSYDKALKNLSEALQ 237

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.902	0.836	0.532	3e-53
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.888	0.741	0.525	5.6e-52
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.930	0.672	0.502	1.5e-51
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.805	0.639	0.448	1.4e-39
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.736	0.716	0.415	1.6e-31
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.736	0.726	0.396	5.4e-31
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.736	0.757	0.383	1.3e-29

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 105/197 (53%), Positives = 145/197 (73%)

Query:     9 NNPYLRLT-PLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDA 67
             +NPY+ +T P  AS  RS  ++ E+LNRCGK+ EDATRKAE L   +  HL+ SP +SDA
Sbjct:    28 DNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDA 87

Query:    68 AMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMA 127
             AMA+++QGTK+  EGG E+VFQ+EF  LA EKLL ++ CYIST++GPV G +YIS +R+A
Sbjct:    88 AMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIA 147

Query:   128 FCSDYPLSHYSSSGQQEWV-YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 186
             FCSDY +   SS+G      Y+KVV++ +++ +++ S N   PSE+Y+H+VTRDG+EFWF
Sbjct:   148 FCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWF 207

Query:   187 MGFISYDKALKTLTEAL 203
             MGF+SY  A   L +AL
Sbjct:   208 MGFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/196 (52%), Positives = 141/196 (71%)

Query:     9 NNPYLRLTPLPASGNRSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAA 68
             +NPY+  +P PA  N +   + + L + GK   DAT+KAE LA N W HL+  P ++DAA
Sbjct:    64 SNPYV--SPSPAPRN-TMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAA 120

Query:    69 MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 128
             +++IAQGTK+  EGGYEKVF+Q F  L  EKLLK YACY+STS GPV+G +Y+ST ++AF
Sbjct:   121 VSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAF 180

Query:   129 CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 188
              SD PLS Y    Q  W Y+KVV+  +QL+ VNPS +R N S+KYI V++ D +EFWFMG
Sbjct:   181 SSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239

Query:   189 FISYDKALKTLTEALR 204
             F++Y+ A+K+L EA++
Sbjct:   240 FVTYESAVKSLQEAVQ 255

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 104/207 (50%), Positives = 144/207 (69%)

Query:     2 SSDNYNNNNPYLRLTPLPASGNRSWGEICE----MLNRCGKRFEDATRKAECLADNVWHH 57
             +S +   +NPY+  +P   S + S  +  E    +L R GKR  +A +K E LA N W H
Sbjct:    88 ASSSSAGSNPYIARSPAETS-DASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQH 146

Query:    58 LRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIG 117
             LR +P  +DAAM +IAQ TKVF EGGYEK+F+Q F     E+LL ++ACY+STS GPV+G
Sbjct:   147 LRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMG 206

Query:   118 TLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVV 177
              LYIS+ ++A+CSD PLS Y +  Q EW Y+KVV+ L QL+ VNPSA+  NP+EKYI V+
Sbjct:   207 VLYISSAKLAYCSDNPLS-YKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVI 265

Query:   178 TRDGYEFWFMGFISYDKALKTLTEALR 204
             + D +EFWFMGF++YD A+ +L ++L+
Sbjct:   266 SVDNHEFWFMGFLNYDGAVTSLQDSLQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 78/174 (44%), Positives = 111/174 (63%)

Query:    40 FEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEK 99
             F   +RKAE +A N+WH+L+  P +S+ A  K+    K  T+GG+E +F+Q F     E 
Sbjct:    97 FHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNET 156

Query:   100 LLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRT 159
             L K +ACY+ST+ GPV GT+Y+S  R+AFCSD PL   + SGQ+ W Y++VVV L  + T
Sbjct:   157 LKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVAT 216

Query:   160 VNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 213
             VNP   +  P EKYI + T DG++FWFMGF++Y+KA   L  ++  F    G +
Sbjct:   217 VNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQTAHGSV 270

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 66/159 (41%), Positives = 100/159 (62%)

Query:    45 RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 104
             +K +   + V    +I P+L++    K++ G ++   GG EK+F++ F    GEKL K Y
Sbjct:    54 KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMY 113

Query:   105 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 164
              CY+ST+ GP+ G L+IS+++MAFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct:   114 QCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQ 173

Query:   165 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 203
             N   PS+KY+ VVT DG++FWFMGF+SY KA   L +AL
Sbjct:   174 NTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKAL 212

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 63/159 (39%), Positives = 101/159 (63%)

Query:    45 RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 104
             +K +   + V    ++ P+L++    K++ G ++   GG EK++++ F     EKL KAY
Sbjct:    55 KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query:   105 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 164
              CY+ST+ GP+ G L+IS++++AFCS+  +   S  G+   V++KV + L ++  VN S 
Sbjct:   115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query:   165 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 203
             N   PS+KY+ VVT DG++FWFMGF+SY KA   L +AL
Sbjct:   175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQAL 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query:    45 RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 104
             +K +   +      ++ P+L++    K++ G K+   GG EK++++ F     EKL KAY
Sbjct:    47 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query:   105 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 164
              CY+ST+ G + G L+IS++++AFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct:   107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query:   165 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 203
             N   PS++Y+ VVT D Y+FWFMGF+SY KA   L +AL
Sbjct:   167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      216       216   0.00088  112 3  11 22  0.37    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  204 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.81u 0.07s 18.88t   Elapsed:  00:00:13
  Total cpu time:  18.81u 0.07s 18.88t   Elapsed:  00:00:15
  Start:  Thu May  9 21:01:29 2013   End:  Thu May  9 21:01:44 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M122	GEML2_ARATH	No assigned EC number	0.5329	0.9027	0.8369	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	7e-82
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	7e-09
pfam02893	60	pfam02893, GRAM, GRAM domain	9e-07
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	1e-06

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  239 bits (612), Expect = 7e-82
 Identities = 76/125 (60%), Positives = 92/125 (73%)

Query: 80  TEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSS 139
            EGG EKVF+Q F    GEKLLKA  CY+ST+ GPV GTL+IST ++AFCSD PLS  S 
Sbjct: 2   QEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTSP 61

Query: 140 SGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTL 199
           SGQ    Y+KVV+ L +++ VNPS N  NPSEKYI +VT DG+EFWFMGF++Y KA K L
Sbjct: 62  SGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKYL 121

Query: 200 TEALR 204
            +AL 
Sbjct: 122 QQALS 126

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 49.9 bits (120), Expect = 7e-09
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 95  LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDL 154
              EKL+  Y+CY+S   GPV G LYIS  R+ F S+ P               KVV+ L
Sbjct: 3   PEEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGK-----------LTKVVIPL 50

Query: 155 DQLRTVNPS 163
             +  +  S
Sbjct: 51  ADITRIEKS 59

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 44.2 bits (105), Expect = 9e-07
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 95  LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSD 131
              EKL+  Y+CY+     PV G LY++  R+ F SD
Sbjct: 2   PPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSD 38

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 98  EKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVV---DL 154
           EK    Y C      GPV GTLY++  R+ F S                  ++ V    +
Sbjct: 2   EKKDVTYICP--FHVGPVEGTLYLTNYRLYFKSKER-----------DSPTELDVPLGVI 48

Query: 155 DQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 203
            ++  V  S++  N     + +  +D        F   D + + + E L
Sbjct: 49  SRVEKVGGSSSGENS--YGLEITCKD-MRNLRFAFKQEDHSRRDIFELL 94

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.35
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.18
PF14470	96	bPH_3: Bacterial PH domain	95.96
KOG4347	671	consensus GTPase-activating protein VRP [General f	85.81

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.35  E-value=4.8e-13  Score=94.18  Aligned_cols=66  Identities=29%  Similarity=0.506  Sum_probs=45.7

Q ss_pred             eeeecccCCccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccC
Q 027984           87 VFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNP  162 (216)
Q Consensus        87 iFkQ~F~~~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnp  162 (216)
                      -|++.|...++|+|...+.|+|..+.+|+.|.||||+.+++|+|+.+-.-.          ++++|||..|..|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            589999999999999999999999999999999999999999998665422          799999999998853

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.18  E-value=2e-11  Score=84.07  Aligned_cols=58  Identities=41%  Similarity=0.690  Sum_probs=50.5

Q ss_pred             CCccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccC
Q 027984           94 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNP  162 (216)
Q Consensus        94 ~~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnp  162 (216)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-...          .+++|||+.|.+|+.
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k   59 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEK   59 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEE
Confidence            4689999999999999 679999999999999999997665422          199999999999864

>PF14470 bPH_3: Bacterial PH domain

Probab=95.96  E-value=0.057  Score=39.02  Aligned_cols=94  Identities=16%  Similarity=0.136  Sum_probs=66.7

Q ss_pred             CccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceE
Q 027984           95 LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI  174 (216)
Q Consensus        95 ~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYI  174 (216)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-.++.     +     .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~-----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG-----G-----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC-----C-----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            57899999999988877788999999999999999874332     1     23489999999999776443   34679


Q ss_pred             EEEEecCceeeeeecccHHHHHHHHHHHHh
Q 027984          175 HVVTRDGYEFWFMGFISYDKALKTLTEALR  204 (216)
Q Consensus       175 qIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~  204 (216)
                      .|.| ++..+= ++.+. .+-++-+-+.|+
T Consensus        69 ~i~~-~~~~~~-i~~i~-k~~~~~~~~~i~   95 (96)
T PF14470_consen   69 TIET-NGEKIK-IDNIQ-KGDVKEFYEYIK   95 (96)
T ss_pred             EEEE-CCEEEE-EEEcC-HHHHHHHHHHHh
Confidence            9888 544443 35443 333344444443

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=85.81  E-value=0.86  Score=46.43  Aligned_cols=97  Identities=24%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             ecccCCccchhhhhhcceeecCCCc--ceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCC
Q 027984           90 QEFHKLAGEKLLKAYACYISTSNGP--VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRW  167 (216)
Q Consensus        90 Q~F~~~~~EkLlKa~~CYLSTsaGP--VaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~  167 (216)
                      -.|...  |+|.-.-.|=|-|..-|  ..|-||+||..++|.||-+=.            -.+++||.-|+.|.-.. ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~------------c~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL------------CSFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc------------ceEeeehhhhhhhhccC-cc
Confidence            456655  99999999999997774  899999999999999997654            25899999999996554 22


Q ss_pred             CCCCceEEEEEecCceeeeeecccHHHHHHHHHH
Q 027984          168 NPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTE  201 (216)
Q Consensus       168 ~P~eKYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~  201 (216)
                      +--+.=|-+.|..+-.|-|-|...=++.+.-++.
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~  112 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLHL  112 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHHhc
Confidence            2222336678889999999999887777765553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	92.37
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	90.03
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	84.21

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=92.37  E-value=0.39  Score=45.90  Aligned_cols=102  Identities=20%  Similarity=0.185  Sum_probs=61.6

Q ss_pred             ccCCccchhhhhhcc--eeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCC
Q 027984           92 FHKLAGEKLLKAYAC--YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP  169 (216)
Q Consensus        92 F~~~~~EkLlKa~~C--YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P  169 (216)
                      |...|||.++..-.-  |+..-.|++.|+|||++-|+.|.++..      + .    .+.+-|||..|..|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~-~----~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P----PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------C-c----cEEEEeeccceEEEEEcCCCCcC
Confidence            567899998855211  555557899999999999999999521      1 1    23568999887777543211111


Q ss_pred             --CCceEEEEEecCceeeeeecccHHHHHHHHHHHHhc
Q 027984          170 --SEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRR  205 (216)
Q Consensus       170 --~eKYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~~  205 (216)
                        .--.|+|..-|- ..+=.+|-.=+...+.+-++|++
T Consensus        76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~  112 (528)
T 1zsq_A           76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK  112 (528)
T ss_dssp             STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred             CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHH
Confidence              112477777664 44444565433323444455554

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=90.03  E-value=0.69  Score=45.48  Aligned_cols=120  Identities=20%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             hhhceeeeecCCcceeeeecccCCccchhhhhhc-c-eeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEE
Q 027984           72 IAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYA-C-YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFK  149 (216)
Q Consensus        72 lslGakil~~GG~ekiFkQ~F~~~~~EkLlKa~~-C-YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYK  149 (216)
                      +.+.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|.+...        +.   .+.
T Consensus        60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~  127 (657)
T 1lw3_A           60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV  127 (657)
T ss_dssp             ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred             hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence            44444455554322 1122477899999985421 1 444456899999999999999998521        11   234


Q ss_pred             EeeeccccccccCCCCCCCCCC--ceEEEEEecCceeeeeecccHHHHHHHHHHHHh
Q 027984          150 VVVDLDQLRTVNPSANRWNPSE--KYIHVVTRDGYEFWFMGFISYDKALKTLTEALR  204 (216)
Q Consensus       150 VvIPL~kik~vnps~n~~~P~e--KYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~  204 (216)
                      +-|||..|..|..........+  -.|+|..-|- ..+=.+|-.=+...+.+-++|.
T Consensus       128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~  183 (657)
T 1lw3_A          128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLM  183 (657)
T ss_dssp             EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHH
T ss_pred             EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHH
Confidence            6799988877765322111111  2477766664 4444456533222333334443

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=84.21  E-value=1.2  Score=35.33  Aligned_cols=51  Identities=22%  Similarity=0.182  Sum_probs=35.5

Q ss_pred             CCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceE
Q 027984          112 NGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI  174 (216)
Q Consensus       112 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYI  174 (216)
                      +.--.|+||++|.||-|-.+.. .           ..-+.|||..|+.+...+..-..+-|++
T Consensus        35 ~~~k~G~l~LTshRli~~d~~~-~-----------~~s~~lpl~~v~~~e~~~~~f~~s~Ki~   85 (140)
T 2hth_B           35 IKFDAGTLLLSTHRLIWRDQKN-H-----------ECCMAILLSQIVFIEEQAAGIGKSAKIV   85 (140)
T ss_dssp             SCCCCEEEEEESSEEEEEETTC-C-----------SCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred             CCCcCCEEEEecCEEEEecCCC-C-----------ceEEEEEhHHeeeeeeeccccccCceEE
Confidence            3458899999999999965532 1           0237888888888877666555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.57
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	91.84

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0019  Score=48.52  Aligned_cols=101  Identities=21%  Similarity=0.268  Sum_probs=61.4

Q ss_pred             Cccchhhhh--hcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCC--CCC
Q 027984           95 LAGEKLLKA--YACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRW--NPS  170 (216)
Q Consensus        95 ~~~EkLlKa--~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~--~P~  170 (216)
                      .|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++..       ..    .+.+-|||..|..|.......  +-.
T Consensus         6 lpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-------~~----~~~~~ipl~~I~~v~k~~~~~~~~~~   74 (125)
T d1zsqa1           6 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP----PFVLDASLGVINRVEKIGGASSRGEN   74 (125)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS----CEEEEEEGGGEEEEEEECCTTCCSTT
T ss_pred             CCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-------Cc----cEEEEeccceeeeeeecccccccCCc
Confidence            467765421  123566668999999999999999976421       11    123569999888886433222  122


Q ss_pred             CceEEEEEecCceeeeeecccHHHHHHHHHHHHhcCC
Q 027984          171 EKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP  207 (216)
Q Consensus       171 eKYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~~~~  207 (216)
                      --.|||..-|---+=|. |..=..-.+.+.++|++..
T Consensus        75 ~~~L~I~CKDfr~~~f~-f~~e~~~~~~v~~~L~~~a  110 (125)
T d1zsqa1          75 SYGLETVCKDIRNLRFA-HKPEGRTRRSIFENLMKYA  110 (125)
T ss_dssp             CSEEEEEETTTEEEEEE-CCGGGCCHHHHHHHHHHHS
T ss_pred             cccEEEEeccCeEEEEE-EcCCccHHHHHHHHHHHhC
Confidence            23699999886655543 3211122345777777654

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.34  Score=35.82  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=55.5

Q ss_pred             ceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceEEEEEecCceeeeeecccHHH
Q 027984          115 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDK  194 (216)
Q Consensus       115 VaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvnY~K  194 (216)
                      ..|+|||++.+|+|..+.+=.            -+|.+++..|+.-..|-  +..+.-=++||.-|+-.|=|- |.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~------------~~v~~~~~~I~~~q~Sp--e~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR------------FTISHMYADIKCQKISP--EGKAKIQLQLVLHAGDTTNFH-FSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS------------CSEEEETTTEEEEEECC--TTCSSEEEEEEETTSCEEEEE-ECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCCCC------------ceEEEEhhhhhceecCC--CCcccceeEEEEeCCCeEEEE-ECChHH
Confidence            679999999999997754311            23789999998765443  444556699999998887774 788844


Q ss_pred             H-------HHHHHHHHhcCCC
Q 027984          195 A-------LKTLTEALRRFPD  208 (216)
Q Consensus       195 A-------~k~Lq~Al~~~~~  208 (216)
                      |       -.-||++|..++.
T Consensus        85 ~~~~Rd~iK~~Lq~~i~~~k~  105 (108)
T d2rnrb1          85 AVKERDAVKDLLQQLLPKFKR  105 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            3       3356677766553