Citrus Sinensis ID: 027985

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEccccccHHHHHHHHccccccccccccccEEcEEEEEEEccEEEEEEEEEcccccHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHcccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mataparaRADYDYLIKLLLIgdsgvgksclllrfsddsfttsFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYdvtdessfNNIRNWMRNIDQHAADNVNKILVgnkadmdeskravptakgqELADEYGIKFFETsaktnfnvEQVFFSIAREIKQRLvesdskaepqtiriskpdpangsaaapeksaccgs
Flexible Loop (DISEMBL)
matapararaDYDYLIKLLLIGDSGVGKSCLLLRfsddsfttsfittigidfkirtieldgkriklqiwdtagqerFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGnkadmdeskravptakgqelADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRlvesdskaepqtiriskpdpangsaaapeksaccgs
Low Complexity Region (SEG)
MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRfsddsfttsfittigidfKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS
Disordered region (IsUnstruct)
*********ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVG*******************LADEYGIKFFETSAKTNFNVEQVFFSIAREIK**************************************
Disordered Region (DISOPRED)
*************YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI********************************KSACCG*
Disordered Region (DISEMBL)
********RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM*************ELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL***********IRISKP******************
Disordered Region (DISPRO)
*********ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE*********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
P28186	216	Ras-related protein RABE1	yes	no	0.953	0.953	0.878	1e-105
O24466	216	Ras-related protein RABE1	no	no	0.953	0.953	0.849	1e-103
Q9LZD4	216	Ras-related protein RABE1	no	no	0.986	0.986	0.878	1e-102
Q9SF91	218	Ras-related protein RABE1	no	no	0.990	0.981	0.865	1e-101
Q39433	215	Ras-related protein RAB1B	N/A	no	0.949	0.953	0.868	1e-100
P20790	208	Ras-related protein Rab-8	yes	no	0.953	0.990	0.694	4e-81
P20791	203	Ras-related protein Rab-8	no	no	0.930	0.990	0.671	1e-76
P36861	217	GTP-binding protein yptV2	N/A	no	0.949	0.944	0.608	2e-76
P17609	200	GTP-binding protein ypt2	yes	no	0.828	0.895	0.727	6e-74
P35280	207	Ras-related protein Rab-8	yes	no	0.828	0.864	0.677	4e-70

>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/206 (87%), Positives = 194/206 (94%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           DMDESKRAVPTAKGQ LADEYGIKFFETSAKTN NVE+VFFSI R+IKQRL ++DS+AEP
Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEP 190

Query: 191 QTIRISKPDPANGSAAAPEKSACCGS 216
            TI+IS+ D A G+  A +KSACCG+
Sbjct: 191 ATIKISQTDQAAGAGQATQKSACCGT 216

Involved in membrane trafficking from the Golgi to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/206 (84%), Positives = 195/206 (94%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+D+VNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKA 130

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           DMDESKRAVP +KGQ LADEYG+KFFETSAKTN NVE+VFFSIA++IKQRL ++D++AEP
Sbjct: 131 DMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEP 190

Query: 191 QTIRISKPDPANGSAAAPEKSACCGS 216
           QTI+I++ D   G++ A +KSACCG+
Sbjct: 191 QTIKINQSDQGAGTSQATQKSACCGT 216

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/214 (87%), Positives = 201/214 (93%), Gaps = 1/214 (0%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA APARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSDD+FTTSFITTIGIDFKIRT+ELD
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM+NI+QHA+DN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPTAKGQ LADEYGIKFFETSAKTN NVE VF SIA++IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
           L E+D+KAEPQ I+I+K D A  S+ A EKSACC
Sbjct: 181 LTETDTKAEPQGIKITKQDTAASSSTA-EKSACC 213

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/215 (86%), Positives = 202/215 (93%), Gaps = 1/215 (0%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA APARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSDD+FTTSFITTIGIDFKIRT+ELD
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM+NI+QHA+D+
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDS 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NVEQVF SIA++IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAP-EKSACC 214
           L ESD+KAEPQ I+I+K D    S+++  EKSACC
Sbjct: 181 LTESDTKAEPQGIKITKQDANKASSSSTNEKSACC 215

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/206 (86%), Positives = 189/206 (91%), Gaps = 1/206 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           DMDESKRAVPTAKGQ LADEYGIKFFETSAKTN NVE+VFFSIAR+IKQRL +SD++ E 
Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEA 190

Query: 191 QTIRISKPDPANGSAAAPEKSACCGS 216
           Q     KP   +G+ AA  KSACCGS
Sbjct: 191 QPSITIKPADQSGNQAAA-KSACCGS 215

Beta vulgaris (taxid: 161934)

>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1

 Score =  300 bits (769), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/213 (69%), Positives = 179/213 (84%), Gaps = 7/213 (3%)

Query: 3   TAPARAR-ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
           T+PA  + A YDYLIKLLLIGDSGVGKSCLLLRFS+DSFT SFITTIGIDFKIRTIEL+G
Sbjct: 2   TSPATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEG 61

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNW+RNI+QHA D+V
Sbjct: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSV 121

Query: 122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           NK+L+GNK DM E K+ V +++G+ LADEYGIKF ETSAK + NVE+ F S+A++IK+R+
Sbjct: 122 NKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRM 180

Query: 182 VESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
           +++ ++ +PQ ++      AN +    +K ACC
Sbjct: 181 IDTPNE-QPQVVQPGTNLGANNN----KKKACC 208

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1

 Score =  286 bits (731), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 175/213 (82%), Gaps = 12/213 (5%)

Query: 3   TAPARAR-ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
           T+PA  + A YD+L+KLLLIGDSGVGKSCLLLRFSD SFT SFI TIGIDFKIRTIEL+G
Sbjct: 2   TSPATNKPAAYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEG 61

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNW+RNI+QHA+D+V
Sbjct: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSV 121

Query: 122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           NK+L+GNK DM E K+ V +++G+ LADEYGIKF ETSAK + NVE+ F  +A++IK+R+
Sbjct: 122 NKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRM 180

Query: 182 VESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
           +++ +  +  TI I+   P N      +K+ CC
Sbjct: 181 IDTPNDPD-HTICIT---PNN------KKNTCC 203

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1

 Score =  285 bits (729), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/225 (60%), Positives = 169/225 (75%), Gaps = 20/225 (8%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA  P R   DYD LIKLLL+GDSGVGKSCLLLRF+DD FT+SFITTIGIDFKI+ +++D
Sbjct: 1   MARIPGRP--DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVD 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNWMRNI+QHA+DN
Sbjct: 59  GKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDN 118

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNK D+ E KR V  A+GQ LADE+G +F+ETSAK N +VE+ F ++A+++  R
Sbjct: 119 VNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLAR 178

Query: 181 L-----------VESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
           +            +  S A+P  +    P PA G        +CC
Sbjct: 179 MEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQG-------KSCC 216

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt2 PE=3 SV=1

 Score =  276 bits (707), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 156/180 (86%), Gaps = 1/180 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYLIKLLLIGDSGVGKSCLLLRFS+DSFT SFITTIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 6   YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N++QHA++NV KIL+GNK D
Sbjct: 66  AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQ 191
             E +R V   +GQ LADE G+KF E SAKTN NV++ FF++AREIK++ ++++++   Q
Sbjct: 126 C-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQ 184

Protein transport. Probably involved in vesicular traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2

 Score =  264 bits (674), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 154/180 (85%), Gaps = 1/180 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL KLLLIGDSGVGK+C+L RFS+D+F ++FI+TIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW+RNI++HA+ +V K+++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQ 191
           +++ KR V   +G++LA +YGIKF ETSAK N NVE  FF++AR+IK ++ +      PQ
Sbjct: 125 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQ 183

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
224284051	216	unknown [Picea sitchensis]	1.0	1.0	0.884	1e-110
225441149	216	PREDICTED: ras-related protein RABE1c [V	0.953	0.953	0.927	1e-109
871510	216	small GTP-binding protein [Pisum sativum	1.0	1.0	0.875	1e-109
357440493	216	Ras-like protein [Medicago truncatula] g	1.0	1.0	0.875	1e-109
357440489	216	Ras-like protein [Medicago truncatula] g	1.0	1.0	0.870	1e-108
18447921	216	ras-related protein RAB8-5 [Nicotiana ta	1.0	1.0	0.902	1e-108
2808638	216	small GTP-binding protein [Daucus carota	1.0	1.0	0.861	1e-107
18447917	216	ras-related protein RAB8-3 [Nicotiana ta	0.953	0.953	0.902	1e-106
225439876	216	PREDICTED: ras-related protein RABE1c [V	0.953	0.953	0.902	1e-106
225449603	216	PREDICTED: ras-related protein RABE1c [V	0.953	0.953	0.888	1e-105

>gi|224284051|gb|ACN39763.1| unknown [Picea sitchensis]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/216 (88%), Positives = 204/216 (94%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA+ PAR RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MASGPARGRADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPTA+GQ LADE+GIKFFETSAKTN NVEQVFF+IAR+IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTARGQALADEFGIKFFETSAKTNLNVEQVFFTIARDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
           L ESD+K EPQTI+I+KPDPA G   A E+S+CC S
Sbjct: 181 LAESDTKVEPQTIKINKPDPAKGPGKAAERSSCCTS 216

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441149|ref|XP_002267366.1| PREDICTED: ras-related protein RABE1c [Vitis vinifera] gi|297739984|emb|CBI30166.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/206 (92%), Positives = 200/206 (97%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYL+KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLVKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           DMDESKRAVPT++GQ LADEYGIKFFETSAKTNFNVEQVFFSIAR+IKQR+ ESDSKAEP
Sbjct: 131 DMDESKRAVPTSQGQALADEYGIKFFETSAKTNFNVEQVFFSIARDIKQRIAESDSKAEP 190

Query: 191 QTIRISKPDPANGSAAAPEKSACCGS 216
            TI+ISKPDPA GSA A EKSACCGS
Sbjct: 191 LTIKISKPDPAIGSATAQEKSACCGS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|871510|emb|CAA90080.1| small GTP-binding protein [Pisum sativum]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/216 (87%), Positives = 204/216 (94%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA  PARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NW+RNI+QHA+DN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NV++VFFSIAR+IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
           L E+DSK EPQT++I++PD   GSA A +KSACCGS
Sbjct: 181 LAETDSKTEPQTLKINQPDQGAGSAQATQKSACCGS 216

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440493|ref|XP_003590524.1| Ras-like protein [Medicago truncatula] gi|355479572|gb|AES60775.1| Ras-like protein [Medicago truncatula]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/216 (87%), Positives = 203/216 (93%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA  PARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NW+RNI+QHA+DN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NVE+VFFSIAR+IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
           L ESDSK EPQT++I++PD   GSA A + S+CCGS
Sbjct: 181 LAESDSKTEPQTLKINQPDQGAGSAQASQTSSCCGS 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440489|ref|XP_003590522.1| Ras-like protein [Medicago truncatula] gi|355479570|gb|AES60773.1| Ras-like protein [Medicago truncatula] gi|388512621|gb|AFK44372.1| unknown [Medicago truncatula]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/216 (87%), Positives = 203/216 (93%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA  PARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NW+RNI+QHA+DN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NV++VFFSIAR+IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
           L ESDSK EPQT++I++PD   GSA A + S+CCGS
Sbjct: 181 LAESDSKTEPQTLKINQPDQGAGSAQASQTSSCCGS 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18447921|dbj|BAB84326.1| ras-related protein RAB8-5 [Nicotiana tabacum]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/216 (90%), Positives = 206/216 (95%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MAT PARARADYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MATPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
            KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DN
Sbjct: 61  SKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NVE+VFFSIAR+IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
           L ESDSKAEPQTIRI++PD A G+A + +KSACCGS
Sbjct: 181 LAESDSKAEPQTIRINQPDQAAGAAQSAQKSACCGS 216

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2808638|emb|CAA04701.1| small GTP-binding protein [Daucus carota]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/216 (86%), Positives = 202/216 (93%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA  PAR RADYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIE+D
Sbjct: 1   MAAPPARPRADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEMD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNKILVGNKADMDESKRAVPT+KGQ LADEYGIKFFE SAKTN NVE+VFFSIA++IKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFEASAKTNMNVEEVFFSIAKDIKQR 180

Query: 181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
           L E+DSK EPQTI+I++ +   G++AA +KSACCGS
Sbjct: 181 LAETDSKTEPQTIKINQQEQGAGTSAASQKSACCGS 216

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18447917|dbj|BAB84324.1| ras-related protein RAB8-3 [Nicotiana tabacum]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/206 (90%), Positives = 198/206 (96%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           DMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NVE+VFFSIAR+IKQRL ESDSKAEP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAESDSKAEP 190

Query: 191 QTIRISKPDPANGSAAAPEKSACCGS 216
           QTIRI++PD A G++ + +KSACCGS
Sbjct: 191 QTIRINQPDQAAGASQSVQKSACCGS 216

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439876|ref|XP_002278842.1| PREDICTED: ras-related protein RABE1c [Vitis vinifera] gi|297741550|emb|CBI32682.3| unnamed protein product [Vitis vinifera]

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/206 (90%), Positives = 194/206 (94%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           DMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NVE+VFFSI R+IKQRL E+DSKAEP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLAETDSKAEP 190

Query: 191 QTIRISKPDPANGSAAAPEKSACCGS 216
            TIRI+ PD A GSA  P KSACCGS
Sbjct: 191 HTIRINPPDHAAGSAETPAKSACCGS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449603|ref|XP_002284071.1| PREDICTED: ras-related protein RABE1c [Vitis vinifera] gi|296086273|emb|CBI31714.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/206 (88%), Positives = 196/206 (95%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSD SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           DMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NVE+VFFSIA++IKQRL E+DSKAEP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAETDSKAEP 190

Query: 191 QTIRISKPDPANGSAAAPEKSACCGS 216
           QTI+I++PD A     AP+KSACCGS
Sbjct: 191 QTIKINQPDQAANGGQAPQKSACCGS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2075251	216	RABE1c [Arabidopsis thaliana (	1.0	1.0	0.796	6.7e-88
TAIR|locus:2168103	216	AT5G59840 [Arabidopsis thalian	1.0	1.0	0.791	1.4e-87
TAIR|locus:2142684	216	RAB8C "RAB GTPase homolog 8C"	0.986	0.986	0.799	1.6e-86
TAIR|locus:2084056	216	RAB8 "RAB GTPase homolog 8" [A	1.0	1.0	0.768	4.3e-86
TAIR|locus:2085089	218	RABE1e "RAB GTPase homolog E1E	0.990	0.981	0.786	1.8e-85
DICTYBASE|DDB_G0280043	208	rab8A "Rab GTPase" [Dictyostel	0.953	0.990	0.619	1.8e-64
DICTYBASE|DDB_G0276399	203	rab8B "Rab GTPase" [Dictyostel	0.930	0.990	0.600	2.1e-61
POMBASE|SPAC9E9.07c	200	ypt2 "GTPase Ypt2" [Schizosacc	0.828	0.895	0.638	6.6e-58
ASPGD|ASPL0000069804	206	srgA [Emericella nidulans (tax	0.925	0.970	0.590	2.8e-57
UNIPROTKB|P61007	207	RAB8A "Ras-related protein Rab	0.888	0.927	0.580	5.3e-56

TAIR|locus:2075251 RABE1c [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 172/216 (79%), Positives = 185/216 (85%)

Query:     1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
             MA  PARARADYDYLIKLLLIGDSGVGKSCLLLR                  KIRTIELD
Sbjct:     1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
             GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DN
Sbjct:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query:   121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             VNKILVGNKADMDESKRAVPTAKGQ LADEYGIKFFETSAKTN NVE+VFFSI R+IKQR
Sbjct:   121 VNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQR 180

Query:   181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
             L ++DS+AEP TI+IS+ D A G+  A +KSACCG+
Sbjct:   181 LSDTDSRAEPATIKISQTDQAAGAGQATQKSACCGT 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009873 "ethylene mediated signaling pathway" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2168103 AT5G59840 [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 171/216 (79%), Positives = 185/216 (85%)

Query:     1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
             MA  PARARADYDYLIKLLLIGDSGVGKSCLLLR                  KIRTIELD
Sbjct:     1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
             GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+DN
Sbjct:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query:   121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             VNKILVGNKADMDESKRAVP +KGQ LADEYGIKFFETSAKTN NVE+VFFSIA++IKQR
Sbjct:   121 VNKILVGNKADMDESKRAVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQR 180

Query:   181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
             L ++DS+AEP TI+IS+ D A G+  A +KSACCGS
Sbjct:   181 LADTDSRAEPATIKISQTDQAAGAGQATQKSACCGS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2142684 RAB8C "RAB GTPase homolog 8C" [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 171/214 (79%), Positives = 183/214 (85%)

Query:     1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
             MA APARAR+DYDYLIKLLLIGDSGVGKSCLLLR                  KIRT+ELD
Sbjct:     1 MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
             GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM+NI+QHA+DN
Sbjct:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDN 120

Query:   121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             VNKILVGNKADMDESKRAVPTAKGQ LADEYGIKFFETSAKTN NVE VF SIA++IKQR
Sbjct:   121 VNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQR 180

Query:   181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
             L E+D+KAEPQ I+I+K D A  S+ A EKSACC
Sbjct:   181 LTETDTKAEPQGIKITKQDTAASSSTA-EKSACC 213

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2084056 RAB8 "RAB GTPase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 166/216 (76%), Positives = 186/216 (86%)

Query:     1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
             MA  PARARADYDYLIKLLLIGDSGVGKSCLLLR                  KIRTIELD
Sbjct:     1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
             GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW+RNI+QHA+D+
Sbjct:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDS 120

Query:   121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             VNKILVGNKADMDESKRAVP +KGQ LADEYG+KFFETSAKTN NVE+VFFSIA++IKQR
Sbjct:   121 VNKILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQR 180

Query:   181 LVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216
             L ++D++AEPQTI+I++ D   G++ A +KSACCG+
Sbjct:   181 LADTDARAEPQTIKINQSDQGAGTSQATQKSACCGT 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2085089 RABE1e "RAB GTPase homolog E1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 169/215 (78%), Positives = 184/215 (85%)

Query:     1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
             MA APARAR+DYDYLIKLLLIGDSGVGKSCLLLR                  KIRT+ELD
Sbjct:     1 MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
             GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM+NI+QHA+D+
Sbjct:    61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDS 120

Query:   121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             VNKILVGNKADMDESKRAVPT+KGQ LADEYGIKFFETSAKTN NVEQVF SIA++IKQR
Sbjct:   121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQR 180

Query:   181 LVESDSKAEPQTIRISKPDPANGSAAAP-EKSACC 214
             L ESD+KAEPQ I+I+K D    S+++  EKSACC
Sbjct:   181 LTESDTKAEPQGIKITKQDANKASSSSTNEKSACC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0280043 rab8A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 132/213 (61%), Positives = 162/213 (76%)

Query:     3 TAPARAR-ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG 61
             T+PA  + A YDYLIKLLLIGDSGVGKSCLLLR                  KIRTIEL+G
Sbjct:     2 TSPATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEG 61

Query:    62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
             KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNW+RNI+QHA D+V
Sbjct:    62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSV 121

Query:   122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
             NK+L+GNK DM E K+ V +++G+ LADEYGIKF ETSAK + NVE+ F S+A++IK+R+
Sbjct:   122 NKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRM 180

Query:   182 VESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
             +++ ++ +PQ ++      AN +    +K ACC
Sbjct:   181 IDTPNE-QPQVVQPGTNLGANNN----KKKACC 208

GO:0033298 "contractile vacuole organization" evidence=IGI

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0050708 "regulation of protein secretion" evidence=IMP

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0276399 rab8B "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 128/213 (60%), Positives = 160/213 (75%)

Query:     3 TAPARAR-ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG 61
             T+PA  + A YD+L+KLLLIGDSGVGKSCLLLR                  KIRTIEL+G
Sbjct:     2 TSPATNKPAAYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEG 61

Query:    62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
             KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNW+RNI+QHA+D+V
Sbjct:    62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSV 121

Query:   122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
             NK+L+GNK DM E K+ V +++G+ LADEYGIKF ETSAK + NVE+ F  +A++IK+R+
Sbjct:   122 NKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRM 180

Query:   182 VESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
             +++ +  +  TI I+   P N      +K+ CC
Sbjct:   181 IDTPNDPD-HTICIT---PNN------KKNTCC 203

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

POMBASE|SPAC9E9.07c ypt2 "GTPase Ypt2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 115/180 (63%), Positives = 139/180 (77%)

Query:    12 YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
             YDYLIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDT
Sbjct:     6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65

Query:    72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
             AGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N++QHA++NV KIL+GNK D
Sbjct:    66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125

Query:   132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQ 191
               E +R V   +GQ LADE G+KF E SAKTN NV++ FF++AREIK++ ++++++   Q
Sbjct:   126 C-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQ 184

GO:0003924 "GTPase activity" evidence=TAS

GO:0005525 "GTP binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006887 "exocytosis" evidence=IMP

GO:0006893 "Golgi to plasma membrane transport" evidence=ISO

GO:0006906 "vesicle fusion" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

ASPGD|ASPL0000069804 srgA [Emericella nidulans (taxid:162425)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 121/205 (59%), Positives = 147/205 (71%)

Query:    11 DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
             +YD+LIKLLLIGDSGVGKSC LLR                  KIRTIELDGKR+KLQIWD
Sbjct:     6 NYDFLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWD 65

Query:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
             TAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIR W  N++QHA++ V+KIL+GNK 
Sbjct:    66 TAGQERFRTITTAYYRGAMGILLVYDVTDERSFQNIRTWFSNVEQHASEGVHKILIGNKC 125

Query:   131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
             D +E KRAV T +GQ+LADE GI F E SAK N N+E+ F+++A +IK+ + +S    + 
Sbjct:   126 DWEE-KRAVTTEQGQQLADELGIPFLEVSAKNNINIEKAFYNLASDIKKGM-DSSKPEQT 183

Query:   191 QTIRISKPDPANG-SAAAPEKSACC 214
              +  +S  + A+G S  A  K  CC
Sbjct:   184 GSQGVSIDNQASGLSGNAGGK--CC 206

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=IEA

UNIPROTKB|P61007 RAB8A "Ras-related protein Rab-8A" [Canis lupus familiaris (taxid:9615)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 115/198 (58%), Positives = 148/198 (74%)

Query:    12 YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
             YDYL KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDT
Sbjct:     5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64

Query:    72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
             AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW+RNI++HA+ +V K+++GNK D
Sbjct:    65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124

Query:   132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL---VESDS-K 187
             +++ KR V   +G++LA +YGIKF ETSAK N NVE  FF++AR+IK ++   +E +S +
Sbjct:   125 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQ 183

Query:   188 AEPQTIRISKPDPANGSA 205
                Q ++I+ PD    S+
Sbjct:   184 GSNQGVKIT-PDQQKRSS 200

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61007	RAB8A_CANFA	No assigned EC number	0.6414	0.8888	0.9275	yes	no
P61006	RAB8A_HUMAN	No assigned EC number	0.6414	0.8888	0.9275	yes	no
Q05974	RAB1A_LYMST	No assigned EC number	0.5970	0.9120	0.9609	N/A	no
P41924	RYL1_YARLI	No assigned EC number	0.6936	0.7962	0.8472	yes	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.5913	0.9166	0.9753	N/A	no
Q5R4A3	RAB8A_PONAB	No assigned EC number	0.6414	0.8888	0.9275	yes	no
P20790	RAB8A_DICDI	No assigned EC number	0.6948	0.9537	0.9903	yes	no
A4FV54	RAB8A_BOVIN	No assigned EC number	0.6363	0.8888	0.9275	yes	no
Q01890	YPT1_PHYIN	No assigned EC number	0.5845	0.9027	0.9701	N/A	no
Q9SF91	RAE1E_ARATH	No assigned EC number	0.8651	0.9907	0.9816	no	no
P28186	RAE1C_ARATH	No assigned EC number	0.8786	0.9537	0.9537	yes	no
P35280	RAB8A_RAT	No assigned EC number	0.6777	0.8287	0.8647	yes	no
P17609	YPT2_SCHPO	No assigned EC number	0.7277	0.8287	0.895	yes	no
P36861	YPTV2_VOLCA	No assigned EC number	0.6088	0.9490	0.9447	N/A	no
P55258	RAB8A_MOUSE	No assigned EC number	0.6777	0.8287	0.8647	yes	no
P33723	YPT1_NEUCR	No assigned EC number	0.5931	0.9259	0.9852	N/A	no
O24466	RAE1A_ARATH	No assigned EC number	0.8495	0.9537	0.9537	no	no
Q4R5P1	RAB8A_MACFA	No assigned EC number	0.6414	0.8888	0.9275	N/A	no
Q4R8X3	RAB1B_MACFA	No assigned EC number	0.5804	0.9120	0.9800	N/A	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.5922	0.9166	0.9753	N/A	no
Q9LZD4	RAE1D_ARATH	No assigned EC number	0.8785	0.9861	0.9861	no	no
P31584	YPTV1_VOLCA	No assigned EC number	0.5931	0.9259	0.9852	N/A	no
Q39433	RB1BV_BETVU	No assigned EC number	0.8689	0.9490	0.9534	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-121
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-101
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-99
pfam00071	162	pfam00071, Ras, Ras family	2e-99
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-92
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-78
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-76
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-73
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	5e-71
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-70
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-67
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-65
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-65
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-64
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-64
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-62
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-62
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-61
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-59
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-58
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-57
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	4e-57
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-57
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-56
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	7e-55
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-54
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-53
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-53
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-51
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-46
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-46
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	9e-46
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-44
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-43
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-41
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	9e-41
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-39
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-38
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-37
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-37
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-36
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-36
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-35
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-35
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-34
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-34
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-34
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-33
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-33
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-33
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-33
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-33
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-33
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-32
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-30
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-30
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	9e-30
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-29
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-29
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-28
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	5e-28
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-26
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-26
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	7e-25
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-24
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-24
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	8e-24
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	8e-24
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-23
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-22
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-21
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-21
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-20
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	7e-19
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-18
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-17
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-17
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	4e-17
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-16
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-15
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-14
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-13
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	4e-13
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	6e-12
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-10
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	6e-09
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-08
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-08
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-08
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	7e-08
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-07
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	3e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	8e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-06
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	7e-06
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	2e-05
cd00880	161	cd00880, Era_like, E	2e-04
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	2e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	0.001
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	0.002
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.002
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.002
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	0.004

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  340 bits (875), Expect = e-121
 Identities = 125/168 (74%), Positives = 148/168 (88%), Gaps = 1/168 (0%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           DYL KLLLIGDSGVGKSCLLLRFS+DSF  SFI+TIGIDFKIRTIELDGK+IKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFRTITT+YYRGAMGI+LVYD+TDE SF NI+NWMRNID+HA+++V ++LVGNK DM
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +E KR V   +G+ LA EYGIKF ETSAK N NVE+ F ++A++I ++
Sbjct: 121 EE-KRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  288 bits (740), Expect = e-101
 Identities = 113/167 (67%), Positives = 142/167 (85%), Gaps = 1/167 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           YL KLLLIGDSGVGKSCLLLRF+DD++T S+I+TIG+DFKIRTIELDGK +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133
           QERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK D+ 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             K+ V   + +E ADE GI F ETSAK   NVE+ F ++AREIK+R
Sbjct: 121 -DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  285 bits (732), Expect = 1e-99
 Identities = 96/165 (58%), Positives = 131/165 (79%), Gaps = 1/165 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++LIGDSGVGKS LL RF+D  F+  + +TIG+DFK +TIE+DGKR+KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR+IT++YYRGA+G LLVYD+T+  SF N+ NW++ + ++A+ NV  +LVGNK+D+ E 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDL-EE 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +R V   + +  A+E+G+ FFETSAKTN NVE+ F  +AREI +R
Sbjct: 120 QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  284 bits (730), Expect = 2e-99
 Identities = 93/163 (57%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD GVGKS LL+RF+ + F   +I TIG+DF  +TIE+DGK +KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           FR +   YYRGA G LLVYD+T   SF N++ W+  I +HA +NV  +LVGNK D+ E +
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDL-EDQ 119

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           R V T +G+ LA E G+ F ETSAKTN NVE+ F  +AREI +
Sbjct: 120 RVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  267 bits (684), Expect = 2e-92
 Identities = 92/160 (57%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++LIGDSGVGK+ LLLRF D+ F+ ++ +TIG+DFK +TIE+DGK++KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR+IT++YYRGA G +LVYDVT+  SF N+  W+  + ++A  N+  ILVGNK+D+ E 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDL-ED 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
           +R V T + Q+ A E G+ FFETSAKT  NV++ F S+AR
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  233 bits (596), Expect = 1e-78
 Identities = 105/204 (51%), Positives = 143/204 (70%), Gaps = 6/204 (2%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L KLL+IGDSGVGKS LLLRF+D++F+ S+ITTIG+DFKIRT+E++G+R+KLQIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT+  SF N++ W++ I+Q+  D+V K+LVGNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKN 120

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           D D  ++ V T    + A + GI  FETSAK N NVE++F  I   + +   ++ +K + 
Sbjct: 121 D-DPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQ 179

Query: 191 QTIRISKPDPANGSAAAPEKSACC 214
           Q        P N       K  CC
Sbjct: 180 QQQNDVVKLPKNSKR----KKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  227 bits (580), Expect = 2e-76
 Identities = 88/165 (53%), Positives = 118/165 (71%), Gaps = 1/165 (0%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           DYL K++LIGDSGVGKS LL RF+ + F     +TIG++F  RTI++DGK IK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQER+R IT+AYYRGA+G LLVYD+T +S+F N+  W++ +  HA  N+  +LVGNK+D+
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
               RAVPT + +  A++ G+ F ETSA    NVE+ F  +  EI
Sbjct: 121 -RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  218 bits (557), Expect = 4e-73
 Identities = 84/163 (51%), Positives = 120/163 (73%), Gaps = 3/163 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+LLIGDSGVGKS LLLRF+DD+F     +TIG+DFK++T+ +DGK++KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDE 134
           RFRT+T++YYRGA G++LVYDVT   +F+N+  W+  +D ++   +  K+LVGNK  +D+
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNK--IDK 118

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
             R V   +GQ+ A ++ + F ETSAKT   V+Q F  +  +I
Sbjct: 119 ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  213 bits (543), Expect = 5e-71
 Identities = 92/156 (58%), Positives = 124/156 (79%), Gaps = 1/156 (0%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + KLL+IG+S VGK+  L R++DDSFT++F++T+GIDFK++T+  + KRIKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134
           ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I  ++ DN   ILVGNK DM E
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-E 119

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
            +R V   +G++LAD+ G +FFE SAK N NV+QVF
Sbjct: 120 DERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  210 bits (537), Expect = 6e-70
 Identities = 89/166 (53%), Positives = 120/166 (72%), Gaps = 1/166 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +DGK+IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+  N+  +L+GNK D
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           + ES+R V   +G+  A E+G+ F ETSAKT  NVE+ F + A+EI
Sbjct: 121 L-ESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  203 bits (517), Expect = 4e-67
 Identities = 89/158 (56%), Positives = 124/158 (78%), Gaps = 1/158 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +LLLIGDSGVGK+CLL RF+D+ F +S I+TIG+DFK++TIE+DG ++++QIWDTAGQER
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           ++TIT  YYR A GI LVYD++ E S+ +I  W+ ++D++A + V KIL+GNKAD +E K
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQK 120

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           R V   +G +LA EYG+ FFETSA TN N+++ F  + 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  200 bits (510), Expect = 1e-65
 Identities = 86/168 (51%), Positives = 118/168 (70%), Gaps = 12/168 (7%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD----------G 61
           YDYLIKLL +GDSGVGK+  L R++D+ F   FITT+GIDF+ + +  +           
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADN 120
            R+ LQ+WDTAGQERFR++TTA++R AMG LL++D+T E SF N+RNWM  +  HA  +N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168
            + +L+GNKAD+   +R V   + +ELAD+YGI +FETSA T  NVE+
Sbjct: 121 PDIVLIGNKADL-PDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  200 bits (510), Expect = 3e-65
 Identities = 92/209 (44%), Positives = 129/209 (61%), Gaps = 7/209 (3%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA  N+  +L+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES--DSKAE 189
           +   +RAV T +G++ A E+G+ F E SAKT  NVE+ F   A +I +++ +   D   E
Sbjct: 123 LAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNE 181

Query: 190 PQTIRISKPDPAN----GSAAAPEKSACC 214
              I++               + +   CC
Sbjct: 182 SYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  197 bits (502), Expect = 1e-64
 Identities = 81/166 (48%), Positives = 118/166 (71%), Gaps = 2/166 (1%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D+L K++LIGDS VGK+C++ RF   +F+     TIG+DF ++T+E+ GKR+KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFRTIT +YYR A G ++ YD+T  SSF ++ +W+  ++++ A NV  +L+GNK D+
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 133 DESKRAVPTAKGQELADEYGIKF-FETSAKTNFNVEQVFFSIAREI 177
           +E +R V   +   LA+ YGI    ETSAK + NVE+ F  +A E+
Sbjct: 121 EE-QREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  197 bits (502), Expect = 2e-64
 Identities = 96/199 (48%), Positives = 133/199 (66%), Gaps = 10/199 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           K++L+GDSGVGK+CLL+RF D +F   SFI T+GI F  + + +DG ++KLQIWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++T AYYR A  +LL+YDVT++SSF+NIR W+  I ++A  +V  +L+GNKADM   
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADM-SG 120

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRI 195
           +R V    G+ LA EYG+ F ETSAKT  NVE  F ++A+E+K R VE   + + +    
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPKFKIQDY 180

Query: 196 SKPDPANGSAAAPEKSACC 214
            +           + S CC
Sbjct: 181 VE--------KQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  191 bits (488), Expect = 1e-62
 Identities = 78/161 (48%), Positives = 110/161 (68%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GDS VGKS ++LRF  + F+ +  +TIG  F  +T+ LD   +K +IWDTAGQER
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           +R++   YYRGA   ++VYD+T E SF   ++W++ + +H   N+   L GNKAD+ ESK
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADL-ESK 121

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           R V T + QE ADE G+ F ETSAKT  NV ++F  IAR++
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  192 bits (488), Expect = 2e-62
 Identities = 82/167 (49%), Positives = 118/167 (70%), Gaps = 1/167 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L K++LIG++GVGK+CL+ RF+   F      TIG+DF I+T+E+ G++IKLQIWD
Sbjct: 3   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWD 62

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R I+Q+A + V  ILVGNK 
Sbjct: 63  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKI 122

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D+ E +R V   + +E +D   + + ETSAK + NVE++F  +A  +
Sbjct: 123 DLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  191 bits (486), Expect = 1e-61
 Identities = 90/214 (42%), Positives = 131/214 (61%), Gaps = 5/214 (2%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKL 66
           R   +YDYL K++LIGDSGVGKS +L RF+ + F     +TIG++F  RT++++GK +K 
Sbjct: 4   RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 63

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV 126
           QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ 
Sbjct: 64  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123

Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDS 186
           GNK+D++   R+V    GQ LA++ G+ F ETSA    NVE+ F +I  EI   + +   
Sbjct: 124 GNKSDLNHL-RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKAL 182

Query: 187 KAEPQTIRISKPDPAN----GSAAAPEKSACCGS 216
            A+        P           +   K  CC +
Sbjct: 183 AAQEAAANSGLPGQGTTINVADTSGNNKRGCCST 216

Length = 216

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  184 bits (469), Expect = 4e-59
 Identities = 86/212 (40%), Positives = 127/212 (59%), Gaps = 12/212 (5%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTA 72
           Y  +L++IGDS VGKS LL RF++  F      T+G+DF  R IE+  G RIKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKAD 131
           GQERFR+IT +YYR ++G+LLV+D+T+  SF ++ +W+     H        ILVG+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE-- 189
           ++ S+R V   + ++LA + G+K+ ETSA+T  NVE+ F  + +EI +R+   +  A   
Sbjct: 121 LE-SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDG 179

Query: 190 ----PQTIRISKPDPANG---SAAAPEKSACC 214
                      +         + A+PEKS CC
Sbjct: 180 WDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  181 bits (462), Expect = 1e-58
 Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 1/166 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           Y+ K ++IGD GVGKSCLL +F++  F      TIG++F  R IE++G++IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133
           QERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +       N    L+GNKAD++
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
              R V   + ++ ADE G+ F E SAKT  NVE  F   A++I Q
Sbjct: 121 AQ-RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  179 bits (456), Expect = 3e-57
 Identities = 97/207 (46%), Positives = 128/207 (61%), Gaps = 11/207 (5%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD   K+LLIGDSGVGKS LL+ F   S       TIG+DFKI+ + + GKR+KL IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAAD-NVNKILVGNK 129
           AGQERFRT+T++YYR A GI+LVYDVT   +F N+ + W + ++ ++ + +  K+LVGNK
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ--RLVESDSK 187
            D  ES+R V   +G  LA E+G  F E SAKT  NVEQ F  +A +I +   L+E  S 
Sbjct: 130 VDR-ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGST 188

Query: 188 AEPQTIRISKPDPANGSAAAPEKSACC 214
           A  + I   KP+        P    CC
Sbjct: 189 AVKRNILKQKPE-----HQPPPNGGCC 210

Length = 211

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  177 bits (452), Expect = 4e-57
 Identities = 66/162 (40%), Positives = 104/162 (64%), Gaps = 1/162 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR+ ++ F     +T    F  +T+ + GKRI L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+  +   YYR A G +LVYD+TD  SF  ++ W++ + Q   +N++ ++VGNK D+ E 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL-ER 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +R V  ++ +E A   G K FETSAKT   +E++F S+A+ +
Sbjct: 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  176 bits (449), Expect = 9e-57
 Identities = 68/161 (42%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +GD  VGK+ ++ RF  D+F   +  TIGIDF  +T+ +D K ++LQ+WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+  SF+N   W+ ++     ++V  +LVGNK D+ + K
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-K 120

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           R V T +G++ A E    F ETSAK   NV+Q+F  IA+ +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  176 bits (448), Expect = 2e-56
 Identities = 78/161 (48%), Positives = 104/161 (64%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K L+IG +G GKSCLL +F ++ F      TIG++F  R + + GK +KLQIWDTAGQER
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           FR++T +YYRGA G LLVYD+T   SFN + NW+ +    A+ ++  ILVGNK D+++  
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLED-D 120

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           R V   +    A E G+ F ETSA T  NVE+ F   AR I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  173 bits (440), Expect = 7e-55
 Identities = 84/203 (41%), Positives = 139/203 (68%), Gaps = 5/203 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++++IG  GVGK+ L+ RF+DD+F  +  +T+G+DFKI+T+EL GK+I+LQIWDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RF +IT+AYYR A GI+LVYD+T + +F+++  WM+ ID++A+++   +LVGNK D  E+
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ET 119

Query: 136 KRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREIKQRL-VESDSKAEPQTI 193
            R +   +G++ A +  G++F E SAK NFNV+++F  +  +I +++ ++        +I
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSI 179

Query: 194 RISKPDPANGSAAAPEKSA--CC 214
              +P+P       P +    CC
Sbjct: 180 LSLQPEPEIPPELPPPRPHVRCC 202

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  170 bits (433), Expect = 4e-54
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 6/169 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + LQIWDTAGQER
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADM 132
           F+++  A+YRGA   +LVYDVT+  SF ++ +W       A+    +N   +++GNK D+
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 121

Query: 133 DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +E KR V T K Q+     G I +FETSAK   NV+Q F +IAR   ++
Sbjct: 122 EE-KRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQ 169

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  169 bits (430), Expect = 1e-53
 Identities = 78/168 (46%), Positives = 113/168 (67%), Gaps = 6/168 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+++IGDS VGK+CL  RF    F      TIG+DF+ RT+E+DG+RIK+Q+WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 77  FR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN-VNKILVGNKADMDE 134
           FR ++   YYR    ++ VYDVT+ +SF+++ +W+   +QH+  N V +ILVGNK D+ E
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAK---TNFNVEQVFFSIAREIKQ 179
             + VPT   Q  AD + +  FETSAK    N +VE +F ++A ++K 
Sbjct: 124 QIQ-VPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  168 bits (426), Expect = 6e-53
 Identities = 82/170 (48%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YDYL+K LL+GDS VGK  +L    D S  + +   +GID+K  TI LDG+R+KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           T+GQ RF TI  +Y RGA GI+LVYD+T+  SF+ I  W++ ID+HA   V KILVGN+ 
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRL 120

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            +   KR V T + Q  A+  G+ FFE S   NFN+ + F  +AR +  R
Sbjct: 121 HL-AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMR 169

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  163 bits (416), Expect = 1e-51
 Identities = 67/162 (41%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L +RF    F   +  TI  D   + I +DG+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDES 135
           F  +   Y R   G +LVY +T   SF  I+N    I      ++V  +LVGNK D++  
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
            R V T +G+ LA+E+G  F ETSAKTN N++++F ++ REI
Sbjct: 120 -RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  151 bits (384), Expect = 1e-46
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F   +  TI  D   + IE+DG+   L I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDES 135
           F  +   Y R   G LLVY +TD  SF  I+ +   I      D+V  +LVGNK D+ ES
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL-ES 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +R V T +G+ELA ++G  F ETSAK   NV++ F+ + REI+++
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  150 bits (381), Expect = 2e-46
 Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F   +  TI  D   + IE+DG+   L I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDES 135
           F  +   Y R   G LLVY +TD  SF  I  +   I      D+V  +LVGNK D+ E+
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDL-EN 121

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +R V T +G+ELA ++G  F ETSAK   NV++ F+ + REI++ 
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  150 bits (380), Expect = 9e-46
 Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 9/203 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAGQE 75
           K+L+IGD GVGK+ ++ R+    F+  +  TIG+DF ++ IE D   + +LQ+WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK----ILVGNKAD 131
           RF  +T  YY+GA+G ++V+DVT  S+F  +  W  ++D        +    +L+ NK D
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCD 121

Query: 132 MDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           + + + A    +  +   E G I +FETSAK N N+E+    + + I   L        P
Sbjct: 122 LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI---LKNDKGLQSP 178

Query: 191 QTIRISKPDPANGSAAAPEKSAC 213
           +    +  D    +  +  KS C
Sbjct: 179 EPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  147 bits (371), Expect = 3e-44
 Identities = 73/220 (33%), Positives = 105/220 (47%), Gaps = 20/220 (9%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           +    K++++GD GVGK+ LL R   D F   +  TIG     +TIE   + IKLQ+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           AGQE +R++   YYRGA GIL+VYD T  ESS      W+  + + A D+V  +LVGNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 131 D-----------MDESKRAVPTAKGQELADE---YGIKFFETSAK--TNFNVEQVFFSIA 174
           D           +++  R V        A           ETSAK  T  NV ++F  + 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 175 REIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
           R++ + + +   K E + +            AA     C 
Sbjct: 182 RKLLEEIEKLVLKNELRQLDRLNN---PIEQAALASFNCV 218

Length = 219

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  142 bits (360), Expect = 4e-43
 Identities = 54/167 (32%), Positives = 96/167 (57%), Gaps = 6/167 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++ +G+SGVGKSC++ R+ +  F + ++ TIGID+ ++ + +  K +++  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-----ILVGNKA 130
            +  +   +Y+   G+LLVYDVTD  SF  + +W++ + Q    + N      ++  NK 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D     RAV   +G+  A+  G K+FETSA T   V ++F ++   I
Sbjct: 121 D-LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  137 bits (347), Expect = 3e-41
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 14/167 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++GD  VGK+CLL+ ++ + F T ++ T+  D     + +DGK++ L +WDTAGQE
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQE 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      LL + V   SSF N++  W   I +H   NV  ILVG K D+  
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEI-KHYCPNVPIILVGTKIDLRD 118

Query: 133 DESKRA--------VPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           D +           +   +G++LA E G +K+ E SA T   +++VF
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  136 bits (344), Expect = 9e-41
 Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 7/168 (4%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++L+GD GVGKS L+ R+  + F T    TIG++F  + +E+DG  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI----DQHAADNVNKILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +      D    ++   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 131 DMDESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQVFFSIAREI 177
           D+   +R V T + Q    + G   +FETSAK   NV   F    R +
Sbjct: 125 DI--PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  133 bits (337), Expect = 1e-39
 Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 3/164 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L L+F  D F   +  T   D   + + LDG+ ++L I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDES 135
           +  I   Y+R   G LLV+ +TD  SF  +  +   I +    DNV  +LVGNK D+++ 
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED- 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           KR V   +   LA+++G+ + ETSAKT  NV++VFF + REI+Q
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  129 bits (327), Expect = 3e-38
 Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++   + F   +  TI  D   + + +DG+   L I DTAGQE 
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ +    SF +I  +   I +   +D+V  +LVGNK D+  +
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL--A 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
            R V T +GQ+LA  YGI + ETSAKT   VE+ F+++ REI+
Sbjct: 120 ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  127 bits (322), Expect = 1e-37
 Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAG 73
           IK++++G+  VGKS ++ RF    FT  +  TIG+DF  + I L    + ++L +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM- 132
           QE F  IT AYYRGA   +LV+  TD  SF  I +W   ++    D +  +LV  K D+ 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-IPMVLVQTKIDLL 119

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
           D++   +   + + LA    +  F TS K +FNV ++F
Sbjct: 120 DQA--VITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  127 bits (321), Expect = 3e-37
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 15/166 (9%)

Query: 18  LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           L+++GD  VGK+CLL+ ++ ++F   ++ T+  +     +E+DGK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM---- 132
             +    Y      L+ + V   +SF N++  W   + +H   NV  ILVG K D+    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV-KHFCPNVPIILVGTKLDLRNDK 118

Query: 133 -------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                   + +  V   +GQ LA   G +K+ E SA T   V +VF
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  125 bits (315), Expect = 2e-36
 Identities = 67/163 (41%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F T +  TI  D   +  E+DG+  +L I DTAGQE 
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQEE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y R   G LLV+ VTD  SF  +  +   I +    D    ILVGNKAD+ E 
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL-EH 121

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +R V   +GQELA +  I + ETSAK   NV++ F  + R I+
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  125 bits (316), Expect = 2e-36
 Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 4/176 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  + F   +  TI   ++ +   +D +   L I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEE 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L VY +T  SSF  I ++   I +    D V  ILVGNK D+D S
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-S 124

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQ 191
           +R V T +GQELA  +GI F ETSAK   NV++ F+ + REI++ L E D  ++ Q
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE-DMPSQKQ 179

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  122 bits (308), Expect = 2e-35
 Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD  VGK+CL+ RF  D F  ++  TIG+DF++   E+ G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN-IDQHAADNVNKILVGNKADMDE- 134
           F+ I + YYRGA  I++V+D+TD +S  + R W+ + + ++   +V   LVG K D+   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           ++ A+      +LA E   +++  SA T  NV   FF +A
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  122 bits (307), Expect = 3e-35
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 6/164 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F   +  TI  D   + IE+D ++  L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN--IDQHAADNVNKILVGNKADMDE 134
           F  +   Y +   G  LVY +T + SFN++++ +R   +     ++V  ILVGNK D+ E
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQD-LREQILRVKDTEDVPMILVGNKCDL-E 119

Query: 135 SKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            +R V   +GQ LA ++G   F ETSAK+  NV+++F+ + R+I
Sbjct: 120 DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  119 bits (301), Expect = 2e-34
 Identities = 61/162 (37%), Positives = 99/162 (61%), Gaps = 3/162 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F   +  TI   ++ + +E+DG++  L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y +   G +LVY +T +S+FN++++    I +    ++V  ILVGNK D+ E 
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 120

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +R V   +GQ LA ++G  F ETSAK   NV ++F+ + R+I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  119 bits (301), Expect = 3e-34
 Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 15/172 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFI----TTIGIDFKIRTIELDGKRIKLQIWDTA 72
           K+ ++G SGVGKS L +RF     T  FI      +   +  R + +DG+++ L+I DT 
Sbjct: 1   KIAVLGASGVGKSALTVRF----LTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTP 55

Query: 73  GQERFRT--ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGN 128
           GQ++           R A G +LVY +TD SSF+ +   ++ I +       +  ILVGN
Sbjct: 56  GQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGN 115

Query: 129 KADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN-VEQVFFSIAREIKQ 179
           KAD+  S R V T +GQ+LA E G  FFE SA  N+  V+ VF  + RE+++
Sbjct: 116 KADLLHS-RQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  119 bits (300), Expect = 6e-34
 Identities = 57/165 (34%), Positives = 94/165 (56%), Gaps = 5/165 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           +K++++G   VGK+ L+ R+    F    +  TIG  F  + + +  + + L IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM-- 132
           ER+  ++  YYRGA   ++ YD+TD SSF   + W++ + Q+  ++    L G K+D+  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-QNLEEHCKIYLCGTKSDLIE 119

Query: 133 -DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176
            D S R V     Q+ ADE   + FETS+KT  NV+++F  +A +
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAED 164

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  117 bits (296), Expect = 1e-33
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 4/163 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F  + F  S+  TI   ++ + +E+DG++  L+I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y +   G LLVY VT E+S N +      + +   +DNV  +LVGNKAD+ E 
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADL-ED 120

Query: 136 KRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            R V    G  L+ ++G + F+ETSA+   NV++VF  + R+I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  118 bits (297), Expect = 2e-33
 Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++F +  F  S+  TI   F  + I   G+   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDES 135
           +  +   Y  G  G +LVY VT   SF  ++  + + +D    ++V  +LVGNK+D+   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH-M 120

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +R V   +G++LA+ +G  F E+SAK N NVE+ F  +  EI
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  118 bits (297), Expect = 2e-33
 Identities = 59/178 (33%), Positives = 99/178 (55%), Gaps = 6/178 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD GVGK+ L ++   + F  ++  TI   ++ + + +DG+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---MRNIDQHAADNVNKILVGNKADMD 133
           +  +   + R   G +LVY +T  S+F  +  +   ++ +   +A +V  ++VGNK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK-QRLVESDSKAEP 190
              R V T +G  LA   G +F E SAKTN NVE+ F+++ R ++ QR      K  P
Sbjct: 120 YE-REVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGP 176

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  117 bits (294), Expect = 2e-33
 Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 5/163 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F   +F   +  TI  DF  + IE+D     L+I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN--IDQHAADNVNKILVGNKADMDE 134
           F ++   Y +   G ++VY + ++ +F +I+  MR+  +     + V  ILVGNK D+ E
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDL-E 119

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           S+R V +A+G+ LA+E+G  F ETSAK+   V ++F  I R++
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  117 bits (296), Expect = 3e-33
 Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 16/172 (9%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDT 71
           D  +K++++GD G GK+CLL+ ++  SF   ++ T+  +  + T+++ +GK I+L +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKA 130
           AGQE +  +    Y     IL+ Y V + +S +N+ + W   +  H       +LVG K 
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLKT 118

Query: 131 DMDESKRA-----------VPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           D+ + K +           V   +G+ +A   G + + E SAK   NV++VF
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  117 bits (296), Expect = 5e-33
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 9/192 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQ 74
           IK++++GD   GK+ L+ RF+ + F  S+  TIG+DF  R I L G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK---ILVGNKAD 131
           +    +   Y  GA  + LVYD+T+  SF N+ +W+  + +   ++  K   +LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE-P 190
           + E  R V   K    A E  ++    SAKT   V   F  IA E+   L    S+AE  
Sbjct: 121 L-EHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL---LGVKLSQAELE 176

Query: 191 QTIRISKPDPAN 202
           Q+ R+ K D + 
Sbjct: 177 QSQRVVKADVSR 188

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  115 bits (289), Expect = 1e-32
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 19  LLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++G  GVGKS LL                TT   D      ELD  ++KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 76  RF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
            F       +     RGA  ILLV D TD  S  + +  +  + +   + +  ILVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLI--LRRLRKEGIPIILVGNKI 116

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
           D+ E +      + +ELA   G+  FE SAKT   V+++F  +  
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  110 bits (277), Expect = 1e-30
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 1/165 (0%)

Query: 38  DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97
           D+F  ++ +TIGIDF  +T+ LD   ++LQ+WDTAGQERFR++  +Y R +   ++VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 98  TDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE 157
           T+  SF N   W+++I      +V   LVGNK D+ +  R V   +G + A EY   F E
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHE 121

Query: 158 TSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRISKPDPAN 202
           TSAK   N++ +F  IA ++      + + A    I+++    AN
Sbjct: 122 TSAKAGHNIKVLFKKIAAKLPNLDNSNSNDANVVDIQLTNNSNAN 166

Length = 176

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  110 bits (276), Expect = 1e-30
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R     F   ++ T+G++        +  +I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY      ++++DVT   ++ N+ NW R++     +N+  +L GNK D    
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVD---I 116

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
           K      K      +  ++++E SAK+N+N E+ F  +AR
Sbjct: 117 KDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  109 bits (274), Expect = 2e-30
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 6/164 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIEL--DGKRIKLQIWDTA 72
           +  ++GD  VGKS L+  F  D  +F  ++  T G D  ++T+ +      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKAD 131
           GQE F  +    +     + +VYDVT+E SFNN   W+  +  H+   +   +LVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
           +   +R V  A+ Q LA    +KF+ETSAK     E  F S+AR
Sbjct: 122 L-TDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  109 bits (274), Expect = 9e-30
 Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 4/162 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD GVGK+  + R     F   +I T+G++        +   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY      ++++DVT   ++ N+ NW R+I +   +N+  +LVGNK D+ + 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGNKVDVKD- 127

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
            R V  A+      +  +++++ SAK+N+N E+ F  +AR +
Sbjct: 128 -RQV-KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL 167

Length = 215

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  106 bits (266), Expect = 4e-29
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS + ++F   SF      TI   +K +   +D +   L I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQAE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y R   G ++ Y VTD  SF     +   I +    +++  +LVGNK D+ E 
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDL-EQ 121

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +R V T +G+ LA E+   FFETSA   F ++  F  + REI+++
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRK 166

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  105 bits (265), Expect = 6e-29
 Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           IK++++GD  VGKS LL R   +    T +      ++    IE DGK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVT--DESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           E +  I   YYR     L V+D+          +    + I  HA   V  ILVGNK  +
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNK--I 119

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
           D     + T      A   G      SA+T  N++  F
Sbjct: 120 DLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  105 bits (263), Expect = 1e-28
 Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 15/167 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+ FS D F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 120

Query: 134 ES---------KRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E          +  V   +G+ +A++ G   + E SAKT   V +VF
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  103 bits (258), Expect = 5e-28
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 5/161 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GDS VGKS L+ RF  D +    ++T  +       + +GK I +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RF+T+  +YY  A   +LV+DVT + ++ N+  W   + ++    +  I+V NK D+D S
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176
                T K    A+++ +  +  SA    NV ++F    + 
Sbjct: 120 V----TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  100 bits (250), Expect = 1e-26
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K +L+GD  VGK+ L++ ++ + + T ++ T   +F +  + +DGK ++LQ+ DTAGQ+
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQD 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDE 134
            F  +    Y      LL + V + SSF NI   W+  I +H       ILVG +AD+  
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRT 118

Query: 135 S-----------KRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                       ++ V  ++ + LA++ G  ++ E SA T  N+++VF
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (250), Expect = 3e-26
 Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++GD G GK+  + R     F   +  TIG++        +  +I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY      ++++DVT   ++ N+  W R++ +   +N+  +L GNK D+   
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN- 131

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
            R V  AK      +  ++++E SAK+N+N E+ F  +AR++        VES + A P+
Sbjct: 132 -RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189

Length = 219

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 95.7 bits (238), Expect = 7e-25
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 13/166 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+C+L+ ++ ++F T ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    YRGA   LL + +  ++S+ N+ + W+  + +H A  V  +LVG K D+ +
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPEL-RHYAPGVPIVLVGTKLDLRD 119

Query: 135 SKR-------AVP--TAKGQELADEYGIK-FFETSAKTNFNVEQVF 170
            K+       AVP  TA+G+EL  + G   + E S+KT  NV+ VF
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 93.7 bits (233), Expect = 3e-24
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           DY  ++++ G  GVGKS L+LRF   +F  S+I TI   ++ + I        LQI DT 
Sbjct: 1   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTT 57

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI---LVGNK 129
           G  +F  +           +LVY +T + S   ++     I +   +N+ KI   LVGNK
Sbjct: 58  GSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNK 117

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
            D +   R V +++G  LA  +   F ETSAKTN NV+++F
Sbjct: 118 CD-ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 94.4 bits (235), Expect = 3e-24
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 14/169 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+ +GK+ L++++ +  F   +I T+G++F  +TI + G  I   IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK----ILVGNK-- 129
            F  +     + A+ IL ++D+T +S+ N+I+ W R      A   NK    ILVG K  
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-----ARGFNKTAIPILVGTKYD 115

Query: 130 --ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF-FSIAR 175
             AD+   ++   T + ++ A          S   + NV+++F F +A+
Sbjct: 116 LFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAK 164

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 94.0 bits (234), Expect = 8e-24
 Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 6/167 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +++L+GDSGVGKS L   F+   +  S     G D   RT+ +DG+   L ++D   QE 
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKILVGNKADMD 133
              +  +  +     ++VY VTD SSF   + +R  +R   Q   +++  ILVGNK+D+ 
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA--EDIPIILVGNKSDLV 119

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            S R V   +G+  A  +  KF ETSA    NV+++F  I R+++ R
Sbjct: 120 RS-REVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLR 165

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 93.5 bits (232), Expect = 8e-24
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 21  IGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80
           +GD G GK+  + R     F   ++ T+G++        +   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 81  TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP 140
              YY      ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + K    
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRK---V 116

Query: 141 TAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQTIRIS 196
            AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+ +   
Sbjct: 117 KAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM-- 174

Query: 197 KPDPA 201
             DPA
Sbjct: 175 --DPA 177

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 91.0 bits (226), Expect = 4e-23
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++ ++F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   + +H   N   ILVG K D+ +
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 119

Query: 135 SKRA-----------VPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
            K             +   +G  +A E G +K+ E SA T   ++ VF
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 88.7 bits (220), Expect = 4e-22
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+ LL  F+   F   +  T+  +  +    +DGK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE- 134
           +  +    Y  A  IL+ + +    S  N+R  W+  + ++   NV  ILVG K D+ + 
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQE 120

Query: 135 --------SKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQVF 170
                   +   VP  + + +A   G K + E SA T   V+ VF
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 87.8 bits (217), Expect = 1e-21
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 15/175 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++ ++F   +I T+  ++  +T  +DG+ + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDE 134
            +  + T  Y      ++ + +   SS+ N+R+ W   +  H   NV  +LVG K D+  
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRN 121

Query: 135 SKRAV---------PTA--KGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
               +         P    +G  LA +   +K+ E SA     V++VF    R +
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 84.0 bits (208), Expect = 5e-21
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+++IGD G GKS LL +     F    +   G    + T+E+DG    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWMRNIDQHAADNVNKILVGNK 129
            +     + + A  ILLVYD+TD  S N    +  W+ N+ +     +  ILVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL-RKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 84.6 bits (209), Expect = 3e-20
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 43/231 (18%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD  VGK+ LL R+ +  F  + ++T+G  F ++          + IWDTAG+E
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLK----QWGPYNISIWDTAGRE 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  + + Y RGA  ++L YDV++  S   + +    +   A ++    +VGNK D+ E 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 136 KRAVPTAKG----------QELADEYGIKF----------------------FETSAKTN 163
                  K           +++  E    F                      FETSAKT 
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 164 FNVEQVFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
           +NV+++F  +   +   L+ +      +T           S     KS CC
Sbjct: 176 YNVDELFEYLFNLVLP-LILAQRAEANRTQGTVNLPNPKRS-----KSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 79.7 bits (197), Expect = 7e-19
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQ 74
            KL+L+G  GVGK+ L  +   + F     +T GI+    +    + K+I+L +WD  GQ
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134
           E +      +       LLV+D+      + +  W+R I      +   ILVG   D   
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVGTHIDESC 120

Query: 135 SKRAVPTAKGQELADEYG---IKFF-ETSAKTNFNVEQVFFSIARE 176
            +  +     ++  ++     I      S K    + ++  +IA+E
Sbjct: 121 DEDIL-----KKALNKKFPAIINDIHFVSCKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 78.1 bits (192), Expect = 4e-18
 Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K +++GD  VGK+CLL+ +++D+F   ++ T+  D    ++ + GK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V + +SF N++  W+  + ++A  NV  +L+G + D+  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIGTQIDLRD 118

Query: 133 ---------DESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQVF 170
                    D  ++ +   +GQ+LA E G   + E SA T   ++ VF
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 76.4 bits (188), Expect = 2e-17
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L+ +G +GVGK+ L+ RF  D+F      T+  +   +  E+ G ++ + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDES 135
           F  +     +      LVY V D  SF  ++     I +   D    I+V GNK D   +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDS-LA 118

Query: 136 KRAVPTAKGQELAD-EYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +R V  A      + ++   F E SAK N NV +VF  + ++  
Sbjct: 119 ERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQAN 162

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 75.7 bits (186), Expect = 3e-17
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++ + F + ++ T+  ++ + T+ + G+   L ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+ +
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 119

Query: 135 SK-----------RAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                        + +    G++LA +   +K+ E SA T   ++ VF
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 48/169 (28%), Positives = 92/169 (54%), Gaps = 16/169 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+GDS  GK+ LL  F+ DSF  +++ T+  ++   + E+D +RI+L +WDT+G  
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTA-SFEVDKQRIELSLWDTSGSP 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y  +  +L+ +D++   + +++ + W   + +    N   +LVG K+D+  
Sbjct: 61  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEV-REFCPNTPVLLVGCKSDLRT 119

Query: 135 ---------SKRAVPTA--KGQELADEYG-IKFFETSAKTN-FNVEQVF 170
                    +KR +P +  +G+ LA + G   + E SAKT+  +V  VF
Sbjct: 120 DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 72.6 bits (178), Expect = 4e-16
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD   GK+ LL  F+   F   +  T+  ++ I  I +DG  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDES 135
           F  + +  Y     I+L + V +  S  N+ + W+  I  H    V  +LV  K D+ E 
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHH-CPGVKLVLVALKCDLREP 119

Query: 136 KRAVPTAKGQELADEYGI---------KFFETSAKTNFNVEQVFFSIAR 175
            R         ++ E G+         ++ E SAK N  V + F   AR
Sbjct: 120 -RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 69.1 bits (170), Expect = 6e-15
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++L++G  G GK+ +L +       T+ I TIG  F + T+E   K +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDES 135
            R +   YY    G++ V D +D       +N +  +           +++ NK D+   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDL--- 112

Query: 136 KRAVPTAKGQELADEYGIK-----FFETSAKTNFNVEQVF 170
             A+  ++  EL     IK         SA T   +++  
Sbjct: 113 PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSF-----ITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++++LIGD GVGKS L++    + F  +        TI  D    T E    R+   I D
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV---TPE----RVPTTIVD 55

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNK 129
           T+ + + R    A  R A  I LVY V   S+   IR  W+  I +     V  ILVGNK
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR-LGVKVPIILVGNK 114

Query: 130 ADM-DESKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFF 171
           +D+ D S +A    +   + +E+       E SAKT  NV +VF+
Sbjct: 115 SDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+ LL  F+ D F  +++ T+  ++   + E+D +RI+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I Q    N   +LVG K+D+   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGCKSDLRTD 124

Query: 134 -------ESKRAVPTA--KGQELADEYG-IKFFETSAKTNFNVEQVFFSIA 174
                   + R  P +  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 65.4 bits (159), Expect = 3e-13
 Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 45/194 (23%)

Query: 15  LIKLLLIGDSGVGKSCLLL------RFSDDSFTTSFITTI-GIDFKIRTIEL-------- 59
            IK +++GD+ VGK+ L+         +      + + T+  ID      E+        
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 60  DGKRIKLQIWDTAG----QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNID 114
           DG  + L++WDT G      RF     AY R  + +LL + +   +S  N++  W   I 
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIR 115

Query: 115 QHAADNVNKILVGNKADM-----DESKRA-------------VPTAKGQELADEYGIKFF 156
                 V  ILVG K D+     DE  RA             +P   G+ +A E GI ++
Sbjct: 116 HFCPR-VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 157 ETSAKTNFNVEQVF 170
           ETS  T F V+ VF
Sbjct: 175 ETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 65.4 bits (159), Expect = 4e-13
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 22/218 (10%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD+  GK+ LL  F+ D++  S++ T+  ++   + E+D  RI+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTA-SFEIDKHRIELNMWDTSGSSY 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD--- 133
           +  +    Y  +  +L+ +D++   + +++    +   Q    N   +LVG K DM    
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDL 121

Query: 134 ------ESKRAVPTA--KGQELADEYG-IKFFETSAKTNFN-VEQVFF-----SIAREIK 178
                   +R +P    +G  LA + G + + E S++ + N V  VF      S+ RE  
Sbjct: 122 STLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHP 181

Query: 179 QRLVESDSKAEPQTI--RISKPDPANGSAAAPEKSACC 214
             L  S S+   + I  +  +P   N      +++  C
Sbjct: 182 S-LKRSTSRRGLKRISQQPLRPVTENTPEIRKDRAKSC 218

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 22/173 (12%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +++++G S VGK+ ++ RF    F   +  TI  DF  +   + G+  +L I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 77  FR-----TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-------- 123
           F      +I T    G +  +LV+ + +  SF  +      I +  +   NK        
Sbjct: 61  FPAMRRLSILT----GDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP 115

Query: 124 -ILVGNKADMDESKRAVPTAKGQEL-ADEYGIKFFETSAKTNFNVEQVFFSIA 174
            ++ GNKAD D   R V   + ++L   +    +FE SAK N N++++F ++ 
Sbjct: 116 MVICGNKADRDFP-REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 61.5 bits (149), Expect = 6e-12
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I TIG  F + T+    K I   +WD  GQ+
Sbjct: 14  MRILMVGLDAAGKTTILYKLKLGESVTT-IPTIG--FNVETVTY--KNISFTVWDVGGQD 68

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDE 134
           + R +   YY    G++ V D  D    +  R    R +++    +   ++  NK D+ +
Sbjct: 69  KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128

Query: 135 SKRA 138
           + +A
Sbjct: 129 AMKA 132

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 7/118 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++LL+G    GKS LL +       T+ I T+G  F +  ++L+   + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEKH-LSLTVWDVGGQEK 56

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAADNVNKILVGNKADM 132
            RT+   Y     G++ V D +DE+  +  +  +++I  ++H    V  +L+ NK D+
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIK-GVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 8/121 (6%)

Query: 17  KLLLIGDSGVGKSCLLLRFS-DDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           K++++G    GK+ +L +F   +   TS   TIG + +    E+  K I+  +WD  GQE
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGEVVHTS--PTIGSNVE----EIVYKNIRFLMWDIGGQE 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
             R+    YY     ++LV D TD       +  +  +  H       +LV  NK D+  
Sbjct: 71  SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130

Query: 135 S 135
           +
Sbjct: 131 A 131

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 19/159 (11%)

Query: 20  LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
           L+G    GK+ L+   +   F+   I T+G  F +R +      IK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 80  ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN-IDQHAADNVNKILVGNKADMDESKRA 138
           +   Y RG   I+ V D  D       +N + + +++ + + +  +++GNK D+      
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLP----- 114

Query: 139 VPTAKGQELADEYGIK--------FFETSAKTNFNVEQV 169
                  EL ++  +K         +  SAK   N++ V
Sbjct: 115 -GALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDIV 152

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 43/197 (21%), Positives = 92/197 (46%), Gaps = 25/197 (12%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD   GK+ +L   + D +  +++ T+  ++    +E + +R++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 73

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADM--- 132
           +  +    Y  +  +LL +D++    F++ ++ W   I  +   +   +L+G K D+   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-STRILLIGCKTDLRTD 132

Query: 133 --------DESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQVFFSIAREIKQRLVE 183
                   ++ +  +   +G  +A + G + + E SA   F  E+   SI R      + 
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSA---FTSEKSIHSIFRTASLLCI- 188

Query: 184 SDSKAEPQTIRISKPDP 200
             +K  P    ++K  P
Sbjct: 189 --NKLSP----LAKKSP 199

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I TIG  F + T+    K +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDE 134
             R +   Y+     ++ V D  D       +  +  +       +   +++ NK D+  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Query: 135 SKRAVPTAKGQELADEYGIK 154
              A+  A+ +EL   + +K
Sbjct: 130 ---AMSEAEIRELLGLHELK 146

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 29/151 (19%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-----DGKRIKLQIWD 70
           +K+L++GDSGVGKS L+     +    +   T+G    +R         + K   +++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 71  TAGQ----ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---------------MR 111
             G     E  ++    +Y    GI+ V+D+T++ S  N+  W               + 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 112 NID----QHAADNVNKILVGNKADM-DESKR 137
           N D    Q A + V  +++G K D   E+KR
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKR 151

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I TIG  F + T+E   K +K  +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNLKFTMWDVGGQD 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM 132
           + R +   YY+   G++ V D  D     + R    R + +    +   ++  NK D+
Sbjct: 73  KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 16/141 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFS-DDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           +++L++G    GK+ +L +     S TT  I T+G  F + T+    K +K  +WD  GQ
Sbjct: 10  MRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVG--FNVETVTY--KNVKFNVWDVGGQ 63

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMD 133
           ++ R +   YY G  G++ V D  D    +  R  + R I+     +   ++  NK D  
Sbjct: 64  DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQD-- 121

Query: 134 ESKRAVPTA-KGQELADEYGI 153
                +P A K  E+ ++ G+
Sbjct: 122 -----LPDAMKPHEIQEKLGL 137

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 25/142 (17%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIR------------TIELDGKR 63
           +++L++GDSGVGKS L+      S       TIG    ++            +I+ D +R
Sbjct: 22  VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81

Query: 64  -IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN-- 120
              +++WD +G ER++   + +Y    G++ V+D++   +  +++ W   +      +  
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 121 ----------VNKILVGNKADM 132
                     V  I++GNKAD+
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM 132
           + R +   Y++   G++ V D  D       R    R +++    +   ++  NK D+
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 12/139 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDE 134
           + R +   Y++   G++ V D  D       R+ + R +++    +   ++  NK D+  
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132

Query: 135 SKRAVPTAKGQELADEYGI 153
           +  A       E+ D+ G+
Sbjct: 133 AMNA------AEITDKLGL 145

Length = 181

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 18  LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQER 76
           ++++G    GK+ +L R   + F  + + T G +  KI+    + K +    WD  GQE+
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEK 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN--VNKILVGNKADMDE 134
            R +  +Y R   GI+ V D  D       +  +  I +  ++N  V  +++ NK D+  
Sbjct: 65  LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITK-FSENQGVPVLVLANKQDLPN 123

Query: 135 S 135
           +
Sbjct: 124 A 124

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 46  TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN 105
            T+G++  I TIE+     +L  WD  GQE  R++   YY  + G++ V D TD   FN 
Sbjct: 37  PTVGLN--IGTIEVGK--ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNE 92

Query: 106 IRNWM-RNIDQHAADNVNKILVGNKADM 132
            ++   + I+  A + V  +++ NK D+
Sbjct: 93  SKSAFEKVINNEALEGVPLLVLANKQDL 120

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++ +G    GK+ LL    DD      + T+       + EL    +K   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPT----SEELTIGNVKFTTFDLGGHEQ 75

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAADNVNKILVGNKADMDE 134
            R +   Y+    GI+ + D  D   F   +  + ++  D+  A NV  +++GNK D   
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELA-NVPILILGNKIDK-- 132

Query: 135 SKRAVPTAKGQELADEYGIKFFET 158
              AV     +EL +  G+    T
Sbjct: 133 -PGAVSE---EELREALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
          +++ +G  G GK+ +L +   D F    I TIG  F + T+E   K +K  IWD  G+ +
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIG--FNVETVEY--KNLKFTIWDVGGKHK 55

Query: 77 FRTITTAYYRGAMGILLVYD 96
           R +   YY     ++ V D
Sbjct: 56 LRPLWKHYYLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KL ++G+   GKS L+ R+   S+     +  G  FK + + +DG+   L I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYV-QLESPEGGRFK-KEVLVDGQSHLLLIRDEGGAP 58

Query: 76  --RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADM 132
             +F     A       ++ V+ + DE+SF  +      +  +     +  ILVG +  +
Sbjct: 59  DAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAI 111

Query: 133 DESK-RAVPTAKGQEL-ADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
             S  R +  A+ ++L AD     ++ET A    NVE+VF   A++I
Sbjct: 112 SASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 15/96 (15%)

Query: 16  IKLLLIGDSGVGKSCLL------------LRFSDDSFTTSFITTIGIDFKIRTIELDGKR 63
            K+++IG  G GK+  +               S  S      TT+ +DF   +IELD   
Sbjct: 11  TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDT 68

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
             + ++ T GQERF+ +     RGA+G +++ D + 
Sbjct: 69  -GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR 103

Length = 187

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 21/171 (12%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD----- 70
           +++ ++G  GVGK+ ++ +F    F   +I T         + L G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 71  ----TAGQE----RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI-DQHAADNV 121
               TAGQE    RFR +     R +   +LVYD+    SF+ ++   + I +   A N 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 122 NK--ILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
               ++VGNK D    + A        +   +   + E SAK N+++  +F
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++LL+G    GK+ +L + + +  +    T     F I+ ++ DG   KL +WD  GQ 
Sbjct: 16  VRILLLGLDNAGKTTILKQLASEDISHITPTQ---GFNIKNVQADG--FKLNVWDIGGQR 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDE 134
           + R     Y+     ++ V D  D   F      +  + ++     V  ++  NK D+  
Sbjct: 71  KIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Query: 135 SKRAVPTAKGQELAD 149
           +  A   A+   L D
Sbjct: 131 AAPAEEVAEALNLHD 145

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++L++G  G GK+ +L R       T+ I TIG  F + T+    K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQTS 55

Query: 77  FRTITTAYYRGAMGILLVYDVTDES 101
            R     YY     I+ V D TD  
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +F+ +   ++   T+G  F I+T+E +G   KL IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGED-ISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQK 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI 113
             R+    Y+     ++ V D +D +   + +  ++ +
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKL 107

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 21  IGDSGVGKSCLLLRFSDDSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
           +G  G GKS LL  F   SF+ +  + TI   + + T+E+ G+  K  I    G++    
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQE-KYLILREVGEDEEAI 68

Query: 80  ITTAYYRGAMGIL-LVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMDESK 136
           +       A  +  LVYD +D +SF+          ++     +  + V  KAD+DE +
Sbjct: 69  LLNDAELAACDVACLVYDSSDPNSFSYC---AEVYKKYFMLGEIPCLFVAAKADLDEQQ 124

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 18/166 (10%)

Query: 20  LIGDSGVGKSCLLLR-FSDDSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAG--- 73
           + G   VGKS LL      +    S I  TT       +  EL      + + DT G   
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDP--VRKEWELLPLG-PVVLIDTPGLDE 58

Query: 74  ---QERFRTITT-AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
                R R          A  +LLV D                +          +LV NK
Sbjct: 59  EGGLGRERVEEARQVADRADLVLLVVDSD-----LTPVEEEAKLGLLRERGKPVLLVLNK 113

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
            D+          + ++L     +     SA     ++++   IA 
Sbjct: 114 IDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAE 159

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 124 ILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA---REIKQR 180
           I+V NK D+ E++  +     +E  ++ G K F  SA T   ++++ +++A    E  + 
Sbjct: 278 IVVANKMDLPEAEENL-----EEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETPEF 332

Query: 181 LVESDSKAEPQTIRISKPDPA 201
            +E +   E    +  + +  
Sbjct: 333 PLEEEEVEEEVYYKFEEEEKD 353

Length = 424

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 18  LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +L++G  G GK+ LL   S +    S + T G  F    I      ++L   +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQDAIMELL--EIGGSQNL 57

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137
           R     Y  G+ G++ V D  D       R  +  + QH  D +  +++ NK D+  + R
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPD-LPLVVLANKQDL-PAAR 115

Query: 138 AVPTAKG----QELADEYGIKFFETSAKTN 163
           +V         + +A         TS   +
Sbjct: 116 SVQEIHKELELEPIARGRRWILQGTSLDDD 145

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 50/179 (27%)

Query: 18  LLLIGDSGVGKSCLLLRFSDDS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           L++ G   VGKS L+ + +          FTT  +  +G        +    R   Q+ D
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLF-VGH------FDYKYLRW--QVID 53

Query: 71  TAG------QER----FRTITT-AYYRGAMGILLVYDVTDESS---------FNNIRNWM 110
           T G      +ER     + IT  A+ R A  +L   D ++            F  I+   
Sbjct: 54  TPGILDRPLEERNTIEMQAITALAHLRAA--VLFFIDPSETCGYSIEEQLSLFKEIKPLF 111

Query: 111 RNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169
                    N   I+V NK D+   +      K  E   E   +  + S  T   V+++
Sbjct: 112 ---------NKPVIVVLNKIDLLTEEDLSEIEKELEKEGE---EVIKISTLTEEGVDEL 158

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 18  LLLIGDSGVGKSCLLLRFSDDSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L++G    GK+ ++ +    +  +  I  T+G  F + + +     +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKIL----VGNKADM 132
           +R +   YY+   GI+ V D +D       ++ +  +  H  D  ++ +      NK D+
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNH-PDIKHRRIPILFYANKMDL 116

Query: 133 DESKRAV 139
            ++  AV
Sbjct: 117 PDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 18  LLLIGDSGVGKSCLLLRFSD--DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           LL +G    GK+ L+              +       +     LD  + ++ I+D  G  
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLR-----LD--KYEVCIFDLGGGA 54

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
            FR I   YY  A G++ V D +D+     ++  +R + QH   +   ILV  NK D   
Sbjct: 55  NFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114

Query: 135 S 135
           +
Sbjct: 115 A 115

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 37.0 bits (87), Expect = 0.004
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 123 KILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +I+V NK D+ + +        +EL +  G   F  SA T   ++++ +++A  ++
Sbjct: 276 RIVVLNKIDLLDEEEL--EELLKELKEALGKPVFPISALTGEGLDELLYALAELLE 329

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
PLN03118	211	Rab family protein; Provisional	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
PTZ00099	176	rab6; Provisional	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
PLN00023	334	GTP-binding protein; Provisional	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
PRK15494	339	era GTPase Era; Provisional	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
PRK11058	426	GTPase HflX; Provisional	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
KOG1673	205	consensus Ras GTPases [General function prediction	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
COG1159	298	Era GTPase [General function prediction only]	99.86
PRK00089	292	era GTPase Era; Reviewed	99.86
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.85
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
PRK12317	425	elongation factor 1-alpha; Reviewed	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.83
COG2262	411	HflX GTPases [General function prediction only]	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
PRK10218	607	GTP-binding protein; Provisional	99.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.8
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.79
COG1084	346	Predicted GTPase [General function prediction only	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
PRK12736	394	elongation factor Tu; Reviewed	99.76
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.76
COG1163	365	DRG Predicted GTPase [General function prediction	99.76
PRK12735	396	elongation factor Tu; Reviewed	99.75
COG0536	369	Obg Predicted GTPase [General function prediction	99.74
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.74
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.74
CHL00071	409	tufA elongation factor Tu	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.73
PLN00043	447	elongation factor 1-alpha; Provisional	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.73
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.73
PLN03126	478	Elongation factor Tu; Provisional	99.72
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.72
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.72
PTZ00141	446	elongation factor 1- alpha; Provisional	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.71
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.71
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.71
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.71
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.7
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.69
PLN03127	447	Elongation factor Tu; Provisional	99.68
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.68
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.67
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.66
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.66
KOG1145	683	consensus Mitochondrial translation initiation fac	99.65
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.64
COG3596	296	Predicted GTPase [General function prediction only	99.64
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.63
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.62
PRK12739	691	elongation factor G; Reviewed	99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.6
PRK00007	693	elongation factor G; Reviewed	99.58
PRK09866	741	hypothetical protein; Provisional	99.58
KOG0090	238	consensus Signal recognition particle receptor, be	99.56
PRK12740	668	elongation factor G; Reviewed	99.56
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.56
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.54
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.53
PTZ00258	390	GTP-binding protein; Provisional	99.53
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.53
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.52
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.51
PRK14845	1049	translation initiation factor IF-2; Provisional	99.5
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.5
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.47
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.47
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.47
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.46
PRK07560	731	elongation factor EF-2; Reviewed	99.46
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.45
PRK09601	364	GTP-binding protein YchF; Reviewed	99.45
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.43
PRK13768	253	GTPase; Provisional	99.41
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.41
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.41
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.41
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.39
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.38
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.38
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.37
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.37
PTZ00416	836	elongation factor 2; Provisional	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.37
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.37
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.36
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.36
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.36
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.35
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.35
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.35
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.35
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.34
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.33
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.31
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.29
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.28
KOG0410	410	consensus Predicted GTP binding protein [General f	99.27
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.22
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.2
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.18
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.14
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.14
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.12
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.06
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.05
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.04
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.03
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.0
PRK12289	352	GTPase RsgA; Reviewed	99.0
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.0
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.99
PRK12288	347	GTPase RsgA; Reviewed	98.99
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.97
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.96
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.95
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.95
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.93
PRK00098	298	GTPase RsgA; Reviewed	98.92
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.9
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.88
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.82
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.81
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.8
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.79
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.76
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.75
KOG2486	320	consensus Predicted GTPase [General function predi	98.74
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.69
KOG1143	591	consensus Predicted translation elongation factor	98.69
KOG0460	449	consensus Mitochondrial translation elongation fac	98.69
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.68
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.68
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.68
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.68
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.64
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.62
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.62
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.58
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.57
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.57
COG1161	322	Predicted GTPases [General function prediction onl	98.54
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.52
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.51
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.49
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.49
COG3523	1188	IcmF Type VI protein secretion system component Va	98.48
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.47
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.45
PRK12288	347	GTPase RsgA; Reviewed	98.41
cd03112	158	CobW_like The function of this protein family is u	98.41
PRK01889	356	GTPase RsgA; Reviewed	98.4
PRK10416	318	signal recognition particle-docking protein FtsY;	98.39
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.37
PRK13796	365	GTPase YqeH; Provisional	98.37
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.37
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.36
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.36
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.36
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.34
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.32
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.32
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.32
PRK13796	365	GTPase YqeH; Provisional	98.31
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.31
PRK14974	336	cell division protein FtsY; Provisional	98.31
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.24
COG1162	301	Predicted GTPases [General function prediction onl	98.23
PRK12289	352	GTPase RsgA; Reviewed	98.23
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.19
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.16
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.15
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.15
COG1162	301	Predicted GTPases [General function prediction onl	98.15
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.13
PRK13695	174	putative NTPase; Provisional	98.13
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.12
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.1
PRK00098	298	GTPase RsgA; Reviewed	98.1
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.08
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.05
cd03110	179	Fer4_NifH_child This protein family's function is	98.01
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.0
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.98
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.96
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.95
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.95
COG0523	323	Putative GTPases (G3E family) [General function pr	97.93
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.9
cd03114	148	ArgK-like The function of this protein family is u	97.9
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.89
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.88
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.83
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.83
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.8
TIGR00959	428	ffh signal recognition particle protein. This mode	97.78
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.76
KOG2484	435	consensus GTPase [General function prediction only	97.75
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.74
PRK10867	433	signal recognition particle protein; Provisional	97.71
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.68
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.63
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.63
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.61
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.61
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.58
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.54
KOG1533	290	consensus Predicted GTPase [General function predi	97.49
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.48
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.46
PRK08118	167	topology modulation protein; Reviewed	97.45
PRK07261	171	topology modulation protein; Provisional	97.43
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.43
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.42
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.41
cd03111	106	CpaE_like This protein family consists of proteins	97.4
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.4
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.36
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.32
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.31
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.29
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.23
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.2
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.2
PRK06217	183	hypothetical protein; Validated	97.19
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.19
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.17
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.14
PRK03839	180	putative kinase; Provisional	97.12
PRK01889	356	GTPase RsgA; Reviewed	97.12
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.11
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.09
PRK14738	206	gmk guanylate kinase; Provisional	97.07
cd02036	179	MinD Bacterial cell division requires the formatio	97.05
PF00004	132	AAA: ATPase family associated with various cellula	97.05
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.04
smart00382	148	AAA ATPases associated with a variety of cellular	97.04
PRK14530	215	adenylate kinase; Provisional	97.03
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.03
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.01
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.01
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.0
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	96.99
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.98
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.98
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.97
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.97
PRK08233	182	hypothetical protein; Provisional	96.96
PRK10646	153	ADP-binding protein; Provisional	96.94
PRK14532	188	adenylate kinase; Provisional	96.94
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.92
PRK13949	169	shikimate kinase; Provisional	96.92
PRK14737	186	gmk guanylate kinase; Provisional	96.91
PRK00625	173	shikimate kinase; Provisional	96.91
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.9
PTZ00088	229	adenylate kinase 1; Provisional	96.9
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.89
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.88
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.88
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.87
PRK02496	184	adk adenylate kinase; Provisional	96.86
PRK14531	183	adenylate kinase; Provisional	96.85
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.85
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.85
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.82
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.81
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.81
COG0802	149	Predicted ATPase or kinase [General function predi	96.81
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.79
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.78
PRK05480	209	uridine/cytidine kinase; Provisional	96.77
PRK06547	172	hypothetical protein; Provisional	96.77
PRK04195	482	replication factor C large subunit; Provisional	96.76
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.76
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.76
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.76
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.75
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.75
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.74

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-43  Score=242.64  Aligned_cols=179  Identities=63%  Similarity=1.055  Sum_probs=169.6

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ..+.+|.+||+|+|..|+|||.|+.+|.+..+.+.+..|.+.++....+.++++.++++||||+|+++++.+...++|++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEecCCCCCHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVE  167 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  167 (216)
                      +++|+|||+++.++|..+..|+.++..+...++|.++|+||+|+.+ ...++.++++.|+..++++ ++++||+++.|+.
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            9999999999999999999999999999999999999999999965 7789999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccC
Q 027985          168 QVFFSIAREIKQRLVESDSKA  188 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~~~~~~~  188 (216)
                      ++|..|...+.++........
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCC
Confidence            999999999987776655443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-40  Score=230.33  Aligned_cols=172  Identities=44%  Similarity=0.749  Sum_probs=161.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+++|..++|||||+-++..+.|.+...+|.+--+....+..++..++|.||||+|+++|.++.+.++|+++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35699999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||+++.++|..++.|+..+.....+++-+.+|+||+|+.+ .+++..++++.+++..+..+|++||+++.|++++|..
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            999999999999999999999998887788888999999976 7789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 027985          173 IAREIKQRLVESD  185 (216)
Q Consensus       173 l~~~~~~~~~~~~  185 (216)
                      |.+.+.....+..
T Consensus       162 Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  162 IAEKLPCSDPQER  174 (200)
T ss_pred             HHHhccCcccccc
Confidence            9999987665554

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-40  Score=228.99  Aligned_cols=171  Identities=40%  Similarity=0.685  Sum_probs=159.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      -...||+++|..++||||||.+|+.+.|...|.+|.+.++...++.+.+..+.+++|||+|+++++.+.+.++|++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      +|||+++..+|++...|++.+...+.. ++.+++|+||.||.+ .+++..++.+..++++++.|.++||+.|+||+++|.
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            999999999999999999999888765 477888999999976 688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027985          172 SIAREIKQRLVES  184 (216)
Q Consensus       172 ~l~~~~~~~~~~~  184 (216)
                      .|...+......+
T Consensus       179 rIaa~l~~~~~~~  191 (221)
T KOG0094|consen  179 RIAAALPGMEVLE  191 (221)
T ss_pred             HHHHhccCccccc
Confidence            9888888765543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.2e-39  Score=217.73  Aligned_cols=203  Identities=43%  Similarity=0.737  Sum_probs=172.2

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .+..+.+||+++|.+|+|||+|+.+|....|.+....+.+.++....+.+++..+++.||||+|+++++.+.+.+++.+.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ++|+|||++..++|..+..|+.++..+. .+++..++|+||+|. +..+.++.++...|++++++.++++||++.+|++.
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-ESERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-hhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            9999999999999999999999998776 445667899999996 34688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 027985          169 VFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS  216 (216)
Q Consensus       169 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  216 (216)
                      .|+.++..+.+-..--+......+.++.+.   +.....-.+++||.|
T Consensus       165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~---p~~~~~~~~g~~Cs~  209 (209)
T KOG0080|consen  165 CFEELVEKIIETPSLWEEGNSSAGLDIASD---PDGEASAHQGGCCSC  209 (209)
T ss_pred             HHHHHHHHHhcCcchhhccCCccccccccC---CCcccccccCCccCC
Confidence            999999988754332222222233333321   223333445678876

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-38  Score=224.86  Aligned_cols=173  Identities=78%  Similarity=1.261  Sum_probs=165.4

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...++.+||+++|.+++|||+|+.+|....+...+..+.++++...++..++..+.+++|||+|++++..+...+++.++
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++++|||+++..+++++..|+..+..+....+|.++|+||+|+.+ .+.+..+..+.++..+|+.++++||++|.||++.
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEEA  165 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence            999999999999999999999999999988999999999999965 8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027985          170 FFSIAREIKQRLVE  183 (216)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (216)
                      |..|...+.++...
T Consensus       166 F~~La~~i~~k~~~  179 (207)
T KOG0078|consen  166 FLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHhhcch
Confidence            99999999874443

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-37  Score=212.72  Aligned_cols=172  Identities=51%  Similarity=0.924  Sum_probs=162.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      +.+.+|++++|+.|+|||.|+.+|+...|.+.++.|.+.++....++++++.++++||||+|++.+.+....+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |+|||++..++|..+..|+..+.++..++..+++++||+|+.. .+.++.++.+.|+++++..++++||++++|+.|.|.
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            9999999999999999999999999877889999999999954 679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027985          172 SIAREIKQRLVES  184 (216)
Q Consensus       172 ~l~~~~~~~~~~~  184 (216)
                      .....+++....-
T Consensus       162 nta~~Iy~~~q~g  174 (216)
T KOG0098|consen  162 NTAKEIYRKIQDG  174 (216)
T ss_pred             HHHHHHHHHHHhc
Confidence            9888888765553

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-36  Score=222.82  Aligned_cols=164  Identities=46%  Similarity=0.931  Sum_probs=149.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +.|+++|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999998888899888888888999998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+ .+++..++++.+++.. ++.++++||++|.||+++|++|.
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988777666799999999999954 5677888888888875 68999999999999999999999


Q ss_pred             HHHHHH
Q 027985          175 REIKQR  180 (216)
Q Consensus       175 ~~~~~~  180 (216)
                      +.+...
T Consensus       160 ~~~~~~  165 (202)
T cd04120         160 DDILKK  165 (202)
T ss_pred             HHHHHh
Confidence            988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.1e-36  Score=224.05  Aligned_cols=173  Identities=35%  Similarity=0.679  Sum_probs=151.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.|||++|++.+..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888998888887788887 7778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQV  169 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l  169 (216)
                      ||++++++++.+..|+..+....    ...+|+++|+||+|+.+ ...+..++++.+++..+ ..++++||++|+|++++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999999988876542    24689999999999954 45677888999999988 68999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCC
Q 027985          170 FFSIAREIKQRLVESDSKAE  189 (216)
Q Consensus       170 ~~~l~~~~~~~~~~~~~~~~  189 (216)
                      |++|.+.+.+.........+
T Consensus       160 f~~l~~~l~~~~~~~~~~~~  179 (201)
T cd04107         160 MRFLVKNILANDKNLQQAET  179 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcC
Confidence            99999998766554443333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.9e-38  Score=208.03  Aligned_cols=184  Identities=55%  Similarity=0.929  Sum_probs=166.6

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ++.++-++.+|+|.+|+|||+|+.+|....|..+|..+.+.++...++.++|..++++|||++|++.++.+...+++..+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++++|||+++.++|.++++|++.+...+. .+|-++|+||.|.++ .+.+..++++.|+...++.+|++|+++.+|+...
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~m  160 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAM  160 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHH
Confidence            99999999999999999999999988765 789999999999865 7788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-hhhcccCCCccccc
Q 027985          170 FFSIAREIKQRL-VESDSKAEPQTIRI  195 (216)
Q Consensus       170 ~~~l~~~~~~~~-~~~~~~~~~~~~~~  195 (216)
                      |.-|.+.+.+.. +++...-+....++
T Consensus       161 F~cit~qvl~~k~r~~~~~~r~~~~~l  187 (198)
T KOG0079|consen  161 FHCITKQVLQAKLRESVEQQRADAVSL  187 (198)
T ss_pred             HHHHHHHHHHHHHhhcHHHHhhcceEe
Confidence            999999888776 44444444444444

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-36  Score=213.63  Aligned_cols=177  Identities=49%  Similarity=0.852  Sum_probs=167.7

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ..+.++.|||+++|.+++|||-|+.+|....|.....+|.+.++....+.++++.++.+||||+|+++|+.+...+++.+
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      .++++|||++...+|+++.+|+.+++.+...++++++|+||+||.+ .+.+..++++.+++..+..++++||.++.|+.+
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~  166 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVEK  166 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence            9999999999999999999999999999988999999999999966 788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 027985          169 VFFSIAREIKQRLVESDS  186 (216)
Q Consensus       169 l~~~l~~~~~~~~~~~~~  186 (216)
                      .|+.++..+.....++.-
T Consensus       167 aF~~~l~~I~~~vs~k~~  184 (222)
T KOG0087|consen  167 AFERVLTEIYKIVSKKQL  184 (222)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999988888877666543

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=8.4e-37  Score=209.88  Aligned_cols=173  Identities=39%  Similarity=0.697  Sum_probs=160.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....+||+++|.+|+|||+|++++.+..|...+..+.+-++..+.+.+++..+.++||||+|++++.++-..++|.+|.
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHhC-CcEEEEecCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDES-KRAVPTAKGQELADEYG-IKFFETSAKTNF  164 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (216)
                      +++|||++++++++.+..|..++..+..    ...|+||++||+|+.+. .++++...++.+++..+ ++||++||++..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999987654    46899999999999663 48899999999999887 799999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 027985          165 NVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~~  183 (216)
                      |+++.|+.+...+......
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999998876654

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.3e-35  Score=220.18  Aligned_cols=172  Identities=49%  Similarity=0.879  Sum_probs=155.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            45688999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||.+++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|.|++++|
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf  166 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF  166 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887666799999999999854 45667788888888889999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027985          171 FSIAREIKQRLVE  183 (216)
Q Consensus       171 ~~l~~~~~~~~~~  183 (216)
                      ++|...+.+...+
T Consensus       167 ~~l~~~i~~~~~~  179 (216)
T PLN03110        167 QTILLEIYHIISK  179 (216)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998876443

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=8.6e-36  Score=216.13  Aligned_cols=166  Identities=49%  Similarity=0.830  Sum_probs=151.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|..|+|||||+.+|....+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45779999999999999999999999888877778888888778888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |+|||++++.+++.+..|+..+.... .+.|++||+||.|+.+ ...+..++++.+++..++.+++|||++|.||+++|+
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999997765 4799999999999954 456788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          172 SIAREIKQ  179 (216)
Q Consensus       172 ~l~~~~~~  179 (216)
                      +|.+.+..
T Consensus       161 ~l~~~i~~  168 (189)
T cd04121         161 ELARIVLM  168 (189)
T ss_pred             HHHHHHHH
Confidence            99987753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.3e-35  Score=217.86  Aligned_cols=197  Identities=52%  Similarity=0.890  Sum_probs=162.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            45689999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ++|||++++++++.+..|+..+.... ...|++||+||+|+.+ ...+..+++..+++..++.++++||++|.||+++|+
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            99999999999999999999887654 4689999999999864 345667788888888889999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCC
Q 027985          172 SIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC  214 (216)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  214 (216)
                      +|.+.+.....+...+...    .+.......+...++++.||
T Consensus       161 ~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         161 CITELVLRAKKDNLAKQQQ----QQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHHhhhccCccccc----CCccccCccchhccccccCC
Confidence            9999997665444322222    22223333444445556676

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.7e-35  Score=218.80  Aligned_cols=188  Identities=30%  Similarity=0.547  Sum_probs=152.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+++|||||+++|....+.. ..++.+.++....+    ..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 46666555443332    3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCCCCCHHHHHHHHHHhC-----
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE------------------SKRAVPTAKGQELADEYG-----  152 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------------~~~~~~~~~~~~~~~~~~-----  152 (216)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+                  ..+.+..++++.+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999998888766556789999999999964                  246788899999998876     


Q ss_pred             ---------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCC
Q 027985          153 ---------IKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC  214 (216)
Q Consensus       153 ---------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  214 (216)
                               +.|+++||++|+||+++|..+++.+.....+........      .......+++.+|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT------QGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh------hccccCCCcccCCCCCC
Confidence                     679999999999999999999998887666654322211      22223344677888888

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=8e-35  Score=215.14  Aligned_cols=170  Identities=45%  Similarity=0.805  Sum_probs=149.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.|||++|++.+..++..+++.+|++|
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            3589999999999999999999999988888888888887777776 456689999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      +|||++++++++.+..|+..+..... ...|+++|+||.|+.+ ...+..++...+++..++.++++||++|+|++++|+
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~  159 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFE  159 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998876543 3577899999999865 456778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027985          172 SIAREIKQRLVES  184 (216)
Q Consensus       172 ~l~~~~~~~~~~~  184 (216)
                      +|.+.+.++....
T Consensus       160 ~l~~~~~~~~~~~  172 (211)
T cd04111         160 LLTQEIYERIKRG  172 (211)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999887775433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-35  Score=196.70  Aligned_cols=178  Identities=54%  Similarity=0.954  Sum_probs=166.7

Q ss_pred             ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      ...+..++.+|++|+|...+|||+|+.++.+..+...+..+.++++..+++.-..+.++++||||.|++.++.+...++|
T Consensus        13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR   92 (193)
T KOG0093|consen   13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR   92 (193)
T ss_pred             cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence            34457889999999999999999999999999999999999999999999888888899999999999999999999999


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                      +++++|++||.++.+++..++.|...+..+...+.|+|+|+||+|+ ++++.++.+..+.+++++|..+|++||+.+.|+
T Consensus        93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm-d~eRvis~e~g~~l~~~LGfefFEtSaK~NinV  171 (193)
T KOG0093|consen   93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM-DSERVISHERGRQLADQLGFEFFETSAKENINV  171 (193)
T ss_pred             ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC-ccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence            9999999999999999999999999999999899999999999999 447789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q 027985          167 EQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       167 ~~l~~~l~~~~~~~~~~~~  185 (216)
                      +++|+.+...+.....++.
T Consensus       172 k~~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  172 KQVFERLVDIICDKMSESL  190 (193)
T ss_pred             HHHHHHHHHHHHHHhhhhh
Confidence            9999999999987766654

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.8e-36  Score=201.25  Aligned_cols=177  Identities=32%  Similarity=0.672  Sum_probs=160.3

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ...+.+.|||+++|..-+|||+|+-+++...|.-....+..-.+....+.+.+...++.||||+|++.|..+-+-+++..
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            34677889999999999999999999999999877666665566677778888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      +++++|||++|..+|+.+++|..++.......+.++||+||+|+. .++.+..+++..+++..|..++++||+++.||.+
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE-eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e  165 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE-EERQVTRQEAEAYAESVGALYMETSAKDNVGISE  165 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH-HhhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence            999999999999999999999999999988888999999999994 4788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 027985          169 VFFSIAREIKQRLVESDS  186 (216)
Q Consensus       169 l~~~l~~~~~~~~~~~~~  186 (216)
                      +|+.|...+.++..+...
T Consensus       166 lFe~Lt~~MiE~~s~~qr  183 (218)
T KOG0088|consen  166 LFESLTAKMIEHSSQRQR  183 (218)
T ss_pred             HHHHHHHHHHHHhhhccc
Confidence            999999998887755443

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=9.1e-35  Score=212.13  Aligned_cols=190  Identities=49%  Similarity=0.897  Sum_probs=156.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|+|||||+++|.+..+.. .+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 5677777677666778888889999999999999888888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.. ...+..++++.+++..+++++++||++|+|++++|.+|.
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887666789999999999964 345667788888888889999999999999999999999


Q ss_pred             HHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCC
Q 027985          175 REIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC  214 (216)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  214 (216)
                      +.+.....+.....+   -     .-+......+++++||
T Consensus       160 ~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~  191 (191)
T cd04112         160 KELKHRKYEQPDEGK---F-----KISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHHhccccCCCCc---E-----EeccccCcccccCCCC
Confidence            998766433221111   1     1234445556667787

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.9e-34  Score=213.31  Aligned_cols=168  Identities=22%  Similarity=0.478  Sum_probs=148.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....+||+++|.+|+|||+|+++|....+...+.|+.+..+. ..+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            3346789999999999999999999999999888888875554 457888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEE
Q 027985           91 ILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFE  157 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~  157 (216)
                      +|+|||++++++++. +..|+..+..... ..|+++|+||+|+.+.           ...+..++++.+++.+++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 4789999887653 6899999999998542           356888999999999998 6999


Q ss_pred             EecCCCC-CHHHHHHHHHHHHHHH
Q 027985          158 TSAKTNF-NVEQVFFSIAREIKQR  180 (216)
Q Consensus       158 ~Sa~~~~-~i~~l~~~l~~~~~~~  180 (216)
                      |||++|+ ||+++|..++..+.+.
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHh
Confidence            9999998 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=5.5e-34  Score=210.69  Aligned_cols=172  Identities=51%  Similarity=0.899  Sum_probs=153.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45779999999999999999999999988888888888888778888888888999999999999888888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |+|||++++++++.+..|+..+........|+++|+||+|+.+ ...+..++++.+++.+++.++++||+++.|++++|.
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999888776656799999999999854 456778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027985          172 SIAREIKQRLVES  184 (216)
Q Consensus       172 ~l~~~~~~~~~~~  184 (216)
                      ++.+.+.++..+.
T Consensus       162 ~l~~~~~~~~~~~  174 (210)
T PLN03108        162 KTAAKIYKKIQDG  174 (210)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999988765433

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.7e-34  Score=207.98  Aligned_cols=164  Identities=50%  Similarity=0.866  Sum_probs=147.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998778888888887788888888899999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |.++++++..+..|+..+........|+++|+||.|+.+ ...+..++++.+++..++.++++||++|.|++++|.+|.+
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999877666789999999999864 3456777888888888899999999999999999999999


Q ss_pred             HHHHH
Q 027985          176 EIKQR  180 (216)
Q Consensus       176 ~~~~~  180 (216)
                      .+..+
T Consensus       160 ~~~~~  164 (188)
T cd04125         160 LIIKR  164 (188)
T ss_pred             HHHHH
Confidence            98754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.1e-34  Score=205.85  Aligned_cols=164  Identities=48%  Similarity=0.860  Sum_probs=147.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999888888877777777788888889999999999999999899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|.++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999988776656789999999999965 445677888899998899999999999999999999998


Q ss_pred             HHHHH
Q 027985          175 REIKQ  179 (216)
Q Consensus       175 ~~~~~  179 (216)
                      ..+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            87753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=3.2e-34  Score=212.80  Aligned_cols=164  Identities=34%  Similarity=0.582  Sum_probs=146.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999889999999888888888864 468999999999999899999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ||++++++++.+..|+..+.....   .+.|+++|+||.|+.+ .+.+..+..+.+++..++.++++||++|+|++++|+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999999877643   3468899999999964 456777888899998899999999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          172 SIAREIKQR  180 (216)
Q Consensus       172 ~l~~~~~~~  180 (216)
                      +|...+...
T Consensus       160 ~l~~~l~~~  168 (215)
T cd04109         160 QLAAELLGV  168 (215)
T ss_pred             HHHHHHHhc
Confidence            999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.8e-34  Score=205.33  Aligned_cols=166  Identities=78%  Similarity=1.274  Sum_probs=150.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999999998888898888887778888888889999999999998888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||+++++++..+.+|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999877666789999999999965 4456777888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      |.+.+..
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9988753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=8.8e-34  Score=207.38  Aligned_cols=165  Identities=34%  Similarity=0.642  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|+|||||+++|+++.+.. .+.++.+..+....+.+++..+.+.|||++|++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5777777777777788898889999999999999888888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---CCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES---KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.   ...+..++++.++...++.++++||++++|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887653 36899999999998542   234556677888888889999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          172 SIAREIKQRL  181 (216)
Q Consensus       172 ~l~~~~~~~~  181 (216)
                      +|.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999887544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=4.8e-34  Score=204.82  Aligned_cols=160  Identities=34%  Similarity=0.684  Sum_probs=143.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+++|||+|+.++..+.+...+.++.+..+ ...+.+++..+++.||||+|++++..++..+++.++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888888887554 455778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------CCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985           96 DVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK---------RAVPTAKGQELADEYGI-KFFETSAKTNF  164 (216)
Q Consensus        96 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      |++++++++.+ ..|+..+..... +.|+++|+||+|+.+..         ..+..++++.+++..++ .+++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689998876654 79999999999995432         34788899999999998 69999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREI  177 (216)
Q Consensus       165 ~i~~l~~~l~~~~  177 (216)
                      ||+++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=3.7e-34  Score=208.75  Aligned_cols=165  Identities=34%  Similarity=0.616  Sum_probs=141.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|.+|+|||||+++|+...+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888777777765443 3455677877899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      +++.++++.+..|+..+.....   .+.|+++|+||+|+.+ ...+...+...+++..++.++++||++|.|++++|+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999988866532   4689999999999964 45566777788888889999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027985          174 AREIKQRLVE  183 (216)
Q Consensus       174 ~~~~~~~~~~  183 (216)
                      .+.+.++...
T Consensus       159 ~~~l~~~~~~  168 (190)
T cd04144         159 VRALRQQRQG  168 (190)
T ss_pred             HHHHHHhhcc
Confidence            9887654444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.3e-35  Score=196.79  Aligned_cols=172  Identities=47%  Similarity=0.779  Sum_probs=157.2

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...|.++++|+|++-+|||+|++.|+.+.+.+-.+|+++.+++...+++ +|..+++++|||+|++.+.++...++++.-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            3568899999999999999999999999999999999999998888777 466799999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-C-CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-D-NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      ++++|||.++.++|+.+..|+.+...+.. + ++-+.+|++|+|+. ..+++..++++.+++.+++.++++|+++|.|++
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe  162 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE  162 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence            99999999999999999999988876654 3 34446789999995 588999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027985          168 QVFFSIAREIKQRLVE  183 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~~  183 (216)
                      +.|..|.+.+.....+
T Consensus       163 EAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  163 EAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988777

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=7.2e-34  Score=205.10  Aligned_cols=164  Identities=26%  Similarity=0.557  Sum_probs=145.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....+||+++|.+|+|||||+++|..+.+...+.|+.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            34678999999999999999999999999888888887554 45677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEE
Q 027985           92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFET  158 (216)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~  158 (216)
                      |+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.           ...+..++++.+++.+++ .|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 789999887654 6899999999998542           345889999999999996 89999


Q ss_pred             ecCCCCC-HHHHHHHHHHHH
Q 027985          159 SAKTNFN-VEQVFFSIAREI  177 (216)
Q Consensus       159 Sa~~~~~-i~~l~~~l~~~~  177 (216)
                      ||++|+| |+++|..++..+
T Consensus       160 SAk~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         160 SALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHH
Confidence            9999998 999999988754

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=6.1e-34  Score=207.43  Aligned_cols=165  Identities=40%  Similarity=0.657  Sum_probs=143.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999988777777765444 4567788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..+++..+++++++||++|.|++++|++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            999999999999999998887654 34789999999999854 4456677788888888899999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          173 IAREIKQR  180 (216)
Q Consensus       173 l~~~~~~~  180 (216)
                      |.+.+.+.
T Consensus       162 l~~~l~~~  169 (189)
T PTZ00369        162 LVREIRKY  169 (189)
T ss_pred             HHHHHHHH
Confidence            99888654

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.7e-33  Score=208.19  Aligned_cols=165  Identities=25%  Similarity=0.519  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||+|+++|....+...+.|+....+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998888898875543 56778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |++++++++.+. .|...+... ..+.|+++|+||+|+.+.           ...+..++++.+++..++ .|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999995 465555443 457999999999999542           123778899999999995 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHHh
Q 027985          163 NFN-VEQVFFSIAREIKQRLV  182 (216)
Q Consensus       163 ~~~-i~~l~~~l~~~~~~~~~  182 (216)
                      +++ |+++|..+......+..
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccC
Confidence            885 99999998887765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.5e-33  Score=205.51  Aligned_cols=163  Identities=30%  Similarity=0.608  Sum_probs=141.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+++|..++|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            358999999999999999999999999888888887544 3456778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhC-CcEEEEec
Q 027985           94 VYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYG-IKFFETSA  160 (216)
Q Consensus        94 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (216)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||.|+.+..           ..+..++++.+++..+ +.++++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999997 5877776654 479999999999996432           2356778899999888 58999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~  178 (216)
                      ++|+||+++|++|.+.+.
T Consensus       160 k~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998774

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-34  Score=190.81  Aligned_cols=171  Identities=47%  Similarity=0.874  Sum_probs=159.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ++..+-+||+++|..|+|||.|+++|+.+.|++..-.+.+.++..+++++++.+++++||||+|+++++++...+++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++|+|||++...+|+-+.+|+.++..+...++-.|+|+||+|+.+ .+++.....++|.+...+-+.++||++-+|++.|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            999999999999999999999999999887888899999999954 6678889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          170 FFSIAREIKQRL  181 (216)
Q Consensus       170 ~~~l~~~~~~~~  181 (216)
                      |..+.-.+...-
T Consensus       161 f~~~a~rli~~a  172 (213)
T KOG0095|consen  161 FLDLACRLISEA  172 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            998877665443

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.6e-33  Score=201.24  Aligned_cols=163  Identities=71%  Similarity=1.147  Sum_probs=147.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999998888888888788888888888888999999999999988889999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ||+++++++..+..|+..+......+.|+++|+||.|+.+ ...+..+++..+++..+++++++||++|+|++++|.+|.
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999998877656789999999999854 445677888889998899999999999999999999998


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.6e-33  Score=200.00  Aligned_cols=162  Identities=56%  Similarity=0.980  Sum_probs=145.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887777777777777789999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |.+++++++.+..|+..+........|+++|+||+|+.+ ......+....+++..++.++++||++|.|++++|++|.+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999998777656789999999999965 3445667788888888899999999999999999999988


Q ss_pred             HHH
Q 027985          176 EIK  178 (216)
Q Consensus       176 ~~~  178 (216)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd01865         161 IIC  163 (165)
T ss_pred             HHH
Confidence            764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.9e-33  Score=202.53  Aligned_cols=161  Identities=25%  Similarity=0.551  Sum_probs=142.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ++||+++|.+|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999888888876554 45678888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecC
Q 027985           95 YDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAK  161 (216)
Q Consensus        95 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (216)
                      ||++++++++.+ ..|+..+..... ..|+++|+||+|+.+.           ...+..++++.+++.+++ .++++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 789998887654 7899999999999541           245888999999999997 89999999


Q ss_pred             CCCC-HHHHHHHHHHHH
Q 027985          162 TNFN-VEQVFFSIAREI  177 (216)
Q Consensus       162 ~~~~-i~~l~~~l~~~~  177 (216)
                      +|+| |+++|..++...
T Consensus       159 ~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         159 TSEKSVRDIFHVATMAC  175 (178)
T ss_pred             cCCcCHHHHHHHHHHHH
Confidence            9995 999999988854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.2e-33  Score=199.51  Aligned_cols=160  Identities=55%  Similarity=0.988  Sum_probs=145.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      ++|+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888888888888888889999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |++++++++.+..|+..+......+.|+++|+||.|+.+ ...+..++...+++..++.++++||++|.|++++|.+|.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            999999999999999988876655789999999999854 4556778899999988999999999999999999999976


Q ss_pred             H
Q 027985          176 E  176 (216)
Q Consensus       176 ~  176 (216)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            4

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.3e-33  Score=201.33  Aligned_cols=163  Identities=33%  Similarity=0.592  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999877777776444 44567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.+++..++.++++||++|.||+++|++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999888776643 35799999999999854 45678888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          174 AREIKQ  179 (216)
Q Consensus       174 ~~~~~~  179 (216)
                      ...+.+
T Consensus       160 ~~~~~~  165 (172)
T cd04141         160 VREIRR  165 (172)
T ss_pred             HHHHHH
Confidence            988765

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.3e-33  Score=202.83  Aligned_cols=163  Identities=27%  Similarity=0.547  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|..|+|||||+++|+...+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999888887788889988899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES----KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |++++++++.+..|+..+........| ++|+||+|+...    ......++.+.+++..++.++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776554566 688999998531    111234567778888889999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          172 SIAREIKQ  179 (216)
Q Consensus       172 ~l~~~~~~  179 (216)
                      ++.+.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99988864

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.8e-33  Score=201.82  Aligned_cols=167  Identities=51%  Similarity=0.937  Sum_probs=146.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT   82 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~   82 (216)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.          +..+.+.|||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999988888888877766666554          3558999999999999999999


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      .+++++|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..+++++++||+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999999999887653 34689999999999965 45567788899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (216)
                      +|.|++++|++|.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999877643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=5.5e-33  Score=198.85  Aligned_cols=166  Identities=52%  Similarity=0.924  Sum_probs=149.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999988888888888887788888888889999999999998888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||+++++++..+..|+..+......+.|+++|+||.|+.+ ...+..++++.++...++.++++||++++|++++|.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999877666799999999999864 4456778888888888999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      +.+.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=5.9e-33  Score=202.06  Aligned_cols=167  Identities=31%  Similarity=0.584  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+.++. ..+... +..+.+.||||||++.+..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            58999999999999999999999998887777765543 345554 6678999999999999988888899999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---CCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHH
Q 027985           95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES---KRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQV  169 (216)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l  169 (216)
                      ||++++++++.+. .|+..+.... .+.|+++|+||.|+...   ...+..++++.++...++ .++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 4777766543 47899999999998542   234667888899999887 8999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 027985          170 FFSIAREIKQRLVES  184 (216)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (216)
                      |+.+.+.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999987555444

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=3.7e-33  Score=199.47  Aligned_cols=162  Identities=33%  Similarity=0.730  Sum_probs=146.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999888888888888888899999999999988888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAA-----DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      |.+++++++.+..|+..+.....     .+.|+++|+||+|+.+ ......++.+.++...++.++++||++|+|++++|
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999877653     4689999999999864 34567777888888888999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          171 FSIAREIK  178 (216)
Q Consensus       171 ~~l~~~~~  178 (216)
                      ++|.+.+.
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99988764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=6.6e-33  Score=197.84  Aligned_cols=163  Identities=52%  Similarity=0.913  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.++|+|+|.+++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            56899999999999999999999999888888888888888888888888899999999999988888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |||++++.++..+.+|+..+......+.|+++|+||.|+.+ ...+..++.+.++...++.++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999998877665689999999999865 34566778888888888999999999999999999999


Q ss_pred             HHHH
Q 027985          174 AREI  177 (216)
Q Consensus       174 ~~~~  177 (216)
                      .+.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=6.7e-33  Score=197.84  Aligned_cols=163  Identities=48%  Similarity=0.879  Sum_probs=144.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            35699999999999999999999998888888888877777788888888789999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~  171 (216)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ......+.+..+++..+. .++++||++|.|++++|+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            999999999999999999999876666799999999999965 345667778888888775 789999999999999999


Q ss_pred             HHHHH
Q 027985          172 SIARE  176 (216)
Q Consensus       172 ~l~~~  176 (216)
                      +|.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=3e-32  Score=201.81  Aligned_cols=172  Identities=49%  Similarity=0.807  Sum_probs=144.1

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ..+....+||+|+|.+|+|||||+++|++..+. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            344556799999999999999999999988774 4567777777777788888888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985           89 MGILLVYDVTDESSFNNIRN-WMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                      |++|+|||++++++++.+.. |...+.... ..+.|+++|+||+|+.. ...+..++...++...++.+|++||+++.|+
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v  165 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENV  165 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999976 444444332 23578999999999864 3446677788888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027985          167 EQVFFSIAREIKQRLV  182 (216)
Q Consensus       167 ~~l~~~l~~~~~~~~~  182 (216)
                      +++|++|.+.+.....
T Consensus       166 ~~l~~~l~~~~~~~~~  181 (211)
T PLN03118        166 EQCFEELALKIMEVPS  181 (211)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999976543

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=6e-33  Score=197.48  Aligned_cols=161  Identities=42%  Similarity=0.820  Sum_probs=151.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.|||++|++.+..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998888999999999999999999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      .+++++++.+..|+..+........|+++|+||.|+.+ .+.+..++++.+++.++..++++||+++.||.++|..+++.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999988876789999999999865 56888899999999999999999999999999999999988


Q ss_pred             HH
Q 027985          177 IK  178 (216)
Q Consensus       177 ~~  178 (216)
                      +.
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=9.5e-33  Score=205.10  Aligned_cols=165  Identities=28%  Similarity=0.566  Sum_probs=145.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .+..+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..+.+.|||++|++.+..++..+++.++++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            37889999999999999999999999999888889988888777777777779999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+  ..+..+.+ .+.+..++.+|++||++|.|++++|.
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~  165 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL  165 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence            99999999999999999999987764 4799999999999853  33344444 66777788999999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          172 SIAREIKQR  180 (216)
Q Consensus       172 ~l~~~~~~~  180 (216)
                      +|.+.+.+.
T Consensus       166 ~l~~~~~~~  174 (219)
T PLN03071        166 YLARKLAGD  174 (219)
T ss_pred             HHHHHHHcC
Confidence            999888643

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.7e-32  Score=196.52  Aligned_cols=163  Identities=37%  Similarity=0.707  Sum_probs=143.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|.+|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998899998888887888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKR-AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      +++++++..+..|+..+.... ....|+++|+||.|+.+... ....++++.+++..++.++++||++|.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999998886543 44578899999999854322 3345667788888889999999999999999999999


Q ss_pred             HHHHH
Q 027985          175 REIKQ  179 (216)
Q Consensus       175 ~~~~~  179 (216)
                      ..+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.6e-32  Score=197.38  Aligned_cols=161  Identities=28%  Similarity=0.569  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|..+.+...+.|+.+..+. ..+..++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888765543 4567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEEecC
Q 027985           95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFETSAK  161 (216)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (216)
                      ||++++++++.+. .|+..+.... .+.|+++|+||+|+.+.           .+.+..++++.+++..+ +.++++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 4887776654 46899999999998543           24567788888998887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREI  177 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~  177 (216)
                      +|+|++++|+.++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999988754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=2.2e-32  Score=194.81  Aligned_cols=163  Identities=58%  Similarity=0.995  Sum_probs=147.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999998888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |+.++.+++.+..|+..+..+...+.|+++|+||+|+.. ...+..+.++.+.+..++.++++|++++.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998877656899999999999854 3456777888888888999999999999999999999998


Q ss_pred             HHHH
Q 027985          176 EIKQ  179 (216)
Q Consensus       176 ~~~~  179 (216)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T smart00175      160 EILK  163 (164)
T ss_pred             HHhh
Confidence            8754

Rab GTPases are implicated in vesicle trafficking.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.8e-32  Score=194.73  Aligned_cols=160  Identities=32%  Similarity=0.676  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|++|+|||||+++++...+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888888877777777777778899999999999998888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+..... +.|+++|+||+|+.+  .... .....+.+..++.++++||++|+|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            99999999999999999987765 799999999999863  2233 3344566667789999999999999999999998


Q ss_pred             HHHH
Q 027985          176 EIKQ  179 (216)
Q Consensus       176 ~~~~  179 (216)
                      .+.+
T Consensus       157 ~~~~  160 (166)
T cd00877         157 KLLG  160 (166)
T ss_pred             HHHh
Confidence            8864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=3.8e-32  Score=197.95  Aligned_cols=161  Identities=30%  Similarity=0.558  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+|+|.+|+|||||+++|....+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3799999999999999999999999887778776554 345667777789999999999999989999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHHhC-CcEEEEecCC
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR-----------AVPTAKGQELADEYG-IKFFETSAKT  162 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+.+...           .+..++...+++..+ +.++++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5888887654 3789999999999964321           345667777887777 6899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIK  178 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~  178 (216)
                      |+|++++|.+|.+.+.
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998886

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.2e-32  Score=194.35  Aligned_cols=160  Identities=49%  Similarity=0.852  Sum_probs=144.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888887787778888888889999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+......+.|+++|+||.|+.+ ...+..+++..+++..++.++++||+++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999988776666899999999999865 4567788888899999999999999999999999999886


Q ss_pred             H
Q 027985          176 E  176 (216)
Q Consensus       176 ~  176 (216)
                      .
T Consensus       160 ~  160 (161)
T cd04113         160 S  160 (161)
T ss_pred             h
Confidence            5

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.3e-32  Score=194.55  Aligned_cols=160  Identities=39%  Similarity=0.700  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||++++....+...+.++.+ +.+...+.+++..+.+.|||+||++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777777665 445566778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++...+++..+++++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999998887653 34689999999999865 345666777788888888999999999999999999998


Q ss_pred             HHH
Q 027985          175 REI  177 (216)
Q Consensus       175 ~~~  177 (216)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.9e-33  Score=184.51  Aligned_cols=181  Identities=46%  Similarity=0.794  Sum_probs=165.1

Q ss_pred             cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      |++..++-+|++|+|+.|+|||.|+.+|...++......+.+.++....+...++.++++||||+|++.+.+....+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            34567899999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      +-++++|||+++.++|+.+..|+..++.....++-+++++||.|+. ..+++...++..|+.++.+.+.++|+++|+|+.
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~-~~R~VtflEAs~FaqEnel~flETSa~TGeNVE  160 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVE  160 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC-hhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence            9999999999999999999999999999888888889999999994 478899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCC
Q 027985          168 QVFFSIAREIKQRLVESDSKAE  189 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~~~~~~~~  189 (216)
                      |.|-.....+..+...-.-+.+
T Consensus       161 EaFl~c~~tIl~kIE~GElDPe  182 (214)
T KOG0086|consen  161 EAFLKCARTILNKIESGELDPE  182 (214)
T ss_pred             HHHHHHHHHHHHHHhhcCCCHH
Confidence            9999888888766554433333

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=6.4e-32  Score=193.68  Aligned_cols=163  Identities=42%  Similarity=0.718  Sum_probs=144.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .+..+||+++|.+++|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            35679999999999999999999999998887788887777777788888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV  166 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (216)
                      ++|||++++++++.+..|+..+....    ..+.|+++|+||+|+.  ...+..++++.+++..+. .++++||++|.|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  159 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNV  159 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence            99999999999999999988776543    2468999999999985  356677888899888884 8999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          167 EQVFFSIARE  176 (216)
Q Consensus       167 ~~l~~~l~~~  176 (216)
                      +++|+++++.
T Consensus       160 ~~~~~~~~~~  169 (170)
T cd04116         160 AAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=4.5e-32  Score=193.38  Aligned_cols=161  Identities=37%  Similarity=0.702  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998888777777665433 456777887889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |.+++.+++.+.+|+..+.... ..+.|+++|+||+|+.+ ...+..++...+++..+++++++||++|.|++++|.+|.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999998887643 45789999999999965 344566677888888889999999999999999999998


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            7653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=8.3e-32  Score=191.42  Aligned_cols=160  Identities=32%  Similarity=0.569  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||+++|....+.+...++.+.+.+...+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777666666666777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |.+++.++..+..|+..+..... +.|+++|+||+|+..   . .......+++..+++++++||++|.|++++|+.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~---~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDP---S-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCch---h-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998876543 689999999999842   1 233455666777889999999999999999999998


Q ss_pred             HHHHH
Q 027985          176 EIKQR  180 (216)
Q Consensus       176 ~~~~~  180 (216)
                      .+.++
T Consensus       156 ~~~~~  160 (161)
T cd04124         156 LAVSY  160 (161)
T ss_pred             HHHhc
Confidence            87654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=7.2e-32  Score=191.86  Aligned_cols=159  Identities=36%  Similarity=0.701  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +||+++|.+++|||||+++|++..+...+.++.+.++....+.+.  +..+.+.|||+||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888877766667676  667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |||+++++++..+..|+..+.... .+.|+++|+||+|+.. ...+..++++.+++..+++++++||+++.|++++|++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999999999998886544 4789999999999854 34566778888999999999999999999999999998


Q ss_pred             HHH
Q 027985          174 ARE  176 (216)
Q Consensus       174 ~~~  176 (216)
                      ...
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=8.7e-32  Score=191.25  Aligned_cols=160  Identities=42%  Similarity=0.759  Sum_probs=144.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+++|++++|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888888888888888888888789999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |.+++++++.+..|+..+......+.|+++|+||+|+.+ ......++...+++..++.++++||+++.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999988766555699999999999853 4556777888888888899999999999999999999987


Q ss_pred             H
Q 027985          176 E  176 (216)
Q Consensus       176 ~  176 (216)
                      .
T Consensus       160 ~  160 (161)
T cd01861         160 A  160 (161)
T ss_pred             h
Confidence            5

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=9.9e-32  Score=193.17  Aligned_cols=159  Identities=33%  Similarity=0.619  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||+.+++.+.+...+.++.. ..+...+.+++..+.+.||||+|++.+..++..+++.+|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999999888888765 344456677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |+++++++..+. .|+..+.... .+.|+++|+||+|+.+.           ...+..++++.+++..+. .+++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999996 5877776654 47999999999999542           135778889999999984 999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIARE  176 (216)
Q Consensus       163 ~~~i~~l~~~l~~~  176 (216)
                      |+|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.1e-31  Score=191.18  Aligned_cols=160  Identities=36%  Similarity=0.646  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      ++|+++|.+|+|||||++++..+.+...+.++.. +.+...+.+++..+.+.|||+||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988777777654 455567778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+...+...+++..++.++++||++|.|++++|.++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988887653 35789999999999854 345566677888888888999999999999999999998


Q ss_pred             HHH
Q 027985          175 REI  177 (216)
Q Consensus       175 ~~~  177 (216)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.2e-31  Score=191.15  Aligned_cols=161  Identities=42%  Similarity=0.719  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||+++|.+..+...+.++.+ +.+...+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888777766654 333456667777889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ......+++..+++..++.++++||++|.|++++|++|.
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            9999999999999988876543 34689999999999864 345667788888888889999999999999999999998


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T smart00173      159 REIR  162 (164)
T ss_pred             HHHh
Confidence            7764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.6e-31  Score=190.74  Aligned_cols=159  Identities=33%  Similarity=0.522  Sum_probs=135.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||++++++..+...+.++....+ ...+..+...+.+.+||++|++.+..++..+++.++++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777665333 444566677789999999999998888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |++++++++.+..|+..+.....   .+.|+++|+||+|+.+ ...+..+++..++...++.++++||++|+|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            99999999999999887766432   4689999999999954 3456677778888888899999999999999999999


Q ss_pred             HHHH
Q 027985          173 IARE  176 (216)
Q Consensus       173 l~~~  176 (216)
                      |...
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            8753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.1e-31  Score=189.33  Aligned_cols=159  Identities=38%  Similarity=0.667  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||+++|++..+...+.++.+.. +...+.+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            689999999999999999999988877777776533 3455677887788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |+++..+++.+..|+..+.... ..+.|+++|+||+|+.+  ......++..+++..++.++++||++|.|++++|++|.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988887654 34789999999999865  45566778888888889999999999999999999998


Q ss_pred             HHH
Q 027985          175 REI  177 (216)
Q Consensus       175 ~~~  177 (216)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1.7e-31  Score=195.30  Aligned_cols=164  Identities=23%  Similarity=0.391  Sum_probs=135.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYRG   87 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   87 (216)
                      +||+|+|.+|+|||||+++|.+..+...+.|+.+.+.+...+.+++..+.+.||||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999998888888876766667778888889999999996543211        2234789


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCC
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTN  163 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  163 (216)
                      +|++|+|||++++++++.+..|+..+....   ..++|+++|+||+|+.+ .+.+..++++.++. ..++.++++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999999998887654   35789999999999965 34456666666654 45789999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIKQR  180 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (216)
                      .|++++|+.++..+..+
T Consensus       160 ~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         160 WHILLLFKELLISATTR  176 (198)
T ss_pred             CCHHHHHHHHHHHhhcc
Confidence            99999999999877643

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-31  Score=176.47  Aligned_cols=180  Identities=47%  Similarity=0.860  Sum_probs=163.8

Q ss_pred             CCCCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985            1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (216)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (216)
                      |+++|    ....+.+|-+++|.-|+|||.|+..|+...|-.....+.+.++....++..+.+++++|||+.|++++...
T Consensus         1 m~~~p----ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfrav   76 (215)
T KOG0097|consen    1 MTAAP----YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV   76 (215)
T ss_pred             CCCCc----cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH
Confidence            45555    67789999999999999999999999999987777888888888899999999999999999999999999


Q ss_pred             cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA  160 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ...+++.+.+.++|||++...++..+..|+........++..+++++||.|+ +.++.+..++++.|+++++..+.++||
T Consensus        77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-e~qrdv~yeeak~faeengl~fle~sa  155 (215)
T KOG0097|consen   77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-ESQRDVTYEEAKEFAEENGLMFLEASA  155 (215)
T ss_pred             HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-hhcccCcHHHHHHHHhhcCeEEEEecc
Confidence            9999999999999999999999999999999988888778888999999999 458889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          161 KTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      ++|+|+.+.|-...+.++++..+-.
T Consensus       156 ktg~nvedafle~akkiyqniqdgs  180 (215)
T KOG0097|consen  156 KTGQNVEDAFLETAKKIYQNIQDGS  180 (215)
T ss_pred             cccCcHHHHHHHHHHHHHHhhhcCc
Confidence            9999999999888888887765543

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.6e-31  Score=188.47  Aligned_cols=162  Identities=48%  Similarity=0.838  Sum_probs=144.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|++++|||||+++|++..+.....++.+..+....+.+++..+.+.|||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998777777777667777888888889999999999998888888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      +|+++++++..+..|+..+........|+++++||+|+.+ ......++...+....++.++++||++|.|++++|++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999998877656789999999999864 345667778888888889999999999999999999998


Q ss_pred             HHH
Q 027985          175 REI  177 (216)
Q Consensus       175 ~~~  177 (216)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=4.4e-31  Score=188.14  Aligned_cols=161  Identities=40%  Similarity=0.638  Sum_probs=138.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|+|||||++++++..+...+.++.+.. +.....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999999999999988877766666533 344566788778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ...+..++...+++..++.++++||++|.|++++|++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999998887643 34689999999999854 34456667888888888999999999999999999999


Q ss_pred             HHHH
Q 027985          174 AREI  177 (216)
Q Consensus       174 ~~~~  177 (216)
                      ...+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=6.4e-31  Score=188.48  Aligned_cols=162  Identities=47%  Similarity=0.868  Sum_probs=142.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccccEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   93 (216)
                      .++|+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.|||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999998888888888878887888888888999999999998875 567888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC---CCCHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT---NFNVEQV  169 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~l  169 (216)
                      |||++++.++..+..|+..+.... ....|+++|+||+|+.. ...+..++++.+++..++.++++||++   +.+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            999999999999999998887654 35699999999999854 455677788888888889999999999   8899999


Q ss_pred             HHHHHHHH
Q 027985          170 FFSIAREI  177 (216)
Q Consensus       170 ~~~l~~~~  177 (216)
                      |..+.+.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99988765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-33  Score=186.97  Aligned_cols=180  Identities=48%  Similarity=0.882  Sum_probs=161.4

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC---------CeEEEEEEEeCCCcccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      +.++-+|.+.+|.+|+|||+|+-+++...|......++++++..+.+.++         +..+.+++|||+|++++.++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            45688999999999999999999999999999999999999988877662         345889999999999999999


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ..|++++-+++++||+++.++|-++++|+..+..+. +.+..+|+++||+|+.+ .+.++.+++..++++.+++||++||
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeeecc
Confidence            999999999999999999999999999999987655 45677899999999954 7889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhcccCCCc
Q 027985          161 KTNFNVEQVFFSIAREIKQRLVESDSKAEPQ  191 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~  191 (216)
                      -+|.|+.+..+.|.+.++++..+.-.+.+-+
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~v~~s~~p  194 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQCVEKSEIP  194 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999888766554443

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.7e-31  Score=192.76  Aligned_cols=156  Identities=28%  Similarity=0.629  Sum_probs=137.8

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh
Q 027985           21 IGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE  100 (216)
Q Consensus        21 ~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (216)
                      +|.+|+|||||+++|+...+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888888888888888888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          101 SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       101 ~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      .++..+..|+..+.... .++|+++|+||+|+..  ..+..+. ..+++..++.+++|||++|+||+++|.+|...+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 4799999999999854  3344443 357777889999999999999999999999888643

Ran is involved in the active transport of proteins through nuclear pores.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.1e-30  Score=185.53  Aligned_cols=161  Identities=40%  Similarity=0.791  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||+++|++..+.....++.+.......+...+..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887766666666666666777777789999999999988888988999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |++++++++.+..|+..+......+.|+++|+||+|+.. ...+..+++..+.+..++.++++|+++++|+++++++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998887766789999999999864 4456667778888888899999999999999999999987


Q ss_pred             HH
Q 027985          176 EI  177 (216)
Q Consensus       176 ~~  177 (216)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            64

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1e-30  Score=187.62  Aligned_cols=164  Identities=44%  Similarity=0.775  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888877788777777778888888889999999999988888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~  170 (216)
                      |+.++++++.+..|...+.....    .+.|+++|+||+|+.+ ......++.+.+.+..+ ..++++|+++|.|++++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            99999999999888877655432    3689999999999964 34556777788888877 799999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          171 FSIAREIKQR  180 (216)
Q Consensus       171 ~~l~~~~~~~  180 (216)
                      ++|.+.+.+.
T Consensus       160 ~~i~~~~~~~  169 (172)
T cd01862         160 ETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHhc
Confidence            9999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.2e-30  Score=186.04  Aligned_cols=160  Identities=32%  Similarity=0.634  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +||+|+|++|+|||||+++|...  .+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  6777888888777776666664 56689999999999988888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+ ...+.....+.+....++.++++||+++.|++++|+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            9999999999999999998887764 4689999999999854 3445666667777777889999999999999999999


Q ss_pred             HHHHH
Q 027985          173 IAREI  177 (216)
Q Consensus       173 l~~~~  177 (216)
                      |.+.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            98764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=1e-30  Score=190.62  Aligned_cols=159  Identities=30%  Similarity=0.504  Sum_probs=129.0

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHhcCC-----CCCccccceee-EEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLL-RFSDDS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   79 (216)
                      .+||+++|..|+|||+|+. ++.+..     +...+.|+.+. +.+...        +.+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 565543     34556677641 222222        25678889999999999875  3


Q ss_pred             ccccccccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------CCCCC
Q 027985           80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES------------------KRAVP  140 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------------~~~~~  140 (216)
                      +...+++++|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.                  ...+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999997 5888887654 36899999999998541                  36788


Q ss_pred             HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985          141 TAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      .++++.+++.+++.|++|||++|+||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=1e-30  Score=188.09  Aligned_cols=159  Identities=33%  Similarity=0.632  Sum_probs=136.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEEC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (216)
                      |+|+|.+|+|||||+++|.+..+...+.++.... +...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999999999999999988777776544 345667888888999999999999998999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985           98 TDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETSAKTNF  164 (216)
Q Consensus        98 ~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      +++++++.+. .|+..+..... +.|+++|+||+|+....           ..+..+++..+++..+. .++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 58888876544 79999999999985421           23667788889999986 99999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIK  178 (216)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (216)
                      |++++|+.+.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=2.5e-30  Score=183.73  Aligned_cols=159  Identities=51%  Similarity=0.922  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788777777777778887789999999999998888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |.+++.+++.+..|+..+..+. ..+.|+++|+||+|+.+  .....++...++...++.++++|+++|+|++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999998887764 45789999999999863  45566788888888899999999999999999999987


Q ss_pred             HH
Q 027985          175 RE  176 (216)
Q Consensus       175 ~~  176 (216)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            65

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=1.4e-30  Score=184.25  Aligned_cols=154  Identities=24%  Similarity=0.404  Sum_probs=129.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|+.|+|||||+.+++...+...+.++.  ..+...+.+++..+.+.|||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~--~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG--GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc--cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            589999999999999999999888866655542  23346678888888999999999864     24567899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDE-SKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |++++.+++.+..|+..+..... .+.|+++|+||.|+.. ..+.+..++++.+++..+ +.|++|||++|+||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877642 5689999999999853 356678888888988764 89999999999999999999


Q ss_pred             HHHH
Q 027985          173 IARE  176 (216)
Q Consensus       173 l~~~  176 (216)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=2.2e-30  Score=195.06  Aligned_cols=161  Identities=26%  Similarity=0.433  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||+++|++..+...+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988877777765 556667788888899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-hCCcEEEEecCCCCC
Q 027985           96 DVTDESSFNNIRNWMRNIDQH---------AADNVNKILVGNKADMDESKRAVPTAKGQELADE-YGIKFFETSAKTNFN  165 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~  165 (216)
                      |+++.++++.+..|+..+...         ...+.|+++|+||+|+.. ...+..+++..+... .++.++++||++|.|
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            999999999999998888653         224689999999999964 345667777776654 357899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIK  178 (216)
Q Consensus       166 i~~l~~~l~~~~~  178 (216)
                      ++++|++|...+.
T Consensus       159 I~elf~~L~~~~~  171 (247)
T cd04143         159 LDEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=3.9e-30  Score=185.08  Aligned_cols=160  Identities=31%  Similarity=0.590  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|++|+|||||+++|....+...+.++.. +.+...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988777766654 334446678888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |.+++.+++.+. .|+..+... ..+.|+++|+||+|+.+..           ..+..++++.+++..++ .++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999986 577777655 5579999999999985432           25667888889988886 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREI  177 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (216)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=6.7e-30  Score=182.96  Aligned_cols=164  Identities=49%  Similarity=0.874  Sum_probs=143.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+++|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||+||+..+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988887777777777777778888888889999999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||..++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+..+.+.+.....++++||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            999999999999999999888776666789999999999864 4456666777787777789999999999999999999


Q ss_pred             HHHHH
Q 027985          173 IAREI  177 (216)
Q Consensus       173 l~~~~  177 (216)
                      |.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1.8e-30  Score=185.87  Aligned_cols=163  Identities=23%  Similarity=0.319  Sum_probs=138.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .+.+||+++|.+|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46899999999999999999999999988 78888887777767778888878999999999998888888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF  170 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~  170 (216)
                      ++|||++++++++.+..|+..+...  .+.|+++|+||+|+.+. ......+.+.+++.+++ .++++||++++|++++|
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf  158 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF  158 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence            9999999999999998888765332  36899999999998542 22333445677777776 47999999999999999


Q ss_pred             HHHHHHHH
Q 027985          171 FSIAREIK  178 (216)
Q Consensus       171 ~~l~~~~~  178 (216)
                      +.|.+.+.
T Consensus       159 ~~l~~~~~  166 (169)
T cd01892         159 TKLATAAQ  166 (169)
T ss_pred             HHHHHHhh
Confidence            99988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=5.3e-30  Score=184.25  Aligned_cols=158  Identities=32%  Similarity=0.595  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||++++.+..+...+.++. .+.+...+.+++..+.+.|||+||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988887777765 3455556778887889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |++++++++.+. .|+..+.... .+.|+++|+||.|+...           .+.+..+++..+++..+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 6877776543 36899999999998542           356777889999999887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAR  175 (216)
Q Consensus       163 ~~~i~~l~~~l~~  175 (216)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd00154 Rab Rab family

Probab=99.97  E-value=4.2e-30  Score=181.67  Aligned_cols=158  Identities=57%  Similarity=0.986  Sum_probs=142.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888887789999999999988888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |.+++++++.+..|+..+........|+++|+||+|+.. ......++.+.+....++.++++|++++.|++++|++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999999887656799999999999852 355667888888888889999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=7e-30  Score=182.77  Aligned_cols=161  Identities=38%  Similarity=0.681  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      ++|+++|.+|+|||||+++|.++.+...+.++.+.. +...+..++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999998877777776533 4566678888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |.+++++++.+..|...+.... ..+.|+++++||.|+.+ ......++...+++..+ ++++++||+++.|++++|.++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999988886543 34789999999999854 34556677777888877 789999999999999999999


Q ss_pred             HHHHH
Q 027985          174 AREIK  178 (216)
Q Consensus       174 ~~~~~  178 (216)
                      ...+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            87654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=6.8e-30  Score=190.05  Aligned_cols=163  Identities=29%  Similarity=0.448  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc-cccEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL   93 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   93 (216)
                      +||+++|.+|+|||||+++|+.+.+. ..+.++.+.+++...+.+++..+.+.|||++|++.  .....+++ .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888775 55666655466777788888888999999999872  23344566 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.++...++.++++||+++.|++++|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999998887654 34789999999999865 3456677778888888899999999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          173 IAREIKQRL  181 (216)
Q Consensus       173 l~~~~~~~~  181 (216)
                      |.+.+....
T Consensus       158 l~~~~~~~~  166 (221)
T cd04148         158 IVRQIRLRR  166 (221)
T ss_pred             HHHHHHhhh
Confidence            998886443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=3e-30  Score=184.17  Aligned_cols=160  Identities=38%  Similarity=0.596  Sum_probs=133.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccccccccccccEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   95 (216)
                      ||+|+|++|+|||||+++++...+...+.++.... +...+.+++..+.+.|||+||+.. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            58999999999999999999888876666665333 345567788888999999999885 3445667889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC-CHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQVFFS  172 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~  172 (216)
                      |++++.+++.+..|+..+....  ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++. |++++|+.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999999988887654  34799999999999854 35567788888898889999999999994 99999999


Q ss_pred             HHHHHH
Q 027985          173 IAREIK  178 (216)
Q Consensus       173 l~~~~~  178 (216)
                      |.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            987653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.4e-29  Score=185.70  Aligned_cols=161  Identities=32%  Similarity=0.507  Sum_probs=133.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|.+|+|||||+++|+...+...+.++.. +.....+.+.+..+.+.|||+||+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666553 4455567778877899999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.+....+..+....... ..++.++++||++|.|++++|++|.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888876553 4699999999999865444455544444433 4457899999999999999999999


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=3e-29  Score=178.55  Aligned_cols=161  Identities=40%  Similarity=0.659  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|++|+|||||+++++...+...+.++... .+...+.+++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999998887766666543 34455677878889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |+.++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...........+.+..+++++++||++++|++++|++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887753 34799999999999854 234566677778888889999999999999999999998


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T cd04139         159 REIR  162 (164)
T ss_pred             HHHH
Confidence            8765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=3e-29  Score=177.81  Aligned_cols=158  Identities=39%  Similarity=0.687  Sum_probs=137.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|++|+|||||+++|++..+...+.++.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666655 5555667777777899999999999888888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      .++++++..+..|+..+..... ...|+++|+||+|+.+ ......+.+..+....+.+++++|++++.|++++|++|.+
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            9999999999999988877654 5799999999999865 3556677888888888899999999999999999999987


Q ss_pred             H
Q 027985          176 E  176 (216)
Q Consensus       176 ~  176 (216)
                      .
T Consensus       159 ~  159 (160)
T cd00876         159 E  159 (160)
T ss_pred             h
Confidence            5

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=9.5e-29  Score=177.99  Aligned_cols=160  Identities=35%  Similarity=0.668  Sum_probs=132.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.|||++|++.+...+...++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            6899999999999999999999998877777765443 345677888889999999999998888888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+.+..           ..+...+.+.+++..+. .+++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999885 4777776543 368999999999985421           23445677777877774 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREI  177 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (216)
                      |.|++++|.+|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.1e-28  Score=179.53  Aligned_cols=161  Identities=34%  Similarity=0.585  Sum_probs=133.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+|+|++|+|||||+++|....+...+.++.... +...+.+++..+.+.+||++|++.+......+++.++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            589999999999999999999877776666665433 3445677777788999999999888777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------CCCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES---------KRAVPTAKGQELADEYGI-KFFETSAKTNF  164 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      |+++.++++.+. .|+..+..... ..|+++|+||+|+.+.         ...+..++.+.+++..+. .+|++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 58888876554 6999999999998432         234556778888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIK  178 (216)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (216)
                      |++++|+++.+.+.
T Consensus       160 ~v~~~f~~l~~~~~  173 (187)
T cd04129         160 GVDDVFEAATRAAL  173 (187)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998774

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.8e-28  Score=177.36  Aligned_cols=163  Identities=36%  Similarity=0.595  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+|+|.+|+|||||+++|++..+...+.++....+ ...+..++..+.+.+||+||++++...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888766666654333 455667777788999999999998888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |.++..+++.+..|+..+.... ..+.|+++|+||+|+.. ...+..++...+++..++.++++||++++|+.++|++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999988887654 34689999999999854 345566677778888888999999999999999999999


Q ss_pred             HHHHHH
Q 027985          175 REIKQR  180 (216)
Q Consensus       175 ~~~~~~  180 (216)
                      +.+...
T Consensus       160 ~~~~~~  165 (180)
T cd04137         160 EEIEKV  165 (180)
T ss_pred             HHHHHh
Confidence            887643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=3.3e-29  Score=179.11  Aligned_cols=154  Identities=21%  Similarity=0.382  Sum_probs=121.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+++|.+++|||||+++|....+.. +.|+.+.+..  .+...  .+.+.+||+||++.+...+..+++.+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999998776643 4566654443  33343  3789999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVE  167 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  167 (216)
                      |||++++.++..+..|+..+... ...+.|+++|+||+|+.+   .+..++++.+...     ..+.++++||++|+|++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            99999999999988887766543 234689999999999854   2455566655421     22468999999999999


Q ss_pred             HHHHHHHH
Q 027985          168 QVFFSIAR  175 (216)
Q Consensus       168 ~l~~~l~~  175 (216)
                      ++|+||.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2.9e-28  Score=174.72  Aligned_cols=158  Identities=35%  Similarity=0.670  Sum_probs=130.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|++|+|||||+++|++..+...+.++.. +.....+..++..+.+.+||+||++.+.......++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999988666666654 334455677788889999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHHHhCC-cEEEEecCCC
Q 027985           96 DVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDESKR----------AVPTAKGQELADEYGI-KFFETSAKTN  163 (216)
Q Consensus        96 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (216)
                      |.+++.++..... |+..+..... +.|+++|+||+|+.+...          .+..++...+....++ .++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999988887654 6666665543 799999999999865332          3456777888888887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAR  175 (216)
Q Consensus       164 ~~i~~l~~~l~~  175 (216)
                      +|+.++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=9.1e-29  Score=177.12  Aligned_cols=156  Identities=20%  Similarity=0.388  Sum_probs=125.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|.+++|||||+++|.+..+.. +.++.+.+.  ..+...+  +.+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886643 566655444  3444544  789999999999888889899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC------CcEEEEecCCCCCHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG------IKFFETSAKTNFNVEQV  169 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l  169 (216)
                      +++++++..+..|+..+.... ..+.|+++|+||+|+.+   .+..++++.++...+      +.++++||++|.|++++
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            999999999999988886532 23589999999999853   355666666654222      26789999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          170 FFSIAREIKQR  180 (216)
Q Consensus       170 ~~~l~~~~~~~  180 (216)
                      |+||.+.+.+.
T Consensus       153 f~~l~~~~~~~  163 (169)
T cd04158         153 LDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHhhc
Confidence            99998876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.2e-28  Score=178.07  Aligned_cols=159  Identities=19%  Similarity=0.360  Sum_probs=122.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..+||+++|.++||||||+++|....+. .+.|+.+.+.  ..+...+  +.+.|||+||++.+..+|..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            44589999999999999999999877664 3566666443  3445544  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-----CcEEEEecCCCCCH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-----IKFFETSAKTNFNV  166 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  166 (216)
                      +|||+++++++..+..++..+... ...+.|++||+||+|+.+.   ...+++........     +.++++||++|+|+
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv  166 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence            999999999999888777666432 2246899999999998542   23333333222111     23568999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~~~~  179 (216)
                      +++|+||.+.+..
T Consensus       167 ~e~~~~l~~~~~~  179 (181)
T PLN00223        167 YEGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888764

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=1.9e-28  Score=177.59  Aligned_cols=164  Identities=21%  Similarity=0.371  Sum_probs=127.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .+||+++|.+|+|||||++++....+... .++.+.+.....+.. ++..+.+.+||+||++.+..+|..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998877544 565555554444443 3345799999999999888889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--h----CCcEEEEecCCCCCH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE--Y----GIKFFETSAKTNFNV  166 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~----~~~~~~~Sa~~~~~i  166 (216)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+   ....+++..+...  .    ++.++++||++|+|+
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            999999999998888887776543 34689999999999853   2334444444321  1    246889999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027985          167 EQVFFSIAREIKQRLV  182 (216)
Q Consensus       167 ~~l~~~l~~~~~~~~~  182 (216)
                      +++|++|.+.+.+...
T Consensus       159 ~~l~~~l~~~l~~~~~  174 (183)
T cd04152         159 QEGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988864443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.4e-30  Score=170.25  Aligned_cols=165  Identities=50%  Similarity=0.930  Sum_probs=150.9

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEEC
Q 027985           19 LLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (216)
Q Consensus        19 ~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (216)
                      +++|.+++|||.|+-++...-| ......++++++....+..++.++++++|||.|++++.+....+++++|.++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            3789999999999988877666 556788899999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985           98 TDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus        98 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      .+..+|++.+.|+..+..+..+.+.+.+++||+|+.+ ++.+..++.+.+++..++++.++||++|.|++..|-.|.+.+
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999999999999888888999999999965 567888999999999999999999999999999999999988


Q ss_pred             HHHHhhh
Q 027985          178 KQRLVES  184 (216)
Q Consensus       178 ~~~~~~~  184 (216)
                      .+..-..
T Consensus       160 ~k~~~~~  166 (192)
T KOG0083|consen  160 KKLKMGA  166 (192)
T ss_pred             HHhccCC
Confidence            7655443

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=4.3e-29  Score=179.73  Aligned_cols=156  Identities=19%  Similarity=0.380  Sum_probs=120.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+++|.+|+|||||+++|....+. .+.|+.+.++.  .+...+  +.+.+||+||++.+..++..+++++|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKN--ISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4599999999999999999999766663 35566654443  344443  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  167 (216)
                      |||++++++++.+.+|+..+... ...+.|++||+||.|+.+.   ...+++.....     ...+.++++||++|+|++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA---MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC---CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            99999999999998888777543 2346899999999998542   22233222221     112357789999999999


Q ss_pred             HHHHHHHHHH
Q 027985          168 QVFFSIAREI  177 (216)
Q Consensus       168 ~l~~~l~~~~  177 (216)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2e-28  Score=176.08  Aligned_cols=157  Identities=21%  Similarity=0.380  Sum_probs=123.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..+..++|+++|++|+|||||+++|.+..+. .+.++.+  +....+.+++  +.+.+||+||++.+...+..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            3456689999999999999999999987553 3445544  3344555654  789999999999888888889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNF  164 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  164 (216)
                      +++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.   ...++++.+.+     ..++.++++||++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            99999999999999988888777542 2357899999999998542   24445555443     234689999999999


Q ss_pred             CHHHHHHHHHH
Q 027985          165 NVEQVFFSIAR  175 (216)
Q Consensus       165 ~i~~l~~~l~~  175 (216)
                      |++++|++|.+
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=2.8e-28  Score=172.84  Aligned_cols=152  Identities=20%  Similarity=0.405  Sum_probs=117.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+++|||||++++..+.+. .+.|+.+.+.  ..+....  +.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 3566665443  3344443  78999999999999889999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHH-HHHHHH----HhCCcEEEEecCCCCCHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAK-GQELAD----EYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~----~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      |++++.++..+.+|+..+... .....|+++++||+|+.+.   ...++ ...+..    ...+.++++||++|+|++++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~  152 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG  152 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence            999999999998887776432 2235899999999998542   22222 222211    11245789999999999999


Q ss_pred             HHHHHH
Q 027985          170 FFSIAR  175 (216)
Q Consensus       170 ~~~l~~  175 (216)
                      |++|.+
T Consensus       153 ~~~l~~  158 (159)
T cd04150         153 LDWLSN  158 (159)
T ss_pred             HHHHhc
Confidence            999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=2.8e-29  Score=178.81  Aligned_cols=153  Identities=20%  Similarity=0.337  Sum_probs=123.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      .|+++|.+|+|||||+++|.+..+...+.|+.+...  ..  ++...+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999888777777776432  23  33344799999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH----HHHHHHHHHhCCcEEEEecCC------CCCH
Q 027985           97 VTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT----AKGQELADEYGIKFFETSAKT------NFNV  166 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i  166 (216)
                      .+++.++..++.|+..+.... .+.|+++|+||+|+.... .+..    ..+..++++.++.++++||++      ++|+
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v  154 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV  154 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence            999999999999888876543 479999999999985422 1111    123455556678899999998      9999


Q ss_pred             HHHHHHHHH
Q 027985          167 EQVFFSIAR  175 (216)
Q Consensus       167 ~~l~~~l~~  175 (216)
                      +++|+.++.
T Consensus       155 ~~~~~~~~~  163 (164)
T cd04162         155 KDLLSQLIN  163 (164)
T ss_pred             HHHHHHHhc
Confidence            999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=6.6e-28  Score=174.88  Aligned_cols=163  Identities=40%  Similarity=0.678  Sum_probs=149.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ..+|+++|.+|+|||+|..+|....|...+.|+.. +.+...+.+++..+.+.|+||+|++++..+...+++.++++++|
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            57999999999999999999999999999999987 67778888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |++++..+|+.+..++..+.. +....+|+++|+||+|+.. .+.+..++++.++..+++.++++||+...+++++|..|
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999998844 3345689999999999965 47899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          174 AREIKQ  179 (216)
Q Consensus       174 ~~~~~~  179 (216)
                      ...+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998876

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=2.1e-27  Score=176.42  Aligned_cols=166  Identities=31%  Similarity=0.613  Sum_probs=142.6

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......+||+++|++|+|||||+++++.+.+...+.++.+.++....+..+++.+.+.+||++|++.+..++..+++.++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            45566799999999999999999999888888888888888887777777888899999999999988888888999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+  .....+. ..+.+..++.++++|+++|.|++++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~  159 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKP  159 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999998887654 4689999999999854  2233333 3566777889999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          170 FFSIAREIKQ  179 (216)
Q Consensus       170 ~~~l~~~~~~  179 (216)
                      |.+|.+.+..
T Consensus       160 f~~ia~~l~~  169 (215)
T PTZ00132        160 FLWLARRLTN  169 (215)
T ss_pred             HHHHHHHHhh
Confidence            9999988864

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1.2e-27  Score=170.92  Aligned_cols=160  Identities=29%  Similarity=0.445  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||+++|.++.+...+.++.  ........+++..+.+.+||+||.+.+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988865533322  122233445566689999999999877777777789999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHH
Q 027985           96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAV-PTAKGQELADEYG--IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |++++.+++.+. .|+..+..... +.|+++|+||+|+.+..... ..+.+..+.....  ..++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999986 57676665543 78999999999996533211 1233444444443  3799999999999999999


Q ss_pred             HHHHHHH
Q 027985          172 SIAREIK  178 (216)
Q Consensus       172 ~l~~~~~  178 (216)
                      .+...+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9887764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=4.4e-30  Score=176.07  Aligned_cols=172  Identities=35%  Similarity=0.633  Sum_probs=159.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +-+..+|++|+|..++||||+|+++|.+.|...+..+.+.++....+.+.++.+.+.+||++|+++++.+...+++.+.+
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa   95 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA   95 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence            45568999999999999999999999999999999999999988888888888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      .++||+-+|.++|+....|++.+..... .+|.++|-||+|+.+ ...+...+++.+++.+++.++-+|++...|+..+|
T Consensus        96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF  173 (246)
T KOG4252|consen   96 SVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF  173 (246)
T ss_pred             eEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence            9999999999999999999999988765 699999999999976 56788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 027985          171 FSIAREIKQRLVES  184 (216)
Q Consensus       171 ~~l~~~~~~~~~~~  184 (216)
                      .+|++.+.+...++
T Consensus       174 ~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  174 AYLAEKLTQQKKQS  187 (246)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877763

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=9.3e-28  Score=173.69  Aligned_cols=157  Identities=22%  Similarity=0.396  Sum_probs=120.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|++++|||||++++..+.+.. +.|+.+.++  ..+...+  +.+.+||+||++.+..++..+++.+|++|+|
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            5899999999999999999998776654 456655443  3444444  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~  168 (216)
                      +|+++++++..+..++..+... .....|++||+||.|+.+   ....+++......     ..+.++++||++|+|+++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN---AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC---CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            9999999999988777766432 223589999999999854   2222232222111     113467899999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          169 VFFSIAREIKQ  179 (216)
Q Consensus       169 l~~~l~~~~~~  179 (216)
                      +|++|.+.+.+
T Consensus       169 ~~~~l~~~i~~  179 (182)
T PTZ00133        169 GLDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHHH
Confidence            99999887764

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=2.3e-28  Score=173.79  Aligned_cols=152  Identities=18%  Similarity=0.373  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +|+++|.+|+|||||+++|.+... ...+.++.+...  ..+...+  +.+.+||+||++.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGN--LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECC--EEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 445566665433  2333333  78999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  167 (216)
                      |++++.++..+..|+..+....   ..+.|+++|+||+|+.+..   ..++......     ...+.++++||++|+|++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999999988888877775432   2478999999999985422   2222222211     112468999999999999


Q ss_pred             HHHHHHHH
Q 027985          168 QVFFSIAR  175 (216)
Q Consensus       168 ~l~~~l~~  175 (216)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=4.1e-28  Score=172.33  Aligned_cols=165  Identities=36%  Similarity=0.639  Sum_probs=147.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ...+|++|+|...+|||+|+..+..+.|+..+.|+.. +-+...+.++ +..+.+.+|||+|+++|+.++...+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999997 6677778885 9999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEE
Q 027985           92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFET  158 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~  158 (216)
                      ++||++.++++++++. .|+.++..++ ++.|+|+|++|.|+.++           ...+..++...+++.+| ..|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            9999999999999975 6888888776 47999999999999743           24578899999999999 589999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      ||++..|++++|+..+.....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhc
Confidence            999999999999998877753

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.1e-26  Score=166.79  Aligned_cols=145  Identities=39%  Similarity=0.681  Sum_probs=127.4

Q ss_pred             CCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 027985           38 DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA  117 (216)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~  117 (216)
                      ..|.+.+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++++++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35677888999888888888899989999999999999999999999999999999999999999999999999887765


Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          118 ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       118 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      ....|+++|+||+|+.+ ...+..+++..++...++.++++||++|+|++++|++|.+.+.+....
T Consensus        83 ~~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            55789999999999964 345677888888888888999999999999999999999998764433

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=6.3e-27  Score=170.94  Aligned_cols=148  Identities=21%  Similarity=0.394  Sum_probs=124.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-----CeEEEEEEEeCCCccccccccccccccccE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +||+++|..++|||||+++|++..+...+.++.+.++....+.++     +..+.+.|||++|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877776666663     456899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCCCCHH----HHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA-------------------ADNVNKILVGNKADMDESKRAVPTA----KGQEL  147 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~  147 (216)
                      +|+|||++++.+++.+..|+..+....                   ..+.|+++|+||.|+.+. +.+..+    ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence            999999999999999999999986642                   246899999999999652 233332    24567


Q ss_pred             HHHhCCcEEEEecCCCC
Q 027985          148 ADEYGIKFFETSAKTNF  164 (216)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~  164 (216)
                      +++.+++.++.++.++.
T Consensus       160 a~~~~~~~i~~~c~~~~  176 (202)
T cd04102         160 AEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HHhcCCceEEEecCCcc
Confidence            88899999999988764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=5.2e-27  Score=168.78  Aligned_cols=154  Identities=23%  Similarity=0.329  Sum_probs=119.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+++|.+|+|||||+++++...+.. ..++.+.++  ..+..++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999998877754 355554333  3445554  789999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHH----HHhCCcEEEEecCCCCCHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKG-QELA----DEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~  167 (216)
                      |+|+++++++.....++..+.... ..+.|+++++||+|+.+   ....+++ +.+.    +..++.++++||++|+|++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~---~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~  165 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG---AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP  165 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC---CCCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence            999999998888887777664432 24689999999999854   2233332 2221    2234578999999999999


Q ss_pred             HHHHHHHH
Q 027985          168 QVFFSIAR  175 (216)
Q Consensus       168 ~l~~~l~~  175 (216)
                      ++|++|.+
T Consensus       166 e~~~~l~~  173 (174)
T cd04153         166 EGLDWIAS  173 (174)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=2.4e-27  Score=168.27  Aligned_cols=152  Identities=26%  Similarity=0.461  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      +|+++|.+|+|||||+++|.+..+... .++.+.+.  ..+... ..+.+.+||+||+..+...+..+++.+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999998887543 45544333  334443 33789999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH------HHhCCcEEEEecCCCCCHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELA------DEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      +.++.++..+..|+..+.... ..+.|+++|+||+|+.+.   ...+++....      ...++.++++||++|+|++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  153 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA  153 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence            999999998888877775432 247899999999998531   2223332221      112346899999999999999


Q ss_pred             HHHHHH
Q 027985          170 FFSIAR  175 (216)
Q Consensus       170 ~~~l~~  175 (216)
                      |++|.+
T Consensus       154 ~~~i~~  159 (160)
T cd04156         154 FRKLAS  159 (160)
T ss_pred             HHHHhc
Confidence            999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=3.2e-27  Score=168.77  Aligned_cols=154  Identities=21%  Similarity=0.342  Sum_probs=118.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      +|+++|.+++|||||+++|.+. +...+.++.+..  ...+..++  +.+.+||+||+..+..++..+++.+|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 555666766543  34555554  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHHhC--CcEEEEecCCC------C
Q 027985           97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTA---KGQELADEYG--IKFFETSAKTN------F  164 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~------~  164 (216)
                      ++++.+++.+..|+..+.... ..+.|+++|+||.|+.+........   .+..+++..+  +.++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999999988876542 2478999999999985532111111   1122232222  46788999998      8


Q ss_pred             CHHHHHHHHHH
Q 027985          165 NVEQVFFSIAR  175 (216)
Q Consensus       165 ~i~~l~~~l~~  175 (216)
                      |+++.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=1e-26  Score=169.56  Aligned_cols=155  Identities=22%  Similarity=0.347  Sum_probs=123.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...+|+++|++|+|||||++++.+..+. .+.++.+  .....+.+++  +.+.+||+||+..+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~--~~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH--PTSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999987764 3444443  2334556665  689999999998888888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----------------hCCcEE
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE----------------YGIKFF  156 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~~~  156 (216)
                      |+|+++.+++.....|+..+.... ..+.|+++++||+|+..   .+..++++.+...                ..+.++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            999999988888888877775533 24689999999999853   4455666665542                124689


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      +|||++|+|++++|+||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=3.1e-26  Score=164.61  Aligned_cols=158  Identities=29%  Similarity=0.501  Sum_probs=127.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+++|..+||||||++++....... ..||.+  +....+.+.+  +.+.+||.+|+..+...|..++..+|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            3677999999999999999999998765433 555555  5556677776  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH------HhCCcEEEEecCCCC
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD------EYGIKFFETSAKTNF  164 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~  164 (216)
                      |||+|.++.+.+......+..+... ...+.|++|++||.|+.+   ....+++.....      ...+.++.|||.+|+
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~---~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~  162 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD---AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE  162 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT---SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC---cchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence            9999999999888888877776553 234789999999999854   344455554432      123568999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREI  177 (216)
Q Consensus       165 ~i~~l~~~l~~~~  177 (216)
                      |+.+.++||.+.+
T Consensus       163 Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  163 GVDEGLEWLIEQI  175 (175)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=3e-27  Score=167.46  Aligned_cols=151  Identities=24%  Similarity=0.383  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|.+++|||||+++|....+.. ..++.+.+.  ..+...+  +.+.+||+||++.+..++..+++.+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776643 345544333  3344443  789999999999988889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      ++++.++.....++..+.. ....+.|+++|+||+|+.+..   ...++.....     ..+..++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  152 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence            9998888777666654433 222468999999999985421   2222221111     112469999999999999999


Q ss_pred             HHHHH
Q 027985          171 FSIAR  175 (216)
Q Consensus       171 ~~l~~  175 (216)
                      ++|.+
T Consensus       153 ~~l~~  157 (158)
T cd04151         153 DWLVN  157 (158)
T ss_pred             HHHhc
Confidence            99864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.2e-26  Score=165.77  Aligned_cols=152  Identities=23%  Similarity=0.406  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +|+|+|++|+|||||+++|.....      ...+.++.+.+  ...+.+++  ..+.+||+||++.+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLN--IGTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      22334444433  34455654  689999999999998888899999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------hCCcEEEEecCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-------YGIKFFETSAKT  162 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~  162 (216)
                      +++|+|+.+++++.....|+..+.... ..+.|+++|+||+|+.+   ....+++..+...       .++.++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD---ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc---CCCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            999999999888888888877765532 34789999999999854   2334444444332       235799999999


Q ss_pred             CCCHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAR  175 (216)
Q Consensus       163 ~~~i~~l~~~l~~  175 (216)
                      |+|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=1.7e-26  Score=156.21  Aligned_cols=167  Identities=20%  Similarity=0.361  Sum_probs=133.0

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      +.++..++|+++|..||||||++++|.+... ....|+.+  +...++.+++  +.++|||.+|+......|..+|..+|
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence            3345589999999999999999999998884 33345544  6777777876  79999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                      ++|+|+|..|+..++.....+..+.. ..-.+.|+++++||.|+...-....   ...+..+++...++++.||+.+|++
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            99999999999888887766655532 2223689999999999963222111   1234455567779999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQRL  181 (216)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (216)
                      +.+-+.||.+.+.++.
T Consensus       166 l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMSRL  181 (185)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998743

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=4.1e-25  Score=168.97  Aligned_cols=143  Identities=24%  Similarity=0.475  Sum_probs=122.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-------------eEEEEEEEeCCCcccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-------------KRIKLQIWDTAGQERF   77 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~   77 (216)
                      .....+||+|+|..|+|||||+++|++..+...+.++.+.++....+.+++             ..+.+.|||++|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            456789999999999999999999999999888888988877777676642             4588999999999999


Q ss_pred             ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--CC---CC
Q 027985           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA------------DNVNKILVGNKADMDESK--RA---VP  140 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~D~~~~~--~~---~~  140 (216)
                      ..++..++++++++|+|||+++..+++.+..|+..+.....            ..+|++||+||+|+.+..  +.   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999976531            258999999999996532  12   35


Q ss_pred             HHHHHHHHHHhCC
Q 027985          141 TAKGQELADEYGI  153 (216)
Q Consensus       141 ~~~~~~~~~~~~~  153 (216)
                      .++++.+++++++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7899999999884

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=3.5e-26  Score=161.96  Aligned_cols=151  Identities=22%  Similarity=0.407  Sum_probs=118.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|.+|+|||||++++++... ....++.+  .....+.+.+  +.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIG--FNVETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcC--cceEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998874 33444444  3334455554  689999999999988889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +++++++..+..|+..+.... ..+.|+++|+||+|+....   ..++.......     ..+.++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  152 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence            999999999988887775532 3478999999999985422   23333333322     23579999999999999999


Q ss_pred             HHHHH
Q 027985          171 FSIAR  175 (216)
Q Consensus       171 ~~l~~  175 (216)
                      ++|..
T Consensus       153 ~~l~~  157 (158)
T cd00878         153 DWLLQ  157 (158)
T ss_pred             HHHhh
Confidence            99875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=7.2e-26  Score=164.17  Aligned_cols=156  Identities=19%  Similarity=0.273  Sum_probs=120.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+++|.+|+|||||+++|.+..+.. +.++.+.  ....+.+++  +.+.+||+||+..+...+..+++.+|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            345899999999999999999999876643 3444332  333445554  68999999999988888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH------------hCCcEEEEe
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE------------YGIKFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~S  159 (216)
                      +|+|++++.++.....++..+... ...+.|+++|+||+|+..   .+..+++.....-            ....+++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S  166 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS  166 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence            999999999998888877766543 224689999999999853   3444444433210            124699999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIARE  176 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~  176 (216)
                      |++|+|++++++||...
T Consensus       167 a~~~~g~~~~~~wl~~~  183 (184)
T smart00178      167 VVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             cccCCChHHHHHHHHhh
Confidence            99999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=8e-26  Score=176.54  Aligned_cols=164  Identities=15%  Similarity=0.143  Sum_probs=125.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----ccc---ccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRG   87 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~   87 (216)
                      .-.|.|+|.|++|||||+++|++........+.+|.......+.+.+. ..+.+||+||..+-    ..+   +...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            356899999999999999999987665555566677777777777432 47999999996421    122   2334567


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                      ++++|+|+|+++.++++.+..|...+..+..  .+.|+++|+||+|+.+. .....+..+.+....+..++++||++++|
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            9999999999987789999999988877643  36899999999998642 22233344555555668899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQR  180 (216)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (216)
                      +++++++|.+.+.++
T Consensus       316 I~eL~~~L~~~l~~~  330 (335)
T PRK12299        316 LDELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887653

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=8.2e-26  Score=161.60  Aligned_cols=155  Identities=18%  Similarity=0.180  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc---------ccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---------TTAYYRG   87 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~~   87 (216)
                      +|+++|.+|+|||||+++|++..+.....+..+.+.....+..++  +.+.||||||+......         .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            789999999999999999999877544444444445444444443  68999999997421110         0011123


Q ss_pred             ccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           88 AMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                      .|++++|+|+++..+  ++....|+..+.... .+.|+++|+||+|+.+.. .+.  ..+.+.+..+..++++||++|.|
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~-~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFE-DLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchh-hHH--HHHHhhhhccCceEEEEecccCC
Confidence            689999999988654  356667777776544 368999999999985421 111  24455555567899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREI  177 (216)
Q Consensus       166 i~~l~~~l~~~~  177 (216)
                      ++++|++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.3e-25  Score=160.84  Aligned_cols=157  Identities=18%  Similarity=0.184  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   89 (216)
                      .|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||...    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999976653333333344444444445442 4899999999642    11222333   34599


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCC
Q 027985           90 GILLVYDVTDE-SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFN  165 (216)
Q Consensus        90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  165 (216)
                      ++++|+|++++ .+++.+..|++.+.....  ...|+++|+||+|+.+.  ....+....+.... +..++++||+++.|
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            99999999998 788999899888876542  36899999999998542  22234455555553 67899999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          166 VEQVFFSIARE  176 (216)
Q Consensus       166 i~~l~~~l~~~  176 (216)
                      ++++|++|.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=1.2e-25  Score=165.64  Aligned_cols=158  Identities=21%  Similarity=0.173  Sum_probs=116.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------ccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITT   82 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~   82 (216)
                      ..+.++|+|+|.+|+|||||++++++..+.....+..+.+.....+.+++. ..+.+||+||....         ... .
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-L  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-H
Confidence            466789999999999999999999988754443444444555555555553 37999999997321         111 1


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+...      ........+..++++||++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~~~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------LEERLEAGRPDAVFISAKT  189 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------HHHHhhcCCCceEEEEcCC
Confidence            2356899999999999988888877777777665545689999999999854221      1133444557899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREI  177 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (216)
                      +.|+++++++|.+.+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999987653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.1e-25  Score=159.04  Aligned_cols=152  Identities=22%  Similarity=0.456  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      .|+++|++|+|||||+++|.+..+...+.++.+.+..  .+..++  +.+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3789999999999999999999988888887765544  344444  789999999999988889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHhCCcEEEEecCCCCCHHHHH
Q 027985           97 VTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +++..++.....|+..+... ...+.|+++|+||+|+.+..   .........     ....+.++++|++++.|+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL  153 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence            99988888887777666442 22468999999999985421   112211111     1123578999999999999999


Q ss_pred             HHHHH
Q 027985          171 FSIAR  175 (216)
Q Consensus       171 ~~l~~  175 (216)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04159         154 DWLIK  158 (159)
T ss_pred             HHHhh
Confidence            99865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=1.2e-24  Score=153.54  Aligned_cols=158  Identities=35%  Similarity=0.492  Sum_probs=125.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ++||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+...++.++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999888778888888888777777877667899999999988888888888899999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           95 YDVTDE-SSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        95 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|.... .++.... .|...+......+.|+++++||.|+....  ........+.......++++||.++.|+.++|++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            998776 5555554 56655655544378999999999985422  3333444444444568999999999999999998


Q ss_pred             HH
Q 027985          173 IA  174 (216)
Q Consensus       173 l~  174 (216)
                      |.
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            74

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=9.1e-25  Score=156.96  Aligned_cols=157  Identities=22%  Similarity=0.402  Sum_probs=118.3

Q ss_pred             cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      +.......++|+++|++|+|||||++++.+..+.. ..++.+  +....+..++  ..+.+||+||+..+...+..+++.
T Consensus         7 ~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~   81 (173)
T cd04155           7 KLRKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFEN   81 (173)
T ss_pred             HhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcC
Confidence            33445558999999999999999999999876543 344444  3334555655  689999999998888888888999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--------CcEEEE
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--------IKFFET  158 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  158 (216)
                      +|++++|+|+.+..++.....++..+... ...++|+++++||+|+.+.   ...   +.+.+..+        ..++++
T Consensus        82 ~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~---~~i~~~l~~~~~~~~~~~~~~~  155 (173)
T cd04155          82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA---APA---EEIAEALNLHDLRDRTWHIQAC  155 (173)
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC---CCH---HHHHHHcCCcccCCCeEEEEEe
Confidence            99999999999988888877776665433 2346899999999998542   112   22233333        247899


Q ss_pred             ecCCCCCHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~  175 (216)
                      ||++|+|++++|+||.+
T Consensus       156 Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         156 SAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=3.7e-25  Score=159.82  Aligned_cols=154  Identities=27%  Similarity=0.374  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccc------ceeeEEEEEE--EEE---CCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS-------FTTSFIT------TIGIDFKIRT--IEL---DGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|.+++|||||+++|++..       +...+.+      ..+.+.....  +.+   ++..+.+.||||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998642       1111111      1112222222  222   5566889999999999998


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC---cE
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI---KF  155 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~  155 (216)
                      ..+..+++.+|++|+|+|+++..+......|....    ..++|+++|+||+|+.+.   ......+.+.+..++   .+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~  154 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSA---DPERVKQQIEDVLGLDPSEA  154 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcC---CHHHHHHHHHHHhCCCcccE
Confidence            88888999999999999999876666665554322    136899999999998541   122334556666665   48


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 027985          156 FETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      +++||++|+|++++|++|.+.+
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         155 ILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEeeccCCCCHHHHHHHHHhhC
Confidence            9999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.5e-24  Score=154.34  Aligned_cols=153  Identities=19%  Similarity=0.195  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +.|+|+|.+++|||||+++|++..   +.....++.+.+.....+.+.+ ...+.+|||||++.+.......++.+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   3333344445455445555542 258999999999888766667788999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHH---hCCcEEEEecCCCCC
Q 027985           93 LVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELADE---YGIKFFETSAKTNFN  165 (216)
Q Consensus        93 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  165 (216)
                      +|+|+++   +++.+.+    ..+... . ..|+++|+||+|+.+... .....+...+.+.   .+..++++||++++|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999986   3333322    222222 1 248999999999854211 1112333344443   357899999999999


Q ss_pred             HHHHHHHHHH
Q 027985          166 VEQVFFSIAR  175 (216)
Q Consensus       166 i~~l~~~l~~  175 (216)
                      ++++++.+..
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=2e-24  Score=169.97  Aligned_cols=159  Identities=23%  Similarity=0.235  Sum_probs=117.5

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRT   79 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~   79 (216)
                      .+..+..++|+++|.+|+|||||+|+|++........++.|.++....+.+++. ..+.||||+|...         +..
T Consensus       183 ~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~  261 (351)
T TIGR03156       183 RRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA  261 (351)
T ss_pred             hhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH
Confidence            344456799999999999999999999998765555556666777777777443 4899999999721         222


Q ss_pred             ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      . ...+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+.      ....... .....++++|
T Consensus       262 t-le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~~~~-~~~~~~i~iS  333 (351)
T TIGR03156       262 T-LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIERLE-EGYPEAVFVS  333 (351)
T ss_pred             H-HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHHHHH-hCCCCEEEEE
Confidence            1 124778999999999999888877777666665544446899999999998541      1111111 1224689999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIARE  176 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~  176 (216)
                      |++|.|+++++++|.+.
T Consensus       334 Aktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       334 AKTGEGLDLLLEAIAER  350 (351)
T ss_pred             ccCCCCHHHHHHHHHhh
Confidence            99999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=2.7e-24  Score=167.86  Aligned_cols=160  Identities=17%  Similarity=0.174  Sum_probs=120.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----ccccc---cccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TITTA---YYRG   87 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~   87 (216)
                      .-.|+|+|.|++|||||+++|++........+.+|.......+.+++. ..+.|||+||..+..    .+...   .+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~-~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG-RSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc-eEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            457899999999999999999987654444555566666667777652 579999999964321    22223   3456


Q ss_pred             ccEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985           88 AMGILLVYDVTDE---SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        88 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ++++++|+|+++.   .+++.+..|.+.+..+..  .+.|+++|+||+|+.+.  ....+..+.+.+..+..++++||++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAkt  313 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISALT  313 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEccC
Confidence            9999999999876   678888888887766532  36899999999998652  2233445566666678899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREI  177 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (216)
                      ++|+++++++|.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.2e-23  Score=155.28  Aligned_cols=169  Identities=40%  Similarity=0.580  Sum_probs=135.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|++|+|||||+++|....+...+.++.+..+........+..+.+.+||++|++++..++..+++.++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            49999999999999999999999999999998887777777666665568999999999999999999999999999999


Q ss_pred             EECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHHh---CCcEEEEe
Q 027985           95 YDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-----------AVPTAKGQELADEY---GIKFFETS  159 (216)
Q Consensus        95 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~S  159 (216)
                      +|..+ ..+.+....|+..+........|+++|+||+|+.....           ....+.........   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99998 55556667788888777655789999999999965431           22222222222222   23489999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHHhh
Q 027985          160 AK--TNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       160 a~--~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      ++  ++.++.++|..+...+.+....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            99  9999999999988888755433

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=2.6e-24  Score=153.78  Aligned_cols=158  Identities=20%  Similarity=0.151  Sum_probs=110.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .|+|+|.+|+|||||+++|+...+.....++.+.+.....+..+ +....+.+|||||+..+..++...++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999888766555555555544445443 12368999999999888888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH----H--hCCcEEEEecCCCCCHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD----E--YGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~--~~~~~~~~Sa~~~~~i~~l  169 (216)
                      |+++....... ..+..+..   .+.|+++|+||+|+.+............+..    .  ..+.++++|+++|+|++++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99874322221 12222322   3689999999999854221111111221111    1  1257999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          170 FFSIAREIK  178 (216)
Q Consensus       170 ~~~l~~~~~  178 (216)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=2.7e-25  Score=147.72  Aligned_cols=161  Identities=22%  Similarity=0.406  Sum_probs=127.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+.+.++|..+||||||+|....+.+.....|+.+.+  +..+..  +.+.+.+||.||++.+..+|..|++.+++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tk--gnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEecc--CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            35789999999999999999999999989899998844  444444  44899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--CCcEEEEecCCCCCHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~  170 (216)
                      |+|+.+++.+...+..+..+.... -.++|+++.+||.|++++.......+...+....  .+.+|.+|+++..||+.+.
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~  174 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL  174 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence            999999999888887776665543 3579999999999986633321111111111111  1568999999999999999


Q ss_pred             HHHHHHHH
Q 027985          171 FSIAREIK  178 (216)
Q Consensus       171 ~~l~~~~~  178 (216)
                      .||+++-.
T Consensus       175 ~Wli~hsk  182 (186)
T KOG0075|consen  175 DWLIEHSK  182 (186)
T ss_pred             HHHHHHhh
Confidence            99998754

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=1.2e-24  Score=151.00  Aligned_cols=148  Identities=20%  Similarity=0.258  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG   87 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~   87 (216)
                      ++|+++|.|++|||||+|+|++........|+.|.+.....+.+.+  ..+.++|+||......      ....++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999998778889999998888888888  5899999999543322      122233  57


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      .|++|+|+|++..+.--   .....+..   .++|+++|+||+|......  ...+...+.+.++++++++||++++|++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g--~~id~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKG--IEIDAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTT--EEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcC--CEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            99999999997643222   22222333   3799999999999854222  2335677888899999999999999999


Q ss_pred             HHHHHH
Q 027985          168 QVFFSI  173 (216)
Q Consensus       168 ~l~~~l  173 (216)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.2e-23  Score=148.79  Aligned_cols=148  Identities=18%  Similarity=0.218  Sum_probs=111.6

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--ccccEE
Q 027985           20 LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RGAMGI   91 (216)
Q Consensus        20 v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~~   91 (216)
                      |+|.+|+|||||++++++........++.+.+.....+.+++  ..+.+|||||+..+..      ++..++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998876555666666667667777776  5799999999876553      234445  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ++|+|+.+++...   .++..+..   .+.|+++|+||+|+.+.. .+ ....+.+.+..+..++++|++++.|++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKR-GI-KIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccc-cc-hhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            9999998754432   33333333   268999999999996532 22 2234567777789999999999999999999


Q ss_pred             HHHHHH
Q 027985          172 SIAREI  177 (216)
Q Consensus       172 ~l~~~~  177 (216)
                      +|.+.+
T Consensus       151 ~l~~~~  156 (158)
T cd01879         151 AIAELA  156 (158)
T ss_pred             HHHHHh
Confidence            988763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.2e-24  Score=148.29  Aligned_cols=160  Identities=20%  Similarity=0.389  Sum_probs=128.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+++|-.++||||++.+|....+... .||.+  +.+..+++.+  +.+.+||.+|++.++.+|..++++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence            34568999999999999999999976666544 77766  5555666765  8999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCC
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFN  165 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  165 (216)
                      |||+|.+|.+.+..+++.+..+..... .+.|+++.+||.|++++..   ..++.....     .....+..++|.+|+|
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            999999999999999887777765543 5789999999999976433   333322222     1235688889999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~~~~  179 (216)
                      +.+.++||.+.+..
T Consensus       166 L~egl~wl~~~~~~  179 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988753

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=3.3e-24  Score=156.83  Aligned_cols=150  Identities=19%  Similarity=0.218  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD--DSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      -+|+++|.+++|||||+++|+.  ..+....            ..+.+.+.......+....+.+.+||+||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999986  4443322            1122233333333333344789999999999998888


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------HhCCc
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-------EYGIK  154 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~  154 (216)
                      ..+++.+|++++|+|+++.. ......++..+..   .+.|+++|+||+|+.+.......+++..+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998732 2233333333332   3689999999999864222222334444442       23578


Q ss_pred             EEEEecCCCCCHHHH
Q 027985          155 FFETSAKTNFNVEQV  169 (216)
Q Consensus       155 ~~~~Sa~~~~~i~~l  169 (216)
                      ++++||++|.|++++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887554

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=3.4e-24  Score=149.13  Aligned_cols=134  Identities=22%  Similarity=0.270  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc-----ccccccccccccccEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI   91 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   91 (216)
                      ||+++|++|+|||||+++|.+..+.  +.++.+       +.+.     -.+||+||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            7999999999999999999987652  222222       1221     2689999973     2333322 47899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF  170 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~  170 (216)
                      ++|||++++.++.. ..|...+      ..|+++|+||+|+.+  .....+..+.+++..+. .++++||++|.|++++|
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999887654 2343321      249999999999854  23455667777777775 79999999999999999


Q ss_pred             HHHH
Q 027985          171 FSIA  174 (216)
Q Consensus       171 ~~l~  174 (216)
                      ++|.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=3e-23  Score=145.12  Aligned_cols=154  Identities=52%  Similarity=0.863  Sum_probs=119.3

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC
Q 027985           20 LIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        20 v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (216)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44445554 5666666666666689999999998887777788889999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           99 DESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        99 ~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ++.+...+..|+ ..+......+.|+++|+||+|+......................++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999999888873 3333344557999999999998543222111113444555668999999999999999999975

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=9.1e-24  Score=161.76  Aligned_cols=155  Identities=18%  Similarity=0.098  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG   87 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   87 (216)
                      +|+|+|.||+|||||+|+|++..+.. +..+.+|.... ..+...+. .++.+|||||......        .....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987643 33333333332 33333332 5799999999654211        12345789


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV  166 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (216)
                      +|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+  ..........+....+. .++++||++|.|+
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi  152 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNT  152 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence            99999999998865553  233333333   2689999999999853  11122334444444444 7999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (216)
                      ++++++|.+.+.+.
T Consensus       153 ~~L~~~l~~~l~~~  166 (270)
T TIGR00436       153 SFLAAFIEVHLPEG  166 (270)
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999998877543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=8.2e-23  Score=163.49  Aligned_cols=158  Identities=19%  Similarity=0.242  Sum_probs=120.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   89 (216)
                      .|+|+|.|++|||||+++|++........+.+|.......+.+++. ..+.|||+||..+    ...+...+   +..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~-~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG-RSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC-ceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            8999999999999999999987765455566666676666666522 5799999999643    11222333   45699


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           90 GILLVYDVTDE---SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        90 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++|+|+|+++.   ..++.+..|.+.+..+..  ...|++||+||+|+.+     ..+.++.+.+..+..++++||++++
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            99999999764   677777788877776543  3689999999999843     1344566666667889999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIKQR  180 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (216)
                      |+++++++|.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998887654

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=4.2e-24  Score=157.17  Aligned_cols=152  Identities=17%  Similarity=0.217  Sum_probs=103.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCc-----------cccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-----------ERFRTITT   82 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~~~~   82 (216)
                      ..++|+++|.+|+|||||+++|++..+.....++.+..  ...+...    .+.+|||||.           +.+...+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            45899999999999999999999888766666665543  3333332    5899999993           34444444


Q ss_pred             cccc----cccEEEEEEECCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q 027985           83 AYYR----GAMGILLVYDVTDESSF-N---------NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA  148 (216)
Q Consensus        83 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  148 (216)
                      .++.    .++++++|+|......+ +         .-...+..+..   .+.|+++|+||+|+.+..    .+....+.
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~----~~~~~~~~  154 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR----DEVLDEIA  154 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH----HHHHHHHH
Confidence            4443    46788888888643221 0         00111222222   368999999999985422    33455566


Q ss_pred             HHhCC---------cEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          149 DEYGI---------KFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       149 ~~~~~---------~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      +.++.         .++++||++| |+++++++|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            66554         4899999999 999999999887643

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=9.6e-23  Score=164.84  Aligned_cols=155  Identities=22%  Similarity=0.243  Sum_probs=119.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TT   82 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   82 (216)
                      ....++|+++|.+|+|||||+|+|++... .....++.+.++....+.+++  ..+.+|||||.......        ..
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            34568999999999999999999998754 334556777788878888887  56899999997654322        23


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      .+++.+|++++|+|++++.+.+..  |+..+..   .+.|+++|+||+|+...       ....+.+..+..++.+|+++
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~  345 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ  345 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec
Confidence            467899999999999988776664  5554432   36899999999998542       12344566677899999998


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~  181 (216)
                       .||+++|+.|.+.+.+..
T Consensus       346 -~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             -CCHHHHHHHHHHHHHHHh
Confidence             699999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=1.1e-22  Score=143.59  Aligned_cols=146  Identities=23%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   86 (216)
                      ++|+++|++|+|||||++++++.... ....++.+.+.....+..++  ..+.+|||||.......        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642 23344555555555555555  57899999997554321        224567


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                      .+|++++|+|+.++.+......+..      ..+.|+++|+||+|+.+....        .....+..++++||.++.|+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence            8999999999998777666544332      336899999999998653322        33444578999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          167 EQVFFSIAREI  177 (216)
Q Consensus       167 ~~l~~~l~~~~  177 (216)
                      ++++++|.+.+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=3.1e-23  Score=149.20  Aligned_cols=154  Identities=24%  Similarity=0.270  Sum_probs=108.1

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccc----cccc---ccccccccEE
Q 027985           20 LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERF----RTIT---TAYYRGAMGI   91 (216)
Q Consensus        20 v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~   91 (216)
                      ++|++|+|||||+++|.+........+..+.+.....+.++ +  ..+.|||+||....    ..++   ...++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999887533333444444554555565 4  57899999996421    1222   2346789999


Q ss_pred             EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985           92 LLVYDVTDE------SSFNNIRNWMRNIDQHAA-------DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET  158 (216)
Q Consensus        92 i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      ++|+|+.+.      .++..+..|...+.....       .+.|+++|+||+|+.... ..............+..++++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-ELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-HHHHHHHHHHhcCCCCCEEEE
Confidence            999999987      577777777777765432       368999999999985422 111111223333445689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (216)
                      ||+++.|++++++++...
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=9.7e-23  Score=165.02  Aligned_cols=164  Identities=15%  Similarity=0.164  Sum_probs=118.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----ccc---ccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRG   87 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~   87 (216)
                      ...|+|+|.|++|||||+++|++........+.+|.......+.+.+  ..|.|||+||....    ..+   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46799999999999999999998766555566677777777777776  58999999995321    111   1224567


Q ss_pred             ccEEEEEEECCCh----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC
Q 027985           88 AMGILLVYDVTDE----SSFNNIRNWMRNIDQHA-----------ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG  152 (216)
Q Consensus        88 ~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  152 (216)
                      ++++|+|+|+++.    ..+..+..+...+..+.           ....|++||+||+|+.+.. . ..+.........+
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-e-l~e~l~~~l~~~g  314 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-E-LAEFVRPELEARG  314 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-H-HHHHHHHHHHHcC
Confidence            9999999999753    35555555555554432           1358999999999985422 1 1223333344457


Q ss_pred             CcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027985          153 IKFFETSAKTNFNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (216)
                      +.+|++||++++|+++++++|.+.+.....
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            899999999999999999999998876543

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=1.6e-22  Score=159.00  Aligned_cols=162  Identities=20%  Similarity=0.230  Sum_probs=112.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-cccc-------cc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTIT-------TA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~-------~~   83 (216)
                      ...++|+++|.+|+|||||+|+|++..+.. ...+..|.+.....+..++  .++.||||||.... ..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345799999999999999999999887742 2233333444555566666  47899999997432 2211       12


Q ss_pred             ccccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEec
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSA  160 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa  160 (216)
                      .++.+|++++|+|..+  ++.... .|+..+...   +.|+++|+||+|+.+.    ....+..+....+  ..+|++||
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEec
Confidence            4678999999999865  333433 344444432   4677889999998531    2344555554443  57999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          161 KTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      ++|.|++++|++|.+.+.+...-.+
T Consensus       199 ktg~gv~eL~~~L~~~l~~~~~~~~  223 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKISPWLYA  223 (339)
T ss_pred             cCccCHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999988765544443

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=8.9e-23  Score=167.39  Aligned_cols=163  Identities=23%  Similarity=0.221  Sum_probs=116.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT   81 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   81 (216)
                      ...++|+|+|.+++|||||+++|++... .....++.+.+.....+..++.  .+.||||||...          +..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            3569999999999999999999998865 3455677777777777777774  578999999532          22111


Q ss_pred             -ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHH-HHHHHhCCcEEEE
Q 027985           82 -TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQ-ELADEYGIKFFET  158 (216)
Q Consensus        82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~-~~~~~~~~~~~~~  158 (216)
                       ..+++.+|++|+|+|++++.+...+. ++..+..   .+.|+++|+||+|+.+... .....++. .+.....++++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             23568899999999999887777663 3333333   3789999999999964211 11111122 1222233689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ||++|.|++++|+.+.+.+....
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999988775443

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=7.2e-23  Score=166.40  Aligned_cols=149  Identities=26%  Similarity=0.240  Sum_probs=114.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   84 (216)
                      ..++|+++|.+|+|||||+|+|++... .....++.+.++....+.+++  ..+.+|||||.......        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            458999999999999999999998764 344566677777777778877  57899999997654321        2236


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++.+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+.+... ..        ...+..++++||++|+
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg~  356 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTGE  356 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCCC
Confidence            788999999999998877665444332      33689999999999854211 11        3345679999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIKQ  179 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (216)
                      |+++++++|.+.+..
T Consensus       357 GI~~L~~~L~~~l~~  371 (449)
T PRK05291        357 GIDELREAIKELAFG  371 (449)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988754

>PRK11058 GTPase HflX; Provisional

Probab=99.90  E-value=1.6e-22  Score=162.77  Aligned_cols=160  Identities=22%  Similarity=0.215  Sum_probs=115.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc--ccccc------cc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AY   84 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~   84 (216)
                      ...++|+++|.+|+|||||+|+|++........++.|.+.....+.+.+. ..+.||||+|....  ...+.      ..
T Consensus       195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~  273 (426)
T PRK11058        195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQE  273 (426)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            34578999999999999999999987765555556666676666766653 26789999997331  12222      23


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEecCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETSAKTN  163 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  163 (216)
                      ++.+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+...    ....  ....+.+ ++++||++|
T Consensus       274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~----~~~~--~~~~~~~~~v~ISAktG  347 (426)
T PRK11058        274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE----PRID--RDEENKPIRVWLSAQTG  347 (426)
T ss_pred             hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh----HHHH--HHhcCCCceEEEeCCCC
Confidence            67899999999999988877776555555444444689999999999853211    1111  1123444 588999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIKQ  179 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~  179 (216)
                      +|+++++++|.+.+..
T Consensus       348 ~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        348 AGIPLLFQALTERLSG  363 (426)
T ss_pred             CCHHHHHHHHHHHhhh
Confidence            9999999999988753

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=3.1e-22  Score=159.32  Aligned_cols=162  Identities=14%  Similarity=0.177  Sum_probs=120.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   89 (216)
                      .|+|+|.|++|||||+|+|++........|.+|.......+.+.+. ..+.|+|+||...-.       ......+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            7999999999999999999988776666677777777777776542 369999999964321       11123467899


Q ss_pred             EEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEecCC
Q 027985           90 GILLVYDVT---DESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSAKT  162 (216)
Q Consensus        90 ~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  162 (216)
                      ++++|+|+.   +.+.++.+..|++.+..+..  ...|+++|+||+|+.+. . ...+.++.+.+..+  ..++++||++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~-el~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-E-EAEERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-H-HHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            999999987   45667777777777766532  25799999999998542 1 12334445555544  3789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~  181 (216)
                      +.|+++++++|.+.+.+..
T Consensus       318 g~GIdeLl~~I~~~L~~~~  336 (390)
T PRK12298        318 GLGVKELCWDLMTFIEENP  336 (390)
T ss_pred             CcCHHHHHHHHHHHhhhCc
Confidence            9999999999999887543

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=9.4e-23  Score=148.88  Aligned_cols=159  Identities=18%  Similarity=0.158  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC----CC---CCccccceeeEEEEEEEEEC------------CeEEEEEEEeCCCccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD----SF---TTSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   76 (216)
                      ++|+++|.+++|||||+++|+..    .+   ..+..++.+.+.....+.+.            +..+.+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            57999999999999999999863    11   12223334444443334333            2247899999999876


Q ss_pred             cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHH-HHH-----
Q 027985           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQE-LAD-----  149 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~-~~~-----  149 (216)
                      +..........+|++++|+|+.+.........+.  +....  +.|+++|+||+|+..... ....+.++. +..     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5333334456789999999998754333322221  11111  579999999999853211 111222222 111     


Q ss_pred             -HhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          150 -EYGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       150 -~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                       ..+++++++||++|+|+++++++|.+.+.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13478999999999999999999988775

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=1.8e-22  Score=142.56  Aligned_cols=146  Identities=20%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccccc
Q 027985           19 LLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM   89 (216)
Q Consensus        19 ~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   89 (216)
                      +++|.+|+|||||+++|++.... ....+..+.+........++  ..+.+|||||+.....        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987531 22233444445555555555  5899999999876433        2344678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQ  168 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  168 (216)
                      ++++|+|..+..+.... .....+...   +.|+++|+||+|+.+....      .......+. .++++|+++++|+++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE------AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH------HHHHHhcCCCCeEEEecccCCCHHH
Confidence            99999999765433332 222223322   5899999999998552211      222334555 789999999999999


Q ss_pred             HHHHHHHH
Q 027985          169 VFFSIARE  176 (216)
Q Consensus       169 l~~~l~~~  176 (216)
                      +|++|.+.
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=2.3e-22  Score=146.23  Aligned_cols=155  Identities=21%  Similarity=0.177  Sum_probs=109.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccc----------------cceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFI----------------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (216)
                      +|+|+|.+|+|||||+++|++........                .+.+.......+...+  ..+.+||+||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence            48999999999999999998876654331                1222333333344443  68999999999888777


Q ss_pred             cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHH---------
Q 027985           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADE---------  150 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~---------  150 (216)
                      +...++.+|++++|+|+.++..... ..++..+..   .+.|+++|+||+|+.... .......++...+.         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8888999999999999987654332 233333333   378999999999986411 11112233333332         


Q ss_pred             -----hCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          151 -----YGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       151 -----~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                           ....++++||++|.|+++++.+|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 246899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=1e-21  Score=140.79  Aligned_cols=156  Identities=26%  Similarity=0.237  Sum_probs=105.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------TT   82 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~   82 (216)
                      .++|+++|.+|+|||||+++|++.... ....++.+.......+..++  ..+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            478999999999999999999987642 23334444444445556665  36889999996433110           12


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh----CCcEEEE
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY----GIKFFET  158 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~  158 (216)
                      ..++.+|++++|+|+.++.+..... ++..+..   .+.|+++++||+|+.+..........+.+.+..    +..++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            2457899999999998876654432 2222222   268999999999986532111122222333333    3689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (216)
                      ||++++|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=2.6e-22  Score=135.45  Aligned_cols=114  Identities=37%  Similarity=0.647  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ||+|+|.+|+|||||+++|++....  ....+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988876  12222333344444556666666799999999988888888889999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 027985           95 YDVTDESSFNNIRNW---MRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      ||++++.+++.+.++   +..+..... +.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence            999999999987655   454544433 599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-24  Score=150.30  Aligned_cols=185  Identities=31%  Similarity=0.555  Sum_probs=155.0

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE-EEEEEEeCCCcccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      ...+++-++++|+|..++|||+++.++..+.++..+..+.+.++......++++. +++++||..|++++..+..-+++.
T Consensus        19 p~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyke   98 (229)
T KOG4423|consen   19 PKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKE   98 (229)
T ss_pred             CchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecC
Confidence            3457899999999999999999999999999999999999988888888777654 688999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      +++.++|||++..-+++.+..|.+.+....    ....|+++.+||+|...............+.+++|+ .++++|++.
T Consensus        99 a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke  178 (229)
T KOG4423|consen   99 AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE  178 (229)
T ss_pred             CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence            999999999999999999999999885532    234677888999998554333445677788888886 899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhcccCCCccc
Q 027985          163 NFNVEQVFFSIAREIKQRLVESDSKAEPQTI  193 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~  193 (216)
                      +.+++|+.+.+++.+..+-.+..+......-
T Consensus       179 nkni~Ea~r~lVe~~lvnd~q~~~s~~~~~~  209 (229)
T KOG4423|consen  179 NKNIPEAQRELVEKILVNDEQPIKSSAVDGD  209 (229)
T ss_pred             ccChhHHHHHHHHHHHhhccCCccccccccc
Confidence            9999999999999888666555544444333

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=6.6e-22  Score=162.26  Aligned_cols=154  Identities=20%  Similarity=0.216  Sum_probs=110.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   84 (216)
                      ...+|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++  ..+.||||||.+.        +...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            357899999999999999999998764 345566666666666677776  4689999999753        22234456


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTN  163 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (216)
                      ++.+|++|+|+|+++..+... ..+...+..   .+.|+++|+||+|+....    .+..+.+  ..+. ..+++||++|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~--~~g~~~~~~iSA~~g  184 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALW--SLGLGEPHPVSALHG  184 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHH--hcCCCCeEEEEcCCC
Confidence            789999999999998655432 233333433   368999999999985311    1122222  2333 4579999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIKQ  179 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~  179 (216)
                      .|++++|++|.+.+.+
T Consensus       185 ~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        185 RGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCcHHHHHHHHhhccc
Confidence            9999999999988754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.88  E-value=5.4e-22  Score=133.27  Aligned_cols=171  Identities=23%  Similarity=0.475  Sum_probs=145.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ..-.+||.++|++..|||||+-.+.+..+.+++..+.+.++..+.+.+.+..+.+.|||.+|++++..+.+....++-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            33579999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC----CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE----SKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      +++||++.+.++..+..|+......+..-+| |+|++|.|.--    +........++.+++..+.++|++|+....|++
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            9999999999999999999998877654444 78999999621    111122344667788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027985          168 QVFFSIAREIKQRLVE  183 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~~  183 (216)
                      .+|..+...+......
T Consensus       176 KIFK~vlAklFnL~~t  191 (205)
T KOG1673|consen  176 KIFKIVLAKLFNLPWT  191 (205)
T ss_pred             HHHHHHHHHHhCCcee
Confidence            9999888777654433

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=3.5e-21  Score=156.94  Aligned_cols=162  Identities=26%  Similarity=0.200  Sum_probs=113.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc---------
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------   81 (216)
                      ....++|+++|.+++|||||+++|++... .....++.+.+.....+..++.  .+.+|||||........         
T Consensus       169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~  246 (429)
T TIGR03594       169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVL  246 (429)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHH
Confidence            34568999999999999999999998754 3344556666666666666663  78999999975543321         


Q ss_pred             --ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----hCCcE
Q 027985           82 --TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE----YGIKF  155 (216)
Q Consensus        82 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~  155 (216)
                        ...++.+|++|+|+|+.++.+..+.. ++..+..   .+.|+++|+||+|+.+ ......+..+.+...    .++++
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCce
Confidence              23578899999999999876665543 2233332   3689999999999862 111111111222222    23689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          156 FETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      +++||++|.|++++|+++.+.+...
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=2.2e-21  Score=161.43  Aligned_cols=153  Identities=21%  Similarity=0.206  Sum_probs=112.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...+|+++|.+++|||||+++|.+..+.....++.+.+.....+.+++. ..+.|||||||+.+..++...++.+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4578999999999999999999988876666566665665556666543 278999999999999988888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-------C--CcEEEEecCCCC
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-------G--IKFFETSAKTNF  164 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~  164 (216)
                      |+|+++....+.. +.+..+.   ..+.|+++++||+|+.+.    ..+.+.......       +  ..++++||++|+
T Consensus       165 VVda~dgv~~qT~-e~i~~~~---~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       165 VVAADDGVMPQTI-EAISHAK---AANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEECCCCCCHhHH-HHHHHHH---HcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            9999864222211 1122222   236899999999998542    223333332222       2  469999999999


Q ss_pred             CHHHHHHHHHH
Q 027985          165 NVEQVFFSIAR  175 (216)
Q Consensus       165 ~i~~l~~~l~~  175 (216)
                      |++++|++|..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.1e-21  Score=138.63  Aligned_cols=142  Identities=22%  Similarity=0.224  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----ccccccccccEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----ITTAYYRGAMGIL   92 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~~~~~~~d~~i   92 (216)
                      +|+++|.+++|||||+++|.+.....  .++.       .+.+...    .+||+||......    .....+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999988654211  1111       1122221    2699999632221    1123368999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC--cEEEEecCCCCCHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--KFFETSAKTNFNVEQVF  170 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|+++..++.  ..|+..+    ..+.|+++++||+|+.+    ...+....+.+..++  +++++||++|+|++++|
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            999999876542  2333332    12578999999999854    234566677777774  89999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          171 FSIAREIKQRL  181 (216)
Q Consensus       171 ~~l~~~~~~~~  181 (216)
                      +++.+.+.+..
T Consensus       140 ~~l~~~~~~~~  150 (158)
T PRK15467        140 DYLASLTKQEE  150 (158)
T ss_pred             HHHHHhchhhh
Confidence            99988876543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=8.7e-22  Score=164.51  Aligned_cols=157  Identities=22%  Similarity=0.320  Sum_probs=114.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCcc--------ccceeeEEEEEEEEE---CCeEEEEEEEeCCCccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS-------FTTSF--------ITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQER   76 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~-------~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~   76 (216)
                      .-+|+++|..++|||||+++|+...       +...+        ..+.++......+.+   ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4579999999999999999997642       11111        112333322223333   45668999999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC---
Q 027985           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI---  153 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---  153 (216)
                      +...+..+++.+|++|+|+|+++..+......|+..+.    .+.|+++|+||+|+.+..   .....+.+.+.++.   
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence            98888899999999999999998766666666554332    267999999999985421   12233455555565   


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          154 KFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .++++||++|.|++++|++|.+.+.
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCC
Confidence            4899999999999999999987763

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04163 Era Era subfamily

Probab=99.87  E-value=4.8e-21  Score=136.27  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=102.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR   86 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   86 (216)
                      ..+|+++|.+|+|||||+++|++...........+........ .......+.+||+||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999876532222111111222222 222236899999999653322        2234578


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCC
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  165 (216)
                      .+|++++|+|+.++.. .....+...+...   +.|+++|+||+|+... .....+....+..... ..++++|++++.|
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            8999999999987621 1112223333332   5899999999998532 2222333444444443 6899999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          166 VEQVFFSIARE  176 (216)
Q Consensus       166 i~~l~~~l~~~  176 (216)
                      +++++++|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=4.8e-22  Score=144.62  Aligned_cols=159  Identities=22%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------ccccceeeEEEEEEEE--ECCeEEEEEEEeCCC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT------------------SFITTIGIDFKIRTIE--LDGKRIKLQIWDTAG   73 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G   73 (216)
                      ...+|+++|+.++|||||+.+|+......                  +.....+.......+.  ..+  ..+.|+|+||
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG   79 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG   79 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence            35789999999999999999997433211                  1122334444445554  444  6899999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHHhC
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADEYG  152 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~~  152 (216)
                      +..+.......++.+|++|+|+|+.+.-.. ...+.+..+...   +.|+++|+||+|+.........+++. .+.+..+
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            998887787889999999999999865332 233334444443   78899999999986211111112222 3333332


Q ss_pred             ------CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          153 ------IKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       153 ------~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                            ++++++||.+|.|+++|++.|.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                  47999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=3.7e-21  Score=160.63  Aligned_cols=155  Identities=21%  Similarity=0.258  Sum_probs=116.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +.|+++|.+++|||||+++|++.   .+..+..++.+.+.....+..++  ..+.|||+||++.+...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999973   34445566777777766777776  68999999999998888888889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-CCCHHHHHHHHHHh----CCcEEEEecCCC
Q 027985           93 LVYDVTD---ESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR-AVPTAKGQELADEY----GIKFFETSAKTN  163 (216)
Q Consensus        93 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~~  163 (216)
                      +|+|+++   +++.+.+    ..+...   ++| +++|+||+|+.+... ....++++.+.+..    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999987   3444433    222222   567 999999999865221 11233455555544    468999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIKQ  179 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~  179 (216)
                      +|+++++++|...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=3.1e-21  Score=164.19  Aligned_cols=159  Identities=20%  Similarity=0.214  Sum_probs=113.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ......|+|+|..++|||||+++|....+......+.+.......+.+++  ..+.||||||++.|..++...++.+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            34568899999999999999999998777655555555555555566665  5799999999999999998889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH---HHHHHhC--CcEEEEecCCCCCH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ---ELADEYG--IKFFETSAKTNFNV  166 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~~~~i  166 (216)
                      |+|||+++.-....... +..+.   ..++|++|++||+|+.+........++.   .+...++  +.+|++||++|+|+
T Consensus       365 ILVVdAddGv~~qT~e~-i~~a~---~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        365 VLVVAADDGVMPQTIEA-INHAK---AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EEEEECCCCCCHhHHHH-HHHHH---hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            99999987422111111 12222   2368999999999985421110111111   1122333  68999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          167 EQVFFSIARE  176 (216)
Q Consensus       167 ~~l~~~l~~~  176 (216)
                      +++|++|...
T Consensus       441 ~eLle~I~~~  450 (787)
T PRK05306        441 DELLEAILLQ  450 (787)
T ss_pred             hHHHHhhhhh
Confidence            9999998753

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=2e-21  Score=142.94  Aligned_cols=160  Identities=17%  Similarity=0.186  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEEEEC---------------------------C----
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIELD---------------------------G----   61 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   61 (216)
                      ++|+++|+.|+|||||+..+.+...   ..+.....+.......+.+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4789999999999999999975421   12222222222211111111                           1    


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVP  140 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~  140 (216)
                      ....+.|||+||++.+...+...+..+|++++|+|+.++.........+..+...  ...|+++|+||+|+.+... ...
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            0157999999999888777777888899999999998742111111222222222  1247899999999854111 111


Q ss_pred             HHHHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          141 TAKGQELADEY---GIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       141 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      .+.++.+....   ++.++++||++|+|++++|++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            12333333332   46899999999999999999988655

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=2.4e-21  Score=139.95  Aligned_cols=150  Identities=16%  Similarity=0.173  Sum_probs=95.5

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~   80 (216)
                      .+...++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+||+||...          +..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            446678999999999999999999998764322222222222223333343   689999999531          2222


Q ss_pred             cccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHhC--Cc
Q 027985           81 TTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG--IK  154 (216)
Q Consensus        81 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~~  154 (216)
                      ...+++   .++++++|+|+..+.+.... .++..+..   .+.|+++|+||+|+.+.. .....+.++......+  ..
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            233444   35799999999875444433 22333333   268999999999985421 1222344445555543  48


Q ss_pred             EEEEecCCCCCHH
Q 027985          155 FFETSAKTNFNVE  167 (216)
Q Consensus       155 ~~~~Sa~~~~~i~  167 (216)
                      +|++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=6.9e-21  Score=139.47  Aligned_cols=161  Identities=18%  Similarity=0.179  Sum_probs=102.2

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~   80 (216)
                      ..+..++|+|+|.+|+|||||+++|++..+.....++.+.+........+   ..+.||||||..          .+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            34567899999999999999999999876433333332222222222222   579999999942          22223


Q ss_pred             ccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHhCCcEE
Q 027985           81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELADEYGIKFF  156 (216)
Q Consensus        81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~  156 (216)
                      ...+++.   .+++++|+|..++...... .....+..   .+.|+++++||+|+.+... +...+.+..+.......++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            3334443   4678888998765433321 11122222   2688999999999854211 1112223344444467899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ++||++++|++++++.|.+.+.
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999987764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=8.7e-21  Score=158.57  Aligned_cols=146  Identities=20%  Similarity=0.243  Sum_probs=110.9

Q ss_pred             cCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccccEEEE
Q 027985           22 GDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL   93 (216)
Q Consensus        22 G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   93 (216)
                      |++|+|||||+|+|++........++.+.+.....+..++  ..+.+||+||+..+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999887667778888887777777776  46899999998776543      22222  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |+|+++.+..   ..+...+.   ..+.|+++|+||+|+.+. ..+ ..+.+.+.+..+++++++||++|+|++++++++
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~-~~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEK-KGI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHh-CCC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            9999874322   12222222   237899999999998542 222 245677888889999999999999999999999


Q ss_pred             HHHH
Q 027985          174 AREI  177 (216)
Q Consensus       174 ~~~~  177 (216)
                      .+..
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=4.7e-21  Score=161.78  Aligned_cols=161  Identities=18%  Similarity=0.199  Sum_probs=111.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeE--EEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGID--FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....|+|+|..++|||||+++|....+......+.+.+  .+...+..++....+.||||||++.|..++...++.+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            356789999999999999999999877755444444332  233333333444789999999999999999889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH---HHHHhC--CcEEEEecCCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE---LADEYG--IKFFETSAKTNFN  165 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~~  165 (216)
                      +|+|+|+++......... +..+.   ..++|+++++||+|+...........+..   +...++  ++++++||++|+|
T Consensus       322 aILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G  397 (742)
T CHL00189        322 AILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN  397 (742)
T ss_pred             EEEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence            999999987422222211 12222   23689999999999854211100111111   122233  6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREI  177 (216)
Q Consensus       166 i~~l~~~l~~~~  177 (216)
                      +++++++|....
T Consensus       398 IdeLle~I~~l~  409 (742)
T CHL00189        398 IDKLLETILLLA  409 (742)
T ss_pred             HHHHHHhhhhhh
Confidence            999999987764

>COG1159 Era GTPase [General function prediction only]

Probab=99.86  E-value=3.2e-21  Score=144.01  Aligned_cols=163  Identities=19%  Similarity=0.119  Sum_probs=112.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY   85 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~   85 (216)
                      ..--|+++|.|++|||||+|++++....-.+....|+......+...+ ..++.++||||.....        ......+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            445689999999999999999999998665555555555556655554 3699999999955432        2233457


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCC
Q 027985           86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNF  164 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (216)
                      .++|+++||+|+.++-.. .-...++.+..   .+.|+++++||+|........ ......+..... ..+|++||.+|.
T Consensus        84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccC
Confidence            889999999999873222 11112233333   257999999999986533211 223333333333 389999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q 027985          165 NVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~  182 (216)
                      |++.|.+.+...+.+...
T Consensus       159 n~~~L~~~i~~~Lpeg~~  176 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPW  176 (298)
T ss_pred             CHHHHHHHHHHhCCCCCC
Confidence            999999999888865433

>PRK00089 era GTPase Era; Reviewed

Probab=99.86  E-value=5.2e-21  Score=148.39  Aligned_cols=159  Identities=19%  Similarity=0.181  Sum_probs=104.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------cccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYR   86 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   86 (216)
                      .-.|+|+|.+|+|||||+|+|++..+........++......+...+. .++.+|||||.....        ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-AQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-ceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            356899999999999999999998764332222222222222222222 689999999964432        22233567


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCC
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  165 (216)
                      .+|++++|+|+++.... .....+..+.   ..+.|+++|+||+|+... ..........+.+..+ ..++++||+++.|
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            89999999999873221 1122222232   226899999999998531 1222334444444444 5799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~~~~  179 (216)
                      +++++++|.+.+.+
T Consensus       159 v~~L~~~L~~~l~~  172 (292)
T PRK00089        159 VDELLDVIAKYLPE  172 (292)
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999888753

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.2e-21  Score=134.11  Aligned_cols=162  Identities=25%  Similarity=0.367  Sum_probs=122.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC-------CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD-------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      .+.|+|+|..++|||||+.++...       -......++.+  ....++...+  ..+.+||.+|++...++|..+|..
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence            477999999999999999886321       11223344444  5555666664  589999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC---CcEEEEecCCC
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG---IKFFETSAKTN  163 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~  163 (216)
                      ++++||++|+++++.++.....++.+.. -...++|+++.+||.|+.+.............++..+   +.+.+|||.+|
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g  172 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG  172 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence            9999999999999999887776655533 3345899999999999865333222222222233333   68999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIKQR  180 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (216)
                      +||++-.+|+...+.++
T Consensus       173 egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  173 EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccHHHHHHHHHHHHhhc
Confidence            99999999999998766

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=2.2e-20  Score=152.47  Aligned_cols=146  Identities=23%  Similarity=0.221  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   86 (216)
                      ++|+++|.+|+|||||+++|++... .....++.+.+.....+.+++  ..+.+|||||...        ........++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998764 234455666667777777777  6899999999876        1222344678


Q ss_pred             cccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCC
Q 027985           87 GAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTN  163 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (216)
                      .+|++|+|+|+.++.+..  .+..|+   ...   +.|+++|+||+|+.+     .......+ ...++ .++++||++|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~~---~~piilv~NK~D~~~-----~~~~~~~~-~~lg~~~~~~iSa~~g  147 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKIL---RKS---NKPVILVVNKVDGPD-----EEADAYEF-YSLGLGEPYPISAEHG  147 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCcEEEEEECccCcc-----chhhHHHH-HhcCCCCCEEEEeeCC
Confidence            999999999998753332  222332   222   689999999999643     11222333 34455 4899999999


Q ss_pred             CCHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAR  175 (216)
Q Consensus       164 ~~i~~l~~~l~~  175 (216)
                      .|++++++++..
T Consensus       148 ~gv~~l~~~I~~  159 (435)
T PRK00093        148 RGIGDLLDAILE  159 (435)
T ss_pred             CCHHHHHHHHHh
Confidence            999999999887

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=5.4e-20  Score=157.28  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=115.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----------ccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------TAY   84 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~~~   84 (216)
                      .++|+++|+||+|||||+|+|++........++.|.+.....+..++  ..+.+||+||...+....          ..+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence            47899999999999999999998876666667777766666665554  689999999987654321          112


Q ss_pred             --cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985           85 --YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        85 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                        ...+|++++|+|+++.+...   .+...+...   +.|+++|+||+|+.+. .. ...+.+.+.+.++++++++|+.+
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~---giPvIvVlNK~Dl~~~-~~-i~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL---GIPCIVALNMLDIAEK-QN-IRIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHHc---CCCEEEEEEchhhhhc-cC-cHHHHHHHHHHhCCCEEEEEeec
Confidence              24789999999998754422   233334333   6899999999998542 22 24566778888999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREI  177 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (216)
                      ++|++++++.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999887754

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=3.1e-20  Score=151.64  Aligned_cols=160  Identities=26%  Similarity=0.216  Sum_probs=111.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------   80 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------   80 (216)
                      ...++|+|+|.+++|||||+++|++... .....++.+.+.....+..++  ..+.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3579999999999999999999997653 345566666666656666666  46889999996432221           


Q ss_pred             cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----hCCcEE
Q 027985           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE----YGIKFF  156 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~  156 (216)
                      ....++.+|++|+|+|+.++.+..+.. ++..+..   .+.|+++|+||+|+.+..  ...+..+.+...    ..++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence            123567899999999999876655542 2233332   268999999999986311  111112222222    246899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ++||++|.|++++++.+.+.+...
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988766543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=5.7e-20  Score=135.05  Aligned_cols=115  Identities=20%  Similarity=0.406  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccc-cEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGA-MGILL   93 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~   93 (216)
                      +|+++|++++|||+|+++|....+.....++ ..  ....+...  +....+.|||+||+..+...+..+++.+ +++||
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~--~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EP--NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-ee--cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence            6899999999999999999988776554332 22  22222221  2336899999999999888888889998 99999


Q ss_pred             EEECCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027985           94 VYDVTDE-SSFNNIRNWMRNIDQH---AADNVNKILVGNKADMDE  134 (216)
Q Consensus        94 v~d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~D~~~  134 (216)
                      |+|+.+. ..+..+..|+..+...   ...+.|+++++||+|+..
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            9999987 6777777666554322   224799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00880 Era_like Era (E

Probab=99.85  E-value=2.3e-20  Score=131.67  Aligned_cols=152  Identities=19%  Similarity=0.137  Sum_probs=104.8

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------cccccccccEE
Q 027985           20 LIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYYRGAMGI   91 (216)
Q Consensus        20 v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~   91 (216)
                      |+|++|+|||||++++++.... ....+..+.......+.... ...+.+||+||.......       ....++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987554 44444444444444444432 258999999997655432       33477899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH--HHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA--KGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++|+|+.+........ +......   .+.|+++|+||+|+..........  .........+..++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999877666554 3333322   378999999999986422111111  112223334578999999999999999


Q ss_pred             HHHHHHH
Q 027985          170 FFSIARE  176 (216)
Q Consensus       170 ~~~l~~~  176 (216)
                      +.+|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=9.6e-21  Score=131.46  Aligned_cols=163  Identities=29%  Similarity=0.589  Sum_probs=142.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      -.+++++++|..|.||||++++.+...+...+.++.+.+.....+..+.+.+++..|||.|++.+......++-+..++|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            46899999999999999999999999999999999998888777766666699999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +.||+...-++.++.+|...+...+. ++|+++.+||.|..+..   .....-.+.+..++.++++|++.+.|+..-|.|
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~---~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc---cccccceeeecccceeEEeecccccccccchHH
Confidence            99999999999999999999988765 69999999999985422   222333456677789999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      +...+.-
T Consensus       164 LarKl~G  170 (216)
T KOG0096|consen  164 LARKLTG  170 (216)
T ss_pred             HhhhhcC
Confidence            9988753

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=1.8e-20  Score=156.75  Aligned_cols=159  Identities=25%  Similarity=0.318  Sum_probs=112.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------ccccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   74 (216)
                      ++.-+|+|+|..++|||||+.+|+...  +..             +...+.+.......+.+   ++..+.++||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            345689999999999999999997532  110             11122222222222222   455689999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  153 (216)
                      ..+...+...++.+|++|+|+|+++.........|.....    .+.|+++|+||+|+.+..   .......+.+..++ 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~  157 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGID  157 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCC
Confidence            9998888899999999999999988655555545443221    268999999999985421   12223444454555 


Q ss_pred             --cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          154 --KFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       154 --~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                        .++++||++|.|+++++++|.+.+.
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              3899999999999999999988764

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.85  E-value=1.5e-19  Score=121.29  Aligned_cols=166  Identities=27%  Similarity=0.401  Sum_probs=131.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccc-ccccccccccccE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERF-RTITTAYYRGAMG   90 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~   90 (216)
                      ..||+|+|..++|||.++..|.....  ...+.+|.. +.|...++.+ +..-.+.|+||.|.... ..+-..++.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            47999999999999999999875444  334556554 5666665554 33457999999997665 5666678888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      +++||+..++++|+.+.-.-..+.... ...+|+++++||+|+.+ +.++..+.++.|++.-.+..+++++.+...+-+.
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            999999999999988765555554432 34689999999999964 7788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027985          170 FFSIAREIKQRLV  182 (216)
Q Consensus       170 ~~~l~~~~~~~~~  182 (216)
                      |..+...+.+-+.
T Consensus       167 f~~l~~rl~~pqs  179 (198)
T KOG3883|consen  167 FTYLASRLHQPQS  179 (198)
T ss_pred             HHHHHHhccCCcc
Confidence            9999888754433

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=4.6e-20  Score=150.43  Aligned_cols=151  Identities=22%  Similarity=0.224  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG   87 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   87 (216)
                      +|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++  ..+.||||||..        .+.......++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998764 234456666666666777776  479999999963        233444557789


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV  166 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (216)
                      +|++++|+|+.++.+... ..+...+...   +.|+++|+||+|+.+...     .... ....+. .++++||.+|.|+
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~-----~~~~-~~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDA-----VAAE-FYSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCcccc-----cHHH-HHhcCCCCeEEEeCCcCCCh
Confidence            999999999987533332 1222223332   689999999999854221     1122 234565 7999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~~~~  179 (216)
                      +++++++.+.+..
T Consensus       149 ~~ll~~i~~~l~~  161 (429)
T TIGR03594       149 GDLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999998877643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=2.2e-20  Score=159.94  Aligned_cols=158  Identities=22%  Similarity=0.254  Sum_probs=112.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----------ccc-c
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTI-T   81 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~-~   81 (216)
                      ..++|+++|.+|+|||||+++|++... .....++++.+.....+.+++.  .+.||||||....          ..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999998875 2344566666776667777774  5779999995421          111 1


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHHh----CCcEE
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADEY----GIKFF  156 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~----~~~~~  156 (216)
                      ...++.+|++++|+|+++..+...+.- +..+..   .+.|+++|+||+|+.+...   .+..+ .+....    ..+++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence            224678999999999998877776543 333333   3689999999999854211   11222 122221    25789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ++||++|.|++++++.+.+.+.+.
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998887654

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.3e-20  Score=123.36  Aligned_cols=157  Identities=20%  Similarity=0.416  Sum_probs=123.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      -.++|+.+|..++||||++..|+..... ...||++  +.+..+.+.+  +.|.+||.+|++..+..|.+++....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            3689999999999999999999876643 3355655  5666777765  799999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVE  167 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  167 (216)
                      |+|..+.+.++..++.+..+.... -...|++|.+||.|++++   ....+++.+.+-     ..+-+.++++.+|+|+.
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            999998888888877665554332 236788889999999763   345555555432     22457888999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          168 QVFFSIAREIK  178 (216)
Q Consensus       168 ~l~~~l~~~~~  178 (216)
                      +-|.||.+.+.
T Consensus       168 eglswlsnn~~  178 (180)
T KOG0071|consen  168 EGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHhhcc
Confidence            99999988763

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=4.5e-20  Score=145.54  Aligned_cols=161  Identities=22%  Similarity=0.206  Sum_probs=121.3

Q ss_pred             ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----
Q 027985            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----   81 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----   81 (216)
                      ++...-...++++++|.|++|||||+|.|+++.. ..+..|++|.++....+.++|  +.+.|+||+|..+.....    
T Consensus       209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iG  286 (454)
T COG0486         209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIG  286 (454)
T ss_pred             hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHH
Confidence            3444456679999999999999999999998766 567899999999999999999  789999999976544332    


Q ss_pred             ----ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985           82 ----TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE  157 (216)
Q Consensus        82 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                          ...+.++|+++||+|.+.+.+-.+..-    +. ....+.|+++|.||.|+......      ..+....+.+++.
T Consensus       287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~----~~-~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~  355 (454)
T COG0486         287 IERAKKAIEEADLVLFVLDASQPLDKEDLAL----IE-LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIIS  355 (454)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCchhhHHH----HH-hcccCCCEEEEEechhccccccc------chhhccCCCceEE
Confidence                235678999999999998523222211    11 33447899999999999653221      1111222347899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 027985          158 TSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      +|+++++|++.|.+.|.+.+...
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhc
Confidence            99999999999999988887655

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=1.1e-19  Score=136.03  Aligned_cols=151  Identities=22%  Similarity=0.203  Sum_probs=105.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   89 (216)
                      +|+++|++|+|||||+++|++........+..+.+.....+.+++  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998765444445555556666666766  589999999964322       12234688999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHH--------------------------------------------HHHHh--------
Q 027985           90 GILLVYDVTDES-SFNNIRNWMR--------------------------------------------NIDQH--------  116 (216)
Q Consensus        90 ~~i~v~d~~~~~-s~~~~~~~~~--------------------------------------------~l~~~--------  116 (216)
                      ++++|+|+++++ ....+.+.+.                                            ...-+        
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 2222222221                                            11000        


Q ss_pred             -------------cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          117 -------------AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       117 -------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                                   .....|+++|+||+|+..      .+++..+++.  ..++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         012368899999999843      3444445443  3589999999999999999988765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=3.7e-19  Score=123.54  Aligned_cols=158  Identities=22%  Similarity=0.322  Sum_probs=120.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC--------Ccccc--ceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT--------TSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      .....||+|.|+.++||||+++++......        .+...  ..+.-.....+.++++ ..+++++||||+++..+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHH
Confidence            456789999999999999999999876641        11111  1222222233344443 589999999999999999


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--CCcEEEEe
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETS  159 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~S  159 (216)
                      .-.++.+.++|+++|.+++..+ .....++.+....+  +|++|.+||.|+.+   ....+.++++.+..  ..+++..+
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~---a~ppe~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD---ALPPEKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC---CCCHHHHHHHHHhccCCCceeeee
Confidence            9999999999999999998888 55555565555432  89999999999965   45677777766655  68999999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIARE  176 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~  176 (216)
                      +.++++..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999988876655

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=1.8e-19  Score=154.32  Aligned_cols=156  Identities=19%  Similarity=0.159  Sum_probs=108.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITT   82 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~   82 (216)
                      .....+|+|+|.+++|||||+|+|++... .....++.+.+.......+++  ..+.+|||||.+.        +.....
T Consensus       272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~  349 (712)
T PRK09518        272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQ  349 (712)
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence            34467899999999999999999998754 234456677666666666666  4789999999653        122233


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecC
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAK  161 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (216)
                      ..++.+|++|+|+|+.+.-...+ ..|...+..   .+.|+++|+||+|+....     .....+. ..+. ..+++||+
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~-----~~~~~~~-~lg~~~~~~iSA~  419 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE-----YDAAEFW-KLGLGEPYPISAM  419 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch-----hhHHHHH-HcCCCCeEEEECC
Confidence            46789999999999976322111 134444433   378999999999984311     1122222 2232 46899999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (216)
                      +|.|+++++++|.+.+..
T Consensus       420 ~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        420 HGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCchHHHHHHHHhccc
Confidence            999999999999988743

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.83  E-value=6.4e-20  Score=136.75  Aligned_cols=184  Identities=17%  Similarity=0.170  Sum_probs=122.1

Q ss_pred             CCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----
Q 027985            3 TAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----   78 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----   78 (216)
                      +...|...+....+.|+|+|+|++|||||.|.+.+.++...+....|++....-+-..+. .++.|+||||.-.-.    
T Consensus        60 ~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~  138 (379)
T KOG1423|consen   60 ALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRR  138 (379)
T ss_pred             cccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhh
Confidence            344566667788999999999999999999999999997776666665555554433333 699999999932111    


Q ss_pred             --------cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------------C
Q 027985           79 --------TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR------------A  138 (216)
Q Consensus        79 --------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~------------~  138 (216)
                              ......+..+|++++++|+++....-. .+.+..+..+.  .+|-++|+||.|......            .
T Consensus       139 ~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~  215 (379)
T KOG1423|consen  139 HHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGE  215 (379)
T ss_pred             HHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccc
Confidence                    011224567999999999986332211 12233444443  578899999999743211            1


Q ss_pred             CC---HHHHHHHHHHh---------C----CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhcccCCC
Q 027985          139 VP---TAKGQELADEY---------G----IKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP  190 (216)
Q Consensus       139 ~~---~~~~~~~~~~~---------~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~  190 (216)
                      +.   .+..+.|....         +    -.+|.+||.+|+||+++.++|...+.....+.+...-+
T Consensus       216 l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T  283 (379)
T KOG1423|consen  216 LAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT  283 (379)
T ss_pred             cchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence            11   11122222111         1    14899999999999999999999887766666554433

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.83  E-value=1.5e-19  Score=150.29  Aligned_cols=158  Identities=18%  Similarity=0.170  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC----------------CeEEEEEEEeCCCcccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~   79 (216)
                      .-|+++|.+++|||||+++|.+..+......+.+.+.....+..+                .....+.||||||++.+..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            468999999999999999999887644322222211111111110                0001388999999999999


Q ss_pred             ccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---C--------CHHH--
Q 027985           80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA---V--------PTAK--  143 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~--------~~~~--  143 (216)
                      ++...++.+|++++|+|+++   +++++.+.    .+..   .+.|+++++||+|+.+....   .        ..+.  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            88889999999999999987   44444332    2222   26899999999998531100   0        0000  


Q ss_pred             ----------HHHHHH------------Hh--CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          144 ----------GQELAD------------EY--GIKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       144 ----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                                ...+.+            ..  .++++++||++|+|+++|+.+|.......
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~  218 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQY  218 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHH
Confidence                      011111            11  25899999999999999999887655443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=7.8e-20  Score=148.51  Aligned_cols=156  Identities=20%  Similarity=0.114  Sum_probs=106.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCC-----------------------------CccccceeeEEEEEEEEEC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SFT-----------------------------TSFITTIGIDFKIRTIELD   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   60 (216)
                      ....++|+++|..++|||||+.+|+..  ...                             .+...+.+.+.....+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            345699999999999999999999752  111                             1123455666665555555


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI--RNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      +  +.+.|||+||++.+.......++.+|++++|+|+++.++....  ..++. +..... ..|+++|+||+|+.+....
T Consensus        84 ~--~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~~~~~  159 (426)
T TIGR00483        84 K--YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVNYDEE  159 (426)
T ss_pred             C--eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccCccHH
Confidence            4  7899999999988766666677899999999999987533211  11111 222222 3578899999999642221


Q ss_pred             ---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985          139 ---VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  171 (216)
                         ....+++.+++..+     +.++++||++|+|+.+++.
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence               12345566666655     5799999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.83  E-value=1.3e-19  Score=147.18  Aligned_cols=154  Identities=21%  Similarity=0.137  Sum_probs=103.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECCe
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDGK   62 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (216)
                      ..++|+++|.+++|||||+++|+....                               ..+..++.|.+.....+..++ 
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-   83 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-   83 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence            459999999999999999999973221                               112245566666655555544 


Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---
Q 027985           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDESKRA---  138 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---  138 (216)
                       +.+.||||||++.+.......++.+|++++|+|+++...+.. ...++..+... . ..|+++++||+|+.+....   
T Consensus        84 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         84 -YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             -eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence             789999999998776655566789999999999987312211 12222222222 1 2468999999998642211   


Q ss_pred             CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985          139 VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       139 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ...++++.+.+..+     +.++++||++|+|++++..
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            12344555555555     4699999999999987553

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=7.9e-20  Score=143.78  Aligned_cols=149  Identities=19%  Similarity=0.145  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   85 (216)
                      ..|+++|.|++|||||+|+|++... ..+..|++|.+.......+.+.  .|.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            6799999999999999999999877 4577889999999999888884  69999999966432         2223457


Q ss_pred             ccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           86 RGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      .++|++|||+|....-+-.  .+.++   +.   ..++|+++|+||+|...      .+....-.-.+|. .++.+||..
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~---Lr---~~~kpviLvvNK~D~~~------~e~~~~efyslG~g~~~~ISA~H  149 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKI---LR---RSKKPVILVVNKIDNLK------AEELAYEFYSLGFGEPVPISAEH  149 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHH---HH---hcCCCEEEEEEcccCch------hhhhHHHHHhcCCCCceEeehhh
Confidence            7899999999997643322  22222   22   22689999999999631      2222222334554 799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIK  178 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~  178 (216)
                      |.|+.+|++.+...+.
T Consensus       150 g~Gi~dLld~v~~~l~  165 (444)
T COG1160         150 GRGIGDLLDAVLELLP  165 (444)
T ss_pred             ccCHHHHHHHHHhhcC
Confidence            9999999999999885

>COG2262 HflX GTPases [General function prediction only]

Probab=99.82  E-value=3.5e-19  Score=138.21  Aligned_cols=169  Identities=24%  Similarity=0.206  Sum_probs=129.2

Q ss_pred             ccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------
Q 027985            5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------   76 (216)
Q Consensus         5 ~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------   76 (216)
                      ..|.++.....+.|.++|..++|||||+|.|++...-.....+.|.+.....+.+.++ ..+.+.||-|.-.        
T Consensus       182 ~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~  260 (411)
T COG2262         182 PRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVE  260 (411)
T ss_pred             HHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHH
Confidence            3566677888999999999999999999999988776666777778888888888754 4789999999321        


Q ss_pred             -cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcE
Q 027985           77 -FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKF  155 (216)
Q Consensus        77 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  155 (216)
                       |.+ .......+|+++.|+|++++...+.+..-...+.......+|+++|.||+|+..+..     ....+..... ..
T Consensus       261 AFks-TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~  333 (411)
T COG2262         261 AFKS-TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NP  333 (411)
T ss_pred             HHHH-HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCC-Ce
Confidence             222 223456799999999999998777777776777766666799999999999754222     1111111112 58


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          156 FETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      +.+||++|+|++.|++.|.+.+....
T Consensus       334 v~iSA~~~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         334 VFISAKTGEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             EEEEeccCcCHHHHHHHHHHHhhhcc
Confidence            99999999999999999998887543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=2.9e-19  Score=149.15  Aligned_cols=156  Identities=21%  Similarity=0.275  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC--CCCC--------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD--SFTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (216)
                      +|+|+|..++|||||+.+|+..  .+..              +...+.++......+.+.+  +.+.||||||+..+...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            6899999999999999999852  2211              1123344444445556655  78999999999999888


Q ss_pred             cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------HhCC
Q 027985           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-------EYGI  153 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~  153 (216)
                      +...++.+|++++|+|+.+. .......|+..+...   ++|+++|+||+|+.+........++..+..       ...+
T Consensus        81 v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            88999999999999999863 334445566655543   689999999999864322212233333332       2346


Q ss_pred             cEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027985          154 KFFETSAKTNF----------NVEQVFFSIAREIK  178 (216)
Q Consensus       154 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~  178 (216)
                      +++++||++|.          |+..+|+.|.+.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            79999999995          79999988887764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.82  E-value=1.8e-19  Score=132.97  Aligned_cols=148  Identities=24%  Similarity=0.170  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC-------------------------------ccccceeeEEEEEEEEECCeEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTT-------------------------------SFITTIGIDFKIRTIELDGKRIK   65 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (216)
                      +|+|+|.+++|||||+++|+...-..                               +.....+.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            58999999999999999996432111                               1124445555555555555  47


Q ss_pred             EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---CCHH
Q 027985           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA---VPTA  142 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~  142 (216)
                      +.||||||+..+.......++.+|++|+|+|+.++.... ....+..+... . ..++++|+||+|+.+....   ....
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            899999999887665666788999999999998653221 11222222222 1 2457778999998542211   1123


Q ss_pred             HHHHHHHHhC---CcEEEEecCCCCCHHHH
Q 027985          143 KGQELADEYG---IKFFETSAKTNFNVEQV  169 (216)
Q Consensus       143 ~~~~~~~~~~---~~~~~~Sa~~~~~i~~l  169 (216)
                      +++.+.+.++   ..++++||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3445555555   35899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=137.08  Aligned_cols=162  Identities=27%  Similarity=0.214  Sum_probs=117.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-----------   81 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   81 (216)
                      ..++|+|+|.|++|||||+|+|+++.- .....+++|.+.....+++++.  ++.++||+|...-....           
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            579999999999999999999998765 5567888889999899999885  78999999954322221           


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHhC-CcEEE
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYG-IKFFE  157 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~-~~~~~  157 (216)
                      ...+..+|++++|+|+..+-+.++.+- ...+..   .+.++++|+||.|+.+......   ..+++......+ .++++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            124567999999999998755554321 222222   3789999999999866321111   122222222223 58999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q 027985          158 TSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      +||.++.++.++|+.+........
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhc
Confidence            999999999999999877765543

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=9e-19  Score=146.12  Aligned_cols=161  Identities=17%  Similarity=0.193  Sum_probs=109.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD--DSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   79 (216)
                      ..-+|+|+|..++|||||+++|+.  ..+....            +...+.++......+....+.+.||||||+..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            356899999999999999999986  3332211            11222333333333333347999999999999998


Q ss_pred             ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------hC
Q 027985           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE-------YG  152 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~  152 (216)
                      .+..+++.+|++|+|+|+.+.... ....++..+..   .++|.++++||+|+.........+++..+...       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            899999999999999999874322 22333333333   36899999999998654333333344444322       34


Q ss_pred             CcEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027985          153 IKFFETSAKTNF----------NVEQVFFSIAREIK  178 (216)
Q Consensus       153 ~~~~~~Sa~~~~----------~i~~l~~~l~~~~~  178 (216)
                      ++++.+||++|.          |+..+++.|++.+.
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            679999999998          57888887776664

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.81  E-value=2.5e-19  Score=144.40  Aligned_cols=163  Identities=16%  Similarity=0.161  Sum_probs=104.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeeEEEEEEE--------------EE----CC------eEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRTI--------------EL----DG------KRIK   65 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~---~~~~~~~~~~~~~~~~--------------~~----~~------~~~~   65 (216)
                      +..++|+++|..++|||||+++|.+....   ++.....+.......+              ..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999999754221   1212222222111100              00    11      1257


Q ss_pred             EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHH
Q 027985           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKG  144 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~  144 (216)
                      +.+||+||++.+...+......+|++++|+|++++.......+.+..+... . ..|+++|+||+|+.+.... ...+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            999999999998877777888899999999998643112222223323222 1 2468999999998642111 112333


Q ss_pred             HHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          145 QELADEY---GIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       145 ~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ..+....   +++++++||++|+|+++++++|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            4444332   46899999999999999999988765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.81  E-value=8.6e-19  Score=147.00  Aligned_cols=153  Identities=20%  Similarity=0.174  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      -|+++|..++|||||+++|++.   .+.++...+.|++.....+...+. ..+.|||+||++.+.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            5789999999999999999864   334445556666555444444332 368999999999887767777889999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-CCCHHHHHHHHHHhC---CcEEEEecCCCCC
Q 027985           94 VYDVTDE---SSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR-AVPTAKGQELADEYG---IKFFETSAKTNFN  165 (216)
Q Consensus        94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~  165 (216)
                      |+|+++.   ++.+.+    ..+...   +.| +++|+||+|+.+... ....++++.+....+   .++|++||++|+|
T Consensus        81 VVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            9999863   333332    222222   345 578999999864211 112234444544444   6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREI  177 (216)
Q Consensus       166 i~~l~~~l~~~~  177 (216)
                      ++++++.|.+..
T Consensus       154 I~~L~~~L~~~~  165 (614)
T PRK10512        154 IDALREHLLQLP  165 (614)
T ss_pred             CHHHHHHHHHhh
Confidence            999999987654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=5.7e-19  Score=120.00  Aligned_cols=136  Identities=25%  Similarity=0.295  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccccEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGI   91 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~   91 (216)
                      -||+++|+.|+|||||+++|.+...  .+..|...       .+.+     .++||||..    .+..-......++|++
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i-------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V   67 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAI-------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVV   67 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC--CcCcccee-------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence            3799999999999999999998776  23333222       2222     236999932    2222233345689999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF  170 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~  170 (216)
                      ++|.|++++.+.-.     ..+....  ..|+|-|+||+|+..  .....+.++.+.+..|+ .+|.+|+.+|+|+++|.
T Consensus        68 ~ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~  138 (143)
T PF10662_consen   68 LLLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK  138 (143)
T ss_pred             EEEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence            99999998643110     1122222  579999999999963  23456677788888886 78999999999999999


Q ss_pred             HHHH
Q 027985          171 FSIA  174 (216)
Q Consensus       171 ~~l~  174 (216)
                      ++|.
T Consensus       139 ~~L~  142 (143)
T PF10662_consen  139 DYLE  142 (143)
T ss_pred             HHHh
Confidence            9874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.80  E-value=2.5e-19  Score=118.69  Aligned_cols=154  Identities=25%  Similarity=0.388  Sum_probs=119.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..++|+++|-.++|||||+..|.+..... ..|+.+  +....+..++. +.+.+||.+|+...+..|..++.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence            567999999999999999999998876532 344444  66677777765 79999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--------CCcEEEEecCCC
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEY--------GIKFFETSAKTN  163 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~  163 (216)
                      ||+|.+|...++.+...+-++..- ....+|+.+.+||.|+.....      ....+.+.        -+.+-+||+..+
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------~eeia~klnl~~lrdRswhIq~csals~  164 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------VEEIALKLNLAGLRDRSWHIQECSALSL  164 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------hHHHHHhcchhhhhhceEEeeeCccccc
Confidence            999999998888887766655432 233689999999999843221      12222222        246889999999


Q ss_pred             CCHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIARE  176 (216)
Q Consensus       164 ~~i~~l~~~l~~~  176 (216)
                      +|+..-.+|+...
T Consensus       165 eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  165 EGSTDGSDWVQSN  177 (185)
T ss_pred             cCccCcchhhhcC
Confidence            9998888887654

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.80  E-value=2e-18  Score=125.72  Aligned_cols=147  Identities=20%  Similarity=0.170  Sum_probs=97.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+++|..++|||||+++|+....                ..+.....+.+.....+..+  ..++.++||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--NRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--CeEEEEEECcCHHHHH
Confidence            47899999999999999999975310                11123444444443444333  3588999999998877


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHhC---
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG---  152 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~---  152 (216)
                      ......+..+|++++|+|+...-. ......+..+...   +.| +++++||+|+.....  .....+++.+....+   
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            767777889999999999976422 2222333334333   566 778899999853221  112234555555443   


Q ss_pred             --CcEEEEecCCCCCHH
Q 027985          153 --IKFFETSAKTNFNVE  167 (216)
Q Consensus       153 --~~~~~~Sa~~~~~i~  167 (216)
                        ++++++||.+|.|+.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              679999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=130.00  Aligned_cols=156  Identities=18%  Similarity=0.229  Sum_probs=119.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cccc---ccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTIT---TAYYRGA   88 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~   88 (216)
                      -.|.++|.|++|||||+++|...+.....++++|......++.+++. .++.+-|.||.-+-    ..+=   ...+..+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            35789999999999999999998887788888888888888888765 35999999994332    1222   2345679


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           89 MGILLVYDVTDE---SSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        89 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      ++++||+|++.+   ..++.+...+.++..+.  ....|.++|+||+|+++.    ....++++.+...- .++++||+.
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHHHHHHHHHcCCCcEEEeeecc
Confidence            999999999988   77777777666665443  236799999999998532    22335667776664 499999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIARE  176 (216)
Q Consensus       163 ~~~i~~l~~~l~~~  176 (216)
                      ++|+.++++.|.+.
T Consensus       352 ~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  352 GEGLEELLNGLREL  365 (366)
T ss_pred             ccchHHHHHHHhhc
Confidence            99999999887653

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.80  E-value=3.6e-19  Score=132.40  Aligned_cols=147  Identities=18%  Similarity=0.105  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECCeEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK   65 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   65 (216)
                      +|+++|..++|||||+.+|+....                               ..+.....+.+.....+.+.+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            489999999999999999852210                               111233445555555566655  68


Q ss_pred             EEEEeCCCccccccccccccccccEEEEEEECCChhh------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--C
Q 027985           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS------FNNIRNWMRNIDQHAADNVNKILVGNKADMDESK--R  137 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~  137 (216)
                      +.+||+||+..+...+...++.+|++|+|+|+.+...      .......+..... .. ..|+++++||+|+....  .
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG-VKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC-CCeEEEEEEccccccccccH
Confidence            9999999988776666667788999999999987421      1112222222222 21 36888999999986311  1


Q ss_pred             C---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHH
Q 027985          138 A---VPTAKGQELADEYG-----IKFFETSAKTNFNVE  167 (216)
Q Consensus       138 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  167 (216)
                      .   ...+.++.+....+     ++++++||++|+|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1   11222333344443     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=9.7e-19  Score=140.98  Aligned_cols=165  Identities=17%  Similarity=0.200  Sum_probs=103.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEEEE------------------C--C----eE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIEL------------------D--G----KR   63 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~   63 (216)
                      .....++|+++|..++|||||+.+|.+...   ..+.....+.........+                  +  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            445669999999999999999999965322   1222233333322111111                  0  0    02


Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTA  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~  142 (216)
                      ..+.|||+||++.+..........+|++++|+|+.++.........+..+... . ..|+++|+||+|+.+.... ...+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-G-IKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-C-CCcEEEEEEeeccccchhHHHHHH
Confidence            57999999999887665555666789999999998642111111122222222 1 2468999999998652211 1123


Q ss_pred             HHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          143 KGQELADEY---GIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       143 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      .++.+.+..   +.+++++||++|+|+++++++|...+
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            344444332   46899999999999999999988765

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.79  E-value=2.3e-18  Score=122.73  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR   86 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   86 (216)
                      .|+++|.+|+|||||++.+.+........++.+.+.....+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996544333333333333333444443   899999999533          2222222332


Q ss_pred             ---cccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHH--HhCCcEEEE
Q 027985           87 ---GAMGILLVYDVTDESSF--NNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELAD--EYGIKFFET  158 (216)
Q Consensus        87 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~  158 (216)
                         ..+++++++|.......  ..+.+|   +...   +.|+++|+||+|+..... ...........+  .....++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~---l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDW---LEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHH---HHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               46788899998765322  222233   3222   579999999999843211 111122222222  223589999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (216)
                      |++++.|+++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=5.7e-18  Score=126.98  Aligned_cols=112  Identities=19%  Similarity=0.178  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC------------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|..|+|||||+++|+......                  +.....+.......+.+.+  .++.+|||||+..+.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            48999999999999999997531100                  1112223333444455554  689999999999888


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      ..+...++.+|++++|+|+.+.... ....++..+...   +.|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~  130 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence            8888899999999999999875432 334455555443   689999999999853

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=4.2e-18  Score=142.18  Aligned_cols=158  Identities=18%  Similarity=0.196  Sum_probs=100.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEE--EEEEEEE----CCeEE----------EEEEEeCCCccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDF--KIRTIEL----DGKRI----------KLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~----------~~~i~D~~G~~~~~   78 (216)
                      ...|+++|.+++|||||+++|.+..+........+...  +......    .+..+          .+.||||||++.+.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            45799999999999999999987654332222111111  1111110    01111          27899999999999


Q ss_pred             cccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCCCC----------HH--
Q 027985           79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-KRAVP----------TA--  142 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~~~~~----------~~--  142 (216)
                      .++...++.+|++++|+|+++   +++++.+.    .+..   .+.|+++++||+|+... .....          ..  
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v  158 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV  158 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence            888888899999999999987   45554442    2222   36899999999998421 10000          00  


Q ss_pred             ---------HHHHHHHHh---------------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          143 ---------KGQELADEY---------------GIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       143 ---------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                               ++..+....               .+.++++||.+|+|++++++.+...+.+
T Consensus       159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~  219 (586)
T PRK04004        159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR  219 (586)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence                     000111111               2579999999999999999987655443

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.6e-19  Score=119.86  Aligned_cols=164  Identities=22%  Similarity=0.373  Sum_probs=116.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .+...+|+++|-.|+||||+.-++-....... .|+.+  +....+.+.+  +++++||.+|+......|..++.+.|.+
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceE
Confidence            34568999999999999999877765554332 33333  4455555544  7999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDESKRA--VPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |||+|.+|...+......+..+ ..-.-.+..+++++||.|.......  +.......-.+..-+.+|..||.+|+|+++
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999999988777665543333 2222235778889999998542111  111111111122226899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          169 VFFSIAREIKQR  180 (216)
Q Consensus       169 l~~~l~~~~~~~  180 (216)
                      .++||.+.+.++
T Consensus       170 ~~DWL~~~l~~~  181 (182)
T KOG0072|consen  170 AMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHhcc
Confidence            999999887643

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=9.4e-18  Score=126.72  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=120.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc-----ccccc---ccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTI---TTA   83 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~---~~~   83 (216)
                      +-....|+|.|.||+|||||++.+++........|++|......++..+.  .+++++||||.=     +.+.+   ...
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            34678899999999999999999999999888899999899988888776  689999999921     11111   111


Q ss_pred             cc-ccccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEe
Q 027985           84 YY-RGAMGILLVYDVTD--ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETS  159 (216)
Q Consensus        84 ~~-~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~S  159 (216)
                      .+ .-.++++|++|.+.  ..+++.....+..+...+.  .|+++|+||+|..+.   ...+++.......+ .....++
T Consensus       243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~  317 (346)
T COG1084         243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKIS  317 (346)
T ss_pred             HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhcccccccee
Confidence            22 23677999999875  4677777778888888775  799999999998641   12233333344344 4578888


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      +..+.+++.+.+.+.....+-.
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~~~  339 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALEPL  339 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhchh
Confidence            8999999988887777655443

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=2.2e-17  Score=117.23  Aligned_cols=159  Identities=20%  Similarity=0.232  Sum_probs=107.8

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------cccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERF   77 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~   77 (216)
                      ...+....|+++|.+++|||||||+|+++.  ...+..|+.|  .....+.+++   .+.++|.||          .+.+
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrT--q~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w   93 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT--QLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKW   93 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCcc--ceeEEEEecC---cEEEEeCCCcccccCCHHHHHHH
Confidence            345577899999999999999999999977  4566677766  4445566666   488999999          2334


Q ss_pred             ccccccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--
Q 027985           78 RTITTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--  152 (216)
Q Consensus        78 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  152 (216)
                      ..+...++.   +..++++++|+..+-...+. +.++.+...   ++|+++|+||+|.....  .....+...++...  
T Consensus        94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~--~~~k~l~~v~~~l~~~  167 (200)
T COG0218          94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKS--ERNKQLNKVAEELKKP  167 (200)
T ss_pred             HHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChh--HHHHHHHHHHHHhcCC
Confidence            444444554   35678888999765333332 333444443   79999999999975411  11222233333332  


Q ss_pred             --Cc--EEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          153 --IK--FFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       153 --~~--~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                        ..  ++.+|+..+.|++++...|.+.+..
T Consensus       168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence              22  8889999999999999998877643

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=8.3e-18  Score=138.13  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=121.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--c
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--R   86 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~   86 (216)
                      ..+|+++|+||+|||||+|+|++........|+.|.+.....+...+.  .++++|.||.......      ...++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            356999999999999999999999988889999999999999988885  6999999995543322      12232  3


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                      ..|++|-|+|+++-+.--.+      ..+...-+.|+++++|++|...  +.-..-+.+.+.+..|+++++++|++|+|+
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl------tlQLlE~g~p~ilaLNm~D~A~--~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL------TLQLLELGIPMILALNMIDEAK--KRGIRIDIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH------HHHHHHcCCCeEEEeccHhhHH--hcCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence            57999999999875432221      2233333789999999999744  444456677888999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~~~~  179 (216)
                      +++...+.+....
T Consensus       153 ~~l~~~i~~~~~~  165 (653)
T COG0370         153 EELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHHhccc
Confidence            9999988765443

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=6.3e-18  Score=125.30  Aligned_cols=147  Identities=22%  Similarity=0.258  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------cccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTS-------------------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   74 (216)
                      +|+|+|..++|||||+++|+.......                   .....+.......+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999986443221                   1111222222222222   345689999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC-----------HHH
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-----------TAK  143 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-----------~~~  143 (216)
                      ..+.......++.+|++++|+|+.+..+... ..++..+..   .+.|+++|+||+|+........           .+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            9888778888999999999999987654432 333333332   2589999999999752111111           122


Q ss_pred             HHHHHHHhCC-----------cEEEEecCCCCCHH
Q 027985          144 GQELADEYGI-----------KFFETSAKTNFNVE  167 (216)
Q Consensus       144 ~~~~~~~~~~-----------~~~~~Sa~~~~~i~  167 (216)
                      +..++...+.           .+++.|++.+.++.
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            3333333322           27788999988765

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=1.5e-17  Score=133.60  Aligned_cols=160  Identities=18%  Similarity=0.172  Sum_probs=103.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|++...                ..+.....+.+..  .+.+......+.|+|+||++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHH
Confidence            34569999999999999999999985311                1122344444443  33343333578999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHHhC
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRAV--PTAKGQELADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~  152 (216)
                      .+.......+..+|++++|+|+.+..... ..+.+..+...   ++| +++++||+|+.+.....  ..++++.+.+..+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            87666666678899999999998642221 22233333333   567 57889999986422211  1234555555554


Q ss_pred             -----CcEEEEecCCCC--------CHHHHHHHHHHHH
Q 027985          153 -----IKFFETSAKTNF--------NVEQVFFSIAREI  177 (216)
Q Consensus       153 -----~~~~~~Sa~~~~--------~i~~l~~~l~~~~  177 (216)
                           ++++++||++|.        ++.++++.|.+.+
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence                 579999999983        4555555555443

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.76  E-value=4.3e-17  Score=121.18  Aligned_cols=153  Identities=14%  Similarity=0.101  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccc--------------cceeeEEEE------------------------EEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFI--------------TTIGIDFKI------------------------RTIE   58 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~--------------~~~~~~~~~------------------------~~~~   58 (216)
                      ||+++|..++|||||+++|....+.....              .+.+.....                        ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58999999999999999998765533211              011100000                        1112


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           59 LDGKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                      ..+  ..+.++|+||++.+.......+.  .+|++++|+|+..+.. .....++..+...   ++|+++|+||+|+.+..
T Consensus        81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence            222  47899999999887655444443  6899999999876433 2223333334333   68999999999985321


Q ss_pred             C-CCCHHHHHHHHHH--------------------------hCCcEEEEecCCCCCHHHHHHHHHH
Q 027985          137 R-AVPTAKGQELADE--------------------------YGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       137 ~-~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      . ......++.+.+.                          ...++|.+|+.+|+|+++++..|..
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            1 1111222222221                          1148999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.76  E-value=7.1e-17  Score=121.66  Aligned_cols=156  Identities=22%  Similarity=0.197  Sum_probs=115.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYY   85 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~   85 (216)
                      ...-+|+++|.|++|||||++.|++........+++|.+.....+.++|  .+++|.|+||.-.       .........
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            4457899999999999999999999998888888888889999999988  6999999999332       123455678


Q ss_pred             ccccEEEEEEECCChhh-HHHHHH--------------------------------------------HHHHHHHhcC--
Q 027985           86 RGAMGILLVYDVTDESS-FNNIRN--------------------------------------------WMRNIDQHAA--  118 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~l~~~~~--  118 (216)
                      |+||++++|+|+..... .+.+.+                                            .+.+..-+++  
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999975332 222211                                            1111111110  


Q ss_pred             -------------------CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          119 -------------------DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       119 -------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                                         .-+|.++|.||.|+..      .+....+.+..  ..+++||..+.|+++|.+.|.+.+-
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                               1367899999999854      33444444444  6999999999999999999888774

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=2.9e-17  Score=132.07  Aligned_cols=160  Identities=17%  Similarity=0.140  Sum_probs=103.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcC-------CC---------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      +....++|+++|.+++|||||+++|++.       .+         ..+...+.+.+.....+..+  ..++.|+||||+
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--~~~i~~iDtPGh   85 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--NRHYAHVDCPGH   85 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--CcEEEEEECCCH
Confidence            3456799999999999999999999852       00         11223444444433333333  357899999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--CCCHHHHHHHHHHh
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKR--AVPTAKGQELADEY  151 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~--~~~~~~~~~~~~~~  151 (216)
                      +.+.......+..+|++++|+|+.+... ....+.+..+...   ++|.+ +++||+|+.+...  +....+++.+....
T Consensus        86 ~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~  161 (396)
T PRK12735         86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence            8876666677889999999999986422 2222333333322   57765 5799999864211  11123455555554


Q ss_pred             C-----CcEEEEecCCCC----------CHHHHHHHHHHH
Q 027985          152 G-----IKFFETSAKTNF----------NVEQVFFSIARE  176 (216)
Q Consensus       152 ~-----~~~~~~Sa~~~~----------~i~~l~~~l~~~  176 (216)
                      +     ++++++||.+|.          ++.+|++.|.+.
T Consensus       162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            3     578999999985          455555555543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.74  E-value=5.5e-17  Score=123.14  Aligned_cols=164  Identities=17%  Similarity=0.174  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----cc---ccccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~---~~~~~~~~d   89 (216)
                      .|.++|.|++||||||+.+++.......+|++|.......+..++. -.|.+-|.||.-+-.    .+   ...++..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            4678999999999999999998887777778777788777777443 379999999943211    11   223456789


Q ss_pred             EEEEEEECCChh---hHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEE-EEecCCC
Q 027985           90 GILLVYDVTDES---SFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFF-ETSAKTN  163 (216)
Q Consensus        90 ~~i~v~d~~~~~---s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~  163 (216)
                      ++++|+|++..+   ..++......++..+.  -.+.|.+||+||+|+..+. +......+.+.+..+...+ .+|+.++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            999999997544   3556555566665543  2368999999999974422 2223333444444444322 2999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 027985          164 FNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~~  182 (216)
                      +|++++...+.+.+.+...
T Consensus       319 ~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         319 EGLDELLRALAELLEETKA  337 (369)
T ss_pred             cCHHHHHHHHHHHHHHhhh
Confidence            9999999999998887764

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=9.9e-17  Score=128.44  Aligned_cols=167  Identities=20%  Similarity=0.206  Sum_probs=118.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .+=|.++|.-..|||||+..+-.........-..|....-..+..+. ..-.+.|+|||||+.|..+......-+|++|+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            35678999999999999999988877665555555556656666541 11379999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHHhC--CcEEEEecCCCCCHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL---ADEYG--IKFFETSAKTNFNVEQ  168 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~~i~~  168 (216)
                      |++++|.-.-+.    .+.+......+.|+++.+||+|.++........+.+..   .+.++  ..++++||++|+|+++
T Consensus        85 VVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e  160 (509)
T COG0532          85 VVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE  160 (509)
T ss_pred             EEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence            999988422222    22233333348999999999998643322111111111   12222  5799999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 027985          169 VFFSIAREIKQRLVESD  185 (216)
Q Consensus       169 l~~~l~~~~~~~~~~~~  185 (216)
                      |++.+.-....+..+.+
T Consensus       161 LL~~ill~aev~elka~  177 (509)
T COG0532         161 LLELILLLAEVLELKAN  177 (509)
T ss_pred             HHHHHHHHHHHHhhhcC
Confidence            99998777766644444

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.74  E-value=5.2e-17  Score=130.72  Aligned_cols=147  Identities=20%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC----------------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS----------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|++..                ...+...+.|.+..  .+.+.....++.||||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCchH
Confidence            3457999999999999999999997321                01122344555543  34444344689999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC--CCHHHHHHHHHHhC
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKRA--VPTAKGQELADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~--~~~~~~~~~~~~~~  152 (216)
                      .|.......+..+|++++|+|+.+..... ..+.+..+...   +.|.+ +++||+|+.+....  ...++++.+.+..+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            87665666677889999999998732222 22233333332   56655 68999998642211  11234566666554


Q ss_pred             -----CcEEEEecCCCC
Q 027985          153 -----IKFFETSAKTNF  164 (216)
Q Consensus       153 -----~~~~~~Sa~~~~  164 (216)
                           ++++++||.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00071 tufA elongation factor Tu

Probab=99.74  E-value=6.2e-17  Score=130.70  Aligned_cols=149  Identities=17%  Similarity=0.134  Sum_probs=99.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|.+++|||||+++|++...                ..+..++.+.+.....+..++  .++.|+|+||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence            44569999999999999999999986411                122234555554444444333  578899999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHhC
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~  152 (216)
                      .+.......+..+|++++|+|+...-. ....+.+..+...   ++| +++++||+|+.+...  +....++..+.+..+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            876666777889999999999976422 2222333333322   577 678899999864221  112234555555543


Q ss_pred             -----CcEEEEecCCCCCH
Q 027985          153 -----IKFFETSAKTNFNV  166 (216)
Q Consensus       153 -----~~~~~~Sa~~~~~i  166 (216)
                           ++++++|+.+|.++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 57999999998754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.73  E-value=9.1e-18  Score=134.83  Aligned_cols=164  Identities=26%  Similarity=0.359  Sum_probs=117.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      .-.++|+++|..|+||||||-.|....+.+...+-...-.....+.  ...+...|+|++............++.+|++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt--Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT--PENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC--cCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            3469999999999999999999999988765444332111122222  23366899999876655555577899999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-C-cEEEEecCCCCCHH
Q 027985           93 LVYDVTDESSFNNIRN-WMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-I-KFFETSAKTNFNVE  167 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~-~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~~i~  167 (216)
                      +||+.+++.+++.+.. |+-.+++..  ..++|+|+|+||.|..+....-.......+...+. + .+|+|||++..++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            9999999999999875 666666554  25799999999999865433311112333333333 3 68999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          168 QVFFSIAREIK  178 (216)
Q Consensus       168 ~l~~~l~~~~~  178 (216)
                      ++|....+.+.
T Consensus       165 e~fYyaqKaVi  175 (625)
T KOG1707|consen  165 ELFYYAQKAVI  175 (625)
T ss_pred             hhhhhhhheee
Confidence            99988666554

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.73  E-value=3.6e-17  Score=132.91  Aligned_cols=150  Identities=20%  Similarity=0.147  Sum_probs=102.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|..++|||||+.+|+...-                               ..+.....+.+.....+..  
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~--   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET--   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC--
Confidence            3458999999999999999998863111                               1112233344444444444  


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhH-------HHHHHHHHHHHHhcCCCC-cEEEEEeCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-------NNIRNWMRNIDQHAADNV-NKILVGNKADMD  133 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~  133 (216)
                      ....+.|+|+|||+.|.......++.+|++|+|+|+.+. .+       ....+.+..+...   ++ ++++++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence            346899999999999988888899999999999999863 22       2333333323222   55 468889999975


Q ss_pred             CCC-----CCCCHHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985          134 ESK-----RAVPTAKGQELADEYG-----IKFFETSAKTNFNVEQ  168 (216)
Q Consensus       134 ~~~-----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (216)
                      +..     .....++++.+.+..+     +.++++||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211     1112455667777666     5799999999999854

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=1.8e-16  Score=116.05  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=96.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCcccccee-e--EEEEEEEEECCeEEEEEEEeCCCccccccc-----cccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIG-I--DFKIRTIELDGKRIKLQIWDTAGQERFRTI-----TTAYYR   86 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~   86 (216)
                      +++|+|+|.+|+|||||+|+|++...........+ .  ......+...+ ...+.+||+||.......     ....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            47899999999999999999998654322111111 0  11111111111 237899999996532221     122366


Q ss_pred             cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC----------CCHHHHH----HHHHHh
Q 027985           87 GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESKRA----------VPTAKGQ----ELADEY  151 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~----------~~~~~~~----~~~~~~  151 (216)
                      .+|+++++.+..    +... ..|+..+...   +.|+++|+||+|+......          ...+.++    ......
T Consensus        80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            789888875432    2222 2344445443   5799999999998321111          0011111    111121


Q ss_pred             C---CcEEEEecC--CCCCHHHHHHHHHHHHHHHHhhh
Q 027985          152 G---IKFFETSAK--TNFNVEQVFFSIAREIKQRLVES  184 (216)
Q Consensus       152 ~---~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~~~~  184 (216)
                      +   -.+|.+|+.  .+.|+..+.+.|+..+.++....
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~  190 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV  190 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence            2   378999998  57999999999999998776553

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=8.2e-17  Score=128.55  Aligned_cols=162  Identities=24%  Similarity=0.248  Sum_probs=124.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF---------------TTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   76 (216)
                      ++.-++.|+-.-..|||||..+|+...-               +.+.+.+.|..-....+.+ ++..+.++++|||||..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5667889999999999999999863211               1223445554444444433 35668999999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEE
Q 027985           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFF  156 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      |......-+.-|+++|+|+|+...-.-+.+.+++..+..    +..+|.|+||+|++.+..+.-..+++.+.......++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            999999999999999999999987666667666666654    6788999999999775554444555555555556899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .+||++|.|+.++++.|++.+.
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCC
Confidence            9999999999999999998875

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.73  E-value=3.9e-17  Score=133.66  Aligned_cols=154  Identities=21%  Similarity=0.160  Sum_probs=98.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------------ccccceeeEEEEEEEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------------------------------SFITTIGIDFKIRTIE   58 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   58 (216)
                      ....++|+|+|..++|||||+.+|+...-..                                 +...+.+++.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            4566999999999999999999996432110                                 0112234455444444


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      .++  .++.|+||||++.+.......+..+|++++|+|+...-.... .+.+..+... . ..|+++++||+|+.+....
T Consensus       104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G-IKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C-CCceEEEEEeeccccchhH
Confidence            444  589999999998876555566799999999999976422111 1111222222 1 2478889999998642222


Q ss_pred             CCH---HHHHHHHHHh----CCcEEEEecCCCCCHHHHH
Q 027985          139 VPT---AKGQELADEY----GIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus       139 ~~~---~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~  170 (216)
                      ...   .++..+.+..    ...++++||++|+|++++-
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            112   2222333333    3679999999999998653

>PLN03126 Elongation factor Tu; Provisional

Probab=99.72  E-value=1.3e-16  Score=130.23  Aligned_cols=149  Identities=17%  Similarity=0.132  Sum_probs=99.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|+....                ..+.....+.+.....+..++  ..+.|+|+||++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence            45679999999999999999999985211                122334444444444444444  588999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHh-
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEY-  151 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~-  151 (216)
                      .+.......+..+|++++|+|+.+... ....+++..+...   ++| +++++||+|+.+...  +...++++.+.+.. 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            887777777889999999999986432 2223344434333   567 678899999864211  11123455555553 


Q ss_pred             ----CCcEEEEecCCCCCH
Q 027985          152 ----GIKFFETSAKTNFNV  166 (216)
Q Consensus       152 ----~~~~~~~Sa~~~~~i  166 (216)
                          +++++++|+.++.++
T Consensus       232 ~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        232 FPGDDIPIISGSALLALEA  250 (478)
T ss_pred             CCcCcceEEEEEccccccc
Confidence                367999999988543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.72  E-value=5.7e-17  Score=130.72  Aligned_cols=149  Identities=23%  Similarity=0.197  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------------CccccceeeEEEEEEEEECCe
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT---------------------------------TSFITTIGIDFKIRTIELDGK   62 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~   62 (216)
                      ++|+++|..++|||||+.+|+...-.                                 .+.....+.+.....+..++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            58999999999999999998632210                                 11122334555555555544 


Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC--
Q 027985           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP--  140 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--  140 (216)
                       .++.|+||||++.+.......+..+|++++|+|+........ .+.+..+... . ..++++++||+|+.+......  
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence             589999999999887666677889999999999976432211 1112222222 1 246888999999864222211  


Q ss_pred             -HHHHHHHHHHhC---CcEEEEecCCCCCHHHH
Q 027985          141 -TAKGQELADEYG---IKFFETSAKTNFNVEQV  169 (216)
Q Consensus       141 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l  169 (216)
                       .++...+.+..+   +.++++||++|+|+++.
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence             122333334444   46999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=8.9e-17  Score=122.61  Aligned_cols=112  Identities=21%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|.+++|||||+++|+....                  ..+.....+++.....+.+++  .++.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            489999999999999999963111                  112334455555566666666  689999999998888


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      ..+...++.+|++|+|+|+.+.-.... ...+..+...   ++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence            878889999999999999976432222 2333333333   689999999999854

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.71  E-value=1.2e-16  Score=129.90  Aligned_cols=151  Identities=19%  Similarity=0.127  Sum_probs=100.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC--C-----------------------------CCccccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--F-----------------------------TTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|..++|||||+.+|+...  .                             ..+.....+.+.....+..++
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            456899999999999999999986411  0                             112233445555444444444


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC-
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWMRNIDQHAADNVN-KILVGNKADMD-  133 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~-  133 (216)
                        ..+.|+|+|||..|.......+..+|++++|+|+.....   +   ....+.+..+...   ++| +|+++||+|.. 
T Consensus        85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT  159 (446)
T ss_pred             --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence              689999999999988777788899999999999986421   0   2233333333333   555 57899999952 


Q ss_pred             -CCCC---CCCHHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985          134 -ESKR---AVPTAKGQELADEYG-----IKFFETSAKTNFNVEQ  168 (216)
Q Consensus       134 -~~~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (216)
                       +...   ....++++.+....+     ++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             2111   122333444444433     5799999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=3.8e-16  Score=125.57  Aligned_cols=148  Identities=18%  Similarity=0.142  Sum_probs=97.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|++...                ..+...+.+.+.....+..++  .++.|+||||+.
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHA   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHH
Confidence            45679999999999999999999986311                112244455554433333333  578999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC--CCHHHHHHHHHHh-
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKRA--VPTAKGQELADEY-  151 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~--~~~~~~~~~~~~~-  151 (216)
                      .+.......+..+|++++|+|+.++.. ......+..+...   +.|.+ +++||+|+.+....  ....+++.+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            876666677889999999999976422 2223333434333   57876 57999998642111  1122344444443 


Q ss_pred             ----CCcEEEEecCCCCC
Q 027985          152 ----GIKFFETSAKTNFN  165 (216)
Q Consensus       152 ----~~~~~~~Sa~~~~~  165 (216)
                          +++++++||.++.+
T Consensus       163 ~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        163 FPGDDTPIIRGSALKALE  180 (396)
T ss_pred             CCccCCcEEEeecccccC
Confidence                36899999998753

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.71  E-value=1.1e-16  Score=118.43  Aligned_cols=164  Identities=18%  Similarity=0.304  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccccccE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGAMG   90 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   90 (216)
                      ||+++|+.+|||||+.+.+..+-. .....-..|.+.....+...+. +.+.|||.||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999999886643 2333333445555566655543 6999999999875433     35667899999


Q ss_pred             EEEEEECCChh---hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C---CHHHHHHHHHHhC---CcEEEEe
Q 027985           91 ILLVYDVTDES---SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA--V---PTAKGQELADEYG---IKFFETS  159 (216)
Q Consensus        91 ~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~---~~~~~~S  159 (216)
                      +|||+|+...+   .+..+...+..+..+.+ ++.+.+.+.|+|+..+..+  .   ..+.+.......+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999998443   33444455555666554 7889999999998542211  1   1222333344445   6788888


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          160 AKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      ..+ +.+-+.|..+++.+..+...
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~  181 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLST  181 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHH
Confidence            776 68899999988888755443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.71  E-value=1.6e-16  Score=117.68  Aligned_cols=114  Identities=20%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--C--------------ccccceeeEEEEEEEEEC--------CeEEEEEEEeCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA   72 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   72 (216)
                      +|+|+|..++|||||+.+|+.....  .              +.....++......+.+.        +..+.+.|||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            5899999999999999999743211  0              111122222222223333        335789999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |+..+.......++.+|++++|+|+.+....... ..+.....   .++|+++|+||+|+..
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~~  139 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRLI  139 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcch
Confidence            9999988888999999999999999876544432 22222222   3679999999999853

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01850 CDC_Septin CDC/Septin

Probab=99.71  E-value=2.2e-16  Score=120.94  Aligned_cols=143  Identities=22%  Similarity=0.285  Sum_probs=93.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----   79 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----   79 (216)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.+.......+..++..+++.||||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876443          244445555666667778778999999999432110    


Q ss_pred             ----------------------ccccccc--cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           80 ----------------------ITTAYYR--GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        80 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                                            .....+.  .+|+++|+++.+... +... .+.+..+.   . .+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence                                  0112233  467788888776421 1111 12223232   2 689999999999843


Q ss_pred             C-CCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985          135 S-KRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      . ........++..++..++.+|.....
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            1 22234555667777888888877653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.70  E-value=2.7e-16  Score=123.85  Aligned_cols=159  Identities=25%  Similarity=0.280  Sum_probs=120.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCccccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF---------------TTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   74 (216)
                      .+.-+..++-.-..|||||..+|+....               .-+.+.+.|+......+.+   +|..+.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            3444567888889999999999853211               2233455555555444444   457799999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  153 (216)
                      -.|.......+..|.++++|+|++..-.-+.+.+.|..+..    +..++-|+||+|++.+..+...   +++.+..|+ 
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpervk---~eIe~~iGid  159 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERVK---QEIEDIIGID  159 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHHH---HHHHHHhCCC
Confidence            99999999999999999999999987777777787777765    5778999999999764443333   334444553 


Q ss_pred             --cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          154 --KFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       154 --~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                        ..+.+||++|.||+++++.|++.+.
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCC
Confidence              6899999999999999999998874

>cd04169 RF3 RF3 subfamily

Probab=99.70  E-value=5.4e-16  Score=118.21  Aligned_cols=113  Identities=17%  Similarity=0.146  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC--CC--------------------ccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF--TT--------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      -+|+|+|.+|+|||||+++|+...-  ..                    +.....+.......+.+.+  +.+.+|||||
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG   80 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPG   80 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCC
Confidence            3699999999999999999974211  00                    0011222333344455544  7899999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      +..+.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             chHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            988877667788999999999999864322 22333433332   2689999999999754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=3.6e-16  Score=104.88  Aligned_cols=106  Identities=25%  Similarity=0.267  Sum_probs=72.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------cccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYYR   86 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   86 (216)
                      +|+|+|.+|+|||||+|+|++... .....+..+.......+.+++.  .+.|+||||.....         ......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998643 3333444444454455667774  56799999953211         11223447


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK  129 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  129 (216)
                      .+|+++||+|+.++. -+...+.+..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~-~~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPI-TEDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHS-HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCC-CHHHHHHHHHHh----cCCCEEEEEcC
Confidence            899999999987732 233334444452    47899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.69  E-value=1.2e-15  Score=118.57  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL---------------------DG-KRIKLQIWDTAGQ-   74 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~-   74 (216)
                      |+++|.|++|||||+++|++........|+.|.+........                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999988765544555554444433322                     22 2368999999996 


Q ss_pred             ---ccccccccc---ccccccEEEEEEECC
Q 027985           75 ---ERFRTITTA---YYRGAMGILLVYDVT   98 (216)
Q Consensus        75 ---~~~~~~~~~---~~~~~d~~i~v~d~~   98 (216)
                         +....+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               333333333   489999999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.68  E-value=1.5e-15  Score=123.33  Aligned_cols=160  Identities=17%  Similarity=0.114  Sum_probs=99.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC------C----------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD------S----------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|++.      .          ...+..++.|.+.....+..+  ..++.|+||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--KRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--CeEEEEEECCCcc
Confidence            346799999999999999999999622      1          112333555655544444443  3589999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHHh-
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRA--VPTAKGQELADEY-  151 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~-  151 (216)
                      .+-......+..+|++++|+|+.+..... ..+.+..+...   +.| +|+++||+|+.+....  ....+++.+.... 
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            77655556667899999999997643221 22223333332   578 4678999998642210  1112233343332 


Q ss_pred             ----CCcEEEEecC---CCCC-------HHHHHHHHHHHH
Q 027985          152 ----GIKFFETSAK---TNFN-------VEQVFFSIAREI  177 (216)
Q Consensus       152 ----~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~  177 (216)
                          .++++++|+.   +|.|       +.+|++.|.+.+
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence                2578888875   5555       556666655543

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.68  E-value=2.7e-16  Score=127.58  Aligned_cols=166  Identities=14%  Similarity=0.144  Sum_probs=106.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEE---------------EECC-----------
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTI---------------ELDG-----------   61 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-----------   61 (216)
                      .....+.|.++|.-..|||||+.+|++...   .++...+.|.+.-....               ....           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            345679999999999999999999986432   33333333322211111               0000           


Q ss_pred             -----eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           62 -----KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        62 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                           ....+.|+|+|||+.+.......+..+|++++|+|+.++.......+.+..+... . -.++++|+||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-K-LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-C-CCcEEEEEecccccCHH
Confidence                 0136899999999988777777888999999999998632111222322222222 1 24688999999986421


Q ss_pred             C-CCCHHHHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          137 R-AVPTAKGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       137 ~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      . ....++++.+...   .+.+++++||++|+|++.|++.|.+.+.
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            1 1112233333332   2468999999999999999998886543

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=5.9e-16  Score=131.43  Aligned_cols=152  Identities=22%  Similarity=0.180  Sum_probs=96.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------------ccccceeeEEEEEEEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------------------------------SFITTIGIDFKIRTIE   58 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   58 (216)
                      ....++|+++|.+++|||||+++|+...-..                                 +...+.+.+.....+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            3456899999999999999999997532211                                 0112233344444444


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      .++  .++.|+||||++.+.......+..+|++++|+|+....... ..+.+..+... . ..++++++||+|+.+....
T Consensus       101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh-C-CCeEEEEEEecccccchhH
Confidence            444  57889999999887655556788999999999997642211 11122222222 1 2578889999998642221


Q ss_pred             CCH---HHHHHHHHHhC---CcEEEEecCCCCCHHH
Q 027985          139 VPT---AKGQELADEYG---IKFFETSAKTNFNVEQ  168 (216)
Q Consensus       139 ~~~---~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  168 (216)
                      ...   .++..+....+   ..++++||++|+|+++
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111   22333344444   3699999999999875

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.67  E-value=2.7e-15  Score=124.04  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=79.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------------ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      ...-+|+|+|.+++|||||+++|+.  +....                    +...+.+.......+.+++  +.+.+||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD   85 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD   85 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence            4567999999999999999999963  11100                    0011222333334455555  7899999


Q ss_pred             CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      |||+..+.......++.+|++|+|+|+.+.-.. ....++.....   .++|+++++||+|+.
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            999998887777788999999999999874322 23334433333   378999999999974

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.8e-16  Score=107.99  Aligned_cols=153  Identities=18%  Similarity=0.282  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      =|++++|-.++|||||++.|.+....+. .||..  .....+.+.+  ++++-+|.+||......|..++..+|++++.+
T Consensus        21 gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv   95 (193)
T KOG0077|consen   21 GKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV   95 (193)
T ss_pred             ceEEEEeecCCchhhHHHHHcccccccc-CCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence            4899999999999999999987665433 23322  2333556766  78999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HHh-----------C---CcEEE
Q 027985           96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELA---DEY-----------G---IKFFE  157 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~-----------~---~~~~~  157 (216)
                      |+.|.+.+...+..++.+.... -...|+++.+||+|.+...   ..++.+...   +..           +   ..+|.
T Consensus        96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            9999999999888777765433 2479999999999986533   333322221   111           1   24788


Q ss_pred             EecCCCCCHHHHHHHHHHH
Q 027985          158 TSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~  176 (216)
                      ||...+.+--+.|.|+.+.
T Consensus       173 csi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEccCccceeeeehhhh
Confidence            8988888888888887654

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=5.7e-16  Score=132.86  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=83.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCC--------C----------ccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT--------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      +...+|+|+|..++|||||+++|+.....        .          +.....+.......+.+.+  ..+.+|||||+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~   83 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH   83 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence            45689999999999999999999743210        0          0012223333334455554  68999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      ..+...+...++.+|++++|+|+++.........| ..+..   .++|+++|+||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            98888888899999999999999886655544333 33333   2689999999999854

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=8e-16  Score=121.71  Aligned_cols=166  Identities=21%  Similarity=0.194  Sum_probs=114.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-ccc--------c
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTI--------T   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~--------~   81 (216)
                      -+..++|+|+|.||+|||||+|.|..... ..+..+++|.+.....++++|  +.+.+.||+|..+. ...        .
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence            34569999999999999999999998776 567888999999888999988  68999999996651 111        1


Q ss_pred             ccccccccEEEEEEECC--ChhhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-
Q 027985           82 TAYYRGAMGILLVYDVT--DESSFNNIRNWMRNIDQHAA------DNVNKILVGNKADMDESKRAVPTAKGQELADEYG-  152 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-  152 (216)
                      ...+..+|++++|+|+.  +.++...+.+.+........      .+.+++++.||.|+...-............. .+ 
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~  421 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGR  421 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccC
Confidence            22467899999999994  33333333344444332221      2478999999999965322222211111111 11 


Q ss_pred             --C-cEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          153 --I-KFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       153 --~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                        . ...++|+++++|+++|...|.+.+...
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence              3 345699999999999999988877643

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.66  E-value=7.1e-15  Score=107.62  Aligned_cols=160  Identities=16%  Similarity=0.197  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT   82 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   82 (216)
                      ++|+++|.+|+|||||+|++++.......  .+..|.........+++  ..+.++||||......           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987653322  23344444444555665  4899999999543321           011


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHHHhCCcE
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESKRA-----VPTAKGQELADEYGIKF  155 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~  155 (216)
                      ......|++++|+++.. .+..+ ...++.+......  ..++++|.|+.|.......     ......+.+.+..+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999876 22221 2233444333321  2478899999996432210     11245566666666667


Q ss_pred             EEEecC-----CCCCHHHHHHHHHHHHHH
Q 027985          156 FETSAK-----TNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       156 ~~~Sa~-----~~~~i~~l~~~l~~~~~~  179 (216)
                      +..+.+     .+.++++|++.+.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            666644     456788888888877765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4.7e-15  Score=118.70  Aligned_cols=175  Identities=18%  Similarity=0.162  Sum_probs=121.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .+.-|.|+|.-.-|||||+..|-+..+.....-+.|...--..+..+.+ -.++|.|||||..|..+......-+|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            4566889999999999999999887775444334433333334444433 489999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-------HHhC--CcEEEEecCCCC
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA-------DEYG--IKFFETSAKTNF  164 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~~  164 (216)
                      |+.++|.-.-+.    .+.+......+.|+|+.+||+|.++.    ..+.+..-.       +.+|  +.++++||++|+
T Consensus       231 VVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  231 VVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            999988432222    22333333347999999999997542    233332222       2333  579999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhcccCCCcccccCC
Q 027985          165 NVEQVFFSIAREIKQRLVESDSKAEPQTIRISK  197 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  197 (216)
                      |++.|.+.+.-...-.-.+-+.+-..++.-+..
T Consensus       303 nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES  335 (683)
T KOG1145|consen  303 NLDLLEEAILLLAEVMDLKADPKGPAEGWVIES  335 (683)
T ss_pred             ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEe
Confidence            999999987776665555544444444444433

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=5.8e-15  Score=113.18  Aligned_cols=141  Identities=20%  Similarity=0.238  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc------------------cccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTS------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|.+|+|||||+++|+.......                  .....+.......+.+++  +.+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            489999999999999999874321100                  011223333444555555  689999999998877


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET  158 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      ..+...++.+|++++|+|+++......... +..+..   .+.|.++++||+|....   ...+....+.+..+..++.+
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKL-WEFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence            777888999999999999987654433322 233333   26899999999998542   22334445555555544433


Q ss_pred             e--cCCCCCH
Q 027985          159 S--AKTNFNV  166 (216)
Q Consensus       159 S--a~~~~~i  166 (216)
                      +  ..++.++
T Consensus       152 ~ip~~~~~~~  161 (268)
T cd04170         152 QLPIGEGDDF  161 (268)
T ss_pred             EecccCCCce
Confidence            3  3444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=3.6e-15  Score=116.09  Aligned_cols=153  Identities=20%  Similarity=0.155  Sum_probs=103.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCccccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD-------------------------------SFTTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      -..++++|+|...+|||||+-+|+.+                               ...++.+.+.|++.....+..  
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet--   82 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET--   82 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec--
Confidence            35699999999999999999998532                               112223444455554444444  


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-----IRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                      ..+.+.|+|+|||..|-..+.....++|++|+|+|+.+.+....     ..+....+..... -..+||++||+|..+..
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd  161 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence            44789999999999988888889999999999999987642221     1122223333333 34567788999997643


Q ss_pred             CCCCH---HHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985          137 RAVPT---AKGQELADEYG-----IKFFETSAKTNFNVEQ  168 (216)
Q Consensus       137 ~~~~~---~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (216)
                      +....   .++..+.+..+     +.|+++|+..|+|+.+
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            33222   22333444444     5699999999999754

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=8.1e-16  Score=113.80  Aligned_cols=165  Identities=17%  Similarity=0.246  Sum_probs=107.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEE-EEECCeEEEEEEEeCCCccc-------ccccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRT-IELDGKRIKLQIWDTAGQER-------FRTITTA   83 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~   83 (216)
                      ...+++|+++|.+|+|||||||+|+.....+...-..+.+..... ..+++  -.+.|||+||..+       +......
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            456799999999999999999999965554433222222222222 23344  3799999999544       4455667


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHH--------H
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK------RAVPTAKGQELA--------D  149 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~--------~  149 (216)
                      ++...|++++++++.|+.---+...|.. +.... .+.++++++|.+|....-      .......++.+.        +
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f~~d-Vi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDFLRD-VIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHHHHH-HHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            7888999999999988654333333333 32222 247999999999974321      111111122221        1


Q ss_pred             HhC--CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          150 EYG--IKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       150 ~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ...  .+++.++.+.+.|++++...++..+...
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            111  3788888999999999999999988743

>TIGR00503 prfC peptide chain release factor 3

Probab=99.63  E-value=4.8e-15  Score=122.59  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=78.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------------ccccceeeEEEEEEEEECCeEEEEEEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQIW   69 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~   69 (216)
                      -....+|+|+|.+++|||||+++|+.  +....                    +...+.+.......+.+++  +.+.||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~--~~inli   85 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD--CLVNLL   85 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC--eEEEEE
Confidence            34567999999999999999999852  11100                    0011222233333444444  789999


Q ss_pred             eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      ||||+..+.......++.+|++|+|+|+.+.- ......++.....   .+.|+++++||+|+.
T Consensus        86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             ECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            99999888776677889999999999998641 1223344443333   368999999999983

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.63  E-value=1.6e-15  Score=120.18  Aligned_cols=172  Identities=22%  Similarity=0.146  Sum_probs=126.4

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-----ccc----
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRT----   79 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~----   79 (216)
                      .....++-.++|+|.|++|||||++.++.........+++|...++..+.+  +...++++||||.-.     .+.    
T Consensus       162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmq  239 (620)
T KOG1490|consen  162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQ  239 (620)
T ss_pred             CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHH
Confidence            344667788999999999999999999998888888888887777776655  447899999999321     111    


Q ss_pred             --ccccccccccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--CCCCCCHHHHHHHHHHhCC
Q 027985           80 --ITTAYYRGAMGILLVYDVTD--ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE--SKRAVPTAKGQELADEYGI  153 (216)
Q Consensus        80 --~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~  153 (216)
                        .....++.+  ++|+.|++.  ..+++.....+..+...+. +.|+|+|+||+|+..  +..+...+.++.+....++
T Consensus       240 sITALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v  316 (620)
T KOG1490|consen  240 IITALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV  316 (620)
T ss_pred             HHHHHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence              111233433  788888875  4677777778888888776 689999999999853  1222233445555555568


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          154 KFFETSAKTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      .++++|+.+.+|+.++.....+.+..+..+..
T Consensus       317 ~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~K  348 (620)
T KOG1490|consen  317 KVVQTSCVQEEGVMDVRTTACEALLAARVEQK  348 (620)
T ss_pred             eEEEecccchhceeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888888776666543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.62  E-value=1.2e-15  Score=108.31  Aligned_cols=115  Identities=23%  Similarity=0.417  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccccc---ccccccEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMGI   91 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~   91 (216)
                      -.|+++|+.|+|||+|...|..+...+.....   +... .+.+ ....-.+.++|+|||+........   +...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999988554332221   1111 1222 112237899999999987754444   47889999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027985           92 LLVYDVTD-ESSFNNIRNWMRNIDQH---AADNVNKILVGNKADMDE  134 (216)
Q Consensus        92 i~v~d~~~-~~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~D~~~  134 (216)
                      |||+|... +..+..+.+++..+...   ....+|++|++||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999974 44556665554444332   245789999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=7.2e-15  Score=125.90  Aligned_cols=117  Identities=20%  Similarity=0.143  Sum_probs=85.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+...+|+|+|.+++|||||+++|+....                  ..+.....+.+.....+.+++  .++.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            44678999999999999999999964211                  011244556666666777766  6899999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      +..+...+...++.+|++|+|+|+.+.-..... ..+..+..   .+.|+++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            988877788889999999999999875333222 22333333   3689999999999853

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=8.8e-15  Score=125.39  Aligned_cols=117  Identities=19%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC------------------CccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+...+|+|+|.+++|||||+++|+...-.                  .+.....+.+.....+.+++  ..+.+|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence            445679999999999999999999632110                  01123445556666666766  6899999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      +..+...+...++.+|++++|+|+.+....... ..+..+...   +.|+++++||+|+..
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~D~~~  141 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY---EVPRIAFVNKMDKTG  141 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc---CCCEEEEEECCCCCC
Confidence            988877788889999999999999875444332 233333332   689999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.60  E-value=4.6e-14  Score=112.92  Aligned_cols=83  Identities=23%  Similarity=0.283  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL---------------------D-GKRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   73 (216)
                      ++|+++|.|++|||||+|+|++........++.|.+........                     + .....++|||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988776545565555555543321                     1 1236789999999


Q ss_pred             cc----ccccccccc---cccccEEEEEEECC
Q 027985           74 QE----RFRTITTAY---YRGAMGILLVYDVT   98 (216)
Q Consensus        74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   98 (216)
                      ..    ....+-..+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    222222234   88999999999996

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=3.4e-14  Score=121.72  Aligned_cols=116  Identities=19%  Similarity=0.132  Sum_probs=83.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC---C---------------CccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF---T---------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+...+|+|+|.+++|||||+++|+...-   .               .+.....+.+.....+.+.+  ..+.++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            45677999999999999999999963111   0               01244456666666677766  5899999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      +..+.......++.+|++|+|+|+...-..... ..+..+...   +.|+++++||+|+.
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~~---~~p~iv~vNK~D~~  140 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADKY---KVPRIAFVNKMDRT  140 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHHc---CCCEEEEEECCCCC
Confidence            988766677778899999999999765333332 223333333   67899999999985

>PRK09866 hypothetical protein; Provisional

Probab=99.58  E-value=1.6e-13  Score=113.10  Aligned_cols=108  Identities=18%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             EEEEEeCCCcccc-----ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 027985           65 KLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        65 ~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~  139 (216)
                      ++.|+||||....     .......+..+|+++||+|+....+..+ ....+.+... ....|+++|+||+|+.+. ...
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dr-eed  307 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDR-NSD  307 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCc-ccc
Confidence            6789999996542     2233457889999999999986433332 1223333332 223599999999998532 222


Q ss_pred             CHHHHHHHHHHh----C---CcEEEEecCCCCCHHHHHHHHHH
Q 027985          140 PTAKGQELADEY----G---IKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       140 ~~~~~~~~~~~~----~---~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      ..+.+..+....    .   ..+|++||+.|.|++++++.|..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            344555443221    2   36999999999999999998877

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=6.9e-14  Score=99.62  Aligned_cols=155  Identities=23%  Similarity=0.297  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc---cccEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i   92 (216)
                      -.|+++|+.+||||+|.-.|..+.+....   ..++.....+..+..  .++++|.|||.+.+.-...++.   .+-++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            56899999999999999998877543322   224455555666553  5899999999987765555555   788899


Q ss_pred             EEEECC-ChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCC-CC----HHHHHHH----------------
Q 027985           93 LVYDVT-DESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRA-VP----TAKGQEL----------------  147 (216)
Q Consensus        93 ~v~d~~-~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~-~~----~~~~~~~----------------  147 (216)
                      ||+|.. ......++.+++..+....   ...+|+++..||.|+..+... ..    ..++..+                
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            999874 3344455555444443322   456888889999998443211 00    0001000                


Q ss_pred             --------------HH--HhCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985          148 --------------AD--EYGIKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       148 --------------~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                                    .+  ...+.+.+.|++++ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                          00  12245888999888 999999998765

>PRK12740 elongation factor G; Reviewed

Probab=99.56  E-value=2.4e-14  Score=122.63  Aligned_cols=108  Identities=23%  Similarity=0.198  Sum_probs=77.6

Q ss_pred             EcCCCCcHHHHHHHHhcCCCC------------------CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 027985           21 IGDSGVGKSCLLLRFSDDSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT   82 (216)
Q Consensus        21 ~G~~~sGKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   82 (216)
                      +|.+++|||||+++|+...-.                  .+...+.+.......+.+++  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            599999999999999532110                  01123445555556666666  6899999999988777778


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      ..++.+|++++|+|+++........ .+..+..   .+.|+++|+||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            8899999999999998765544332 2233333   2689999999999853

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.56  E-value=4.6e-14  Score=107.70  Aligned_cols=149  Identities=23%  Similarity=0.195  Sum_probs=106.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------------CccccceeeEEEEEEEEEC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT---------------------------------TSFITTIGIDFKIRTIELD   60 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   60 (216)
                      ..++++.+|.-.-||||||-+|+...-.                                 .+.+.+.|++..+..+..+
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4689999999999999999998643110                                 0123344566655555444


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC
Q 027985           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP  140 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~  140 (216)
                      .  -+|.|.|||||+.|...+......||++|+++|+.  ..+....+....+..... -..+++.+||+||.+..++..
T Consensus        85 K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          85 K--RKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             c--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            3  58999999999999999999999999999999994  334443344455555543 245677789999987665544


Q ss_pred             HHH---HHHHHHHhC---CcEEEEecCCCCCHH
Q 027985          141 TAK---GQELADEYG---IKFFETSAKTNFNVE  167 (216)
Q Consensus       141 ~~~---~~~~~~~~~---~~~~~~Sa~~~~~i~  167 (216)
                      .+.   -..|+.+++   ..++++||..|+|+-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            433   445667777   479999999999874

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.54  E-value=1.3e-13  Score=108.61  Aligned_cols=159  Identities=19%  Similarity=0.227  Sum_probs=114.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC--CCC--------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS--FTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .-+|+|+-.-..|||||+..|+.+.  |..              +.+.+.|+--...-+.+++  +++.|+|||||..|.
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADFG   82 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADFG   82 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCcc
Confidence            3478999999999999999997532  211              2233344333444456666  789999999999999


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------h
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE-------Y  151 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~  151 (216)
                      ......+.-.|++++++|+.+..- ...   .-.+.+....+.+.|+|+||+|.+.+....-.++..++...       +
T Consensus        83 GEVERvl~MVDgvlLlVDA~EGpM-PQT---rFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          83 GEVERVLSMVDGVLLLVDASEGPM-PQT---RFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             chhhhhhhhcceEEEEEEcccCCC-Cch---hhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence            999999999999999999987422 111   12233334447788999999999776655555555555444       4


Q ss_pred             CCcEEEEecCCC----------CCHHHHHHHHHHHHHH
Q 027985          152 GIKFFETSAKTN----------FNVEQVFFSIAREIKQ  179 (216)
Q Consensus       152 ~~~~~~~Sa~~~----------~~i~~l~~~l~~~~~~  179 (216)
                      +++++..|+++|          +++.-||+.|++++..
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            578999999877          4688889888888754

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.53  E-value=1.6e-13  Score=101.46  Aligned_cols=174  Identities=16%  Similarity=0.175  Sum_probs=98.9

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-------ccccceeeEEEEEEEEE-----------------C-----
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-------SFITTIGIDFKIRTIEL-----------------D-----   60 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~-----------------~-----   60 (216)
                      .....++.|+|+|+.|||||||+++|.......       +.+|....-.+...+.+                 +     
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T   93 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT   93 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence            356678999999999999999999996432211       11111111111111111                 1     


Q ss_pred             -------------------CeEEEEEEEeCCCccccc------cccccccc--cccEEEEEEECCCh-hhHHHHHHHHHH
Q 027985           61 -------------------GKRIKLQIWDTAGQERFR------TITTAYYR--GAMGILLVYDVTDE-SSFNNIRNWMRN  112 (216)
Q Consensus        61 -------------------~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~  112 (216)
                                         ...+.+.|+||||+-+.-      .+....+.  .-.+++||+|.... .....+.+.+..
T Consensus        94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA  173 (366)
T KOG1532|consen   94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA  173 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence                               112468999999965421      12222222  24567888887432 222233343333


Q ss_pred             HHHhcCCCCcEEEEEeCCCCCCCCCCCCH-HHHHHH---HH--------------------H-hCCcEEEEecCCCCCHH
Q 027985          113 IDQHAADNVNKILVGNKADMDESKRAVPT-AKGQEL---AD--------------------E-YGIKFFETSAKTNFNVE  167 (216)
Q Consensus       113 l~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~---~~--------------------~-~~~~~~~~Sa~~~~~i~  167 (216)
                      .......+.|+++|.||+|+.+....... .+-+.|   .+                    - .++..+-||+.+|+|++
T Consensus       174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence            33333447999999999999653321110 000000   00                    0 13578999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027985          168 QVFFSIAREIKQRLVE  183 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~~  183 (216)
                      ++|..+-+.+.++..+
T Consensus       254 df~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  254 DFFTAVDESVDEYEEE  269 (366)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999888777665433

>PTZ00258 GTP-binding protein; Provisional

Probab=99.53  E-value=1.9e-13  Score=108.40  Aligned_cols=87  Identities=21%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER   76 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~   76 (216)
                      +...++|+|+|.|++|||||+|+|++........|+.|.+.....+.+.+..               .++.++|+||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            4567899999999999999999999888776667888877777777665432               3589999999432


Q ss_pred             cc-------cccccccccccEEEEEEECC
Q 027985           77 FR-------TITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        77 ~~-------~~~~~~~~~~d~~i~v~d~~   98 (216)
                      -.       ......++.+|++++|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            11       11223567899999999974

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.53  E-value=4.5e-14  Score=92.03  Aligned_cols=138  Identities=24%  Similarity=0.210  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc----cccccccccEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----TTAYYRGAMGI   91 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~~~~~~~~d~~   91 (216)
                      -|++++|+.|+|||||.+.|.+...-  +..+..       ++++++    -.+||||.--....    ......++|++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi   68 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVI   68 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence            47899999999999999999887652  222222       223221    13599994322222    23345689999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF  170 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~  170 (216)
                      ++|-+++++++.-.     ..+....  ..|+|-|++|.|+++   ....+..+.+..+.|. .+|.+|+.++.|+++++
T Consensus        69 ~~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~  138 (148)
T COG4917          69 IYVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELV  138 (148)
T ss_pred             eeeecccCccccCC-----ccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence            99999998755110     1111221  356888999999965   3445667778888885 89999999999999999


Q ss_pred             HHHHHH
Q 027985          171 FSIARE  176 (216)
Q Consensus       171 ~~l~~~  176 (216)
                      ..|...
T Consensus       139 ~~L~~~  144 (148)
T COG4917         139 DYLASL  144 (148)
T ss_pred             HHHHhh
Confidence            987653

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.52  E-value=3.8e-13  Score=101.75  Aligned_cols=167  Identities=14%  Similarity=0.262  Sum_probs=117.4

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      +-...-.|+|+|..++||||||.+|-+..   ...+..+.++....+.-+  +...++.+|-..|......+..+.+...
T Consensus        48 klpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at  124 (473)
T KOG3905|consen   48 KLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT  124 (473)
T ss_pred             cCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence            34456789999999999999999998766   344555555555444332  2336788999989777666666555433


Q ss_pred             ----cEEEEEEECCCh-hhHHHHHHHHHHHHHhcC---------------------------------------------
Q 027985           89 ----MGILLVYDVTDE-SSFNNIRNWMRNIDQHAA---------------------------------------------  118 (216)
Q Consensus        89 ----d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~---------------------------------------------  118 (216)
                          .++|++.|.++| .-++.++.|...+..+..                                             
T Consensus       125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~  204 (473)
T KOG3905|consen  125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA  204 (473)
T ss_pred             CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence                457888999987 445555555433322110                                             


Q ss_pred             ----------------CCCcEEEEEeCCCCCC----------CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985          119 ----------------DNVNKILVGNKADMDE----------SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus       119 ----------------~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                                      -++|+++|++|+|...          +........++.|+..+|..+|.+|+++..||+-+..+
T Consensus       205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY  284 (473)
T KOG3905|consen  205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY  284 (473)
T ss_pred             ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence                            1678999999999721          12223445678888899999999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          173 IAREIKQR  180 (216)
Q Consensus       173 l~~~~~~~  180 (216)
                      |.+..+-.
T Consensus       285 ivhr~yG~  292 (473)
T KOG3905|consen  285 IVHRSYGF  292 (473)
T ss_pred             HHHHhcCc
Confidence            99887643

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.51  E-value=8.4e-13  Score=99.51  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=74.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--c-c-----
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-I-----   80 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~-----   80 (216)
                      ......++|+|+|.+|+|||||+|+|++...... .....+..........++  ..+.+|||||.....  . .     
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~  103 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL  103 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence            3566789999999999999999999998765332 222333444444445555  579999999965431  0 0     


Q ss_pred             --ccccc--ccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 027985           81 --TTAYY--RGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAAD--NVNKILVGNKADMD  133 (216)
Q Consensus        81 --~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~  133 (216)
                        ...++  ...++++||..++... ...+ ...++.+......  -.++++|.||+|..
T Consensus       104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence              11122  2578888887665422 1111 1223333332221  14689999999984

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.50  E-value=5.8e-13  Score=116.65  Aligned_cols=146  Identities=18%  Similarity=0.199  Sum_probs=94.7

Q ss_pred             cHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE----------------EEEEEEeCCCccccccccccccccccE
Q 027985           27 GKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR----------------IKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        27 GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +||||+.++.+........-+.|.......+..+...                -.+.||||||++.+..+....++.+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999877755544444444433333332100                138999999999998877778888999


Q ss_pred             EEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-C--------------CHHHHH----H--
Q 027985           91 ILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-V--------------PTAKGQ----E--  146 (216)
Q Consensus        91 ~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~--------------~~~~~~----~--  146 (216)
                      +++|+|+++   +++++.+.    .+..   .+.|+++|+||+|+.+.... .              ...+..    .  
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999986   34444332    2222   26899999999998531110 0              000000    0  


Q ss_pred             --HHH------------Hh--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          147 --LAD------------EY--GIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       147 --~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                        +..            .+  .++++++||++|+||++|+.+|......
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence              111            11  2589999999999999999887655443

>cd00066 G-alpha G protein alpha subunit

Probab=99.50  E-value=1.4e-12  Score=102.08  Aligned_cols=125  Identities=19%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             EEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCCCcEE
Q 027985           56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNIDQH-AADNVNKI  124 (216)
Q Consensus        56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~p~i  124 (216)
                      .+.+++  +.+.+||++|+......|..++.+++++|||+|+++.          ..+......+..+... .-.+.|++
T Consensus       155 ~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil  232 (317)
T cd00066         155 KFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII  232 (317)
T ss_pred             EEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence            344443  6899999999999999999999999999999999873          3333333334444332 22478999


Q ss_pred             EEEeCCCCCCC--------------CC-CCCHHHHHHHHHH----------hCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          125 LVGNKADMDES--------------KR-AVPTAKGQELADE----------YGIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       125 vv~nK~D~~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      +++||.|+...              .. .-..+.+..|...          ..+..+.++|.+..+++.+|+.+.+.+.+
T Consensus       233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             EEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence            99999996211              11 1233343333322          12456778899999999999999988876


Q ss_pred             HHh
Q 027985          180 RLV  182 (216)
Q Consensus       180 ~~~  182 (216)
                      ...
T Consensus       313 ~~l  315 (317)
T cd00066         313 NNL  315 (317)
T ss_pred             HHh
Confidence            543

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=1.8e-13  Score=117.75  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=79.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcC---------------CCCC-ccccceeeEEE--EEEEEECCeEEEEEEEeCC
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD---------------SFTT-SFITTIGIDFK--IRTIELDGKRIKLQIWDTA   72 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~---------------~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~   72 (216)
                      ..+...+|+|+|..++|||||+++|+..               .+.. +.....++...  ...+.+++..+.+.|||||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP   94 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP   94 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence            4456789999999999999999999742               1111 11112222221  1222344555899999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |+..+.......++.+|++|+|+|+.+.-..... ..+..+..   .+.|+++++||+|...
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH---cCCCEEEEEEChhccc
Confidence            9998877778889999999999999764222221 11222222   2578899999999854

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.47  E-value=1.7e-12  Score=105.38  Aligned_cols=166  Identities=15%  Similarity=0.276  Sum_probs=112.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccc----
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRG----   87 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~----   87 (216)
                      ..-.|+|+|..++||||||.+|.+..   ...++.+.+|....+.-+  +...++.+|...|...+..+....+..    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34689999999999999999987543   345566666666655332  223578999999877777666655543    


Q ss_pred             ccEEEEEEECCChhh-HHHHHHHHHHHHH-------------------------hcC-----------------------
Q 027985           88 AMGILLVYDVTDESS-FNNIRNWMRNIDQ-------------------------HAA-----------------------  118 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s-~~~~~~~~~~l~~-------------------------~~~-----------------------  118 (216)
                      --++|+|+|.+.|-. ++.+..|+..+..                         +..                       
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence            245888999988632 1222222211110                         000                       


Q ss_pred             --------------CCCcEEEEEeCCCCCCC---C-------CCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985          119 --------------DNVNKILVGNKADMDES---K-------RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus       119 --------------~~~p~ivv~nK~D~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                                    -++|++||++|+|....   .       ..+....++.|+..+|+.+|.+|++...+++.|+.+|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                          14799999999997321   1       11333447778888999999999999999999999988


Q ss_pred             HHHHHHHh
Q 027985          175 REIKQRLV  182 (216)
Q Consensus       175 ~~~~~~~~  182 (216)
                      +.++....
T Consensus       261 h~l~~~~f  268 (472)
T PF05783_consen  261 HRLYGFPF  268 (472)
T ss_pred             HHhccCCC
Confidence            88875543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.47  E-value=1.9e-12  Score=99.14  Aligned_cols=124  Identities=19%  Similarity=0.189  Sum_probs=72.5

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc------
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------   81 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------   81 (216)
                      +.+....++|+|+|.+|+||||++|+|++..... +...+.+..........++  ..+.++||||........      
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence            3445678999999999999999999999876522 2222222222223334455  689999999965432111      


Q ss_pred             -cccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027985           82 -TAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDE  134 (216)
Q Consensus        82 -~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~  134 (216)
                       ..++  ...|+++||..++.....+.-...+..+...++.  -.++++|.|+.|..+
T Consensus       110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence             1111  2589999996554321111111222333322211  246899999999753

>smart00275 G_alpha G protein alpha subunit

Probab=99.47  E-value=2.4e-12  Score=101.50  Aligned_cols=130  Identities=18%  Similarity=0.192  Sum_probs=88.3

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCC
Q 027985           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNIDQH-AADN  120 (216)
Q Consensus        52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~  120 (216)
                      +....+.+++  +.+.+||++|+...+..|..++.+++++|||+|+++.          ..+......+..+... .-.+
T Consensus       174 i~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~  251 (342)
T smart00275      174 IQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFAN  251 (342)
T ss_pred             eEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccC
Confidence            3334455554  5789999999999999999999999999999999863          2344444444444332 2347


Q ss_pred             CcEEEEEeCCCCCC--------------CCCCCCHHHHHHHHHH-----h------CCcEEEEecCCCCCHHHHHHHHHH
Q 027985          121 VNKILVGNKADMDE--------------SKRAVPTAKGQELADE-----Y------GIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       121 ~p~ivv~nK~D~~~--------------~~~~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      .|+++++||.|+..              ....-..+.+..|...     .      .+-.+.++|.+..+++.+|+.+.+
T Consensus       252 ~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~  331 (342)
T smart00275      252 TSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKD  331 (342)
T ss_pred             CcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHH
Confidence            89999999999721              1111123333333221     1      144678889999999999999988


Q ss_pred             HHHHHHhh
Q 027985          176 EIKQRLVE  183 (216)
Q Consensus       176 ~~~~~~~~  183 (216)
                      .+.+....
T Consensus       332 ~I~~~~l~  339 (342)
T smart00275      332 IILQRNLK  339 (342)
T ss_pred             HHHHHHHH
Confidence            88876543

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.46  E-value=6.9e-12  Score=91.86  Aligned_cols=154  Identities=21%  Similarity=0.217  Sum_probs=109.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG   87 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   87 (216)
                      .-+|+++|.|++|||||+..++..........+++.+.....+++++  .++++.|.||.-+       .........+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            56899999999999999999988776666666677788888999998  5899999999432       23344556788


Q ss_pred             ccEEEEEEECCChhhHH-HHHHHHHHHHHhcCC-----------------------------------------------
Q 027985           88 AMGILLVYDVTDESSFN-NIRNWMRNIDQHAAD-----------------------------------------------  119 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~-----------------------------------------------  119 (216)
                      +|++++|.|++..+.-. .+...++.+......                                               
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            99999999997643222 222222322211111                                               


Q ss_pred             ------------------CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          120 ------------------NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       120 ------------------~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                                        -++++.|-||+|.      ++.+++..+++..+  -+-+|+....|++.+++.|.+.+.
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~------vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ------VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccce------ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence                              1345667777773      55677777777666  355677788899999999888774

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.46  E-value=6.3e-13  Score=114.63  Aligned_cols=120  Identities=20%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC--C--------------ccccceeeEEEEEEE--EECCeEEEEEEEeCC
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT--T--------------SFITTIGIDFKIRTI--ELDGKRIKLQIWDTA   72 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~   72 (216)
                      ..+..-+|+|+|..++|||||+.+|+...-.  .              +.....++......+  .+++..+.+.|+|||
T Consensus        16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP   95 (731)
T PRK07560         16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP   95 (731)
T ss_pred             chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence            3456678999999999999999999743211  0              011112222222222  234445789999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |+..+.......++.+|++|+|+|+...-..... ..+......   +.|.++++||+|...
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~---~~~~iv~iNK~D~~~  153 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE---RVKPVLFINKVDRLI  153 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc---CCCeEEEEECchhhc
Confidence            9998887778889999999999999765332222 222222222   467899999999753

>TIGR00101 ureG urease accessory protein UreG

Probab=99.45  E-value=2.6e-12  Score=93.90  Aligned_cols=100  Identities=18%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE--EEEEeCCCCCCCCCCCCH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK--ILVGNKADMDESKRAVPT  141 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~--ivv~nK~D~~~~~~~~~~  141 (216)
                      ..+.++++.|.........   .-++.+|.|+|+.+......  .+..        .+..  ++++||+|+.+. .....
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~-~~~~~  157 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPM-VGADL  157 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhcccc-ccccH
Confidence            4667788888432222221   12677999999986555321  1111        2223  889999999641 11223


Q ss_pred             HHHHHHHHH--hCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          142 AKGQELADE--YGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       142 ~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      +......+.  .+.+++++|+++|+|++++|++|.+.+
T Consensus       158 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       158 GVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            333444443  347999999999999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.45  E-value=2.4e-12  Score=101.07  Aligned_cols=83  Identities=19%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR--   78 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~--   78 (216)
                      ++|+++|.|++|||||+|+|++........|+.|.+.....+.+.+..               ..+.++|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999988655666777777776666665532               258999999943211  


Q ss_pred             --c---ccccccccccEEEEEEECC
Q 027985           79 --T---ITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        79 --~---~~~~~~~~~d~~i~v~d~~   98 (216)
                        .   .....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1   1223467899999999984

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.43  E-value=2.7e-12  Score=95.00  Aligned_cols=162  Identities=20%  Similarity=0.225  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------c----c
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------T----T   82 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~----~   82 (216)
                      ++|+|+|.+|+||||++|.+++.......  ....+..........++  ..+.++||||.......       .    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999988764432  22333444455556777  57899999994321111       1    1


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCC---C---CHHHHHHHHHHhCCc
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESKRA---V---PTAKGQELADEYGIK  154 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~---~---~~~~~~~~~~~~~~~  154 (216)
                      ......+++++|+.... -+..+ ...+..+...++.  -..++||.|..|-......   +   ....++.+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            12356899999999873 22222 1222233332221  1357888888885432220   0   012355566667778


Q ss_pred             EEEEecC------CCCCHHHHHHHHHHHHHHHH
Q 027985          155 FFETSAK------TNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       155 ~~~~Sa~------~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ++.++.+      ....+.+|++.+-+.+.++.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8888766      23457788887777766553

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK13768 GTPase; Provisional

Probab=99.41  E-value=9.2e-13  Score=99.88  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=69.5

Q ss_pred             EEEEEeCCCcccc---ccccccccc---c--ccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           65 KLQIWDTAGQERF---RTITTAYYR---G--AMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        65 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      .+.+||+||+.+.   ...+..+++   .  .+++++|+|+.......+.. .++..+......+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            6899999997653   233322222   2  78999999996544333322 2222222211236899999999998542


Q ss_pred             CCC-CCHHHHH------------------------HHHHHhC--CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          136 KRA-VPTAKGQ------------------------ELADEYG--IKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       136 ~~~-~~~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ... .......                        ...+..+  ..++++|+++++|+++++++|.+.+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            211 0000000                        1122334  58899999999999999999988763

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.41  E-value=1.9e-12  Score=95.56  Aligned_cols=158  Identities=18%  Similarity=0.203  Sum_probs=87.9

Q ss_pred             ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-C-----------ccccceeeEEEEEEEEECC-------------
Q 027985            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-T-----------SFITTIGIDFKIRTIELDG-------------   61 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~-------------   61 (216)
                      |...+......|.|+|..|+|||||+++++..... .           ..+...-.......+...+             
T Consensus        14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~   93 (207)
T TIGR00073        14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAH   93 (207)
T ss_pred             HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHH
Confidence            34445667899999999999999999998643110 0           0000000000000011110             


Q ss_pred             -------eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           62 -------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        62 -------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                             ....+.|+|+.|.-.. .  ..+....+..+.|+|+.+......  .   .....   ..|.++++||+|+.+
T Consensus        94 ~l~~~~~~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~~--~---~~~~~---~~a~iiv~NK~Dl~~  162 (207)
T TIGR00073        94 ALEDLPLDDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKPL--K---YPGMF---KEADLIVINKADLAE  162 (207)
T ss_pred             HHHHhccCCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchhh--h---hHhHH---hhCCEEEEEHHHccc
Confidence                   0136778888882111 1  111123455567888865432111  1   11111   356799999999964


Q ss_pred             CCCCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHHH
Q 027985          135 SKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      .. ...........+..+  .+++++||++++|++++|+++.+.
T Consensus       163 ~~-~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       163 AV-GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             cc-hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            21 122233333344443  789999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.41  E-value=1.9e-12  Score=113.06  Aligned_cols=120  Identities=19%  Similarity=0.182  Sum_probs=82.4

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEEC-------------
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELD-------------   60 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~-------------   60 (216)
                      ...+...+|+|+|..++|||||+.+|+...-                ..+.....+++.....+.+.             
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER   93 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence            4567788999999999999999999974321                11112222333222233331             


Q ss_pred             -CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        61 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                       +..+.+.|+|||||..|.......++.+|++|+|+|+.+.-......-| ..+.   ..++|+++++||+|..
T Consensus        94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence             1246889999999999988888889999999999999875433332222 2232   2378999999999985

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.41  E-value=1.8e-12  Score=97.85  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=76.0

Q ss_pred             cccccccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (216)
                      +++..+...+++++|++++|+|+.++. ++..+.+|+..+..   .++|+++|+||+|+.+ ...+..+..+.+ ...+.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~-~~~~~~~~~~~~-~~~g~   98 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLD-DEDMEKEQLDIY-RNIGY   98 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCC-CHHHHHHHHHHH-HHCCC
Confidence            566777778999999999999999887 89999999876654   3789999999999954 223333444444 35788


Q ss_pred             cEEEEecCCCCCHHHHHHHHH
Q 027985          154 KFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      .++++||++|+|++++|+.+.
T Consensus        99 ~v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157        99 QVLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             eEEEEecCCchhHHHHHhhhc
Confidence            999999999999999998875

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.39  E-value=2.2e-11  Score=98.59  Aligned_cols=162  Identities=20%  Similarity=0.290  Sum_probs=117.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....+++.|+|+.++|||.|++.|+++.+......+....+....+...+....+.+-|.+-. ....+...- ..||+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            4557899999999999999999999998887655555555555566655566556777777654 222212112 77999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQV  169 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l  169 (216)
                      ++++||.+++.+++.+...++.....  ...|+++|++|+|+.+...+..... .+++.++++ ..+.+|.++.-. .++
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~l  574 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NEL  574 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chH
Confidence            99999999999999887765544333  4799999999999965444444444 889999997 456777774333 788


Q ss_pred             HHHHHHHHH
Q 027985          170 FFSIAREIK  178 (216)
Q Consensus       170 ~~~l~~~~~  178 (216)
                      |..|...+.
T Consensus       575 f~kL~~~A~  583 (625)
T KOG1707|consen  575 FIKLATMAQ  583 (625)
T ss_pred             HHHHHHhhh
Confidence            988877765

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.38  E-value=8.2e-13  Score=103.74  Aligned_cols=165  Identities=12%  Similarity=0.176  Sum_probs=81.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-cccc-ce-eeEEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFIT-TI-GIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAY   84 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~   84 (216)
                      ..+++|+|+|.+|+|||||||+|.+-.... ..-+ +. .++.....+..... -++.+||.||......     +....
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            357999999999999999999997633211 1111 11 01111122222221 2699999999543221     12224


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC--CCC----CCCCCHH----HHHHHH-HH---
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM--DES----KRAVPTA----KGQELA-DE---  150 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~--~~~----~~~~~~~----~~~~~~-~~---  150 (216)
                      +...|.+|++.+..  -+..++ .....+...   ++|+.+|-+|+|.  .+.    ......+    .++..+ +.   
T Consensus       112 ~~~yD~fiii~s~r--f~~ndv-~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  112 FYRYDFFIIISSER--FTENDV-QLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GGG-SEEEEEESSS----HHHH-HHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             ccccCEEEEEeCCC--CchhhH-HHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            66788777766542  221221 222334443   7899999999995  111    1112221    222222 11   


Q ss_pred             hCC---cEEEEecCCC--CCHHHHHHHHHHHHHHHHhhh
Q 027985          151 YGI---KFFETSAKTN--FNVEQVFFSIAREIKQRLVES  184 (216)
Q Consensus       151 ~~~---~~~~~Sa~~~--~~i~~l~~~l~~~~~~~~~~~  184 (216)
                      .++   .+|.+|+.+-  .++..|.+.|.+.+..++++.
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~  224 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA  224 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence            232   6899998764  568889999988888776654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.38  E-value=1.8e-11  Score=95.50  Aligned_cols=104  Identities=18%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTA  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~  142 (216)
                      +.+.|+||+|......   .....+|.+++|.+......+..++.-   +.     ...-++|+||+|+...... ....
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhHHHHHHH
Confidence            6789999999653222   246679999999764434444333221   11     1223899999998542210 1111


Q ss_pred             HHHHHHHH-------hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          143 KGQELADE-------YGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       143 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      +++.....       +..+++.+||.++.|++++++.|.+++.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22222221       1147999999999999999999998765

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.2e-11  Score=100.14  Aligned_cols=153  Identities=19%  Similarity=0.161  Sum_probs=103.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCccccceeeEEEEEEEEE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIEL   59 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   59 (216)
                      .+-..+.++|+|...+|||||+.+|+...                               ..++...+.+.+....  .+
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~--~f  250 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT--WF  250 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE--EE
Confidence            44467999999999999999999985221                               1122334444444444  44


Q ss_pred             CCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      +.....++|+|+|||..|.........++|++|+|+|++-.+....      .++ ...+.+..+ -..++|++||+|+.
T Consensus       251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lg-i~qlivaiNKmD~V  328 (603)
T KOG0458|consen  251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLG-ISQLIVAINKMDLV  328 (603)
T ss_pred             ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcC-cceEEEEeeccccc
Confidence            4455789999999998888888888899999999999976322111      222 233333333 34578888999997


Q ss_pred             CCCCCC---CHHHHHHHH-HHhC-----CcEEEEecCCCCCHH
Q 027985          134 ESKRAV---PTAKGQELA-DEYG-----IKFFETSAKTNFNVE  167 (216)
Q Consensus       134 ~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~  167 (216)
                      +.....   ....+..|. +..|     +.|++||+..|+|+-
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence            644332   233455555 4444     479999999999864

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.37  E-value=1.4e-12  Score=97.69  Aligned_cols=113  Identities=17%  Similarity=0.197  Sum_probs=59.8

Q ss_pred             EEEEEeCCCcccccccccccc--------ccccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      .+.|+|||||.++-..+....        ...-++++++|...... ...+..++..+......+.|.|.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999877554333222        33456888888864332 233344444444444347999999999999651


Q ss_pred             CCC------C------------CHHHHHHHHHHh---C-C-cEEEEecCCCCCHHHHHHHHHHHH
Q 027985          136 KRA------V------------PTAKGQELADEY---G-I-KFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       136 ~~~------~------------~~~~~~~~~~~~---~-~-~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ...      .            .....+.++.-.   + . .++++|+.+++|+.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            100      0            011111222222   2 3 799999999999999999876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.37  E-value=4.7e-12  Score=110.44  Aligned_cols=118  Identities=20%  Similarity=0.195  Sum_probs=79.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC----------------CccccceeeEEEEEEEEEC--------CeEEEEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ   67 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~   67 (216)
                      .+...+|+|+|..++|||||+++|+...-.                .+.....++......+.+.        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            455669999999999999999999752210                0111222222222233332        1246799


Q ss_pred             EEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      |+||||+..+.......++.+|++|+|+|+.+.-.... ...+..+...   +.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence            99999999887777888999999999999987533222 2223333332   68999999999985

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.37  E-value=9.9e-12  Score=84.01  Aligned_cols=114  Identities=31%  Similarity=0.353  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccc-cceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +........+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997777754332 2222                           222334456778889999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      ++..+.++++.+  |...+........|.++++||.|+.+.. .+..+...        .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999888766  7666665555568889999999984422 33332222        35567888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.37  E-value=4.5e-11  Score=94.21  Aligned_cols=153  Identities=17%  Similarity=0.223  Sum_probs=92.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC----CCC------------Cccccc---eeeEEEE---EEEEE---CCeEEEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD----SFT------------TSFITT---IGIDFKI---RTIEL---DGKRIKLQ   67 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~   67 (216)
                      ...+.|.|+|+.++||||||++|++.    ...            +++.++   +|++...   .-+.+   ++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            45689999999999999999999988    222            112233   3333322   11222   34446899


Q ss_pred             EEeCCCccccc--------c-----------c----------cccccc-cccEEEEEE-ECC--C--hhhHHH-HHHHHH
Q 027985           68 IWDTAGQERFR--------T-----------I----------TTAYYR-GAMGILLVY-DVT--D--ESSFNN-IRNWMR  111 (216)
Q Consensus        68 i~D~~G~~~~~--------~-----------~----------~~~~~~-~~d~~i~v~-d~~--~--~~s~~~-~~~~~~  111 (216)
                      ++|++|...-.        .           .          ....+. .+++.|+|. |.+  +  ++.+.. =.+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999932110        1           0          112344 789999988 663  1  122222 234556


Q ss_pred             HHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHH
Q 027985          112 NIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT--NFNVEQVFF  171 (216)
Q Consensus       112 ~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~l~~  171 (216)
                      .+...   ++|+++|+||.|...   ....+..+.+..+++++++.+|+.+  .+.|..+++
T Consensus       175 eLk~~---~kPfiivlN~~dp~~---~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~  230 (492)
T TIGR02836       175 ELKEL---NKPFIILLNSTHPYH---PETEALRQELEEKYDVPVLAMDVESMRESDILSVLE  230 (492)
T ss_pred             HHHhc---CCCEEEEEECcCCCC---chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHH
Confidence            66655   799999999999421   1244555667777888888888754  334444443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=1.2e-12  Score=98.95  Aligned_cols=169  Identities=17%  Similarity=0.173  Sum_probs=114.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEEE------------------C------CeEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIEL------------------D------GKRIK   65 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~------------------~------~~~~~   65 (216)
                      ...++|.++|.-..|||||.++|.+-   .+.++.....++..-+....+                  .      .-.-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            56799999999999999999999753   222222222222211111100                  0      01136


Q ss_pred             EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHH
Q 027985           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKG  144 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~  144 (216)
                      +.|+|.|||+-..........-.|++++|++++.+..-...++.+..+....  -..+++|-||+|+...++ ....+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8999999999877767667777899999999988644444444444454443  246788899999965332 2345667


Q ss_pred             HHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          145 QELADEY---GIKFFETSAKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       145 ~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      +.|.+-.   +.+++++||..+.|||-|++.|.+.+..-.++
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence            7776643   36899999999999999999998887644333

>cd01882 BMS1 Bms1

Probab=99.36  E-value=1.8e-11  Score=91.32  Aligned_cols=142  Identities=14%  Similarity=0.162  Sum_probs=82.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ...+..|+|+|.+|+|||||++.+.+...........+. +  ......+  .++.++|+||..   .......+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~~~~~--~~i~~vDtPg~~---~~~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVVTGKK--RRLTFIECPNDI---NAMIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEEecCC--ceEEEEeCCchH---HHHHHHHHhcCEE
Confidence            345678999999999999999999865221111111110 1  1112223  478999999854   1122346789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCCC--CHHHHHH-HHHHh--CCcEEEEecCCCCC
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-ILVGNKADMDESKRAV--PTAKGQE-LADEY--GIKFFETSAKTNFN  165 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~~  165 (216)
                      ++|+|+........ ...+..+...   +.|. ++|+||.|+.+.....  ....++. +....  +.+++.+||+++-.
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            99999975433222 2233333332   5675 4599999986422111  1122222 33222  36899999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=8.4e-12  Score=103.40  Aligned_cols=164  Identities=18%  Similarity=0.177  Sum_probs=107.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC------------Ce----EEEEEEEeCCCccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~G~~~~~   78 (216)
                      -.-++|+|.-.+|||-|+..+.+..+.....-+.+..+....+...            ++    .-.+.++|||||+.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            3456899999999999999998766654433333222221111111            00    0137889999999999


Q ss_pred             cccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-----C-------CH--
Q 027985           79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-----V-------PT--  141 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-----~-------~~--  141 (216)
                      .+.......||++|+|+|+-.   +++++.+    +.++.   .+.|+||.+||+|....-..     +       ..  
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            999999999999999999864   3444432    22333   37899999999996331000     0       00  


Q ss_pred             ---------HHHHHHHHH----------h--C--CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          142 ---------AKGQELADE----------Y--G--IKFFETSAKTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       142 ---------~~~~~~~~~----------~--~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                               ..+..|+.+          .  +  +.++++||..|+||.+|+.+|++.......+..
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl  694 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL  694 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence                     011111110          0  1  468999999999999999999998877766553

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.2e-11  Score=94.49  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=65.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC----------------eEEEEEEEeCCCc----
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG----------------KRIKLQIWDTAGQ----   74 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~----   74 (216)
                      .+++.|+|.|++|||||.|+++.........|+.|++.+.......+                ....+.++|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998887667788888888777665532                1246899999992    


Q ss_pred             ---cccccccccccccccEEEEEEECCC
Q 027985           75 ---ERFRTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        75 ---~~~~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                         +.........+|++|+++.|+++.+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence               2233334456899999999999864

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.5e-11  Score=92.75  Aligned_cols=163  Identities=18%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc-------CCCCCccccceeeEEEEEEEEE-------CCeEEEEEEEeCCCccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSD-------DSFTTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~   78 (216)
                      .-.+++.++|.-.||||||.++|..       ...+++.+...+.+.....+..       .++.+++.++|.|||...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            3459999999999999999999853       2223334444455544444433       3445789999999997665


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCCCCH-HHHHHHHHHh-----
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPT-AKGQELADEY-----  151 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~~~~~~-~~~~~~~~~~-----  151 (216)
                      ........-.|..++|+|+.....-+...  ...+....+  ...|+|+||.|...+ ++.... ...+...+.+     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAE--cLiig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAE--CLIIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccch--hhhhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            55555556679999999997532222111  112333333  346888899887443 222111 1122222221     


Q ss_pred             --CCcEEEEecCCC----CCHHHHHHHHHHHHHH
Q 027985          152 --GIKFFETSAKTN----FNVEQVFFSIAREIKQ  179 (216)
Q Consensus       152 --~~~~~~~Sa~~~----~~i~~l~~~l~~~~~~  179 (216)
                        +.+++++|+..|    ++|.+|.+.|.+.+.+
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence              268999999999    6777777777666653

>cd01900 YchF YchF subfamily

Probab=99.35  E-value=6.3e-12  Score=95.66  Aligned_cols=81  Identities=17%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccccc----
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR----   78 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~----   78 (216)
                      |+++|.|++|||||+|+|++........|+.|.+.....+.+.+..               ..+.++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999988866667888877777777766532               259999999943211    


Q ss_pred             c---ccccccccccEEEEEEECC
Q 027985           79 T---ITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        79 ~---~~~~~~~~~d~~i~v~d~~   98 (216)
                      .   .....++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            1   1222467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.35  E-value=9.2e-12  Score=88.16  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEE---------------EEEEEC-C-----------------
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKI---------------RTIELD-G-----------------   61 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~-~-----------------   61 (216)
                      .+.|.|.|++|||||+|+..++..-.......-.+.+.+.               ..+... +                 
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            5899999999999999998876432222111111111111               001111 0                 


Q ss_pred             --eEEEEEEEeCCCcccccccccccccccc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCC
Q 027985           62 --KRIKLQIWDTAGQERFRTITTAYYRGAM-GILLVYDVTDESSFNNIRNWMRNIDQHAADN--VNKILVGNKADMDESK  136 (216)
Q Consensus        62 --~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~  136 (216)
                        ..+.+.|++..|+    .....-+.-.| .-|+|+|+...+...          .+..+.  .-=++|+||.|+.+ .
T Consensus        93 ~~~~~Dll~iEs~GN----L~~~~sp~L~d~~~v~VidvteGe~~P----------~K~gP~i~~aDllVInK~DLa~-~  157 (202)
T COG0378          93 DFPDLDLLFIESVGN----LVCPFSPDLGDHLRVVVIDVTEGEDIP----------RKGGPGIFKADLLVINKTDLAP-Y  157 (202)
T ss_pred             cCCcCCEEEEecCcc----eecccCcchhhceEEEEEECCCCCCCc----------ccCCCceeEeeEEEEehHHhHH-H
Confidence              0034555555551    11111122233 789999997654311          110000  11288999999965 2


Q ss_pred             CCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          137 RAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      -..+.+....-+++.+  .+++++|.++|+|++++++|+....
T Consensus       158 v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         158 VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            2333344444444443  7999999999999999999987654

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.34  E-value=3.7e-12  Score=92.04  Aligned_cols=146  Identities=21%  Similarity=0.306  Sum_probs=98.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh-cCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----ccccccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS-DDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA   88 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~   88 (216)
                      .-||+++|.+|+|||++=..+. +........++.++++......+-|. +.+.+||.+|++.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            3589999999999999855443 23223344566667777777777654 68999999998843     23456789999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHH---HHHHhcCCCCcEEEEEeCCCCCCCCCC-C----CHHHHHHHHHHhCCcEEEEec
Q 027985           89 MGILLVYDVTDESSFNNIRNWMR---NIDQHAADNVNKILVGNKADMDESKRA-V----PTAKGQELADEYGIKFFETSA  160 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~---~l~~~~~~~~p~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      +++++|||+...+-..++..+..   .+.++ .+...+++.+.|+|+...... .    ..+....+....++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999988777666665544   33443 335778888999999642221 1    122233333344567788875


Q ss_pred             CC
Q 027985          161 KT  162 (216)
Q Consensus       161 ~~  162 (216)
                      .+
T Consensus       162 wD  163 (295)
T KOG3886|consen  162 WD  163 (295)
T ss_pred             hh
Confidence            54

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.33  E-value=1.4e-11  Score=94.48  Aligned_cols=141  Identities=21%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---ccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---RTI   80 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~~~   80 (216)
                      ..++|+|+|.+|+|||||||.|++.......          ..+.........+.-++..+++.|+||||....   ...
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999876553321          123334444445566778899999999992210   000


Q ss_pred             c----------------------cccc--ccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           81 T----------------------TAYY--RGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        81 ~----------------------~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      |                      ...+  ...|+++|.++.+... .-.++    ..+... ...+++|-|+.|.|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~L-s~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRL-SKRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHH-TTTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHh-cccccEEeEEecccccCH
Confidence            0                      0001  2478899999976522 11122    222222 235889999999997431


Q ss_pred             -CCCCCHHHHHHHHHHhCCcEEEEe
Q 027985          136 -KRAVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus       136 -~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                       +....+..+..-.+..++.+|...
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHHcCceeeccc
Confidence             111223334444455666666544

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.31  E-value=2.2e-11  Score=86.87  Aligned_cols=63  Identities=25%  Similarity=0.335  Sum_probs=43.4

Q ss_pred             EEEEEeCCCccc----cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027985           65 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA  130 (216)
Q Consensus        65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  130 (216)
                      .+.|+|+||...    ....+..++..+|++|||.++.....-.....+.+.....   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            479999999543    2355667789999999999998865555554444444333   34589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=5.1e-11  Score=93.91  Aligned_cols=152  Identities=22%  Similarity=0.176  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      -|+..|.-..|||||++.+++..-   .+....+.+.+.....+..++  ..+.|+|.||++.+-......+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            477889999999999999987543   556677777777777777666  489999999999988778888889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh---CCcEEEEecCCCCCHH
Q 027985           94 VYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY---GIKFFETSAKTNFNVE  167 (216)
Q Consensus        94 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~  167 (216)
                      |++.++   +++.+.+    . +..... ....++|+||+|..+..  ...+.++.+....   +.++|.+|+.+|+||+
T Consensus        80 vV~~deGl~~qtgEhL----~-iLdllg-i~~giivltk~D~~d~~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~  151 (447)
T COG3276          80 VVAADEGLMAQTGEHL----L-ILDLLG-IKNGIIVLTKADRVDEA--RIEQKIKQILADLSLANAKIFKTSAKTGRGIE  151 (447)
T ss_pred             EEeCccCcchhhHHHH----H-HHHhcC-CCceEEEEeccccccHH--HHHHHHHHHHhhcccccccccccccccCCCHH
Confidence            999964   3444433    2 222222 23459999999987632  1222223333222   3578999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          168 QVFFSIAREIK  178 (216)
Q Consensus       168 ~l~~~l~~~~~  178 (216)
                      +|.+.|.+...
T Consensus       152 ~Lk~~l~~L~~  162 (447)
T COG3276         152 ELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHhhh
Confidence            99999998885

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.28  E-value=2.6e-10  Score=88.67  Aligned_cols=133  Identities=18%  Similarity=0.217  Sum_probs=90.2

Q ss_pred             eEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh-------hHHHHHHHHHHHHHh----cC
Q 027985           50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWMRNIDQH----AA  118 (216)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~----~~  118 (216)
                      .......+.+.+  ..+.++|++|+.....-|.+.+.+++++|+|+++++.+       ....+.+-+..+...    .-
T Consensus       183 ~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F  260 (354)
T KOG0082|consen  183 TGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF  260 (354)
T ss_pred             CCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence            445555666666  68999999999998999999999999999999987632       222333322223222    22


Q ss_pred             CCCcEEEEEeCCCCCC--------------CCCCCCHHHHHHHHHHh----------CCcEEEEecCCCCCHHHHHHHHH
Q 027985          119 DNVNKILVGNKADMDE--------------SKRAVPTAKGQELADEY----------GIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus       119 ~~~p~ivv~nK~D~~~--------------~~~~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      .+.++++++||.|+-+              ....-..+++..+....          .+-++.+.|.+..+|+.+|....
T Consensus       261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            4689999999999822              12222333444443221          13467778899999999999999


Q ss_pred             HHHHHHHhhh
Q 027985          175 REIKQRLVES  184 (216)
Q Consensus       175 ~~~~~~~~~~  184 (216)
                      +.+.++..+.
T Consensus       341 d~Ii~~nlk~  350 (354)
T KOG0082|consen  341 DTIIQNNLKD  350 (354)
T ss_pred             HHHHHHHHHH
Confidence            9888776543

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.27  E-value=6.2e-12  Score=95.22  Aligned_cols=157  Identities=17%  Similarity=0.147  Sum_probs=106.2

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRT   79 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~   79 (216)
                      ++......-|.|+|..++||||||++|++....+...-+.|.+..........+. .+.+.||-|.-         .|..
T Consensus       172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A  250 (410)
T KOG0410|consen  172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA  250 (410)
T ss_pred             ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH
Confidence            3455566788999999999999999999777766666667777776666666553 67788999932         1222


Q ss_pred             ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcE
Q 027985           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN----KILVGNKADMDESKRAVPTAKGQELADEYGIKF  155 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  155 (216)
                       .......+|+++.|.|++.|+.-+.-..-+..+....-...|    ++=|=||.|..+....         .++++  .
T Consensus       251 -TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~  318 (410)
T KOG0410|consen  251 -TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--D  318 (410)
T ss_pred             -HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccCC--c
Confidence             223467899999999999987655544444444443221223    3445678876332111         12233  6


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 027985          156 FETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      +.+|+.+|+|++++...+-..+.
T Consensus       319 v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  319 VGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             cccccccCccHHHHHHHHHHHhh
Confidence            88999999999999988777665

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=9.3e-11  Score=99.41  Aligned_cols=130  Identities=19%  Similarity=0.182  Sum_probs=93.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+..-+|.|+|+-.+|||||..+++...-                  ..+...+.|+......+.+.+ .+.++|+||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            66778999999999999999999863211                  011234445666666666664 36899999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE  146 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  146 (216)
                      |-.|.......++-+|++|+|+|+.+.-..+.-.-|.+ ...   .++|.++++||+|..........++++.
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~~---~~vp~i~fiNKmDR~~a~~~~~~~~l~~  154 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-ADK---YGVPRILFVNKMDRLGADFYLVVEQLKE  154 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hhh---cCCCeEEEEECccccccChhhhHHHHHH
Confidence            99999999999999999999999987543333333333 222   3789999999999866554444444443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.22  E-value=2.4e-10  Score=95.04  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=73.2

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------cc--
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TI--   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~--   80 (216)
                      +-+..++|+|+|.+|+||||++|.|++... ........+..........++  ..+.|+||||.....       .+  
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence            345678999999999999999999998764 333222223233223334455  579999999955321       11  


Q ss_pred             -cccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027985           81 -TTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDE  134 (216)
Q Consensus        81 -~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~  134 (216)
                       ...++.  ..|++|||..+........-..++..+...++.  -..+|||.|+.|..+
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence             111222  479999998875332211112334444443332  145788999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.20  E-value=1.6e-10  Score=89.92  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC-HH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-TA  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~  142 (216)
                      +.+.|+||+|.....   ...+..+|.++++...   ++...+......+.     ..|.++|+||+|+........ ..
T Consensus       127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence            678999999954221   2245667877777543   33333333322221     467799999999864221100 00


Q ss_pred             ----HHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          143 ----KGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       143 ----~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                          ....+...   +..+++++||++++|+++++++|.+.+.
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                01111111   1236899999999999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.18  E-value=3e-10  Score=87.79  Aligned_cols=118  Identities=22%  Similarity=0.304  Sum_probs=75.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---   77 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---   77 (216)
                      +..-.+.|+++|+.|+|||||+|+|++......          ..++..+..+...+.-++..+++.++||||.-.+   
T Consensus        19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence            345679999999999999999999987633222          2345556666666777888899999999992211   


Q ss_pred             ccccc----------------------c-cc--ccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           78 RTITT----------------------A-YY--RGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        78 ~~~~~----------------------~-~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      ...|.                      . .+  ...|+++|.+..+.. .+..+. ..+..+.    ..+.+|-|+.|+|
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD  173 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKAD  173 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccc
Confidence            11111                      0 11  136778888876532 222211 1222233    2577889999999


Q ss_pred             CC
Q 027985          132 MD  133 (216)
Q Consensus       132 ~~  133 (216)
                      +.
T Consensus       174 ~l  175 (373)
T COG5019         174 TL  175 (373)
T ss_pred             cC
Confidence            74

>smart00053 DYNc Dynamin, GTPase

Probab=99.14  E-value=5.4e-10  Score=83.55  Aligned_cols=68  Identities=16%  Similarity=0.224  Sum_probs=41.4

Q ss_pred             EEEEEEeCCCcccc-------------ccccccccc-cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985           64 IKLQIWDTAGQERF-------------RTITTAYYR-GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK  129 (216)
Q Consensus        64 ~~~~i~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  129 (216)
                      ..+.|+|+||....             ..+...+++ ..+++++|+|+...-.-.........+.   ..+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            46899999996421             122334556 4568999998864322222222222232   336899999999


Q ss_pred             CCCCC
Q 027985          130 ADMDE  134 (216)
Q Consensus       130 ~D~~~  134 (216)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99854

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.14  E-value=2.6e-10  Score=86.98  Aligned_cols=55  Identities=18%  Similarity=0.129  Sum_probs=38.4

Q ss_pred             CcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHH
Q 027985          121 VNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       121 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      ..-++|+||+|+.+.. ....+......+..  +..++.+|+++|+|++++++||...
T Consensus       231 ~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4559999999996421 11222333333333  3789999999999999999999764

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1e-09  Score=85.45  Aligned_cols=147  Identities=20%  Similarity=0.269  Sum_probs=88.5

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---   77 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---   77 (216)
                      .++...|.++++|+.|.|||||||.|+...+..         ....+..+......+.-+|..++++++||||....   
T Consensus        16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn   95 (366)
T KOG2655|consen   16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN   95 (366)
T ss_pred             HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence            355667999999999999999999998764422         12224455556666666788899999999992210   


Q ss_pred             cccc----------------------ccccc--cccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           78 RTIT----------------------TAYYR--GAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        78 ~~~~----------------------~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                      ...|                      ...+.  ..++++|.+..+.. .+..+. ..+..+.    ..+.+|-|+.|+|.
T Consensus        96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~  170 (366)
T KOG2655|consen   96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADT  170 (366)
T ss_pred             cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeecccc
Confidence            1111                      11122  47888888876542 111111 1122232    35788999999997


Q ss_pred             CCC-CCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985          133 DES-KRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus       133 ~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      ... ........+.......++.+|.....
T Consensus       171 lT~~El~~~K~~I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  171 LTKDELNQFKKRIRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcceecCCCC
Confidence            431 11222334444455566776666543

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=8.2e-10  Score=80.57  Aligned_cols=147  Identities=20%  Similarity=0.261  Sum_probs=84.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccc---ccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---FRT   79 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~~~   79 (216)
                      ....|+|+|+|++|.|||||+|+|+......         ....+..+......+.-++..+++.++||||...   ...
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            3456999999999999999999997533311         1223334444445566677778999999999211   111


Q ss_pred             cc-----------------------cccccc--ccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           80 IT-----------------------TAYYRG--AMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        80 ~~-----------------------~~~~~~--~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      .|                       ...+.+  .++++|.+..+.. ++..+. +.+..+    ..-+.+|-|+-|.|..
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrL----t~vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRL----TEVVNVVPVIAKADTL  197 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHH----hhhheeeeeEeecccc
Confidence            11                       112333  5666777766542 222111 112222    2246778899999964


Q ss_pred             CC-CCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985          134 ES-KRAVPTAKGQELADEYGIKFFETSAKTN  163 (216)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      .- ++....+.++.-...+++.+++-.+.+-
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence            31 2223344455555667777777655443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=8.6e-10  Score=90.85  Aligned_cols=119  Identities=24%  Similarity=0.285  Sum_probs=85.4

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------ccceeeEEEEEEE---EECCeEEEEEEE
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-----------------ITTIGIDFKIRTI---ELDGKRIKLQIW   69 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~i~   69 (216)
                      ...+...+|.++|.-++|||+|+..|..+..+.-+                 +.+.++.....++   ...++.+-++|.
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            35667889999999999999999999766553321                 1111222222222   224566889999


Q ss_pred             eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                      |||||-.+.......++.+|++++|+|+.+.-.+..- +.   +......+.|+++|+||+|.
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~---ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RI---IKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HH---HHHHHhccCcEEEEEehhHH
Confidence            9999999999999999999999999999876444332 11   22223347899999999996

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=1e-09  Score=84.86  Aligned_cols=127  Identities=20%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             CCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeeEEEEEEEEECCeE----------------
Q 027985            3 TAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS---FITTIGIDFKIRTIELDGKR----------------   63 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------------   63 (216)
                      ++|+-...+.+...-|+++|+-+.||||||+.|+.+.++..   .+|+  +++....+.-+...                
T Consensus        46 ~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPT--td~Fi~vM~G~~e~~ipGnal~vd~~~pF~  123 (532)
T KOG1954|consen   46 HSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPT--TDRFIAVMHGDEEGSIPGNALVVDAKKPFR  123 (532)
T ss_pred             ccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCC--cceeEEEEecCcccccCCceeeecCCCchh
Confidence            35666677888889999999999999999999999888642   2333  34444444332211                


Q ss_pred             -----------------------EEEEEEeCCCccc-----------cccccccccccccEEEEEEECCChhhHHHHHHH
Q 027985           64 -----------------------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNW  109 (216)
Q Consensus        64 -----------------------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~  109 (216)
                                             -.+.|+||||.-.           +.....-|...+|.++++||..--+--.+..+.
T Consensus       124 gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~v  203 (532)
T KOG1954|consen  124 GLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRV  203 (532)
T ss_pred             hhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHH
Confidence                                   1479999999322           222223366789999999998543333333333


Q ss_pred             HHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985          110 MRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus       110 ~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      +..+.   ...-.+-||+||.|+.+
T Consensus       204 i~aLk---G~EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  204 IDALK---GHEDKIRVVLNKADQVD  225 (532)
T ss_pred             HHHhh---CCcceeEEEeccccccC
Confidence            44443   34567889999999865

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.05  E-value=5.8e-10  Score=84.08  Aligned_cols=106  Identities=22%  Similarity=0.172  Sum_probs=65.7

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  143 (216)
                      +.+.|++|.|.-..   -.....-+|.+++|.-..-.+.++.++.-+.++.        =++|+||.|....... ..+.
T Consensus       144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a-~r~l  211 (323)
T COG1703         144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKA-AREL  211 (323)
T ss_pred             CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHH-HHHH
Confidence            56888899884322   2234556888888876655555555544433332        2889999996432111 1111


Q ss_pred             HHHH------HHHhC--CcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          144 GQEL------ADEYG--IKFFETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       144 ~~~~------~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ...+      ....+  -+++.+||.+|+|+++|++.+.++.....
T Consensus       212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~  257 (323)
T COG1703         212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT  257 (323)
T ss_pred             HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence            1111      11222  37999999999999999999988876443

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.04  E-value=1.6e-09  Score=79.93  Aligned_cols=154  Identities=21%  Similarity=0.161  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------cccccccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRGA   88 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~   88 (216)
                      -+|.++|.|++||||++..+.+.........+.+.......+.+.+  -++++.|.||.-+       .........+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3789999999999999999998877665555556666666666776  4799999999432       234455677899


Q ss_pred             cEEEEEEECCChhhHHHHHH-----------------------------------------HHHHHHHhc----------
Q 027985           89 MGILLVYDVTDESSFNNIRN-----------------------------------------WMRNIDQHA----------  117 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~-----------------------------------------~~~~l~~~~----------  117 (216)
                      +++++|.|+..|-+...+.+                                         .+.+.+.+.          
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            99999999865422221111                                         111100000          


Q ss_pred             -----------CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          118 -----------ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       118 -----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                                 ..-+|.+.++||+|...      .++......  ....+++||.++.|++++++.+.+.+.-
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS------iEELdii~~--iphavpISA~~~wn~d~lL~~mweyL~L  282 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS------IEELDIIYT--IPHAVPISAHTGWNFDKLLEKMWEYLKL  282 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceee------eeccceeee--ccceeecccccccchHHHHHHHhhcchh
Confidence                       01366788888888532      111111111  1347999999999999999998887753

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.03  E-value=3.1e-10  Score=84.30  Aligned_cols=154  Identities=19%  Similarity=0.157  Sum_probs=84.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC------CC-----CCccccce---------------eeEEEEEEEEECCe-----
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD------SF-----TTSFITTI---------------GIDFKIRTIELDGK-----   62 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~------~~-----~~~~~~~~---------------~~~~~~~~~~~~~~-----   62 (216)
                      ..+.|.|.|+||+|||||+..|...      .+     ++++..+-               ....+...+-..+.     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            4578999999999999999998421      11     11111100               12233333322111     


Q ss_pred             -------------EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985           63 -------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK  129 (216)
Q Consensus        63 -------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  129 (216)
                                   .+.+.|++|.|.-..   -.....-+|.+++|......+.++.++.-+.++        .=++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence                         157888898883221   223455689999998776555555444333333        22889999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHh-------CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          130 ADMDESKRAVPTAKGQELADEY-------GIKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       130 ~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      .|......  ...+.+......       .-+++.+||.+++|+++|++.|.++....
T Consensus       177 aD~~gA~~--~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  177 ADRPGADR--TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             -SHHHHHH--HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CChHHHHH--HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            99633111  112222222211       13799999999999999999988765543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01855 YqeH YqeH

Probab=99.00  E-value=2.7e-09  Score=77.75  Aligned_cols=94  Identities=20%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHh
Q 027985           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEY  151 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~  151 (216)
                      +..++..+++.+|++++|+|+.++...     |...+... ..+.|+++|+||+|+.+  ........+.+.     +..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLP--KDKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCC--CCCCHHHHHHHHHHHHHhhc
Confidence            466777889999999999999875321     12222222 23579999999999854  222333333333     223


Q ss_pred             CC---cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          152 GI---KFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       152 ~~---~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      +.   .+|++||++++|+++++++|.+.+.
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            32   6899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.00  E-value=5.8e-09  Score=82.46  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             cccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985           79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE  157 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                      .+....++++|.+++|+|+.++. ....+.+|+..+..   .++|+++|+||+|+.+...   ...........++.+++
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~---~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE---QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH---HHHHHHHHHhcCCeEEE
Confidence            34444688999999999998765 44455666655533   3689999999999853111   12222333566788999


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 027985          158 TSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~  175 (216)
                      +||+++.|+++|++.|..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999998864

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=7.2e-09  Score=81.83  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=84.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCC--------------CC------ccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD--DSF--------------TT------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~--~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ..+|+-.|.+|||||-..|+-  +-.              ..      +.+.+......+..+.+++  ..++|.|||||
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPGH   91 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPGH   91 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCCc
Confidence            457899999999999998741  111              00      1233444445555556665  68999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (216)
                      +.++.-....+.-+|.+++|+|+-..-.- ...+.++..+.   .++|++=.+||.|..   .....+.+.++-+.+++
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcrl---R~iPI~TFiNKlDR~---~rdP~ELLdEiE~~L~i  163 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCRL---RDIPIFTFINKLDRE---GRDPLELLDEIEEELGI  163 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHhh---cCCceEEEeeccccc---cCChHHHHHHHHHHhCc
Confidence            99988888888899999999999542111 11222222222   379999999999963   23345555566565543

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=5.2e-09  Score=78.69  Aligned_cols=139  Identities=21%  Similarity=0.173  Sum_probs=92.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC----------------CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      ..++|..+|.-.-|||||..+++..                ..+++...+.+++.....++.++  -.+-.+|.|||..|
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHaDY   88 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChHHH
Confidence            5699999999999999998887421                12233344445444434444444  57888999999998


Q ss_pred             ccccccccccccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCC--CCHHHHHHHHHHh
Q 027985           78 RTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWMRNIDQHAADNVNK-ILVGNKADMDESKRA--VPTAKGQELADEY  151 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~--~~~~~~~~~~~~~  151 (216)
                      -........+.|++|+|+++.|.   ++.+.+    ...++.   +.|. ++++||+|+.++.+.  .-..+++++...+
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            87777788899999999999873   443332    222222   5665 455799999764332  2345566777777


Q ss_pred             CC-----cEEEEecC
Q 027985          152 GI-----KFFETSAK  161 (216)
Q Consensus       152 ~~-----~~~~~Sa~  161 (216)
                      ++     +++.-||.
T Consensus       162 ~f~gd~~Pii~gSal  176 (394)
T COG0050         162 GFPGDDTPIIRGSAL  176 (394)
T ss_pred             CCCCCCcceeechhh
Confidence            63     56666654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.99  E-value=3.3e-09  Score=83.80  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ..++|.+++|++.....++..+..|+..+..   .++|+++|+||+|+.+.................+..++++||++++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888889999998775543   3689999999999964221111122233345667899999999999


Q ss_pred             CHHHHHHHHHH
Q 027985          165 NVEQVFFSIAR  175 (216)
Q Consensus       165 ~i~~l~~~l~~  175 (216)
                      |+++|+++|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999998864

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.97  E-value=3.6e-09  Score=81.86  Aligned_cols=88  Identities=13%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             ccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985           82 TAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ...+.++|++++|+|+.++. ++..+.+|+..+...   ++|+++|+||+|+.+..   .......+....+..++++||
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~---~~~~~~~~~~~~g~~v~~vSA  146 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE---EEELELVEALALGYPVLAVSA  146 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH---HHHHHHHHHHhCCCeEEEEEC
Confidence            34588999999999999887 778888887766543   68999999999995421   111223334456789999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIAR  175 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~  175 (216)
                      +++.|+++++..|..
T Consensus       147 ~~g~gi~~L~~~L~~  161 (287)
T cd01854         147 KTGEGLDELREYLKG  161 (287)
T ss_pred             CCCccHHHHHhhhcc
Confidence            999999999987763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01859 MJ1464 MJ1464

Probab=98.96  E-value=2.3e-09  Score=75.55  Aligned_cols=94  Identities=19%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE  157 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                      ..++...++++|++++|+|+.++...... .+...+.   ..+.|+++|+||+|+.+.. .  ......+....+..+++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~-~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKE-V--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHH-H--HHHHHHHHHhCCCcEEE
Confidence            34456677889999999999875432221 1122222   1257999999999985311 1  11111333445678999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 027985          158 TSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      +||+++.|++++++.|.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999987765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.95  E-value=2.9e-09  Score=85.99  Aligned_cols=159  Identities=25%  Similarity=0.395  Sum_probs=116.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+|+.|+|..++|||.|+.+++...+.+...+--+  .+...+..++...-+-+.|.+|..     ...|...+|++|||
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv  102 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV  102 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence            58999999999999999999999888665444433  444555667777788888998843     23345568999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCC-CCCCH-HHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESK-RAVPT-AKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~-~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |...+.++++.+..+...+..+. ...+|+++++++.-..... +.+.. ...+..++...+.+|+.++.+|.++...|+
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~  182 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ  182 (749)
T ss_pred             EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence            99999999999888766664433 4568888888876553322 22222 333333444458999999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          172 SIAREIKQR  180 (216)
Q Consensus       172 ~l~~~~~~~  180 (216)
                      .+...+...
T Consensus       183 ~~~~k~i~~  191 (749)
T KOG0705|consen  183 EVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHH
Confidence            888777655

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.95  E-value=7.6e-09  Score=80.47  Aligned_cols=163  Identities=18%  Similarity=0.133  Sum_probs=100.5

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc--------------cccceeeEEEEEEEEECCeE-----------
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS--------------FITTIGIDFKIRTIELDGKR-----------   63 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----------   63 (216)
                      .+.....+.|.++|.-+.|||||+-.|.....+..              ...+.+-+.....+-+++.+           
T Consensus       111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a  190 (527)
T COG5258         111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA  190 (527)
T ss_pred             ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence            34466789999999999999999988865444322              12222333444444443322           


Q ss_pred             ----------EEEEEEeCCCcccccccc--ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 ----------IKLQIWDTAGQERFRTIT--TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ----------~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                                --+.++|+.||+.|-...  ..+-.+.|..++++.+++.-+. ..++.   +.-......|+++++||+|
T Consensus       191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEH---Lgi~~a~~lPviVvvTK~D  266 (527)
T COG5258         191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEH---LGIALAMELPVIVVVTKID  266 (527)
T ss_pred             HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHh---hhhhhhhcCCEEEEEEecc
Confidence                      137889999999875433  3344678999999999875321 11222   2222233799999999999


Q ss_pred             CCCCCC-CCCHHHHHHHHH----------------------HhC---CcEEEEecCCCCCHHHHHHHHHH
Q 027985          132 MDESKR-AVPTAKGQELAD----------------------EYG---IKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       132 ~~~~~~-~~~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      +.++.. +-..+++..+.+                      +.+   +++|.+|+.+|+|++-|.+.+..
T Consensus       267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            965321 111122222211                      122   47999999999998766555443

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.93  E-value=2.4e-08  Score=80.73  Aligned_cols=126  Identities=17%  Similarity=0.173  Sum_probs=81.2

Q ss_pred             eEEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh----------hHHHHHHHHHHHHH-hc
Q 027985           50 IDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWMRNIDQ-HA  117 (216)
Q Consensus        50 ~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~-~~  117 (216)
                      .......+.+ .+  ..+.++|++|+.....-|..++.+++++|||+++++-.          .+.+.-..+..+.. ..
T Consensus       223 ~Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~  300 (389)
T PF00503_consen  223 TGITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW  300 (389)
T ss_dssp             SSEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CCeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence            3344445555 54  68999999999988899999999999999999986521          22222233333322 22


Q ss_pred             CCCCcEEEEEeCCCCC-----CCC----------CC--CCHHHHHHHHHHh------------CCcEEEEecCCCCCHHH
Q 027985          118 ADNVNKILVGNKADMD-----ESK----------RA--VPTAKGQELADEY------------GIKFFETSAKTNFNVEQ  168 (216)
Q Consensus       118 ~~~~p~ivv~nK~D~~-----~~~----------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~  168 (216)
                      -.+.|++|++||.|+-     ...          ..  -..+.+..|....            .+.++.++|.+.++++.
T Consensus       301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~  380 (389)
T PF00503_consen  301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK  380 (389)
T ss_dssp             GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred             cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence            3478999999999971     111          11  2234444443321            12467888999999999


Q ss_pred             HHHHHHHHH
Q 027985          169 VFFSIAREI  177 (216)
Q Consensus       169 l~~~l~~~~  177 (216)
                      +|+.+.+.+
T Consensus       381 v~~~v~~~i  389 (389)
T PF00503_consen  381 VFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhcCcC
Confidence            998887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK00098 GTPase RsgA; Reviewed

Probab=98.92  E-value=6e-09  Score=81.01  Aligned_cols=86  Identities=16%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             ccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985           84 YYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      .+.++|++++|+|+.++.+... +..|+..+..   .++|+++|+||+|+.+..  ..........+..+..++++||++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~~g~~v~~vSA~~  151 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDL--EEARELLALYRAIGYDVLELSAKE  151 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCH--HHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4689999999999988765444 4566665543   368999999999995311  112233444556778999999999


Q ss_pred             CCCHHHHHHHHH
Q 027985          163 NFNVEQVFFSIA  174 (216)
Q Consensus       163 ~~~i~~l~~~l~  174 (216)
                      ++|++++++.+.
T Consensus       152 g~gi~~L~~~l~  163 (298)
T PRK00098        152 GEGLDELKPLLA  163 (298)
T ss_pred             CccHHHHHhhcc
Confidence            999999998764

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=9.3e-09  Score=75.25  Aligned_cols=164  Identities=20%  Similarity=0.254  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-c--cccccccccccEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-R--TITTAYYRGAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~--~~~~~~~~~~d~~i   92 (216)
                      .+|+++|...+|||++-+....... +...-....+.....-.+.+..+++.+||.||+-.+ .  --....++++.++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            6699999999999998765443322 111111110011111122234478999999997543 2  12244688999999


Q ss_pred             EEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH-HHHHH-----HH----HHhCCcEEEEec
Q 027985           93 LVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT-AKGQE-----LA----DEYGIKFFETSA  160 (216)
Q Consensus        93 ~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~-----~~----~~~~~~~~~~Sa  160 (216)
                      ||+|+.+.  +.+..+.......-.. .+++.+=+.+.|.|...+...+.. ..+..     ++    ....+.++.+| 
T Consensus       107 fvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-  184 (347)
T KOG3887|consen  107 FVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-  184 (347)
T ss_pred             EEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-
Confidence            99999763  3333333333332222 346778888999997543332221 11111     11    12224566666 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Q 027985          161 KTNFNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~  182 (216)
                      .-...|-|.|..+++.+..+..
T Consensus       185 IyDHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  185 IYDHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             ecchHHHHHHHHHHHHHhhhch
Confidence            4556888999988888776544

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.88  E-value=6.5e-09  Score=74.22  Aligned_cols=56  Identities=21%  Similarity=0.346  Sum_probs=42.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      ...++++|+|.||+|||||+|+|.+... .....|+.|...  ..+.++.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcC
Confidence            4458999999999999999999998665 445566665443  3344443   588999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.1e-08  Score=70.93  Aligned_cols=53  Identities=25%  Similarity=0.271  Sum_probs=38.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      +++++|.+|+|||||+|+|++..... ...++.+  .....+.+++   .+.||||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999877632 2333333  3334455554   5899999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.82  E-value=1.2e-08  Score=80.55  Aligned_cols=83  Identities=18%  Similarity=0.055  Sum_probs=64.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccc---
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER---   76 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---   76 (216)
                      +++.|+|.|++|||||++.|++... .....|..|.+.....+.+.+..               ..+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998887 66666777777777777766532               3688999999432   


Q ss_pred             ----cccccccccccccEEEEEEECC
Q 027985           77 ----FRTITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        77 ----~~~~~~~~~~~~d~~i~v~d~~   98 (216)
                          ........++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1222334678999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.81  E-value=8.2e-09  Score=79.03  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER-   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-   76 (216)
                      .+.+++.|+|.|++|||||+|.|++........|..|++.....+.+.+.               ...++++|++|.-. 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            36899999999999999999999999998888999999988887766442               24689999999321 


Q ss_pred             ------cccccccccccccEEEEEEECCC
Q 027985           77 ------FRTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        77 ------~~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                            ...-....+|.+|+++-|+++.+
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEecC
Confidence                  22223345788999999988754

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.80  E-value=3.1e-08  Score=89.83  Aligned_cols=112  Identities=21%  Similarity=0.264  Sum_probs=72.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcc------ccceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccccc
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFTTSF------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTA   83 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~   83 (216)
                      .+|+|++|+||||+|+.- +..++...      ..+.+ ......+.+.+   +..++|++|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~-~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVG-GTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCC-CCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            579999999999999976 33332211      11111 11223444554   56789999932        12233544


Q ss_pred             cc---------ccccEEEEEEECCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           84 YY---------RGAMGILLVYDVTDE-----S----SFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        84 ~~---------~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      ++         +..|++|+++|+.+-     +    ....++..+.++........|+.||+||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            43         358999999998542     1    123456677788888888999999999999854

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01858 NGP_1 NGP-1

Probab=98.79  E-value=2.2e-08  Score=70.63  Aligned_cols=54  Identities=22%  Similarity=0.252  Sum_probs=38.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .++|+++|.||+|||||+|+|.+... .....++.|..  ...+..+.   .+.++||||
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence            57899999999999999999998655 33444544433  23333333   478999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.76  E-value=5.3e-08  Score=72.19  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=78.0

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChh-------hHHHHHHHH---HHHHH-hcCCCCcEEEEEeCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWM---RNIDQ-HAADNVNKILVGNKADM  132 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~---~~l~~-~~~~~~p~ivv~nK~D~  132 (216)
                      ++|+.+|++|+.....-|...+.+..++|||+..+...       +-..+++-+   ..+.+ ..-..+-+|+.+||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            68999999999998899999999999999999876521       122222222   22211 11224678999999998


Q ss_pred             CCCC---------------------------CCCCHH--HHHHHHHH-------------hCCcEEEEecCCCCCHHHHH
Q 027985          133 DESK---------------------------RAVPTA--KGQELADE-------------YGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus       133 ~~~~---------------------------~~~~~~--~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      ....                           ....+.  .++.|...             .-|-.+++.|.+.++|+.+|
T Consensus       282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF  361 (379)
T KOG0099|consen  282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  361 (379)
T ss_pred             HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence            2210                           001111  11112111             11456788899999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 027985          171 FSIAREIKQRLVESD  185 (216)
Q Consensus       171 ~~l~~~~~~~~~~~~  185 (216)
                      +...+.+......+.
T Consensus       362 nDcrdiIqr~hlrqy  376 (379)
T KOG0099|consen  362 NDCRDIIQRMHLRQY  376 (379)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            998888876655543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.75  E-value=4.5e-08  Score=78.10  Aligned_cols=95  Identities=21%  Similarity=0.306  Sum_probs=67.4

Q ss_pred             ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHHH
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELAD  149 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~  149 (216)
                      .+.+..+...+.+.++++++|+|+.+...     .|...+..... +.|+++|+||+|+.+  .....+.+.    .+++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHH
Confidence            34566777778889999999999976431     23344444333 579999999999864  223333333    3455


Q ss_pred             HhCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027985          150 EYGI---KFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       150 ~~~~---~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      ..++   .++.+||+++.|++++++.|.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6665   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.74  E-value=7.2e-09  Score=77.32  Aligned_cols=158  Identities=18%  Similarity=0.166  Sum_probs=87.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccceeeEEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI   80 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~   80 (216)
                      .+...+++++|.+++|||+||+.++..+.... ..+..+.......+..+.   .+.++|.||-          ..+..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            45678999999999999999999976554221 111222223344445544   7889999991          112233


Q ss_pred             ccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---CCHHHHHH----HHHH
Q 027985           81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA---VPTAKGQE----LADE  150 (216)
Q Consensus        81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~----~~~~  150 (216)
                      ...++-+   .--+++.+|++-+-.-.+. ..++.+.+.   ++|+.+|.||+|.......   -....++.    +...
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~ge~---~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLGEN---NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHhhc---CCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            3333322   2224445555432111111 112233333   7999999999997432110   00111111    1111


Q ss_pred             ---hCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985          151 ---YGIKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       151 ---~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                         ...+++.+|+.++.|+++|+-.|.+.
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhhh
Confidence               12467789999999999988666543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.69  E-value=1.5e-07  Score=66.25  Aligned_cols=86  Identities=21%  Similarity=0.105  Sum_probs=55.4

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+.+.. . .......+....+..++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~-~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKE-V-LRKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHH-H-HHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            68999999988754432  12221 11122368999999999985311 0 11112223333346789999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          169 VFFSIAREIKQ  179 (216)
Q Consensus       169 l~~~l~~~~~~  179 (216)
                      +++.+.+...+
T Consensus        76 L~~~i~~~~~~   86 (155)
T cd01849          76 KESAFTKQTNS   86 (155)
T ss_pred             HHHHHHHHhHH
Confidence            99998876543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=1.6e-07  Score=73.04  Aligned_cols=155  Identities=15%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc--------------cccceeeEEEEEEEEECCe-----------------
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS--------------FITTIGIDFKIRTIELDGK-----------------   62 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-----------------   62 (216)
                      -.++++|+|.-.+|||||+-.|+....+..              ...+.+.......+-++..                 
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            368999999999999999987754332211              1111111111111111110                 


Q ss_pred             --EEEEEEEeCCCcccccccccccccc--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           63 --RIKLQIWDTAGQERFRTITTAYYRG--AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        63 --~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                        .--+.++|.+|+..|.......+..  .|.+++|++++..-.+.. ++.+-.+..   -++|++++++|+|+.+....
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence              1247899999999887766655543  577888888876433322 122222222   27999999999999652110


Q ss_pred             -----------------------CCHHHHHHHHHHh----CCcEEEEecCCCCCHHHHHHH
Q 027985          139 -----------------------VPTAKGQELADEY----GIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus       139 -----------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                                             -...++-..+.+.    -.++|-+|+..|+|++-+...
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence                                   1111221222222    147999999999998755443

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=3.2e-07  Score=70.58  Aligned_cols=145  Identities=18%  Similarity=0.180  Sum_probs=93.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC----------CCCC----ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD----------SFTT----SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   79 (216)
                      ..++|.-+|.-.-|||||-.+++.-          .+.+    ..+...+++....++.+....-.+-=.|.|||..|-.
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            4689999999999999998776421          1100    1122234445555666554444677789999999888


Q ss_pred             ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHHhC-----
Q 027985           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA--VPTAKGQELADEYG-----  152 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~-----  152 (216)
                      .......+.|++|+|+.++|..- ...++.+...++. . -..+++.+||.|+.++.+.  .-..+++++...++     
T Consensus       133 NMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV-G-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~  209 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV-G-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN  209 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc-C-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            78888899999999999998432 2223322323333 2 2346777899999754432  22344566666665     


Q ss_pred             CcEEEEecC
Q 027985          153 IKFFETSAK  161 (216)
Q Consensus       153 ~~~~~~Sa~  161 (216)
                      ++++.=||.
T Consensus       210 ~PvI~GSAL  218 (449)
T KOG0460|consen  210 TPVIRGSAL  218 (449)
T ss_pred             CCeeecchh
Confidence            567776654

>cd01855 YqeH YqeH

Probab=98.68  E-value=4.2e-08  Score=71.47  Aligned_cols=54  Identities=30%  Similarity=0.389  Sum_probs=38.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC---------CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      ...++++|.+|+|||||||+|++...         .....+++|.+  ...+.++.   .+.|+||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence            35799999999999999999987432         33445554433  34444443   579999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.68  E-value=9.1e-08  Score=74.11  Aligned_cols=58  Identities=28%  Similarity=0.341  Sum_probs=43.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ...++++|+|.||+|||||+|+|.+... .....++.|...  ..+..++   .+.++||||.-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence            4568999999999999999999998765 445566665443  3444444   58899999963

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.6e-07  Score=75.38  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=82.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccccee------------------------------------------
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIG------------------------------------------   49 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~~~------------------------------------------   49 (216)
                      +...||++.|..++||||++|+++....-++ ..+++.                                          
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4568999999999999999999976544222 111110                                          


Q ss_pred             eEEEEEEEEECCeE-----EEEEEEeCCCcc---ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 027985           50 IDFKIRTIELDGKR-----IKLQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV  121 (216)
Q Consensus        50 ~~~~~~~~~~~~~~-----~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~  121 (216)
                      -......+.+++..     -.+.++|.||.+   +...-...+..++|++|+|.++.+..+...-    +.+......+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSEEKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhccCC
Confidence            00001111111110     157888999943   3445456678899999999999765444332    22333333344


Q ss_pred             cEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--------CcEEEEecC
Q 027985          122 NKILVGNKADMDESKRAVPTAKGQELADEYG--------IKFFETSAK  161 (216)
Q Consensus       122 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~  161 (216)
                      .++|+-||.|...++ +...+++......+.        -.+|+||++
T Consensus       263 niFIlnnkwDasase-~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  263 NIFILNNKWDASASE-PECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             cEEEEechhhhhccc-HHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            556666888985433 233344433333332        258999955

>cd01858 NGP_1 NGP-1

Probab=98.68  E-value=9.2e-08  Score=67.46  Aligned_cols=89  Identities=18%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             ccccccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985           84 YYRGAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      .+.++|++++|+|+.++..  ...+.+   .+.. ...+.|+++|+||+|+.+..  ........+.+.....++.+||+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~---~l~~-~~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEE---YLKK-EKPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHH---HHHh-ccCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcEEEEEeecc
Confidence            4678999999999987632  222222   2222 23358999999999985311  11122233333222345889999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIK  178 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (216)
                      ++.|++++++.+.+.+.
T Consensus        79 ~~~~~~~L~~~l~~~~~   95 (157)
T cd01858          79 NPFGKGSLIQLLRQFSK   95 (157)
T ss_pred             ccccHHHHHHHHHHHHh
Confidence            99999999999877643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.66  E-value=8.5e-08  Score=73.89  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=42.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ...++++|+|.||+|||||+|+|.+... .....++.|...  ..+.++.   .+.|+||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence            3568999999999999999999998764 344455555433  3445543   5789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01856 YlqF YlqF

Probab=98.64  E-value=1.2e-07  Score=67.79  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=40.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ...++++++|.+++|||||+|+|.+..+. ....++.+...  ..+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~--~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGI--QWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeee--EEEEec---CCEEEEECCCC
Confidence            34579999999999999999999987653 23334444333  334443   25889999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.62  E-value=1.5e-07  Score=66.33  Aligned_cols=56  Identities=20%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      ...+++++|.+++|||||+++|.+..... ..++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45788999999999999999999755422 122222223223333333   699999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.62  E-value=2.9e-08  Score=72.33  Aligned_cols=122  Identities=21%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADM  132 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~  132 (216)
                      +.+.++|.+|+......|.+.+.+...++|++.++.          ....+..+..+..+..+. -.+.++|+.+||.|+
T Consensus       199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl  278 (359)
T KOG0085|consen  199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  278 (359)
T ss_pred             heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence            567788999988777778888877766666655533          223333333333333332 246789999999998


Q ss_pred             CCCC---------------CCCCHHHHHHHHHHh----C------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          133 DESK---------------RAVPTAKGQELADEY----G------IKFFETSAKTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       133 ~~~~---------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      .++.               ..-..+.++.|..+.    +      +--+++.|.+.+||+-+|....+.+.+...+..
T Consensus       279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~  356 (359)
T KOG0085|consen  279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEY  356 (359)
T ss_pred             hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhh
Confidence            5421               122334444554332    1      223566788899999999999998887766543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.58  E-value=4.8e-08  Score=68.34  Aligned_cols=60  Identities=25%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC------CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      -.++++|++|+|||||||.|......      .....+..++.....+.+++   ...|+||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCccc
Confidence            46789999999999999999876321      11112222223344455544   35788999965443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.57  E-value=1.9e-07  Score=65.73  Aligned_cols=56  Identities=23%  Similarity=0.316  Sum_probs=40.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      ....+++++|.+|+|||||+|.|.+... .....+..|.....  +.++.   .+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~~---~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLDN---KIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEecC---CEEEEECCC
Confidence            3468899999999999999999998653 33444555544332  33332   689999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=98.57  E-value=3e-07  Score=65.76  Aligned_cols=91  Identities=21%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      .....+.++|++++|+|+.++...... .    +.... .+.|+++|+||+|+.+. ..  ......+....+..++.+|
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~-~~k~~ilVlNK~Dl~~~-~~--~~~~~~~~~~~~~~vi~iS   82 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL-GNKPRIIVLNKADLADP-KK--TKKWLKYFESKGEKVLFVN   82 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh-cCCCEEEEEehhhcCCh-HH--HHHHHHHHHhcCCeEEEEE
Confidence            345667889999999999865432211 1    11111 14689999999998531 11  1111122233345789999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (216)
                      |++++|++++.+.+...+..
T Consensus        83 a~~~~gi~~L~~~l~~~l~~  102 (171)
T cd01856          83 AKSGKGVKKLLKAAKKLLKD  102 (171)
T ss_pred             CCCcccHHHHHHHHHHHHHH
Confidence            99999999999998887643

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.54  E-value=1.8e-07  Score=73.43  Aligned_cols=57  Identities=30%  Similarity=0.315  Sum_probs=44.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ..++++|+|.|++|||||||+|.+... .....|+.|  .....+..+.   .+.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCcC
Confidence            347899999999999999999998776 445566555  4455566665   48999999953

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=4e-07  Score=76.55  Aligned_cols=116  Identities=23%  Similarity=0.277  Sum_probs=82.7

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--CC------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TT------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      .+.+..-+|+++-.-..|||||+..|....-  ..            ..+.+.+++.....+..-.+.+.++++|+|||-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            4566777899999999999999999863221  10            112233444555555554455899999999999


Q ss_pred             ccccccccccccccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                      .|.+......+-+|++++++|+...   ++..-++       +....+..+++|+||+|.
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlr-------q~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLR-------QAWIEGLKPILVINKIDR  136 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHH-------HHHHccCceEEEEehhhh
Confidence            9999999999999999999999764   3333332       222236678999999993

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.51  E-value=3.6e-07  Score=71.27  Aligned_cols=153  Identities=17%  Similarity=0.147  Sum_probs=82.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------------c--ccceeeEE--------------------EEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------------F--ITTIGIDF--------------------KIR   55 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~----------------~--~~~~~~~~--------------------~~~   55 (216)
                      ..++|.|+|.-.+|||||+-.|+....+..                +  ....+.+.                    ...
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            478999999999999999877653322111                1  11111110                    001


Q ss_pred             EEEECCeEEEEEEEeCCCcccccccccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           56 TIELDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      .+.-+.. -.+.|+|.+|++.|-....+..  .--|...+++-++.. -+...++.+.....   -.+|+++|.+|+|+.
T Consensus       212 kIce~sa-KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  212 KICEDSA-KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeccccc-eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence            1111111 2478999999998765443322  234555666655431 12222222222222   268999999999985


Q ss_pred             CCCCCCCHHHHHHH---HHH--------------------------hCCcEEEEecCCCCCHHHHHHHH
Q 027985          134 ESKRAVPTAKGQEL---ADE--------------------------YGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus       134 ~~~~~~~~~~~~~~---~~~--------------------------~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      ..  .+..+-.+.+   .+.                          .-|++|.+|..+|+|++-|...|
T Consensus       287 PA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  287 PA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             cH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            42  1222222222   111                          12679999999999987655443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.49  E-value=1.3e-05  Score=55.52  Aligned_cols=147  Identities=19%  Similarity=0.259  Sum_probs=79.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCC-Ccccccc-------------
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQERFRT-------------   79 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~~~~-------------   79 (216)
                      ..++|.|.|+||+||||++..+...--...+. -  -.+....+.-++..+-|.|+|.. |...+-.             
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            46899999999999999998876432211111 1  12555556667777788888877 3111000             


Q ss_pred             ------------ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH
Q 027985           80 ------------ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL  147 (216)
Q Consensus        80 ------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  147 (216)
                                  .....+..+|+  +++|--.+-.+ ..+.+...+........|++.++.+.+.        ...++.+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr--------~P~v~~i  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR--------HPLVQRI  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC--------ChHHHHh
Confidence                        00112233453  33444332111 1223334444444457788877776653        1122333


Q ss_pred             HHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          148 ADEYGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ....++.+|    .|.+|-+.+++.+.+.+.
T Consensus       150 k~~~~v~v~----lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         150 KKLGGVYVF----LTPENRNRILNEILSVLK  176 (179)
T ss_pred             hhcCCEEEE----EccchhhHHHHHHHHHhc
Confidence            333333333    566666688888877664

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=5.9e-08  Score=73.50  Aligned_cols=167  Identities=17%  Similarity=0.195  Sum_probs=105.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEE---ECC-----------------------
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIE---LDG-----------------------   61 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~---~~~-----------------------   61 (216)
                      .+.-+++|.-+|.--.||||+++++.+-   .|..+.+...++........   .++                       
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            4566899999999999999999887542   12222222222111111100   000                       


Q ss_pred             -----eE----EEEEEEeCCCccccccccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 027985           62 -----KR----IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWMRNIDQHAADNVNKILVGN  128 (216)
Q Consensus        62 -----~~----~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~n  128 (216)
                           ..    -.+.++|.|||+...........-.|++++++..++.    ++-+.+    ..+.-..  -..++++-|
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM~--LkhiiilQN  187 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIMK--LKHIIILQN  187 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHhh--hceEEEEec
Confidence                 00    1478899999988766666666667888888877653    344443    2232221  245788889


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          129 KADMDESKRA-VPTAKGQELADEY---GIKFFETSAKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       129 K~D~~~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      |+|+..+... ...+.++.|....   +.+++++||.-++||+-+.++|...+..--++
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd  246 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD  246 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence            9999653222 2234556665543   36899999999999999999999887644333

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=5.8e-07  Score=80.14  Aligned_cols=113  Identities=23%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC--CCccc--cceeeEEEEEEEEECCeEEEEEEEeCCCcc--------ccccccccc-
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSF--TTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY-   84 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~-   84 (216)
                      -+|+|++|+||||++..- +..+  .....  ...+..+....+.+.+   ...++||.|..        .....|..+ 
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            379999999999998752 2222  11111  0011112334455555   67888999922        223444433 


Q ss_pred             --------cccccEEEEEEECCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           85 --------YRGAMGILLVYDVTDE-----S----SFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        85 --------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                              .+..|++|+.+|+.+-     .    -...++..++++........|++|++||.|+..
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                    3568999999998542     1    123345556777777777899999999999854

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.47  E-value=3.9e-06  Score=62.63  Aligned_cols=88  Identities=15%  Similarity=0.068  Sum_probs=54.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCCCccc-cceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccc------cc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFI-TTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRT------IT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~   81 (216)
                      .....-|.|+|++++|||+|+|.|++.  .+..... ...|.........+. +....+.++||+|......      ..
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            345677899999999999999999998  6643222 222222332322221 1235899999999654322      12


Q ss_pred             cccccc--ccEEEEEEECCC
Q 027985           82 TAYYRG--AMGILLVYDVTD   99 (216)
Q Consensus        82 ~~~~~~--~d~~i~v~d~~~   99 (216)
                      ...+..  ++++||..+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            223333  788888887754

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.45  E-value=6.5e-07  Score=69.02  Aligned_cols=101  Identities=24%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             CCCccc-cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 027985           71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD  149 (216)
Q Consensus        71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  149 (216)
                      +|||-. ........+..+|++++|+|+.++.+....  .+..+.   . +.|+++|+||+|+.+.  .. ......+..
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l---~-~kp~IiVlNK~DL~~~--~~-~~~~~~~~~   74 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR---G-NKPRLIVLNKADLADP--AV-TKQWLKYFE   74 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH---C-CCCEEEEEEccccCCH--HH-HHHHHHHHH
Confidence            456532 223345678899999999999776443221  111111   1 5799999999998531  10 111112223


Q ss_pred             HhCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          150 EYGIKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ..+..++.+||+++.|++++.+.|.+.+.+.
T Consensus        75 ~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        75 EKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            3456789999999999999999988887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.41  E-value=6.4e-07  Score=70.92  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=35.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCC-cccc-----ceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFTT-SFIT-----TIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      ++|+|.+|+|||||||+|++..... ...+     +..++.....+.+++.   ..|+||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            6899999999999999998764321 1111     1111223333444432   3489999975544

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.41  E-value=1.6e-06  Score=61.17  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      +++.|..|+|||||++.+...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999998754

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.40  E-value=1.3e-06  Score=69.61  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCC
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~  162 (216)
                      ...++|.+++|+++..+-....+..++..+...   +++.++|+||+|+.+..    .+..+.+.. ..+..++.+|+++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~----~~~~~~~~~~~~g~~Vi~vSa~~  181 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA----EEKIAEVEALAPGVPVLAVSALD  181 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH----HHHHHHHHHhCCCCcEEEEECCC
Confidence            367899999999996444444555555555443   67889999999996521    112222222 3467899999999


Q ss_pred             CCCHHHHHHHHH
Q 027985          163 NFNVEQVFFSIA  174 (216)
Q Consensus       163 ~~~i~~l~~~l~  174 (216)
                      ++|+++|..+|.
T Consensus       182 g~gl~~L~~~L~  193 (356)
T PRK01889        182 GEGLDVLAAWLS  193 (356)
T ss_pred             CccHHHHHHHhh
Confidence            999999988874

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.39  E-value=3e-06  Score=66.41  Aligned_cols=95  Identities=21%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCccccccc----cccc--------cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+||||.......    ...+        -...+..++|+|++..  .+.+.+. ..+....   -+.-+|+||.|
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIlTKlD  270 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIILTKLD  270 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEEECCC
Confidence            67999999995432211    1111        1246678999999853  2222221 2222211   24478889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985          132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ...     ..-.+..+....+.++..++  +|++++++-.
T Consensus       271 ~t~-----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        271 GTA-----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCC-----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            532     12244555677789999998  8898877754

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=8.1e-07  Score=69.80  Aligned_cols=157  Identities=17%  Similarity=0.073  Sum_probs=96.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCccccceeeEEEEEEEEEC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD-------------------------------SFTTSFITTIGIDFKIRTIELD   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   60 (216)
                      +...++++++|.-.+||||+-.+++..                               ...++.+..-+.+.....+...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            356799999999999999997665321                               0111112222333333333333


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HHHH-H-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNI-R-NWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~-~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      .  -.+.|.|+|||..+-........++|+.++|+++.-.+.   |+.- + +....+... ..-...|+++||+|-+..
T Consensus       156 ~--~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  156 N--KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV  232 (501)
T ss_pred             c--eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCcc
Confidence            3  479999999999888777778889999999998854322   2211 1 112222222 224567888999996432


Q ss_pred             C--CCCC---HHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Q 027985          136 K--RAVP---TAKGQELADEYG------IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       136 ~--~~~~---~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~  171 (216)
                      .  .+.+   .+.+..|.+..+      ..++++|..+|.++++...
T Consensus       233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            1  1111   233445555444      4699999999999887653

>PRK13796 GTPase YqeH; Provisional

Probab=98.37  E-value=3.5e-06  Score=67.47  Aligned_cols=84  Identities=24%  Similarity=0.368  Sum_probs=56.6

Q ss_pred             ccccc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHHHHhCC---cEE
Q 027985           85 YRGAM-GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELADEYGI---KFF  156 (216)
Q Consensus        85 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~---~~~  156 (216)
                      +...+ .+++|+|+.+..     ..|...+..... +.|+++|+||+|+.+  .....+.+.    .+++..++   .++
T Consensus        66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~g~~~~~v~  137 (365)
T PRK13796         66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKELGLRPVDVV  137 (365)
T ss_pred             hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence            34444 899999997743     123334444333 578999999999954  223333333    33555565   689


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      .+||+++.|++++++.|.+.
T Consensus       138 ~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        138 LISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.37  E-value=1.2e-06  Score=67.85  Aligned_cols=103  Identities=23%  Similarity=0.231  Sum_probs=66.6

Q ss_pred             eCCCccc-cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q 027985           70 DTAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA  148 (216)
Q Consensus        70 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  148 (216)
                      -+|||-. ........+..+|++++|+|+.++.+...  .++..+   .. +.|+++|+||+|+.+.  .. ......+.
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-~kp~iiVlNK~DL~~~--~~-~~~~~~~~   76 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-NKPRLLILNKSDLADP--EV-TKKWIEYF   76 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-CCCEEEEEEchhcCCH--HH-HHHHHHHH
Confidence            4567542 22334567889999999999977643222  111111   12 5799999999998531  10 11122222


Q ss_pred             HHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          149 DEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ...+..++.+|++++.|++++.+.+.+.+....
T Consensus        77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~  109 (287)
T PRK09563         77 EEQGIKALAINAKKGQGVKKILKAAKKLLKEKN  109 (287)
T ss_pred             HHcCCeEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence            344567899999999999999999888876543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.36  E-value=3.3e-05  Score=61.65  Aligned_cols=144  Identities=17%  Similarity=0.267  Sum_probs=82.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc--------------ccccee-----eE-----EEEEEEEE-CCeEEEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS--------------FITTIG-----ID-----FKIRTIEL-DGKRIKLQ   67 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~--------------~~~~~~-----~~-----~~~~~~~~-~~~~~~~~   67 (216)
                      ...+-|.|+|+-.+||||||++|+...+-+.              .+...+     ++     -.-..+.+ ++..+++.
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            3458899999999999999999964322111              111111     00     01112333 45668899


Q ss_pred             EEeCCCc--------cc-----c-cccccc---------------ccc--cccEEEEEEECC--C--hhhHHHHH-HHHH
Q 027985           68 IWDTAGQ--------ER-----F-RTITTA---------------YYR--GAMGILLVYDVT--D--ESSFNNIR-NWMR  111 (216)
Q Consensus        68 i~D~~G~--------~~-----~-~~~~~~---------------~~~--~~d~~i~v~d~~--~--~~s~~~~~-~~~~  111 (216)
                      ++|+-|-        .+     + ..-|..               .++  ..-++++.-|.+  +  ++.+..+. +.++
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            9999881        10     0 011111               111  122344444443  1  23333332 2345


Q ss_pred             HHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985          112 NIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus       112 ~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      .|...   ++|+++++|-.+-   ......+....+..+++++++++++.+
T Consensus       175 ELk~i---gKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  175 ELKEI---GKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHHHh---CCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence            55554   7899999998884   234456777888899999999998754

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.36  E-value=1.6e-06  Score=60.05  Aligned_cols=76  Identities=17%  Similarity=0.154  Sum_probs=50.3

Q ss_pred             cccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985           83 AYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA  160 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ..+..+|++++|+|+.++.+..  .+.+++..   .. .+.|+++|+||+|+.+..   .......+.+..+..++++||
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~~-~~k~~iivlNK~DL~~~~---~~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---VD-PRKKNILLLNKADLLTEE---QRKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---cc-CCCcEEEEEechhcCCHH---HHHHHHHHHHhcCCeEEEEEe
Confidence            4567899999999998865433  33333322   21 368999999999985311   122334445556678999999


Q ss_pred             CCCCC
Q 027985          161 KTNFN  165 (216)
Q Consensus       161 ~~~~~  165 (216)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.36  E-value=1e-06  Score=70.37  Aligned_cols=56  Identities=29%  Similarity=0.423  Sum_probs=39.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      .+|+++|.+|+|||||+|+|+...      ...+..|+.|...  ..+.+++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCCC
Confidence            489999999999999999998743      2334556655443  3445543   367999999543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.34  E-value=8e-06  Score=66.12  Aligned_cols=85  Identities=11%  Similarity=-0.001  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCccccccccc----c--ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITT----A--YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.......+.    .  .....+-+++|+|+.-.......   ...+...   -.+.-+|+||.|...   
T Consensus       183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~---~~~~g~IlTKlD~~a---  253 (429)
T TIGR01425       183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS---VDVGSVIITKLDGHA---  253 (429)
T ss_pred             CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc---cCCcEEEEECccCCC---
Confidence            6899999999543321111    1  12346778999998654322221   2223322   235578899999632   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEe
Q 027985          138 AVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                        ..-.+..+....+.++.+++
T Consensus       254 --rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 --KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             --CccHHhhhHHHHCCCeEEEc
Confidence              11223445566666666665

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=5.9e-06  Score=67.87  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .+...++-|+|+|+||+||||||+.|...-.........+    ..+ ...++.-++++.+.|..  ... ......-+|
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaD  135 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIAD  135 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChHH--HHH-HHhHHHhhh
Confidence            3455678889999999999999988754322111110001    111 12344568999999842  122 233456789


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDE  134 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~  134 (216)
                      ++++++|.+-.-..+.+ ++++.+..+   +.| ++-|+++.|+-.
T Consensus       136 LVlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk  177 (1077)
T COG5192         136 LVLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFK  177 (1077)
T ss_pred             eeEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeeccccc
Confidence            99999999765333333 223333333   445 455889999854

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=1e-07  Score=75.15  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--------CCCC----------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD--------SFTT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      -+|.|+-.-.+||||.-.+++..        .++.          +.+.+.++......+.+.|  .++.++||||+-.+
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg--~rinlidtpghvdf  115 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG--HRINLIDTPGHVDF  115 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc--ceEeeecCCCcceE
Confidence            46788889999999998887521        1111          1233334334444445555  78999999999999


Q ss_pred             ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      .......++-.|+++.|||++..-..+.+.-|.+.    ...++|-.+.+||+|...
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence            99999999999999999999876555556566443    234789999999999744

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.32  E-value=1.1e-06  Score=66.42  Aligned_cols=56  Identities=23%  Similarity=0.240  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc------cccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTS------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      .++++|++|+|||||||+|.+......      ...+..++.....+.+.+    ..|+||||...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~  183 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE  183 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence            678999999999999999987543211      111111122223334433    36889999644

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.31  E-value=1e-06  Score=70.48  Aligned_cols=55  Identities=31%  Similarity=0.386  Sum_probs=38.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      .+++|+|.+|+|||||||+|+...      ...+..|++|.+  ...+.+++   ...++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~---~~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDD---GSFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCC---CcEEEECCCcc
Confidence            479999999999999999998542      123445555544  34445544   25799999963

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.31  E-value=1.5e-05  Score=61.23  Aligned_cols=95  Identities=16%  Similarity=0.088  Sum_probs=57.7

Q ss_pred             EEEEEEeCCCccccccccc------------cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 IKLQIWDTAGQERFRTITT------------AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+||||....+....            ..-...|..++|+|+...  .+.+.. ...+....   -+.-+|+||.|
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlD  228 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLD  228 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccC
Confidence            6899999999654322211            111237889999999743  223322 23333222   13577889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985          132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ...     ..-.+..+....+.++.+++  +|++++++-.
T Consensus       229 e~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       229 GTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             CCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            633     22244555667788988888  8888877654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.31  E-value=1.3e-06  Score=68.65  Aligned_cols=96  Identities=14%  Similarity=0.073  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCccccccc----cccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.......    ...+  ....|..++|+|+...+.   .......+....   -.--+|+||.|...   
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~~---  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDADA---  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCCC---
Confidence            46999999995432211    1111  124678899999865432   111122232221   13477889999633   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                        ..-.+-.++...+.++.+++  +|++++++..+
T Consensus       294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             --CccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence              12234455566788998887  89999887643

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=2.5e-05  Score=57.92  Aligned_cols=157  Identities=21%  Similarity=0.302  Sum_probs=97.4

Q ss_pred             eeEEEEEcCCCC--cHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEE----EEEEEeCCCccccccccccccccc
Q 027985           15 LIKLLLIGDSGV--GKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRI----KLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus        15 ~~~i~v~G~~~s--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ...++|+|-.|+  ||-+|+.+|....+..+......++++  .+.++++.+    .+.|.-...  ++..-........
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid~kyysadi~lcishicd--e~~lpn~~~a~pl   79 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTIDNKYYSADINLCISHICD--EKFLPNAEIAEPL   79 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEecceeeecceeEEeecccc--hhccCCcccccce
Confidence            357899999998  999999999988886665555544443  344554433    333322211  1111122334456


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------------C-------------
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-----------------A-------------  138 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------------~-------------  138 (216)
                      .++++|||.+....+..+..|+.......-  -.++.++||.|......                 .             
T Consensus        80 ~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset  157 (418)
T KOG4273|consen   80 QAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET  157 (418)
T ss_pred             eeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence            678999999999999999998654332211  13466789999632110                 0             


Q ss_pred             -------------CCHHHHHHHHHHhCCcEEEEecCCC------------CCHHHHHHHHHHHH
Q 027985          139 -------------VPTAKGQELADEYGIKFFETSAKTN------------FNVEQVFFSIAREI  177 (216)
Q Consensus       139 -------------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~l~~~~  177 (216)
                                   ........++.++++.+++.++.+.            .|+..+|..|..++
T Consensus       158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                         1122345566777888999988543            47888888776544

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.23  E-value=2.1e-06  Score=65.72  Aligned_cols=59  Identities=25%  Similarity=0.269  Sum_probs=37.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      ..+++|++|+|||||+|+|.....      ......+..++.....+.+++.   -.|+||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence            467999999999999999975322      2222233333445556666432   3567999975543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.23  E-value=2.4e-06  Score=67.79  Aligned_cols=56  Identities=27%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCC-Cccccc-----eeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFT-TSFITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      ++|+|++|+|||||||.|++.... ....+.     ..++.....+.+.++   ..|+||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence            799999999999999999865432 111221     111222344445432   26889999643

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.19  E-value=7.4e-05  Score=61.89  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=58.3

Q ss_pred             EEEEEEeCCCcccccccccc---ccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTA---YYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      +.+.|+||+|....+.....   .+.  .....++|++...  ....+...+..+...    .+.-+|+||.|-..    
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~----  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG----  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----
Confidence            57999999995432211110   011  1123566777753  344444444444332    35678999999522    


Q ss_pred             CCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH----HHHHHHHHHHhh
Q 027985          139 VPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF----SIAREIKQRLVE  183 (216)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~----~l~~~~~~~~~~  183 (216)
                       ..-.+..+....+.++.+++  +|.+| ++|..    .|++.+....+.
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~  545 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRA  545 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhh
Confidence             23455666677788877776  66666 34332    345544444433

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=8.7e-06  Score=61.21  Aligned_cols=62  Identities=24%  Similarity=0.482  Sum_probs=44.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----cccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      ....|+|+.+|..|.|||||+.+|++..+...    ..|++........+.-.+..+++.|+||.|
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            34579999999999999999999998877443    233333333333334456668899999999

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=2.8e-05  Score=61.98  Aligned_cols=145  Identities=15%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-C--CccccceeeEEE------------------EEEEEEC---------CeEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF-T--TSFITTIGIDFK------------------IRTIELD---------GKRIK   65 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~-~--~~~~~~~~~~~~------------------~~~~~~~---------~~~~~   65 (216)
                      -.++++|++|+||||++..|...-. .  .......+.+.+                  .....-.         -....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            4678999999999999999864311 0  000001111111                  1111000         01247


Q ss_pred             EEEEeCCCcccccccccc---cc---ccccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCC
Q 027985           66 LQIWDTAGQERFRTITTA---YY---RGAMGILLVYDVTDE-SSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESK  136 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~---~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~  136 (216)
                      +.|+||+|....+.....   .+   ....-.++|++++.. +.+..+...+.........  ..+-=+|+||.|-..  
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence            899999995533222111   11   223446888888653 3333332222222111000  012356779999432  


Q ss_pred             CCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985          137 RAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                         ..-.+..+....+.++..++  +|.+|.
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt--~Gq~VP  321 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS--TGQKVP  321 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence               33355666777777777776  555544

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.15  E-value=8.3e-05  Score=61.11  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=50.0

Q ss_pred             EEEEEEeCCCcc-------------ccccccccccccccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985           64 IKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNK  129 (216)
Q Consensus        64 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  129 (216)
                      -++.++|.||.-             ..-.+...+..+.+++|+|+--.. ...-..+...   +.+.-+.+...|+|++|
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDL---Vsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDL---VSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHH---HHhcCCCCCeeEEEEee
Confidence            368999999932             122334557778899999984322 1112222222   33444557889999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHH
Q 027985          130 ADMDESKRAVPTAKGQELAD  149 (216)
Q Consensus       130 ~D~~~~~~~~~~~~~~~~~~  149 (216)
                      .|+.+ ....++..++.+..
T Consensus       489 VDlAE-knlA~PdRI~kIle  507 (980)
T KOG0447|consen  489 VDLAE-KNVASPSRIQQIIE  507 (980)
T ss_pred             cchhh-hccCCHHHHHHHHh
Confidence            99965 33455666665554

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.15  E-value=2.1e-05  Score=60.30  Aligned_cols=89  Identities=15%  Similarity=0.129  Sum_probs=63.1

Q ss_pred             cccccccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985           83 AYYRGAMGILLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      --..+.|-+++|+.+.+|+.-. .+.+++-.....   ++..++++||+|+.++..... .....+...++..++.+|++
T Consensus        75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~s~~  150 (301)
T COG1162          75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFVSAK  150 (301)
T ss_pred             CcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEEecCc
Confidence            3445578888888888876433 344443333333   677788899999976443332 45667778899999999999


Q ss_pred             CCCCHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAR  175 (216)
Q Consensus       162 ~~~~i~~l~~~l~~  175 (216)
                      +++++.++.+++..
T Consensus       151 ~~~~~~~l~~~l~~  164 (301)
T COG1162         151 NGDGLEELAELLAG  164 (301)
T ss_pred             CcccHHHHHHHhcC
Confidence            99999998877643

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.13  E-value=6.5e-06  Score=58.58  Aligned_cols=135  Identities=22%  Similarity=0.310  Sum_probs=66.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeC-CCccc-------------------
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQER-------------------   76 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~~-------------------   76 (216)
                      +|++.|++|+|||||+++++..--.. ..+..  .++...+.-++..+-|.+.|. .|...                   
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999986432111 11112  233344445555566677776 33110                   


Q ss_pred             ---cccccccccc----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCCCCCHHHHHHHH
Q 027985           77 ---FRTITTAYYR----GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA-DMDESKRAVPTAKGQELA  148 (216)
Q Consensus        77 ---~~~~~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~  148 (216)
                         +.......++    .++  ++|+|--.+-. .....|.+.+......+.|++.++-+. +.         ..++.+.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHH
Confidence               1111111222    334  67777543210 011223344444444567888887766 32         1345666


Q ss_pred             HHhCCcEEEEecCCCCCH
Q 027985          149 DEYGIKFFETSAKTNFNV  166 (216)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i  166 (216)
                      ...++.++.++..+.+.+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            666788898876655444

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK13695 putative NTPase; Provisional

Probab=98.13  E-value=8.7e-05  Score=53.21  Aligned_cols=22  Identities=36%  Similarity=0.768  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+|.|.+|+|||||++.+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998653

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=3.5e-06  Score=69.48  Aligned_cols=114  Identities=20%  Similarity=0.165  Sum_probs=77.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ..-+|.+.-.-.+||||+-.+.+.+.-..                  +.....++........+.  .+++.|+|||||.
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHV  115 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCce
Confidence            34456777788999999988865322110                  112222222222233333  4799999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      .+.-.....++-.|++|+|+++...-.-+...-|.+ +.++   ++|.+..+||+|..
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRM  169 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhc
Confidence            999889999999999999999876543344444433 3334   78999999999963

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.10  E-value=6.8e-06  Score=63.70  Aligned_cols=59  Identities=29%  Similarity=0.279  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcc-c-----cceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSF-I-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      -.++++|++|+|||||||.|++....... .     .+..++.....+...+   ...++|+||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence            46899999999999999999875442211 1     1111223333444443   2358999997554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.10  E-value=7.2e-06  Score=63.92  Aligned_cols=58  Identities=29%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccc-----eeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      ..++++|++|+|||||+|.|++...... ..+.     ..++.....+.+++   ...|+||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence            3588999999999999999987543221 1111     01112223334443   247889999643

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.08  E-value=3.5e-05  Score=60.51  Aligned_cols=86  Identities=10%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             EEEEEEeCCCcccccccccccc--------ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      ....++++.|......+...++        -..+.+|.|+|+.....  .+........+....+   +||+||+|+..+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~--~~~~~~~~~~Qi~~AD---~IvlnK~Dl~~~  165 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE--QMNQFTIAQSQVGYAD---RILLTKTDVAGE  165 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhh--hccccHHHHHHHHhCC---EEEEeccccCCH
Confidence            4567889999654433332221        12577999999964322  1111111112222112   888999998652


Q ss_pred             CCCCCHHHHHHHHHHhC--CcEEEEe
Q 027985          136 KRAVPTAKGQELADEYG--IKFFETS  159 (216)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~S  159 (216)
                           .+.+....+.++  +.++.++
T Consensus       166 -----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        166 -----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             -----HHHHHHHHHHhCCCCEEEEec
Confidence                 134555555444  4666553

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=4.5e-05  Score=61.97  Aligned_cols=131  Identities=20%  Similarity=0.218  Sum_probs=81.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCC------------C----CCccccceeeEEEEEEEEE--------------C
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS------------F----TTSFITTIGIDFKIRTIEL--------------D   60 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~------------~----~~~~~~~~~~~~~~~~~~~--------------~   60 (216)
                      +..+.-++.|+-.-..|||||-..|...-            |    ..+.+...++...-..+.+              +
T Consensus        15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d   94 (842)
T KOG0469|consen   15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD   94 (842)
T ss_pred             cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence            44556677889999999999998884211            1    0111222222222111111              3


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC
Q 027985           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP  140 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~  140 (216)
                      +..+-+.++|.|||-.+++.....+|-.|++++|+|..+.--.+.-.-..+.+.    .++..++++||+|..=-+.++.
T Consensus        95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~  170 (842)
T KOG0469|consen   95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQLS  170 (842)
T ss_pred             CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcCC
Confidence            334789999999999999999999999999999999876422221111122232    2455578889999643334555


Q ss_pred             HHHHH
Q 027985          141 TAKGQ  145 (216)
Q Consensus       141 ~~~~~  145 (216)
                      .+++-
T Consensus       171 ~EeLy  175 (842)
T KOG0469|consen  171 QEELY  175 (842)
T ss_pred             HHHHH
Confidence            55543

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.01  E-value=0.0002  Score=51.54  Aligned_cols=84  Identities=21%  Similarity=0.220  Sum_probs=58.4

Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH
Q 027985           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA  142 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  142 (216)
                      .+.+.|+|+|+....  .....+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|+.|...    ....
T Consensus        92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~~  161 (179)
T cd03110          92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIAE  161 (179)
T ss_pred             CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chHH
Confidence            478999999975422  23345678999999998873 4666677766666544   467889999999632    1345


Q ss_pred             HHHHHHHHhCCcEE
Q 027985          143 KGQELADEYGIKFF  156 (216)
Q Consensus       143 ~~~~~~~~~~~~~~  156 (216)
                      +++++.+..+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            56677777777654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.00  E-value=1.2e-05  Score=65.30  Aligned_cols=55  Identities=20%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      .+.|.++|.|++||||+||.|.+.+. ..+..|+.|..  ..++.+..   .+.+-|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH--FQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH--FQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce--eEEEEcCC---CceecCCCCc
Confidence            79999999999999999999998766 55667777644  44555655   5788899994

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.98  E-value=1.4e-05  Score=65.22  Aligned_cols=85  Identities=18%  Similarity=0.072  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCcccccccc----c--cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTIT----T--AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      ..+.|+||+|........    .  ..+...|.+++|+|+....   +..+....+....   ...-+|+||.|...   
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a---  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA---  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence            378999999965432111    1  1233578899999986542   2222222232221   12367789999532   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEe
Q 027985          138 AVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                        ..-.+..+....+.++.+++
T Consensus       247 --~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 --KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             --cccHHHHHHHHHCcCEEEEe
Confidence              22345566677777777776

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=8.5e-05  Score=60.24  Aligned_cols=95  Identities=12%  Similarity=0.063  Sum_probs=53.1

Q ss_pred             EEEEEEeCCCcccccc----ccccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRT----ITTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      ..+.++||+|......    ....+  .....-.++|+|++..  ...+.+.+..+...    -.-=+|+||.|-..   
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~----~~~~~I~TKlDEt~---  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH----GIHGCIITKVDEAA---  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeeeCCC---
Confidence            3678999999443211    11111  1123447788888732  22333333333221    23367789999532   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF  171 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  171 (216)
                        ..-.+-.+....+.++..++  +|.+| +++..
T Consensus       341 --~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~  371 (420)
T PRK14721        341 --SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHE  371 (420)
T ss_pred             --CccHHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence              33355667777888888886  77777 45543

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.95  E-value=8.6e-05  Score=59.38  Aligned_cols=91  Identities=12%  Similarity=0.043  Sum_probs=51.5

Q ss_pred             EEEEEEeCCCccccccc----ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.......    ...++  ...+.+++|+|++-.  ..++...+..+...    ..-=+|+||.|-..   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            57899999995432211    11222  234567888887532  22333333334321    23367789999533   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                        ..-.+-.+....+.++..++  +|+++.
T Consensus       392 --k~G~iLni~~~~~lPIsyit--~GQ~VP  417 (436)
T PRK11889        392 --SSGELLKIPAVSSAPIVLMT--DGQDVK  417 (436)
T ss_pred             --CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence              23345667777888777776  555553

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.95  E-value=0.00021  Score=58.45  Aligned_cols=95  Identities=16%  Similarity=0.191  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCccccc----cccccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFR----TITTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                      +.+.|+|++|.....    .....++.   .-.-+++|++++-.  ...+.+.+..+...   + +--+|.||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            578999999954322    11222222   22356777887532  23333333333221   1 2367889999532  


Q ss_pred             CCCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985          137 RAVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF  171 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  171 (216)
                         ..-.+..+....+.++..++  +|.+| +++..
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~  402 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLT--NGQRVPDDIKV  402 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence               22356677788888888876  67775 45443

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.93  E-value=0.00034  Score=54.92  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCcccccccccc-----cc---ccccEEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTA-----YY---RGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDE  134 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~  134 (216)
                      +...++++.|..........     .+   -..|.+|-|+|+..-..  .+......+.. ....+   ++|+||+|+.+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~--~~~~~~~~~~~Qia~AD---~ivlNK~Dlv~  159 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE--GLDAIAELAEDQLAFAD---VIVLNKTDLVD  159 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh--hHHHHHHHHHHHHHhCc---EEEEecccCCC
Confidence            45678888885543222222     12   23677999999954322  11111111211 11112   88999999976


Q ss_pred             CCCCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHH
Q 027985          135 SKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ..   ..+..+.....++  ..++.++. .+.+..+++.
T Consensus       160 ~~---~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         160 AE---ELEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             HH---HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            33   1444555556555  67888775 3344444443

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.90  E-value=2.3e-05  Score=57.24  Aligned_cols=92  Identities=18%  Similarity=0.108  Sum_probs=52.0

Q ss_pred             EEEEEEeCCCccccccc----ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.......    +..++  ...+-+++|.+++...  +.+..... +....  + +-=+|+||.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~-~~~~~--~-~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALA-FYEAF--G-IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHH-HHHHS--S-TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHH-Hhhcc--c-CceEEEEeecCCC---
Confidence            46899999995433211    11111  1456688899987543  23322222 22222  1 2356689999422   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                        ..-.+-.+....+.++-.++  +|+++++
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V~D  181 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYIT--TGQRVDD  181 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred             --CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence              33456677778888888777  6666643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.90  E-value=0.00011  Score=51.28  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=34.8

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+|++|...   ....++..+|.+++|....-.+.+.-++-  ..+.      .--++++||.|
T Consensus        92 ~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~  148 (148)
T cd03114          92 FDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD  148 (148)
T ss_pred             CCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence            6789999988542   22348888998998887753333222111  1111      12278889987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.89  E-value=0.00018  Score=51.45  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=44.0

Q ss_pred             EEEEEEeCCCcccccccc----ccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      ..+.|+|++|........    ..+  ....+.+++|++......  .+ ++...+....  + ..-+|.||.|..... 
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~~-  155 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDARG-  155 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence            468889999964221111    111  134888999999864332  22 3333333332  2 346777999964311 


Q ss_pred             CCCHHHHHHHHHHhCCcEEE
Q 027985          138 AVPTAKGQELADEYGIKFFE  157 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~  157 (216)
                          ..+...+...++++..
T Consensus       156 ----g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 ----GAALSIRAVTGKPIKF  171 (173)
T ss_pred             ----chhhhhHHHHCcCeEe
Confidence                1222356666655443

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.88  E-value=2.8e-05  Score=59.42  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=42.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ......++|+|.||+|||||||.+....      ......|+.|...... +.+.+.. .+.++||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCCc
Confidence            4567899999999999999999985332      2345667766555432 3343332 5888999994

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=7.5e-05  Score=59.44  Aligned_cols=92  Identities=10%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             EEEEEEeCCCcccccccc----ccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTIT----TAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.......+    ..+..  ..+.+++|.++.  ....++...+..+..    -.+--+|+||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence            588999999964322111    11221  335566677663  233333333332221    123467789999532   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                        ..-.+-.+....+.++..++  +|++|.+
T Consensus       357 --~~G~~Lsv~~~tglPIsylt--~GQ~Vpd  383 (407)
T PRK12726        357 --RIGDLYTVMQETNLPVLYMT--DGQNITE  383 (407)
T ss_pred             --CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence              33455667788888887776  6666654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.83  E-value=0.00047  Score=56.96  Aligned_cols=94  Identities=15%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             EEEEEeCCCcccccc---cccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           65 KLQIWDTAGQERFRT---ITTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      .+.++||+|......   .....+..   ..-.++|+|++..  ...+.+....+..    ....-+|+||.|-..    
T Consensus       336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~----  405 (484)
T PRK06995        336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAA----  405 (484)
T ss_pred             CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcc----
Confidence            578999999332111   01111111   1226788888642  2233222222222    223466789999522    


Q ss_pred             CCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985          139 VPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF  171 (216)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  171 (216)
                       ..-.+..+....+.++.+++  +|++| +++..
T Consensus       406 -~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~  436 (484)
T PRK06995        406 -SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHL  436 (484)
T ss_pred             -cchHHHHHHHHHCCCeEEEe--cCCCChhhhcc
Confidence             34456677778888888886  78888 65553

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.80  E-value=0.00012  Score=41.57  Aligned_cols=43  Identities=28%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             ccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           88 AMGILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        88 ~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      .+.++|++|.+..  .+++.-...+..++..+. +.|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            5679999999764  566777777888888776 689999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR00959 ffh signal recognition particle protein

Probab=97.78  E-value=0.00036  Score=56.92  Aligned_cols=85  Identities=19%  Similarity=0.107  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|....+.....      .....+.+++|+|+...   .+..+....+....  + ..=+|.||.|...   
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~---  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDA---  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence            57899999995332211111      12346778999998643   33333334444322  1 2356689999522   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEe
Q 027985          138 AVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                        ..-.+..+....+.++.+++
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~  273 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIG  273 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEe
Confidence              12236777777888777765

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.76  E-value=0.00055  Score=54.73  Aligned_cols=155  Identities=16%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEE-----------------EEEEC----------CeEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIR-----------------TIELD----------GKRI   64 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~----------~~~~   64 (216)
                      .--|+++|+.|+||||-+-.|...-.   ......-.|++.|-.                 .+..+          -...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            45688999999999999887743222   111111112221111                 00000          0124


Q ss_pred             EEEEEeCCCcccccccc----cccccc--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           65 KLQIWDTAGQERFRTIT----TAYYRG--AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      .+.++||.|...++...    ..++..  ..-..+|++++.  ..++++..+..+....   + -=+++||.|=.     
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~---i-~~~I~TKlDET-----  351 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP---I-DGLIFTKLDET-----  351 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC---c-ceeEEEccccc-----
Confidence            68999999965444322    222222  223556677753  4556666555554432   1 24567999932     


Q ss_pred             CCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHH----HHHHHHHHHHHh
Q 027985          139 VPTAKGQELADEYGIKFFETSAKTNFNV-EQVF----FSIAREIKQRLV  182 (216)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~----~~l~~~~~~~~~  182 (216)
                      -..-..-.+....+.++..++  +|.+| ++++    .+|++.+.....
T Consensus       352 ~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~~  398 (407)
T COG1419         352 TSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILGTFA  398 (407)
T ss_pred             CchhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhcccc
Confidence            233344455566666655554  45444 2333    355655554433

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.75  E-value=2.5e-05  Score=61.58  Aligned_cols=57  Identities=21%  Similarity=0.373  Sum_probs=44.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ...+++.|+|.|++||||+||.|..... .....|+.|  ..+..+..+.   .+.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--RSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch--hhhhheeccC---CceeccCCce
Confidence            4579999999999999999999986655 556666665  4455666665   7899999994

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.00022  Score=61.76  Aligned_cols=98  Identities=13%  Similarity=0.086  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCccccc----cccccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFR----TITTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      ..+.|+||+|....+    ......  ....+-.++|+|++..  .+.+.+....+......+ +-=+|+||.|-..   
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~---  337 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEAT---  337 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCC---
Confidence            468999999932211    111111  1234457888888742  223333333333221111 3357789999532   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF  171 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  171 (216)
                        ..-.+-.+....+.++.+++  +|++| +++..
T Consensus       338 --~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~  368 (767)
T PRK14723        338 --HLGPALDTVIRHRLPVHYVS--TGQKVPEHLEL  368 (767)
T ss_pred             --CccHHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence              23355667778888888887  78887 56554

>PRK10867 signal recognition particle protein; Provisional

Probab=97.71  E-value=0.0004  Score=56.71  Aligned_cols=85  Identities=19%  Similarity=0.102  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCcccccccc----ccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|....+...    ..+  .-..+.+++|+|+...   .++.+....+....  + ..-+|+||.|...   
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~---  254 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDA---  254 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence            579999999953321111    111  1245678999998643   23333333333321  1 2356779999522   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEe
Q 027985          138 AVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                        ..-.+..+....+.++.+++
T Consensus       255 --rgG~alsi~~~~~~PI~fig  274 (433)
T PRK10867        255 --RGGAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             --cccHHHHHHHHHCcCEEEEe
Confidence              12236667777888777766

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.68  E-value=0.00023  Score=46.30  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             EEEEc-CCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           18 LLLIG-DSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        18 i~v~G-~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      |+|.| ..|+||||+...+...-.... .+       ...+..+.. +.+.|+|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~-------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRG-KR-------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCC-Cc-------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 568999999777643222111 11       111222222 679999999964322  2356778999999997


Q ss_pred             CCChhhHHHHHHHHH
Q 027985           97 VTDESSFNNIRNWMR  111 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~  111 (216)
                      .+ ..++..+.++++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 456666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=0.002  Score=51.96  Aligned_cols=95  Identities=13%  Similarity=0.060  Sum_probs=54.2

Q ss_pred             EEEEEEeCCCcccccc----cccccccc--cc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRT----ITTAYYRG--AM-GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                      +.+.|+||+|......    ....++..  .+ -.++|+|++..  ...+.+.+..+...    -+-=+|+||.|-..  
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~--  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT--  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence            5799999999543221    11122221  12 47889998754  33333333333221    13467789999532  


Q ss_pred             CCCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985          137 RAVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF  171 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  171 (216)
                         ..-.+-.+....+.++..++  +|+++ +++..
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~  357 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIVPHNISI  357 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence               23345666777788877776  67777 55543

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.63  E-value=0.00046  Score=52.86  Aligned_cols=91  Identities=12%  Similarity=0.041  Sum_probs=51.7

Q ss_pred             EEEEEEeCCCccccccc----ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.......    +..++  ...+-.++|+|++..  .+++..+...+..    -.+-=+|+||.|-..   
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~---  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA---  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC---
Confidence            68999999995432211    11222  234567889998632  2233333333332    123367789999533   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                        ..-.+-.+....+.++..++  +|+++.
T Consensus       226 --~~G~~l~~~~~~~~Pi~~it--~Gq~vp  251 (270)
T PRK06731        226 --SSGELLKIPAVSSAPIVLMT--DGQDVK  251 (270)
T ss_pred             --CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence              23345566777788877776  565554

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.61  E-value=0.00053  Score=43.59  Aligned_cols=76  Identities=16%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-cccccccccEEEEEEE
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD   96 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   96 (216)
                      +++.|..|+||||+...+...-....        ..  ..-++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g--------~~--v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG--------KR--VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC--------Ce--EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            67889999999999888754332111        11  11111    6888999986432221 1345667888888887


Q ss_pred             CCChhhHHHHHH
Q 027985           97 VTDESSFNNIRN  108 (216)
Q Consensus        97 ~~~~~s~~~~~~  108 (216)
                      ... .+......
T Consensus        68 ~~~-~~~~~~~~   78 (99)
T cd01983          68 PEA-LAVLGARR   78 (99)
T ss_pred             Cch-hhHHHHHH
Confidence            764 34444433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.61  E-value=0.00056  Score=55.33  Aligned_cols=139  Identities=21%  Similarity=0.258  Sum_probs=70.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-CC----C---cccc--------------ceeeEEEEEE-E-----EECCeEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS-FT----T---SFIT--------------TIGIDFKIRT-I-----ELDGKRIKL   66 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~-~~----~---~~~~--------------~~~~~~~~~~-~-----~~~~~~~~~   66 (216)
                      ..-++|+|++|+||||++..|...- ..    .   ..++              ..+....... .     ......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3468899999999999998885321 00    0   0000              0011111000 0     001112578


Q ss_pred             EEEeCCCccccc----cccccccc-----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           67 QIWDTAGQERFR----TITTAYYR-----GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        67 ~i~D~~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      .|+||+|.....    ..+..+++     ...-.++|+|++...  ..+......+...    -+-=+|+||.|-..   
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~---  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD---  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            999999954221    11122221     123577888886532  2232322323221    23367789999532   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                        ..-.+-.+....+.++..++  +|++|
T Consensus       374 --~~G~il~i~~~~~lPI~ylt--~GQ~V  398 (432)
T PRK12724        374 --FLGSFLELADTYSKSFTYLS--VGQEV  398 (432)
T ss_pred             --CccHHHHHHHHHCCCEEEEe--cCCCC
Confidence              23345666777787776665  44444

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.58  E-value=0.0001  Score=53.40  Aligned_cols=113  Identities=15%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             EEEEEeCCCccccc-c--ccccc---ccc---ccEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           65 KLQIWDTAGQERFR-T--ITTAY---YRG---AMGILLVYDVT-DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        65 ~~~i~D~~G~~~~~-~--~~~~~---~~~---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      .+.|+|.||+-+.- .  ..+.+   +..   --+++|++|.. --++.+.+...+..+.....-.+|.|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            57899999965421 1  11111   111   22356666652 113334444555666666555789999999999843


Q ss_pred             CCCCCCHHHHHHH-------------------------------HHHhC-CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          135 SKRAVPTAKGQEL-------------------------------ADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       135 ~~~~~~~~~~~~~-------------------------------~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      .   ..+++++.|                               ...++ +.+++....+.+.|+.++..|-..+.-.
T Consensus       179 ~---~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~  253 (273)
T KOG1534|consen  179 D---KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYG  253 (273)
T ss_pred             h---hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence            2   111111111                               11223 3688888888899999998877666543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.54  E-value=0.00051  Score=47.05  Aligned_cols=26  Identities=35%  Similarity=0.556  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      ...++|.|++|+|||+|++.+...-.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999887654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.49  E-value=5.5e-05  Score=55.65  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=38.7

Q ss_pred             EEEEEEeCCCcccccccc------ccccccccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 IKLQIWDTAGQERFRTIT------TAYYRGAMGILLVYDVT------DESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      ..+.++|.||+-+.-..+      ...+++.+.-+.++...      +|..+  +...+..+.....-..|-|=|+.|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhH
Confidence            368999999976532211      12334455555554443      34333  33334444444444678899999999


Q ss_pred             CC
Q 027985          132 MD  133 (216)
Q Consensus       132 ~~  133 (216)
                      +.
T Consensus       175 l~  176 (290)
T KOG1533|consen  175 LL  176 (290)
T ss_pred             HH
Confidence            83

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.48  E-value=9.9e-05  Score=49.42  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.46  E-value=0.00011  Score=52.85  Aligned_cols=23  Identities=30%  Similarity=0.719  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.45  E-value=0.00011  Score=52.23  Aligned_cols=24  Identities=38%  Similarity=0.624  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .+|+|+|++|||||||.+.|....
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999987543

>PRK07261 topology modulation protein; Provisional

Probab=97.43  E-value=0.00012  Score=52.42  Aligned_cols=23  Identities=43%  Similarity=0.667  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+|+|+|++|||||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998643

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.43  E-value=0.0021  Score=44.29  Aligned_cols=106  Identities=16%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC
Q 027985           19 LLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        19 ~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (216)
                      +.-|.+|+|||++--.+...-... .....-.+..   .......+.+.|+|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKL-GKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            356788999999966653221100 0000000000   0001111679999999853  233346788899999999886


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           99 DESSFNNIRNWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        99 ~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                       ..++..+...++.+.... ...++.+|+|+.+.
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence             355555555555554432 24577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.42  E-value=0.0016  Score=46.81  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999988764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.41  E-value=0.0016  Score=54.55  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      =+++.|++|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4577999999999999998654

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.40  E-value=0.0008  Score=44.04  Aligned_cols=100  Identities=16%  Similarity=0.086  Sum_probs=58.5

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh
Q 027985           21 IGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE  100 (216)
Q Consensus        21 ~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (216)
                      =+..|+||||+...|...-.........-.+.     ..... ..+.|+|+|+....  .....+..+|.++++.+.+ .
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-----d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDL-----DLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-----CCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence            35577999998777643221110111111111     11111 16899999986432  2334677899999998776 4


Q ss_pred             hhHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 027985          101 SSFNNIRNWMRNIDQHAAD-NVNKILVGNK  129 (216)
Q Consensus       101 ~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK  129 (216)
                      .++..+..+++.+...... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            6777777777777665433 3466777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.40  E-value=0.00013  Score=50.29  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      |+++|+||||||||++.|....
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            7899999999999999987443

...

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.36  E-value=0.00022  Score=41.51  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -.+|.|+.|+|||||+.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998753

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.32  E-value=0.00015  Score=51.30  Aligned_cols=22  Identities=18%  Similarity=0.511  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.31  E-value=0.0016  Score=48.19  Aligned_cols=47  Identities=17%  Similarity=0.115  Sum_probs=32.5

Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                      ...+.+|.+|+|+|.+- .++...++..+..... . -.++.+|+||.|-
T Consensus       151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e  197 (255)
T COG3640         151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDE  197 (255)
T ss_pred             ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccc
Confidence            34678999999999973 6666665543333333 2 2689999999993

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.29  E-value=0.00027  Score=42.39  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      |++.|.+|+||||+.+.|...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6889999999999999987653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.23  E-value=0.00027  Score=51.62  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+..-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            47899999999999999887654

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.20  E-value=0.04  Score=39.00  Aligned_cols=146  Identities=13%  Similarity=0.123  Sum_probs=94.8

Q ss_pred             cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      .+....+.-.|+++|..+.++..|..++....-.          +. ..+.... .+.     .|..      ....-..
T Consensus         8 ~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~-l~Vh~a~-sLP-----Lp~e------~~~lRpr   64 (176)
T PF11111_consen    8 DKLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK-LKVHLAK-SLP-----LPSE------NNNLRPR   64 (176)
T ss_pred             ccCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------ee-EEEEEec-cCC-----Cccc------ccCCCce
Confidence            3445567889999999999999999999863211          11 1111110 000     1110      1111234


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      .|.++|++|.....++..++.-+..+......++-++ +++-... .+...+....+..++..++++++.+.-.+.++..
T Consensus        65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCf-l~t~a~~-~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCF-LATNAGR-ESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             eEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEE-EEcCCCc-ccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            7999999999999999998887766644333344444 4444433 2345678899999999999999999888877776


Q ss_pred             HHHHHHHHHHH
Q 027985          168 QVFFSIAREIK  178 (216)
Q Consensus       168 ~l~~~l~~~~~  178 (216)
                      .+-+.|.+.+.
T Consensus       143 ~lAqRLL~~lq  153 (176)
T PF11111_consen  143 SLAQRLLRMLQ  153 (176)
T ss_pred             HHHHHHHHHHH
Confidence            66666665553

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.20  E-value=0.00012  Score=57.91  Aligned_cols=53  Identities=23%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      +.|.++|.|++||||+||+|-...+ .....++.|  -....+....   ++.++|.||
T Consensus       308 ISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET--KVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  308 ISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET--KVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             eeeeeecCCCCchHHHHHHHhhcccccccCCCCcc--hHHHHHHHHh---ceeEecCCC

>PRK06217 hypothetical protein; Validated

Probab=97.19  E-value=0.00035  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+|+|+|.+|||||||.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998754

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.19  E-value=0.0012  Score=44.98  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999987653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.17  E-value=0.00036  Score=47.78  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .++|+|+.|+|||||++.+.+...
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            578999999999999998887653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.14  E-value=0.00037  Score=51.64  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -|+|+|++|||||||++-+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999775543

>PRK03839 putative kinase; Provisional

Probab=97.12  E-value=0.00041  Score=49.98  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      +|+|+|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988543

>PRK01889 GTPase RsgA; Reviewed

Probab=97.12  E-value=0.00058  Score=54.64  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      -.++|+|.+|+|||||+|.|++...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3789999999999999999986443

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.11  E-value=0.0004  Score=46.78  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998655

...

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.09  E-value=0.0016  Score=52.49  Aligned_cols=85  Identities=18%  Similarity=0.044  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|....+...-.      ..-+.|=+++|+|+.-.+...+...   .+.....   -.=+|+||.|...  +
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~---aF~e~l~---itGvIlTKlDGda--R  254 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK---AFNEALG---ITGVILTKLDGDA--R  254 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH---HHhhhcC---CceEEEEcccCCC--c
Confidence            57999999995443322211      2234677899999965544333322   2322211   1246779999622  1


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEe
Q 027985          138 AVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                         --.+.+.....+.++-++.
T Consensus       255 ---GGaALS~~~~tg~PIkFiG  273 (451)
T COG0541         255 ---GGAALSARAITGKPIKFIG  273 (451)
T ss_pred             ---chHHHhhHHHHCCCeEEEe
Confidence               1233445566677666665

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.07  E-value=0.00079  Score=49.65  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=23.5

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ++....-|+|+|++|+|||||++.|...
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4456677889999999999999999754

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.05  E-value=0.014  Score=41.64  Aligned_cols=84  Identities=12%  Similarity=0.003  Sum_probs=51.0

Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q 027985           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG  144 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  144 (216)
                      .+.|+|+|+....  .....+..+|.+|++++... .++..+..+++.+....  .....+|+|+.+...   ....+..
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~  135 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV  135 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence            6999999985432  23345678999999987764 45555656555555421  234678899998532   1222223


Q ss_pred             HHHHHHhCCcEE
Q 027985          145 QELADEYGIKFF  156 (216)
Q Consensus       145 ~~~~~~~~~~~~  156 (216)
                      +.+.+..+..++
T Consensus       136 ~~~~~~~~~~v~  147 (179)
T cd02036         136 EDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHhCCCEE
Confidence            445555565543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.05  E-value=0.00055  Score=46.32  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999988764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.00054  Score=51.13  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      |.|+|++|+|||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999886644

>TIGR00235 udk uridine kinase

Probab=97.04  E-value=0.00079  Score=49.69  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....-|+|.|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467899999999999999998754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.04  E-value=0.00065  Score=46.12  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTT   42 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~   42 (216)
                      -.++|+|++|+||||++..+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998776544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14530 adenylate kinase; Provisional

Probab=97.03  E-value=0.00059  Score=50.66  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      .+|+|+|+|||||||+.+.|.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.03  E-value=0.0006  Score=51.15  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=22.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...++++|+|.+|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            35689999999999999999998754

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.01  E-value=0.00058  Score=49.10  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.01  E-value=0.00061  Score=49.38  Aligned_cols=23  Identities=35%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .|+|+|++|+|||||++.|....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999996653

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.00  E-value=0.00067  Score=46.63  Aligned_cols=21  Identities=52%  Similarity=0.830  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=96.99  E-value=0.0053  Score=47.17  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=38.2

Q ss_pred             EEEEEEEeCCCccccccccccccc--------cccEEEEEEECCChhhHHHHHH------HHHHHHHhcCCCCcEEEEEe
Q 027985           63 RIKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSFNNIRN------WMRNIDQHAADNVNKILVGN  128 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~------~~~~l~~~~~~~~p~ivv~n  128 (216)
                      ++...+++|.|......+...|+.        ..|++|-|+|+...  ...+.+      |-+...+..-..   -+++|
T Consensus       145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~--~~~Lde~k~~g~i~EA~~QiA~AD---~II~N  219 (391)
T KOG2743|consen  145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHI--LKHLDEEKPDGLINEATRQIALAD---RIIMN  219 (391)
T ss_pred             CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhH--HhhhcccCcccchHHHHHHHhhhh---eeeec
Confidence            367788899997665554444432        36889999998531  111111      112222222111   56789


Q ss_pred             CCCCCC
Q 027985          129 KADMDE  134 (216)
Q Consensus       129 K~D~~~  134 (216)
                      |.|+..
T Consensus       220 KtDli~  225 (391)
T KOG2743|consen  220 KTDLVS  225 (391)
T ss_pred             cccccC
Confidence            999965

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.98  E-value=0.00055  Score=48.84  Aligned_cols=24  Identities=42%  Similarity=0.667  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .-++|.|++|+|||||++.|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999998877

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.98  E-value=0.00071  Score=44.12  Aligned_cols=21  Identities=43%  Similarity=0.776  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            347899999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.97  E-value=0.00073  Score=46.59  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .|+|+|+.++|||||+..|++.-.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999876543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.97  E-value=0.002  Score=46.07  Aligned_cols=44  Identities=27%  Similarity=0.175  Sum_probs=27.0

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |++++|+|+.++.+-.. ..+.+.+. ....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987532211 11122211 1122579999999999854

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK08233 hypothetical protein; Provisional

Probab=96.96  E-value=0.00082  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367889999999999999998764

>PRK10646 ADP-binding protein; Provisional

Probab=96.94  E-value=0.0043  Score=43.23  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -|++-|.-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998654

>PRK14532 adenylate kinase; Provisional

Probab=96.94  E-value=0.00076  Score=48.93  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+++|+|||||||+.+.|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.92  E-value=0.00078  Score=48.71  Aligned_cols=21  Identities=19%  Similarity=0.409  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      ..|+|+|.+||||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13949 shikimate kinase; Provisional

Probab=96.92  E-value=0.00087  Score=47.82  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      +|+|+|++|+||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998754

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.91  E-value=0.001  Score=48.21  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .=|+|+|++|||||||++.|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458999999999999999998653

>PRK00625 shikimate kinase; Provisional

Probab=96.91  E-value=0.00086  Score=47.98  Aligned_cols=21  Identities=24%  Similarity=0.388  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      +|+++|.+||||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.90  E-value=0.00085  Score=48.24  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -|+|+|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999998743

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.90  E-value=0.001  Score=49.85  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +++|+|+|+|||||||+.+.|..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998853

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.89  E-value=0.00096  Score=48.38  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -.++|+|++|+|||||++.+++..
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.0021  Score=51.03  Aligned_cols=45  Identities=16%  Similarity=0.115  Sum_probs=28.4

Q ss_pred             EEEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHH
Q 027985           63 RIKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIR  107 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~  107 (216)
                      .+.+.|+||+|.+........      -.-.-|-+|+|.|++-.+.-+...
T Consensus       183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa  233 (483)
T KOG0780|consen  183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA  233 (483)
T ss_pred             CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence            378999999995433222111      123468899999998665544433

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.88  E-value=0.00077  Score=46.25  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=21.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHh
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      +...+|+|.|-||+|||||..++.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~la   28 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLA   28 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHH
Confidence            567899999999999999999985

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.87  E-value=0.0019  Score=43.33  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      --|++-|+-|+|||||++.+..
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~   37 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLAR   37 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999864

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.86  E-value=0.0011  Score=47.97  Aligned_cols=22  Identities=23%  Similarity=0.595  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+|+|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>PRK14531 adenylate kinase; Provisional

Probab=96.85  E-value=0.001  Score=48.06  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .+|+++|+|||||||+.+.|..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.85  E-value=0.00093  Score=48.90  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      |+|.|++|||||||++.|....
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999987653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.85  E-value=0.0014  Score=46.68  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ..-+.|+|.+|||||||++++....
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHH
Confidence            3468899999999999999998654

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.82  E-value=0.001  Score=45.65  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .|+++|++|+|||+|++.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37999999999999999876433

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.81  E-value=0.0011  Score=47.80  Aligned_cols=20  Identities=20%  Similarity=0.532  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027985           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~   37 (216)
                      |+|+|+|||||||+.+.|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.81  E-value=0.0012  Score=47.36  Aligned_cols=21  Identities=33%  Similarity=0.393  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      -.++|+|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.81  E-value=0.0039  Score=42.94  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      --|++-|+-|+|||||.+.+...-
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~L   49 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGL   49 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHc
Confidence            357899999999999999986443

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.79  E-value=0.0011  Score=48.30  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998654

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.78  E-value=0.0013  Score=48.92  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57899999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.77  E-value=0.0014  Score=48.36  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..+.|+|.|.+|||||||.+.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998764

>PRK06547 hypothetical protein; Provisional

Probab=96.77  E-value=0.0016  Score=46.59  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....+.|+|.|.+|||||||.+.|...
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            456788899999999999999998754

>PRK04195 replication factor C large subunit; Provisional

Probab=96.76  E-value=0.019  Score=48.09  Aligned_cols=25  Identities=40%  Similarity=0.571  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .-.++|.|++|+||||+++.+....
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4568999999999999999997654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.76  E-value=0.0012  Score=49.93  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      ++++|+.|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            579999999999999999763

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.76  E-value=0.0012  Score=52.00  Aligned_cols=22  Identities=41%  Similarity=0.593  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++++|++|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999987643

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.76  E-value=0.0058  Score=44.78  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      |+|.|++||||||+++.+.....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999876543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.75  E-value=0.0014  Score=48.43  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.75  E-value=0.0013  Score=45.54  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46899999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.74  E-value=0.0014  Score=48.60  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-60
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-59
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		9e-57
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-56
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-56
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-56
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		7e-56
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-55
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-55
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-55
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-55
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-55
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-53
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-50
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-50
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-50
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-49
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-49
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-48
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-47
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-47
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-44
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-43
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-43
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-42
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		6e-42
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-41
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-41
4fmc_F	117	Espg-Rab1 Complex Length = 117		7e-41
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-40
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		8e-40
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-39
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		9e-39
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-38
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-38
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-38
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-38
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-38
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		4e-38
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-38
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-37
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-37
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		9e-37
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-36
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-36
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		5e-36
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-34
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-34
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-34
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-34
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-33
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-33
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-33
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		9e-33
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-33
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-32
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		4e-32
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-32
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-32
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		7e-32
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		7e-32
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		8e-32
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-32
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-31
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-31
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-31
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-31
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-31
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-31
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-31
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		4e-31
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-30
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-30
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-29
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-28
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		5e-28
2efc_B	181	Ara7-GdpATVPS9A Length = 181		5e-28
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-27
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-27
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-27
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-26
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-25
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-25
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		6e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		9e-25
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-24
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-24
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-24
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-23
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-23
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-23
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-23
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-23
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-23
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-23
1vg1_A	185	Gdp-bound Rab7 Length = 185		5e-23
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-23
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		8e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-22
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-22
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-22
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-22
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-22
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-21
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-20
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-20
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-19
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-19
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-19
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-19
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-19
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-19
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-19
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		5e-19
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-19
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-19
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-19
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		6e-19
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-19
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-19
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		6e-19
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		6e-19
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-19
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-19
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-19
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		7e-19
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-19
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-19
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-19
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		7e-19
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		8e-19
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-18
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-18
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-18
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-18
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-18
1byu_A	216	Canine Gdp-Ran Length = 216		1e-18
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-18
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-18
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-18
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-18
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-18
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-18
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-18
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-18
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-18
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-18
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-18
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-18
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-18
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		4e-18
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		5e-18
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		5e-18
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-18
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		5e-18
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		5e-18
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		7e-18
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		7e-18
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		9e-18
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		9e-18
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-17
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-17
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-17
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-17
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-17
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-16
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-16
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		9e-16
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-15
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-15
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-15
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-15
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-15
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-15
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-15
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-15
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-15
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		5e-15
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-15
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		7e-15
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-14
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		4e-14
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-14
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		9e-14
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-13
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-13
1mh1_A	186	Small G-Protein Length = 186		2e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-13
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-13
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-12
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-12
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-12
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-12
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-12
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		4e-12
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		4e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-12
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		8e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-11
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		7e-11
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		4e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		5e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		5e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		5e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		5e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		5e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		5e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		6e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		6e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		7e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		7e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		7e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		7e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		8e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		8e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		8e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		8e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		9e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		9e-10
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		9e-10
2kb0_A	178	Cdc42(T35a) Length = 178		9e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-09
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		1e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		4e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		7e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-07
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-07
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-07
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		6e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		9e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-05
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-05
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		4e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		5e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		5e-04
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		6e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		8e-04

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YDYL KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW+RNI++HA+ +V K+++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +++ KR V   +G++LA +YGIKF ETSAK N NVE  FF++AR+IK ++
Sbjct: 125 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 133/169 (78%), Gaps = 1/169 (0%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           DYL KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW+RNI++HA+ +V K+++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           ++ KR V   +G++LA +YGIKF ETSAK N NVE  FF++AR+IK ++
Sbjct: 124 ND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  216 bits (549), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 128/175 (73%), Gaps = 1/175 (0%)
Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL 66
           R   +YDYL KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKL
Sbjct: 17  RGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 76
Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV 126
           QIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LV
Sbjct: 77  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 136
Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           GNK D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 137 GNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK 
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 132 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  214 bits (546), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 130/171 (76%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLR                  KIRTI L+ K +KLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD  SF+N++ W++ ID++A +NVNK+LVGNK 
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKC 124
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  SKR V + +G+ELAD +GIKF ETSAK  +NVEQ F ++A EIK+R+
Sbjct: 125 DL-VSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 122 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  213 bits (542), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGK+CLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK 
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 132 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/171 (59%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ ID++A++NVNK+LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 125 DL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/171 (59%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ ID++A++NVNK+LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 125 DL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 125/170 (73%), Gaps = 1/170 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK 
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F + A EIK+R
Sbjct: 149 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVG K 
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKC 123
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 124 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 122 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           FRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK D+  +K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTK 119
Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           + V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 120 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 125/170 (73%), Gaps = 2/170 (1%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + +++HA D    +LVGNK+D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           M+   R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 137 ME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 131/209 (62%), Gaps = 9/209 (4%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIW 69
           ++YDYL KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62
Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ ID++A   V K+LVGNK
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE 189
            D+ + KR V     +E AD   + F ETSA  + NVE  F ++AR+IK+ + + +    
Sbjct: 123 CDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 190 PQTIRISKPDPAN----GSAAAPEKSACC 214
            Q     K D  N    G +       CC
Sbjct: 182 TQ----KKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  193 bits (490), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 131/209 (62%), Gaps = 9/209 (4%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIW 69
           ++YDYL KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62
Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ ID++A   V K+LVGNK
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE 189
            D+ + KR V     +E AD   + F ETSA  + NVE  F ++AR+IK+ + + +    
Sbjct: 123 CDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 190 PQTIRISKPDPAN----GSAAAPEKSACC 214
            Q     K D  N    G +       CC
Sbjct: 182 TQ----KKEDKGNVNLKGQSLTNTGGCCC 206

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 124/169 (73%), Gaps = 2/169 (1%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + +++HA D    +LVGNK+DM
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +   R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 123/167 (73%), Gaps = 2/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + +++HA D    +LVGNK+DM+ 
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 125
Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
             R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 126 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 120/170 (70%), Gaps = 1/170 (0%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIW 69
           ++YDYL KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIW
Sbjct: 16  SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 75
Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ ID++A   V K+LVGNK
Sbjct: 76  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 135
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
            D+ + KR V     +E AD   + F ETSA  + NVE  F ++AR+IK+
Sbjct: 136 CDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 121/169 (71%), Gaps = 2/169 (1%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D + K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFRTITTAYYRGA GI+LVYD+TDE +F NI+ W + +++HA D    +LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +   R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 121/169 (71%), Gaps = 2/169 (1%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D + K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFRTITTAYYRGA GI+LVYDVTDE +F NI+ W + +++HA D    +LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +   R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 9   RADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQI 68
           + ++DY+ KLL+IG+S VGK+  L R                  K++T+    KR+KLQI
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128
           WDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I  ++ DN   ILVGN
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136
Query: 129 KADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
           K DM+E +R VPT KGQ LA++ G  FFE SAK N +V Q F  +   I  ++ +S
Sbjct: 137 KCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DYD+L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I+Q+  D+V +ILVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKN 123
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           D D  ++ V T    + A + GI+ FETSAK N NVE++F  I 
Sbjct: 124 D-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  170 bits (431), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           ++DY+ K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I  ++ DN   +LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
           DM E +R V + +G++LAD  G +FFE SAK N NV+Q F
Sbjct: 121 DM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 110/171 (64%), Gaps = 1/171 (0%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           DY+ KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I  ++ DN   ILVGNK D+
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
            E +R VP   G+ LAD+ G +FFE SAK N NV+QVF  +   I +++ E
Sbjct: 140 -EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           Y YL K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH+  N+  +L+GNK+D
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           + ES+R V   +G+  A E+G+ F ETSAKT  NVE+ F + A+EI ++
Sbjct: 127 L-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 1/168 (0%)
Query: 14  YLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           YL K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133
           QE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH++ N+  +L+GNK+D+ 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL- 138
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           ES+R V   +G+  A E+G+ F ETSAKT  NVE+ F + A+EI +++
Sbjct: 139 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 118/197 (59%), Gaps = 2/197 (1%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           +DY  K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AG ER+RTITTAYYRGA G +L YD+T+E SFN +++W   I  ++ DN   +LVGNK D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQ 191
             E +R V + +G++LAD  G +FFE SAK N NV+Q F  +   I ++  ES   A+P 
Sbjct: 125 X-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADP- 182
Query: 192 TIRISKPDPANGSAAAP 208
            +  +K  P      AP
Sbjct: 183 AVTGAKQGPQLTDQQAP 199

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 76/115 (66%), Positives = 91/115 (79%)
Query: 18  LLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERF 77
           LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           RTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXX-XKIRTIELDGKRIKLQIWD 70
           YD   K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           D    +R V    G++LA EYG+ F ETSAKT  NV+  F +IA+E+K+R
Sbjct: 127 D-SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  159 bits (403), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 107/169 (63%), Gaps = 1/169 (0%)
Query: 9   RADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQI 68
           R  YDYL K++LIGDSGVGKS LL R                    R+I++DGK IK QI
Sbjct: 14  RGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 73
Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128
           WDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGN
Sbjct: 74  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 133
Query: 129 KADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K+D+    RAVPT + +  A++ G+ F ETSA  + NVE  F +I  EI
Sbjct: 134 KSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 5   PARARA----DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
           P RA      +YDYL K++LIGDSGVGKS LL R                    R+I++D
Sbjct: 15  PGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD 74
Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N
Sbjct: 75  GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134
Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +  +LVGNK+D+    RAVPT + +  A++ G+ F ETSA  + NVE  F +I  EI
Sbjct: 135 IVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 120/198 (60%), Gaps = 6/198 (3%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DYD L K++LIGDSGVGKS LL R                    RT+E++GKRIK QIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           D+    RAVPT + +  A E  + F ETSA  + NV++ F  +   I Q++    SK + 
Sbjct: 129 DL-AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV----SKHQM 183
Query: 191 QTIRISKPDPANGSAAAP 208
                S    ANG A+AP
Sbjct: 184 DLGDSSANGNANG-ASAP 200

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 5   PARARA----DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
           P RA      +YDYL K++LIGDSGVGKS LL R                    R+I++D
Sbjct: 15  PGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD 74
Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GK IK QIWDTAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N
Sbjct: 75  GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134
Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +  +LVGNK+D+    RAVPT + +  A++ G+ F ETSA  + NVE  F +I  EI
Sbjct: 135 IVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YDYL K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +    RAVPT + +  A++  + F ETSA  + NVE+ F +I  EI
Sbjct: 122 L-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 2/170 (1%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD+L KL+L+GD+ VGK+C++ R                   ++T+E+ GKR+KLQIWDT
Sbjct: 26  YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFRTIT +YYR A G +L YD+T  SSF ++ +W+ ++ ++A  N+ ++L+GNK+D
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 132 MDESKRAVPTAKGQELADEYGIKF-FETSAKTNFNVEQVFFSIAREIKQR 180
           + E  R V  A+ Q LA+ Y I    ETSAK + NVE+ F  +A E+  R
Sbjct: 146 LSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 4   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 123
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D+    RAVPT + +  A++ G+ F ETSA  + NVE  F +I  EI
Sbjct: 124 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
Query: 4   APARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKR 63
            P  +  DYD+L K++LIG++GVGK+CL+ R                   I+T+E++G++
Sbjct: 15  VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK 123
           +KLQIWDTAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R I+Q+A++ V  
Sbjct: 75  VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 134
Query: 124 ILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           +LVGNK D+ E +R V   + +E ++   + + ETSAK + NVE++F  +A
Sbjct: 135 VLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D+    RAVPT + +  A++ G+ F ETSA  + NVE  F +I  EI
Sbjct: 121 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YDYL K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+
Sbjct: 67  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 126
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D+    RAVPT + +  A++ G+ F ETSA  + NVE  F +I  EI
Sbjct: 127 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 5/181 (2%)
Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
           MATAP     +Y Y+ K ++IGD GVGKSCLL +                    R IE+ 
Sbjct: 20  MATAPY----NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS 75
Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           G++IKLQIWDTAGQ RFR +T +YYRGA G L+VYD+T  S++N++ +W+ +       N
Sbjct: 76  GQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 135
Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
              IL+GNKAD+ E++R V   + ++ A+E G+ F E SAKT  NVE  F   A++I Q 
Sbjct: 136 TVIILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 194
Query: 181 L 181
           +
Sbjct: 195 I 195

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG 61
           ATAP     +Y Y+ K ++IGD GVGKSCLL +                    R IE+ G
Sbjct: 6   ATAPY----NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 61
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           ++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +       N 
Sbjct: 62  QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT 121
Query: 122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
             IL+GNKAD+ E++R V   + ++ A+E G+ F E SAKT  NVE  F   A++I Q
Sbjct: 122 VIILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D+ +++++IG  GVGK+ L+ R                  KI+T+EL GK+I+LQIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERF +IT+AYYR A GI+LVYD+T + +F+++  WM+ ID++A+++   +LVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 133 DESKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
            E+ R +   +G++ A +  G++F E SAK NFNV+++F  +  +I +++
Sbjct: 144 -ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 126/216 (58%), Gaps = 13/216 (6%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------G 61
            DYDYLIKLL +GDSGVGK+  L R                  + + +  D        G
Sbjct: 6   GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 62  K--RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-A 118
           K  ++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNWM  +  +A  
Sbjct: 66  KAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 125
Query: 119 DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +N + +L+GNKAD+ + +R V   + +ELA++YGI +FETSA T  NVE+   ++   I 
Sbjct: 126 ENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 179 QRLVESDSKAE-PQTIRISKPDPANGSAAAPEKSAC 213
           +R+ +   K + P T+        +G   A +K AC
Sbjct: 185 KRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 121/209 (57%), Gaps = 19/209 (9%)
Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK---- 62
           R   DYDYLIKLL +GDSGVGK+  L R                  + + +  + +    
Sbjct: 17  RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76
Query: 63  ------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH 116
                 ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNWM  +  +
Sbjct: 77  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 117 A-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
           A  +N + +L+GNKAD+ + +R V   + +ELAD+YGI +FETSA T  NVE+   ++  
Sbjct: 137 AYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195
Query: 176 EIKQRLVESDSKAEPQTIRISKPDPANGS 204
            I +R+ +   K +        PD  NG 
Sbjct: 196 LIMKRMEQCVEKTQ-------IPDTVNGG 217

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 1/160 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DYDYL K++LIGDSGVGKS LL R                    RTIE++ K+IK QIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAG ER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
           D+    RAVPT + +  A E  + F ETSA  + NV++ F
Sbjct: 126 DL-AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 1/170 (0%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD+L K L+IG++G GKSCLL +                    + I + GK +KLQIWDT
Sbjct: 7   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 66
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    A+ N+  IL GNK D
Sbjct: 67  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +D + R V   +    A E  + F ETSA T  NVE+ F   AR+I  ++
Sbjct: 127 LD-ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 119/196 (60%), Gaps = 13/196 (6%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------G 61
            DYDYLIKLL +GDSGVGK+  L R                  + + +  D        G
Sbjct: 6   GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 62  K--RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-A 118
           K  ++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNWM  +  +A  
Sbjct: 66  KAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 125
Query: 119 DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +N + +L+GNKAD+ + +R V   + +ELA++YGI +FETSA T  NVE+   ++   I 
Sbjct: 126 ENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 179 QRLVESDSKAE-PQTI 193
           +R+ +   K + P T+
Sbjct: 185 KRMEKCVEKTQVPDTV 200

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 115/199 (57%), Gaps = 30/199 (15%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------- 60
            DYDYLIK L +GDSGVGK+ +L +                   I T+ +D         
Sbjct: 6   GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF---------ITTVGIDFREKRVVYR 56
Query: 61  ----------GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM 110
                     G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNW+
Sbjct: 57  ANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWI 116
Query: 111 RNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169
             +  HA ++N + +L GNK+D+ E +RAV   + +ELA++YGI +FETSA    N+   
Sbjct: 117 SQLQMHAYSENPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175
Query: 170 FFSIAREIKQRLVESDSKA 188
              +   I +R+  S  K+
Sbjct: 176 IEMLLDLIMKRMERSVDKS 194

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++L GD+ VGKS  L+R                  +++T+ +DG+R  LQ+WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM---- 132
           FR+I  +Y+R A G+LL+YDVT E SF NIR W+  I+  A + V  +LVGNKAD+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 133 -DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             E ++ VP   G++LA  YG  F ETSAK   N+ +    +ARE+K+R
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD+L K L+IG++G GKSCLL +                    + I + GK +KLQIWDT
Sbjct: 8   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    A+ N+  IL GNK D
Sbjct: 68  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +D + R V   +    A E  + F ETSA T  +VE+ F   AR+I
Sbjct: 128 LD-ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL 66
           R   DY+++ K++LIG+SGVGK+ LL R                    RT+ L    +K 
Sbjct: 17  RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV 126
           QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LV
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           GNK+D+ ++ R VPT + +  A+  G+ F ETSA  + NVE  F ++ +EI
Sbjct: 137 GNKSDLSQA-REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 1/169 (0%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D+L K L+IG +G GKSCLL +                    R + + GK +KLQIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFR++T +YYRGA G LLVYD+T   ++N++  W+ +    A+ N+  IL GNK D+
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D  +R V   +    A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 143 D-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 1/167 (0%)
Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DY+++ K++LIG+SGVGK+ LL R                    RT+ L    +K QIWD
Sbjct: 6   DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 65
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAG ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 125
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D+ ++ R VPT + +  A+  G+ F ETSA  + NVE  F ++ +EI
Sbjct: 126 DLSQA-REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL-DGKRIKLQIWD 70
           YDYL K++LIGDSGVGKS LL R                    ++I+L + K IK QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQER+R IT+AYYRGA+G LLVYD+T ++SF NI  W++ +  +A  N+  +LVGNK+
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D+ +  R +      + A +  + F ETSA    NVE  F  +  EI
Sbjct: 124 DL-KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Query: 12  YDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD+L K L+IG++G GKSCLL +                    + I + GK +KLQIWDT
Sbjct: 5   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AG ERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    A+ N+  IL GNK D
Sbjct: 65  AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +D + R V   +    A E  + F ETSA T  +VE+ F   AR+I
Sbjct: 125 LD-ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 116/205 (56%), Gaps = 19/205 (9%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------G 61
            DYDYLIKLL +GDSGVGK+  L R                  + + +  D        G
Sbjct: 6   GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 62  K--RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-A 118
           K  ++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   +  +A  
Sbjct: 66  KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 119 DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +N + +L+GNKAD+ + +R V   + +ELA++YGI +FETSA T  NVE+   ++   I 
Sbjct: 126 ENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 179 QRLVESDSKAEPQTIRISKPDPANG 203
           +R  +   K +        PD  NG
Sbjct: 185 KRXEKCVEKTQV-------PDTVNG 202

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 126
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 127 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 12/182 (6%)
Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------G 61
            DYDYLIKLL +GDSGVGK+  L R                  + + +  D        G
Sbjct: 6   GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASG 65
Query: 62  K--RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-A 118
           K  ++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   +  +A  
Sbjct: 66  KAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYC 125
Query: 119 DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +N + +L+GNKAD+ + +R V   + +ELA++YGI +FETSA T  NVE+   ++   I 
Sbjct: 126 ENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 179 QR 180
           +R
Sbjct: 185 KR 186

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 11/181 (6%)
Query: 5   PARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRI 64
           PAR+R     + K+++IGDS VGK+CL  R                  + R +++DG+RI
Sbjct: 24  PARSR-----IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 78
Query: 65  KLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVN 122
           K+Q+WDTAGQERFR ++   YYR    ++ VYD T+ +SF+++  W+    QH  A+++ 
Sbjct: 79  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIP 138
Query: 123 KILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT---NFNVEQVFFSIAREIKQ 179
           +ILVGNK D+  S   VPT   Q+ AD +    FETSAK    N +VE +F ++A ++K 
Sbjct: 139 RILVGNKCDL-RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKS 197
Query: 180 R 180
Sbjct: 198 H 198

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+  +F   +NW++ + + A+ N+   L GNKAD+  S
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-AS 124
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT  NV ++F +IA+++
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 126
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 127 KRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+  +F   +NW++ + + A+ N+   L GNKAD+  S
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-AS 122
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT  NV ++F +IA+++
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNKAD+  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 124
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++
Sbjct: 125 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 104/171 (60%), Gaps = 6/171 (3%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADM 132
           ERFR ++   YYR    ++ VYD+T+ +SF+++  W+    QH  A+++ +ILVGNK D+
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKT---NFNVEQVFFSIAREIKQR 180
             S   VPT   Q+ AD + +  FETSAK    N +VE +F ++A ++K  
Sbjct: 140 -RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+  +F   +NW++ + + A+ N+   L GNKAD+  S
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-AS 124
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           KRAV   + Q  AD+  + F ETSAKT  NV ++F +IA+++
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN-VNKILVGNKADMDE 134
           RFRT+T +YYRGA G++LVYDVT   +F  + NW+  ++ +   N +   LVGNK  +D+
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNK--IDK 133
Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
             R V   +G + A ++   F E SAKT   V+  F  +  +I Q
Sbjct: 134 ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 9/178 (5%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +++ LD   +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T++ +F   + W++ + + A+ ++   L GNKAD+  +
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL-AN 127
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTI 193
           KR V   + Q  AD+  + F ETSAKT  NV  +F +IA+++         K+EPQ +
Sbjct: 128 KRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL--------PKSEPQNL 177

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 100/174 (57%), Gaps = 10/174 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRI-KLQIWDTAG 73
           ++K++++GDSGVGK+ L+ R                    + + +DG ++  +Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK------ILVG 127
           QERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA  NVN       +++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILG 125
Query: 128 NKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           NK D +ESK+ V     QELA   G I  F TSAK   NV+  F  IAR   Q+
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LR                    + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + A+ ++   LVGNK D   +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
             +R V   +G++LA+E G+ FFETSAKT  NV  VF  I  +I
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG 61
           +  P  +RA   Y  K++L+G+  VGK+ L+LR                    + + + G
Sbjct: 10  SLVPRGSRA---YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGG 66
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           KR+ L IWDTAGQERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +
Sbjct: 67  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 126
Query: 122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
              +VGNK D+ E +R V   + +  A+  G K + TSAK N  +E++F  + +    R+
Sbjct: 127 CLCIVGNKIDL-EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK----RM 181
Query: 182 VES 184
           +E+
Sbjct: 182 IET 184

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 1/161 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD G GKS L+LR                    +T+ ++   +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           + ++   YYRGA   ++V+DVT+++SF   + W++ +      N+   L GNK+D+ ++ 
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA- 132
Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           R V     Q  A E G+ F ETSAKT  NV+++F+ IAR +
Sbjct: 133 RKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
Query: 14  YLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           Y  K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133
           QERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL- 123
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
           E +R V   + +  A+  G K + TSAK N  +E++F  + +    R++E+
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK----RMIET 170

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
Query: 14  YLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           Y  K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133
           QERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL- 123
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
           E +R V   + +  A+  G K + TSAK N  +E++F  + +    R++E+
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK----RMIET 170

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T+    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RF ++   YYRG+   ++VYD+T + SF  ++ W++ + +H  +N+   + GNK D+ + 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
            R VP    +E A+  G    ETSAK   N+E++F  I+R+I
Sbjct: 144 -REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
            R V     ++ AD     F ETSAK   N+ ++F  I+R I
Sbjct: 126 -REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
            R V     ++ AD     F ETSAK   N+ ++F  I+R I
Sbjct: 127 -REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 111/205 (54%), Gaps = 11/205 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       A+    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTAKGQELA-DEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE 189
           D +   R V T + Q     +  I +FETSAK   NVEQ F +IAR   ++  E +   E
Sbjct: 128 DFE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PQTIRISKPDPANGSAAAPEKSAC 213
            P+ I++ K D A  SA   E  +C
Sbjct: 186 FPEPIKLDKNDRAKASA---ESCSC 207

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 112/205 (54%), Gaps = 11/205 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       A+    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTAKGQELA-DEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE 189
           D++   R V T + Q     +  I +FETSAK   NVEQ F +IAR   ++  E +   E
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PQTIRISKPDPANGSAAAPEKSAC 213
            P+ I++ K + A  SA   E  +C
Sbjct: 186 FPEPIKLDKNERAKASA---ESCSC 207

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF+    W+ ++      +V  +LVGNK D+ + 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD- 133
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           KR V T +G+  A E  + F ETSAK  +NV+Q+F  +A
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 11/205 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       A+    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTAKGQELA-DEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE 189
           D++   R V T + Q     +  I +FETSAK   NVEQ F +IAR   ++  E +   E
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PQTIRISKPDPANGSAAAPEKSAC 213
            P+ I++ K D A  SA   E  +C
Sbjct: 186 FPEPIKLDKNDRAKASA---ESCSC 207

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  +LVGNK D+ + 
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD- 121
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           KR +   +G++ A E  + F ETSAKT +NV+Q+F  +A
Sbjct: 122 KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVA 160

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  +LVGNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           KR V   +G+  A E  + F ETSAK  +NV+Q+F  +A
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
           D+ E  R V T + Q    + G   +FETSAK + NV   F    R I
Sbjct: 131 DIKE--RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++L+GD GVGKS L+ R                    R +E+DG+ + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKA 130
           ERF+++ T +YRGA   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 131 DMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
           D ++  R V T + Q    E G   + ETSAK + NV   F    R++
Sbjct: 127 DKED--RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  +LVGNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 120
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           KR V   +G+  A E  + F ETSAK  +NV+Q+F  +A
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 2/184 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  +LVGNK D+ + 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 132
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESD-SKAEPQTIR 194
           KR V   +G+  A E  + F ETSAK  +NV+Q+F  +A  +       D S+ +   I+
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
Query: 195 ISKP 198
           + KP
Sbjct: 193 LEKP 196

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADM 132
           E +  I   Y+R   G LLV+ +T+  SF     +   I +  A  D +  ++VGNK+D+
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +E +R VP  + +  A+E+G+++ ETSAKT  NV++VFF + REI+ +
Sbjct: 126 EE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
           D+  S+R V T + Q    + G   +FETSAK   NV   F    R +
Sbjct: 129 DI--SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADM 132
           E +  I   Y+R   G LLV+ +T+  SF     +   I +  A  D +  ++VGNK+D+
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +E +R VP  + +  A+E+G+++ ETSAKT  NV++VFF + REI+ +
Sbjct: 122 EE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
           D+  S+R V T + Q    + G   +FETSAK   NV   F    R +
Sbjct: 127 DI--SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       A+    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTAKGQELA-DEYGIKFFETSAKTNFNVEQVFFSIAR 175
           D++   R V T + Q     +  I +FETSAK   NVEQ F +IAR
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 2/184 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  +LVGNK D+ + 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 135
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESD-SKAEPQTIR 194
           KR V   +G+  A E  + F ETSAK  +NV+Q+F  +A  +       D S+ +   I+
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 195
Query: 195 ISKP 198
           + KP
Sbjct: 196 LEKP 199

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  +LVGNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           KR V   +G+  A E  + F ETSAK  +NV+Q+F  +A
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 121
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           E KR V   + +  AD++ + + ETSAKT  NV++VFF + REI+ R
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 131
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + REI+ R +E
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 181

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 135
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + REI+ R +E
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + REI+ R +E
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 173

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +G+  VGK+ ++ R                    +T+ LD   ++LQ+WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+  SF N   W+++I      +V   LVGNK D+ +  
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL- 121
Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
           R V   +G + A EY   F ETSAK   N++ +F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + REI+ R +E
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 173

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I +   +D+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            R V + + Q+LA  YGI + ETSAKT   VE  F+++ REI+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I +   +D+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            R V + + Q+LA  YGI + ETSAKT   VE  F+++ REI+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I +   +D+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            R V + + Q+LA  YGI + ETSAKT   VE  F+++ REI+Q 
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I +   +D+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            R V + + Q+LA  YGI + ETSAKT   VE  F+++ REI+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I +   +++V  +LVGNK+D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--P 122
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            R V T + Q+LA  YGI F ETSAKT   V+  F+++ REI++ 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I +   +++V  +LVGNK D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--P 122
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            R V T + Q+LA  YGI F ETSAKT   V+  F+++ REI++ 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++G+  VGKS ++ R                    R I+++ + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD-MDE 134
            F  IT AYYRGA   +LV+  TD  SF  I +W   +     D +   LV NK D +D+
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDD 124
Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           S   +   + + LA    ++F+ TS K + NV +VF  +A +  Q+
Sbjct: 125 S--CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +    D+V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREI 177
           +R V   +GQ LA ++    F E+SAK+  NV ++F+ + R+I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +    D+V  ILVGNK D+ E 
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 124
Query: 136 KRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREI 177
           +R V   +GQ LA ++    F E+SAK+  NV ++F+ + R+I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 48  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 108 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 165
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 166 VREIRQH 172

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK+D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 165 VREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 165 VREIRQH 171

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +    ++V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREI 177
           +R V   +GQ LA ++    F E+SAK+  NV ++F+ + R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
           MA+A   A+ +     KL+L+GD G GK+  + R                         +
Sbjct: 4   MASA---AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTN 60
Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
              IK  +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N
Sbjct: 61  RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCEN 119
Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +  +L GNK D+ + K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 120 IPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 49  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 109 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 166
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 167 VREIRQH 173

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +    ++V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREI 177
           +R V   +GQ LA ++    F E+SAK+  NV ++F+ + R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD 60
           MA+A   A+ +     KL+L+GD G GK+  + R                         +
Sbjct: 4   MASA---AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN 60
Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
              IK  +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N
Sbjct: 61  RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCEN 119
Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI--- 177
           +  +L GNK D+ + K     AK      +  +++++ SAK+N+N E+ F  +AR++   
Sbjct: 120 IPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176
Query: 178 -KQRLVESDSKAEPQTIRISKPDPA 201
                V   + A P+ +     DPA
Sbjct: 177 PNLEFVAMPALAPPEVVM----DPA 197

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 60  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+    R V T +  ELA  YGI F ETSAKT   VE  F+++
Sbjct: 120 RVKDSDDVPMVLVGNKCDL--PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177
Query: 174 AREIKQ 179
            REI+Q
Sbjct: 178 VREIRQ 183

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 186
Query: 192 TIRISKPDPA 201
            +     DPA
Sbjct: 187 VVM----DPA 192

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+
Sbjct: 123 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 179
Query: 192 TIRISKPDPA 201
            +     DPA
Sbjct: 180 VVM----DPA 185

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 186
Query: 192 TIRISKPDPA 201
            +     DPA
Sbjct: 187 VVM----DPA 192

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 186
Query: 192 TIRISKPDPA 201
            +     DPA
Sbjct: 187 VVM----DPA 192

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGN+ D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNRCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++ +DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPE 186
Query: 192 TIRISKPDPA 201
            +     DPA
Sbjct: 187 VVX----DPA 192

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +KL + G +GVGKS L++R                  + +   +D + + ++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE 87
Query: 76  RFRTIT-TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMD 133
              TI    + R   G +LVYD+TD  SF  +      +D+     NV  ILVGNKAD+D
Sbjct: 88  D--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTN-FNVEQVFFSIAREIKQR 180
            S R V T +G++LA E    F+E SA T   N+ ++F+ + RE+++R
Sbjct: 146 HS-RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 8/181 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++    +   V S + A P+
Sbjct: 132 KVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPE 188
Query: 192 T 192
Sbjct: 189 V 189

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I 
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +++V  +LVGNK+D+    R V T + Q+LA  YGI F ETSAKT   V+  F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 174 AREIKQR 180
            REI++ 
Sbjct: 161 VREIRKH 167

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I 
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +++V  +LVGNK+D+    R V T + Q+LA  YGI F ETSAKT   V+  F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 174 AREIKQR 180
            REI++ 
Sbjct: 161 VREIRKH 167

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG+E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            RE +Q 
Sbjct: 160 VREFRQH 166

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 130 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 12/190 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           ++  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 186
Query: 192 TIRISKPDPA 201
            +     DPA
Sbjct: 187 VVM----DPA 192

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAGQE    +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 130 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 47  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 165 VREIRQH 171

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HA 117
           +D +  +L I DTAGQE F  +   Y R   G LLV+ VTD  SF  I  + R I +   
Sbjct: 48  IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 118 ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
            D    IL+GNKAD+D  +R V   +GQ+LA +  + + E SAK   NV+Q F  + R I
Sbjct: 108 RDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
Query: 178 KQ 179
           ++
Sbjct: 167 RK 168

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I 
Sbjct: 42  KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +D+V  +LVGNK D+  + R V + + Q+LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 AREIKQR 180
            REI+Q 
Sbjct: 160 VREIRQH 166

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI----KQRLVESDSKAEPQ 191
           K     AK      +  +++++ SAK+N+N E+ F  +AR++        V   + A P+
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 186
Query: 192 TIRISKPDPA 201
            +     DPA
Sbjct: 187 VVM----DPA 192

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I ++   I 
Sbjct: 60  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           +   +++V  +LVGNK D+    R V T + Q+LA  YGI F ETSAKT   V+  F+++
Sbjct: 120 RVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 177
Query: 174 AREIKQR 180
            REI++ 
Sbjct: 178 VREIRKH 184

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 125 KVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 124 KVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 132 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           K     AK      +  +++++ SAK+N+N E+ F  +AR++
Sbjct: 126 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD 133
           E +  +    YRGA   LL + +  ++S+ NI + W+  + +H A  +  +LVG K D+ 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           + K+         ++ TA+G+EL    G +++ E S+KT  NV+ VF
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 63  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN 122
            IK  IWDTAGQER+ +I   YYRGA   ++V+D+++ ++ +  + W+  +    + N  
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYI 149
Query: 123 KILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLV 182
            ILV NK  +D++K  V   + Q+ A +  + F +TSAKT  N++ +F+ +A EI + ++
Sbjct: 150 IILVANK--IDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD G GK+ LL+                    +  +++ GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDE 134
            +  +   +Y  A  +LL +DVT  +SF+NI N W   ++ H    V  I+VG K D+ +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRK 152
Query: 135 SK-----------RAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
            K             V   +GQE+A   G + + E SA+ + NV  VF
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HA 117
           +DG   +L I DTAGQE F  +   Y R   G LLV+ + D  SFN +      I +   
Sbjct: 52  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 118 ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
            D+   +LVGNKAD+ ES+R VP ++       + + +FE SAK   NV++ F  + R +
Sbjct: 112 RDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Query: 178 KQ 179
           ++
Sbjct: 171 RK 172

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  +E+DG+R++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLI-VNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQED 70
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM--- 132
           +  +    Y  +  +L+ + +    S  N++  W+  +  H    V  ILVG K D+   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 133 --------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAR 175
                    E ++ V + +GQ +AD+ G   ++E SAKT + V +VF +  R
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 69
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 128
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + W+  + +H A  V  ILVG K D+ 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 134 ESKR-------AVP--TAKGQELADEYGIK-FFETSAKTNFNVEQVF 170
           + K+       AVP  T +G+EL    G   + E S+KT  NV+ VF
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 68
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 13/176 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+CLL+                       + ++G  + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + W+  + +H A  V  +LVG K D+ 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 134 ESKR-------AVP--TAKGQELADEYGIK-FFETSAKTNFNVEQVFFSIAREIKQ 179
           + K+       AVP  T +G+EL    G   + E S+K+  NV+ VF +  R + Q
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLI-VFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +       Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ES---------KRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E          +  V  A+G+++A+  G   + E SAKT   V +VF
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 124
Query: 134 ESKR---------AVPTAKGQELADEY-GIKFFETSAKTNFNVEQVF 170
           E  R          V + +G+++A+      + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 144
Query: 134 ESKR---------AVPTAKGQELADEY-GIKFFETSAKTNFNVEQVF 170
           E  R          V + +G+++A+      + E SAKT   V +VF
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQD 144
Query: 134 ESKR---------AVPTAKGQELADEY-GIKFFETSAKTNFNVEQVF 170
           E  R          V + +G+++A+      + E SAKT   V +VF
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 11/174 (6%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG+ + L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + WM  + + A  NV  +LVG K D+ 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126
Query: 134 ESK-------RAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQ 179
           + K         + + +G+EL  + G   + E S+KT  NV+ VF +  + + Q
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 68
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 134 ESKR---------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           E  R          V   +G+++A+  G   + E SAKT   V +VF
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 DQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNVEQVFF 171
            +    ++   ILV NK D+    R V   +G+E+A +Y I + ETSAK    NV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 172 SIAREIKQR 180
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 DQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNVEQVFF 171
            +    ++   ILV NK D+    R V   +G+E+A +Y I + ETSAK    NV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 172 SIAREIKQR 180
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 51  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 110
Query: 114 DQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNVEQVFF 171
            +    ++   ILV NK D+    R V   +G+E+A +Y I + ETSAK    NV++ F 
Sbjct: 111 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 169
Query: 172 SIAREIKQR 180
            + R I+Q+
Sbjct: 170 DLVRVIRQQ 178

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 15/200 (7%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD-GKRIKLQIWDTAGQE 75
           K+ LIGD GVGK+  + R                     T   D G  IK  +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           +   +   YY GA G +L +DVT   +  N+  W++       +    ++  NK D+ ++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI-KN 131
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRI 195
           ++ +      E+      ++FE SAKT  N    F  +AR    R         P  I +
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR---------PDLIFV 182
Query: 196 S----KPDPANGSAAAPEKS 211
           S    +P   N    +PE+S
Sbjct: 183 SNVNLEPTEVNYDYHSPEES 202

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 58  ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-H 116
           E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I +  
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 117 AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNVEQVFFSIAR 175
             ++   ILV NK D+    R V   +G+E+A +Y I + ETSAK    NV++ F  + R
Sbjct: 120 DRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
Query: 176 EIKQR 180
            I+Q+
Sbjct: 179 VIRQQ 183

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLI-VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADM--D 133
           +  +    Y     IL+ + V    S  NI   W+  + +H   NV  ILV NK D+  D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSD 144
Query: 134 ESKRA---------VPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           E  R          V T  G+ +A       + E SAKT   V +VF +  R   Q+
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 4/125 (3%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN-- 112
           + IE+D     L+I DTAG E+F ++   Y +   G +LVY + ++ SF +I+  MR+  
Sbjct: 42  KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQI 100
Query: 113 IDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172
           I     + V  ILVGNK D++  +    +++G+ LA+E+G  F ETSAK+   V+++F  
Sbjct: 101 IRVKRYEKVPVILVGNKVDLESEREVS-SSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159
Query: 173 IAREI 177
           I R++
Sbjct: 160 IVRQM 164

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + + L      L + DTAGQ+ +  +  ++  G  G +LVY VT   SF  I +  + + 
Sbjct: 63  KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 115 Q-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173
           + H    V  +LVGNKAD+   +R V   +G++LA+ +G  F E+SA+ N   + +F  +
Sbjct: 123 EGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
Query: 174 AREI 177
            +EI
Sbjct: 182 IQEI 185

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            K  +   K           G  +A E G +K+ E SA T   ++ VF    R +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            K  +   K           G  +A E G +K+ E SA T   ++ VF    R +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            K  +   K           G  +A E G +K+ E SA T   ++ VF    R +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 140
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            K  +   K           G  +A E G +K+ E SA T   ++ VF    R +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 125
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            K  +   K           G  +A E G +K+ E SA T   ++ VF    R +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 131
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 128
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            K  +   K           G  +A E G +K+ E SA T   ++ VF    R +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK-RIKLQIWDTAGQ 74
           +K++++GD   GK+ L                      +R I L G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---MRNIDQHAADNVNKILVGNKAD 131
                +   Y  GA G+LLVYD+T+  SF N+ +W   ++ + + +       LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           + E  R +   K      E G      SAKT  +V   F  +A EI
Sbjct: 127 L-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 124
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   ILVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 ESKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
           + K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   ILVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 ESKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
           + K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   ILVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 ESKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
           + K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SKRAVPTAK-----------GQELADEYG-IKFFETSAKTNFNVEQVF 170
            K  +   K           G  +A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 121
Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                    D+    +   +G  +A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                    D+    +   +G  +A E G +K+ E SA T   ++ VF
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+LL+G  GVGKS L                       R+I +DG+   L ++D   Q+ 
Sbjct: 9   KVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKILVGNKADMD 133
            R +           ++VY VTD+ SF   + +R  +R   Q   D+V  ILVGNK+D+ 
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLV 124
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            S R V   +G+  A  +  KF ETSA  + NV+ +F  + R+I+ R
Sbjct: 125 RS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                    D+    +   +G  +A E G +K+ E SA T   ++ VF
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+LL+G  GVGKS L                       R+I +DG+   L ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKILVGNKADMD 133
            R +           ++VY VTD+ SF   + +R  +R   Q   D+V  ILVGNK+D+ 
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLV 119
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            S R V   +G+  A  +  KF ETSA  + NV+ +F  + R+I+ R
Sbjct: 120 RS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+LL+G  GVGKS L                       R+I +DG+   L ++D   Q+ 
Sbjct: 9   KVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKILVGNKADMD 133
            R +           ++VY VTD+ SF   + +R  +R   Q   D+V  ILVGNK+D+ 
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLV 124
Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
            S R V   +G+  A  +  KF ETSA  + NV+ +F  + R+I+ R
Sbjct: 125 RS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           ++K +++GD  VGK+CLL+                    + ++ + GK+  L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM- 132
           E +  +    Y      L+ + V + +SF N++  W+  + ++A  NV  +L+G + D+ 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 133 ----------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                     D  ++ +   +GQ+LA E G   + E SA T   ++ VF
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K +L+GD  VGK+ L++                       + +DG+ ++LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQD 79
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDE 134
            F  +    Y      LL + V   SSF N+   W+  I  H       ILVG ++D+ E
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRE 138
Query: 135 -----------SKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVF 170
                       ++ VP    + LA+E     + E SA T  N+++VF
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 34/194 (17%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 76  RFRTITTAYYRGAMG-------------------ILLVYDVTDESSFNNIR-NWMRNIDQ 115
            +  +    Y   +G                    L+ + +   +SF N+R  W   +  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 116 HAADNVNKILVGNKADMDESKRAVPTAK-----------GQELADEYG-IKFFETSAKTN 163
           H   N   ILVG K D+ + K  +   K           G  +A E G +K+ E SA T 
Sbjct: 125 HCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 164 FNVEQVFFSIAREI 177
             ++ VF    R +
Sbjct: 184 RGLKTVFDEAIRAV 197

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 121
Query: 135 SKRAVPTAK-----------GQELADEY-GIKFFETSAKTNFNVEQVF 170
            K  +   K           G  LA E   +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           DY  ++ + G  GVGKS L+LR                  + + I  D     LQI DT 
Sbjct: 3   DY--RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTT 59
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKA 130
           G  +F  +           +LVY +T   S   ++     I +   D  ++  +LVGNK 
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119
Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLV 182
           D   S R V +++ + LA  +   F ETSAK N NV+++F  +    K+R V
Sbjct: 120 DESPS-REVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 170

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   ILVG K D+ +
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 127
Query: 135 SKRAVPTAK-----------GQELADEY-GIKFFETSAKTNFNVEQVF 170
            K  +   K           G  LA E   +K+ E SA T   ++ VF
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++++GD  VGK+CLLL                       ++   +   L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-D 133
            +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    +LVG K D+  
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRK 141
Query: 134 ESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           +    V   +G +L  + G + + E S+     + +VF
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   ILVG K D+ +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 128
Query: 135 SKRAVPTAK-----------GQELADEY-GIKFFETSAKTNFNVEQVF 170
            K  +   K           G  LA E   +K+ E SA T   ++ VF
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++++GD  VGK+CLLL                       ++   +   L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-D 133
            +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    +LVG K D+  
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRK 140
Query: 134 ESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
           +    V   +G +L  + G + + E S+     + +VF
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID 114
           + I  D     LQI DT G  +F  +           +LV+ VT + S   +    + I 
Sbjct: 47  QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 115 Q--HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
           Q   + +++  +LVGNK D  E++R V T + Q +A E+   F ETSAK N+NV+++F
Sbjct: 107 QIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L +++L+GD GVGK+ L                     + RT+ +DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE-RTLTVDGEDTTLVVVDTWEA 62
Query: 75  ERFRTITT--AYYRGAMGILLVYDVTDESSFNN---IRNWMRNIDQHAADNVNKILVGNK 129
           E+     +  +  +G    ++VY + D  SF +   +R  +R    H AD+V  ILVGNK
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT--HQADHVPIILVGNK 120
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
           AD+    R V   +G+  A  +  KF ETSA    NV ++F
Sbjct: 121 ADLARC-REVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKILVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q   +++  ILVGNK
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +D+    R V  ++G+  A  +  KF ETSA    NV+++F  I R+++ R
Sbjct: 124 SDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKILVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q   +++  ILVGNK
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 154
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +D+    R V  ++G+  A  +  KF ETSA    NV+++F  I R+++ R
Sbjct: 155 SDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKILVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q   +++  ILVGNK
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +D+    R V  ++G+  A  +  KF ETSA    NV+++F  I R+++ R
Sbjct: 124 SDL-VRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 123
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 22/176 (12%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERF-----RTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADNVNKI 124
           G+  +       +  AY       L+VY +TD +SF   + +R  +R   Q   +++  I
Sbjct: 68  GENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQ--TEDIPII 118
Query: 125 LVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           LVGNK+D+    R V  ++G+  A  +  KF ETSA    NV+++F  I R+++ R
Sbjct: 119 LVGNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 124
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 124
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 122
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 131
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDES 135
           +      Y     G +LVY VT   SF  I+    + +D      +  +LVGNK D+   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HM 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176
           +R +   +G+ LA+ +   F E+SAK N     VF  I  E
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 123
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDES 135
           +      Y     G +LVY VT   SF  I+    + +D      +  +LVGNK D+   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HM 125
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176
           +R +   +G+ LA+ +   F E+SAK N     VF  I  E
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDES 135
           +      Y     G +LVY VT   SF  I+    + +D      +  +LVGNK D+   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HM 123
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176
           +R +   +G+ LA+ +   F E+SAK N     VF  I  E
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDES 135
           +      Y     G +LVY VT   SF  I+    + +D      +  +LVGNK D+   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HM 120
Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176
           +R +   +G+ LA+ +   F E+SAK N     VF  I  E
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW 69
           D + K++L+G+SGVGKS L                       R I +D + + L    IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 70  ---DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKIL 125
              D  G  R   + T         L+V+ VTD  SF+ +    +R        ++  IL
Sbjct: 81  EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 126 VGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VGNK+D+  S R V   +G+ LA     K  ETSA  + N  ++F    R+I+ R
Sbjct: 136 VGNKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
                     ++ K   P    +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 13  DYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW 69
           D + K++L+G+SGVGKS L                       R I +D + + L    IW
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 70  ---DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKIL 125
              D  G  +   + T         L+V+ VTD  SF+ +    +R        ++  IL
Sbjct: 70  EQGDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 124
Query: 126 VGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VGNK+D+  S R V   +G+ LA     K  ETSA  + N  ++F    R+I+ R
Sbjct: 125 VGNKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW-- 69
           + K++L+G+SGVGKS L                       R I +D + + L    IW  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 70  -DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVG 127
            D  G  +   + T         L+V+ VTD  SF+ +    +R        ++  ILVG
Sbjct: 62  GDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 128 NKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           NK+D+  S R V   +G+ LA     K  ETSA  + N  ++F    R+I+ R
Sbjct: 117 NKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I Q    N   +LVG K+D+   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGCKSDLRTD 147
Query: 134 -------ESKRAVPTA--KGQELADEYG-IKFFETSAKTNFNVEQVFFSIA 174
                   + R  P +  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I Q    N   +LVG K+D+   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGCKSDLRTD 142
Query: 134 -------ESKRAVPTA--KGQELADEYG-IKFFETSAKTNFNVEQVFFSIA 174
                   + R  P +  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR----TIELDGKRIKLQIWDTA 72
           K+ ++G++ VGKS L+                    ++     TI      ++L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN---VNKILVGNK 129
           G + ++   + Y+ G    +LV+DV+   SF + + W   +     D    +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNVEQVFFSIA 174
            D+   +  V     Q+ A    + FF+ SA     + +  F SIA
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I Q    N   +LVG K+D+   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGCKSDLRTD 126
Query: 134 -------ESKRAVPTA--KGQELADEYG-IKFFETSAKTNFNVEQVFFSIA 174
                   + R  P +  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA 118
           +D + + L++ DTA  +  R     Y   A   L+VY V    SF++  +++  +  HA 
Sbjct: 64  VDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122
Query: 119 D---NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQVFFSIA 174
           +   ++  +L+GNK DM +  R V  A+G  LA  +G  FFE SA  +F +V+ VF    
Sbjct: 123 ETQRSIPALLLGNKLDMAQY-RQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
Query: 175 REIKQ 179
           RE ++
Sbjct: 182 REARR 186

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  M R +++    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 135 SKRA 138
           +  A
Sbjct: 133 AMSA 136

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 55
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  M R +++    N   ++  NK D+ E
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 135 SKRA 138
           +  A
Sbjct: 116 AMSA 119

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  M R +++    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
Query: 135 SKRA 138
           +  A
Sbjct: 133 AMSA 136

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN-IDQHAADNVN 122
           + ++IWD  GQ RFR++   Y RG   I+ + D  D       RN + N +D+     + 
Sbjct: 67  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 123 KILVGNKADM 132
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 24/187 (12%)
Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG 61
           A  P  AR       KL+L+GD   GK+  +L+                      +E + 
Sbjct: 4   APQPVVARC------KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEE 56
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADN 120
           +R++L +WDT+G   +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +
Sbjct: 57  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S 115
Query: 121 VNKILVGNKADM-----------DESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQ 168
              +L+G K D+            + +  +   +G  +A + G + + E SA   F  E+
Sbjct: 116 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA---FTSEK 172
Query: 169 VFFSIAR 175
              SI R
Sbjct: 173 SIHSIFR 179

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 24/187 (12%)
Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG 61
           A  P  AR       KL+L+GD   GK+  +L+                      +E + 
Sbjct: 3   APQPVVARC------KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEE 55
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADN 120
           +R++L +WDT+G   +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +
Sbjct: 56  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S 114
Query: 121 VNKILVGNKADM-----------DESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQ 168
              +L+G K D+            + +  +   +G  +A + G + + E SA   F  E+
Sbjct: 115 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA---FTSEK 171
Query: 169 VFFSIAR 175
              SI R
Sbjct: 172 SIHSIFR 178

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN-IDQHAADNVN 122
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +D+     + 
Sbjct: 67  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 123 KILVGNKADM 132
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 24/187 (12%)
Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDG 61
           A  P  AR       KL+L+GD   GK+  +L+                      +E + 
Sbjct: 20  APQPVVARC------KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEE 72
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADN 120
           +R++L +WDT+G   +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +
Sbjct: 73  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S 131
Query: 121 VNKILVGNKADM-----------DESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQ 168
              +L+G K D+            + +  +   +G  +A + G + + E SA   F  E+
Sbjct: 132 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA---FTSEK 188
Query: 169 VFFSIAR 175
              SI R
Sbjct: 189 SIHSIFR 195

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN-IDQHAADNVN 122
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +D+     + 
Sbjct: 76  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 123 KILVGNKADM 132
            +++GNK D+
Sbjct: 136 VLVLGNKRDL 145

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAAD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  D+   D
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 120 NVNKILVGNKADMDESKR 137
            +  ++  NK D+ ++ +
Sbjct: 424 AI-ILIFANKQDLPDAMK 440

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   ++        I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC-----NISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDE 134
           R R++   YY    G++ V D  D S     R  M R +++    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
Query: 135 SKRA 138
           +  A
Sbjct: 133 AMSA 136

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAAD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  D+   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 120 NVNKILVGNKADMDESKR 137
            +  ++  NK D+ ++ +
Sbjct: 102 AI-ILIFANKQDLPDAXK 118

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAAD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  D+   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 120 NVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153
            +  ++  NK D+ ++       K  E+ ++ G+
Sbjct: 102 AI-ILIFANKQDLPDA------MKPHEIQEKLGL 128

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAAD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  D+   D
Sbjct: 54  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 120 NVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153
            +  ++  NK D+ ++       K  E+ ++ G+
Sbjct: 114 AI-ILIFANKQDLPDA------MKPHEIQEKLGL 140

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAAD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  D+   D
Sbjct: 55  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 120 NVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153
            +  ++  NK D+ ++       K  E+ ++ G+
Sbjct: 115 AI-ILIFANKQDLPDA------MKPHEIQEKLGL 141

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI--DQHAAD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  D+   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 120 NVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153
            +  ++  NK D+ ++       K  E+ ++ G+
Sbjct: 102 AI-ILIFANKQDLPDA------MKPHEIQEKLGL 128

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +                   + T+E   K I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 220
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
           + R +   Y++   G++ V D  D    N  R   MR + +    +   ++  NK D+  
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 135 SKRAVPTAKGQELADEYGI 153
           +  A       E+ D+ G+
Sbjct: 281 AMNAA------EITDKLGL 293

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKR---IKLQIWDT 71
           KL ++G++G GK+ LL +                   ++   I++  KR   + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           AG+E F +    +       L VYD++  ++  +  + W+ NI   A+ +   ILVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 131 DM-DESKRAVPTAK-GQELADEYGI 153
           D+ DE +R    +K  +EL ++ G 
Sbjct: 121 DVSDEKQRKACXSKITKELLNKRGF 145

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKR---IKLQIWDT 71
           KL ++G++G GK+ LL +                   ++   I++  KR   + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           AG+E F +    +       L VYD++  ++  +  + W+ NI   A+ +   ILVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 131 DM-DESKRAVPTAK-GQELADEYGI 153
           D+ DE +R    +K  +EL ++ G 
Sbjct: 123 DVSDEKQRKACXSKITKELLNKRGF 147

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +                   + T+E   K I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 71
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
           + R +   Y++   G++ V D  D    N  R   MR + +    +   ++  NK D+  
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 135 SKRAVPTAKGQELADEYGIK 154
           +  A       E+ D+ G+ 
Sbjct: 132 AMNAA------EITDKLGLH 145

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +                   + T+E   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 55
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
           + R +   Y++   G++ V D  D    N  R   MR + +    +   ++  NK D+  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 135 SKRAVPTAKGQELADEYGIK 154
           +  A       E+ D+ G+ 
Sbjct: 116 AMNAA------EITDKLGLH 129

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +                   + T+E   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134
           + R +   Y++   G++ V D  D    N  R   MR + +    +   ++  NK D+  
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 135 SKRAVPTAKGQELADEYGIK 154
           +  A       E+ D+ G+ 
Sbjct: 133 AMNAA------EITDKLGLH 146

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ ++G+   GKS L+ R                  K   I +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKK--EIVVDGQSYLLLIRDEGGPP 78
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-MRNIDQHAADNVNKILVGNKADMDE 134
             +     +      ++ V+ + DE SF  + N+ +R      A  V  +LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 135 SK-RAVPTAKGQELA-DEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           +  R +  ++ ++L+ D     ++ET A    NVE+VF  +A+++
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +                   + T+E   + I   +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGF---NVETVEF--RNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDE 134
           + R +   YY    G++ V D  D    ++ R  + R I++    +   ++  NK D+  
Sbjct: 73  KIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN 132
Query: 135 SKRAVPTAKGQEL 147
           +  A    +   L
Sbjct: 133 AMSAAEVTEKLHL 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-125
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-124
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-122
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-122
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-121
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-121
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-121
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-121
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-121
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-120
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-120
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-120
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-120
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-119
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-119
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-119
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-118
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-118
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-118
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-117
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-117
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-116
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-116
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-115
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-115
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-115
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-115
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-114
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-114
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-114
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-110
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-110
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-109
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-108
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-108
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-108
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-108
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-107
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-107
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-106
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-104
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-102
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-99
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-99
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	5e-91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	8e-91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-91
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-90
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-90
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-90
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-90
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-89
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	7e-88
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-86
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-83
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-81
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-80
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-80
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-73
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-63
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-56
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-55
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-54
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-52
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	6e-51
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-50
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	8e-49
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-48
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-47
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-47
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-46
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-45
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-29
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-24
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-17
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-17
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-17
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-17
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	7e-17
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	9e-17
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	9e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-16
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-16
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-16
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-15
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-14
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-12
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-11
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-09
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	1e-06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	1e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	5e-05
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	8e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	9e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	7e-04
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	8e-04

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  350 bits (899), Expect = e-125
 Identities = 98/203 (48%), Positives = 138/203 (67%), Gaps = 1/203 (0%)

Query: 8   ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQ 67
               +DY+ K+L+IG+S VGK+  L R++DDSFT +F++T+GIDFK++TI  + KRIKLQ
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 68  IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVG 127
           IWDTAG ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I  ++ DN   +LVG
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

Query: 128 NKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSK 187
           NK DM E +R V + +G++LAD  G +FFE SAK N NV+Q F  +   I +++ ES   
Sbjct: 121 NKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 188 AEPQTIRISKPDPANGSAAAPEK 210
           A+P      +        A P +
Sbjct: 180 ADPAVTGAKQGPQLTDQQAPPHQ 202

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  349 bits (898), Expect = e-124
 Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 1/204 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIG+SGVGKSCLLLRFSDD++T  +I+TIG+DFKI+T+ELDGK +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ ID++A   V K+LVGNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           D+ + KR V     +E AD   + F ETSA  + NVE  F ++AR+IK+ + + +     
Sbjct: 124 DL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182

Query: 191 QTIRISKPDPANGSAAAPEKSACC 214
           Q           G +       CC
Sbjct: 183 QKKEDKGNVNLKGQSLTNTGGCCC 206

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  342 bits (880), Expect = e-122
 Identities = 95/180 (52%), Positives = 128/180 (71%), Gaps = 1/180 (0%)

Query: 4   APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR 63
           +        DY+ KLLLIG+S VGK+  L R++DDSFT +F++T+GIDFK++T+    KR
Sbjct: 11  SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK 123
           IKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I  ++ DN   
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQV 130

Query: 124 ILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
           ILVGNK D+ E +R VP   G+ LAD+ G +FFE SAK N NV+QVF  +   I +++ E
Sbjct: 131 ILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  341 bits (878), Expect = e-122
 Identities = 120/180 (66%), Positives = 151/180 (83%), Gaps = 1/180 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YDYL KLLLIGDSGVGK+C+L RFS+D+F ++FI+TIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW+RNI++HA+ +V K+++GNK 
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           D+   KR V   +G++LA +YGIKF ETSAK N NVE  FF++AR+IK ++ ++      
Sbjct: 124 DV-NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAA 182

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  341 bits (877), Expect = e-121
 Identities = 95/178 (53%), Positives = 131/178 (73%), Gaps = 1/178 (0%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKL 66
             + ++DY+ KLL+IG+S VGK+  L R++DD+FT +F++T+GIDFK++T+    KR+KL
Sbjct: 15  YFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKL 74

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV 126
           QIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I  ++ DN   ILV
Sbjct: 75  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV 134

Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
           GNK DM E +R VPT KGQ LA++ G  FFE SAK N +V Q F  +   I  ++ +S
Sbjct: 135 GNKCDM-EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  340 bits (875), Expect = e-121
 Identities = 97/179 (54%), Positives = 135/179 (75%), Gaps = 2/179 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L KLL+IGDSGVGKS LLLRF+D++F+ S+ITTIG+DFKIRT+E++G+++KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I+Q+  D+V +ILVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKN 123

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE 189
           D    ++ V T    + A + GI+ FETSAK N NVE++F  I   + +   ++ +K +
Sbjct: 124 DD-PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  340 bits (875), Expect = e-121
 Identities = 79/183 (43%), Positives = 123/183 (67%), Gaps = 1/183 (0%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
              P  +  DYD+L K++LIG++GVGK+CL+ RF+   F      TIG+DF I+T+E++G
Sbjct: 13  GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING 72

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           +++KLQIWDTAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R I+Q+A++ V
Sbjct: 73  EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 132

Query: 122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
             +LVGNK D+   +R V   + +E ++   + + ETSAK + NVE++F  +A  +    
Sbjct: 133 ITVLVGNKIDL-AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191

Query: 182 VES 184
            ++
Sbjct: 192 RQN 194

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  340 bits (875), Expect = e-121
 Identities = 106/206 (51%), Positives = 148/206 (71%), Gaps = 6/206 (2%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
             +A +     YD ++K+LLIGDSGVGKSCLL+RF +D F  SFITTIGIDFKI+T++++
Sbjct: 6   TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN 65

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + +++HA D 
Sbjct: 66  GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
              +LVGNK+DM+   R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I+++
Sbjct: 126 AQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 181 L----VESDSKAEPQTIRISKPDPAN 202
           +    +      +   I I+     +
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGSGNS 209

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  339 bits (873), Expect = e-121
 Identities = 117/196 (59%), Positives = 150/196 (76%), Gaps = 3/196 (1%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
              + +    +YDYL KLLLIGDSGVGKSCLLLRF+DD++T S+I+TIG+DFKIRTIELD
Sbjct: 2   PLGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 61

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++N
Sbjct: 62  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 121

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           VNK+LVGNK D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R
Sbjct: 122 VNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

Query: 181 LVES--DSKAEPQTIR 194
           +        AE   ++
Sbjct: 181 MGPGATAGGAEKSNVK 196

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  339 bits (871), Expect = e-120
 Identities = 80/179 (44%), Positives = 131/179 (73%), Gaps = 2/179 (1%)

Query: 4   APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR 63
            P  +    D+ +++++IG  GVGK+ L+ RF+DD+F  +  +T+G+DFKI+T+EL GK+
Sbjct: 15  VPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 74

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK 123
           I+LQIWDTAGQERF +IT+AYYR A GI+LVYD+T + +F+++  WM+ ID++A+++   
Sbjct: 75  IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL 134

Query: 124 ILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +LVGNK D  E+ R +   +G++ A +  G++F E SAK NFNV+++F  +  +I +++
Sbjct: 135 LLVGNKLDC-ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  337 bits (867), Expect = e-120
 Identities = 88/175 (50%), Positives = 132/175 (75%), Gaps = 2/175 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIW 69
            YD   K++L+GDSGVGK+CLL+RF D +F   +FI+T+GIDF+ + +++DG ++KLQ+W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
            D    +R V    G++LA EYG+ F ETSAKT  NV+  F +IA+E+K+R +++
Sbjct: 126 VDS-AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  338 bits (868), Expect = e-120
 Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 5/175 (2%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
                 K++L GD+ VGKS  L+R   + F  +   T+G+DF+++T+ +DG+R  LQ+WD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFR+I  +Y+R A G+LL+YDVT E SF NIR W+  I+  A + V  +LVGNKA
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143

Query: 131 DMD-----ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           D+      E ++ VP   G++LA  YG  F ETSAK   N+ +    +ARE+K+R
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  337 bits (867), Expect = e-120
 Identities = 115/171 (67%), Positives = 144/171 (84%), Gaps = 1/171 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIGDSGVGKSCLLLRF+DD++T S+I+TIG+DFKIRTIELDGK IKLQIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ ID++A++NVNK+LVGNK 
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+  +K+ V     +E AD  GI F ETSAK   NVEQ F ++A EIK+R+
Sbjct: 149 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  336 bits (865), Expect = e-119
 Identities = 76/176 (43%), Positives = 115/176 (65%), Gaps = 1/176 (0%)

Query: 6   ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIK 65
            R   DY+++ K++LIG+SGVGK+ LL RF+ + F+    TTIG++F  RT+ L    +K
Sbjct: 16  PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 75

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKIL 125
            QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +L
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135

Query: 126 VGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           VGNK+D+    R VPT + +  A+  G+ F ETSA  + NVE  F ++ +EI  ++
Sbjct: 136 VGNKSDL-SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  336 bits (864), Expect = e-119
 Identities = 82/181 (45%), Positives = 122/181 (67%), Gaps = 2/181 (1%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           +          YD+L KL+L+GD+ VGK+C++ RF   +F+    +TIG+DF ++T+E+ 
Sbjct: 15  VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ 74

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GKR+KLQIWDTAGQERFRTIT +YYR A G +L YD+T  SSF ++ +W+ ++ ++A  N
Sbjct: 75  GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVEQVFFSIAREIKQ 179
           + ++L+GNK+D+    R V  A+ Q LA+ Y I    ETSAK + NVE+ F  +A E+  
Sbjct: 135 IVQLLIGNKSDL-SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

Query: 180 R 180
           R
Sbjct: 194 R 194

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  334 bits (860), Expect = e-119
 Identities = 87/171 (50%), Positives = 124/171 (72%), Gaps = 1/171 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
              YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWD
Sbjct: 17  RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH++ N+  +L+GNK+
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 136

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+ ES+R V   +G+  A E+G+ F ETSAKT  NVE+ F + A+EI +++
Sbjct: 137 DL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  334 bits (859), Expect = e-118
 Identities = 86/194 (44%), Positives = 128/194 (65%), Gaps = 12/194 (6%)

Query: 6   ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD----- 60
           + +  DYDYLIK L +GDSGVGK+ +L +++D  F + FITT+GIDF+ + +        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 61  -----GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ 115
                G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNW+  +  
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121

Query: 116 HAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174
           HA  +N + +L GNK+D+ E +RAV   + +ELA++YGI +FETSA    N+      + 
Sbjct: 122 HAYSENPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 175 REIKQRLVESDSKA 188
             I +R+  S  K+
Sbjct: 181 DLIMKRMERSVDKS 194

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  333 bits (856), Expect = e-118
 Identities = 102/172 (59%), Positives = 139/172 (80%), Gaps = 2/172 (1%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D ++K+LLIGDSGVGKSCLL+RF +D F  SFITTIGIDFKI+T++++GK++KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132
           GQERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + +++HA D    +LVGNK+DM
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
           +   R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I++++  +
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  332 bits (853), Expect = e-118
 Identities = 81/195 (41%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
           ++  +    D    +K+L+IG+SGVGKS LLLRF+DD+F      TIG+DFK++TI +DG
Sbjct: 2   SSGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG 61

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN- 120
            + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F  + NW+  ++ +   N 
Sbjct: 62  NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +  +LVGNK D +   R V   +G + A ++ + F E SAKT   V+  F  +  +I Q 
Sbjct: 122 IVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179

Query: 181 LVESDSKAEPQTIRI 195
               +S+ +      
Sbjct: 180 PGLWESENQNSGPSS 194

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  331 bits (851), Expect = e-117
 Identities = 90/204 (44%), Positives = 134/204 (65%), Gaps = 13/204 (6%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
           +    R   DYDYLIKLL +GDSGVGK+  L R++D+ F   FITT+GIDF+ + +  + 
Sbjct: 12  SGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNA 71

Query: 62  K----------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMR 111
           +          ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNWM 
Sbjct: 72  QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 131

Query: 112 NIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170
            +  +A  +N + +L+GNKAD+   +R V   + +ELAD+YGI +FETSA T  NVE+  
Sbjct: 132 QLQANAYCENPDIVLIGNKADL-PDQREVNERQARELADKYGIPYFETSAATGQNVEKAV 190

Query: 171 FSIAREIKQRLVESDSKAE-PQTI 193
            ++   I +R+ +   K + P T+
Sbjct: 191 ETLLDLIMKRMEQCVEKTQIPDTV 214

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  330 bits (848), Expect = e-117
 Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 6/178 (3%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKL 66
             R     + K+++IGDS VGK+CL  RF    F      TIG+DF+ R +++DG+RIK+
Sbjct: 12  VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKI 71

Query: 67  QIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN-VNKI 124
           Q+WDTAGQERFR ++   YYR    ++ VYD+T+ +SF+++  W+    QH   N + +I
Sbjct: 72  QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI 131

Query: 125 LVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT---NFNVEQVFFSIAREIKQ 179
           LVGNK D+  S   VPT   Q+ AD + +  FETSAK    N +VE +F ++A ++K 
Sbjct: 132 LVGNKCDL-RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  328 bits (844), Expect = e-116
 Identities = 78/192 (40%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
           +    R     D+L K L+IG +G GKSCLL +F ++ F      TIG++F  R + + G
Sbjct: 12  SGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG 71

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           K +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N++  W+ +    A+ N+
Sbjct: 72  KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131

Query: 122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
             IL GNK D+ + +R V   +    A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 132 VVILCGNKKDL-DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

Query: 182 VESDSKAEPQTI 193
                + +P+ +
Sbjct: 191 --DSGELDPERM 200

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  327 bits (841), Expect = e-116
 Identities = 86/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
             A      +YDYL K++LIGDSGVGKS LL RF+ + F     +TIG++F  R+I++DG
Sbjct: 16  GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           K IK QIWDTAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+
Sbjct: 76  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135

Query: 122 NKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
             +LVGNK+D+    RAVPT + +  A++ G+ F ETSA  + NVE  F +I  EI
Sbjct: 136 VIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  327 bits (841), Expect = e-115
 Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 13/216 (6%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD L K++LIGDSGVGKS LL RF+ + F     +TIG++F  RT+E++GKRIK QIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
           D+    RAVPT + +  A E  + F ETSA  + NV++ F  +   I Q++ +       
Sbjct: 129 DL-AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGD 187

Query: 191 QTIRISKPD------------PANGSAAAPEKSACC 214
            +   +               P          + CC
Sbjct: 188 SSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  325 bits (835), Expect = e-115
 Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 1/193 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL K++LIGDSGVGKS LL RF+ + F     +TIG++F  R+I++DGK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQ 191
           +    RAVPT + +  A++  + F ETSA  + NVE+ F +I  EI + + +        
Sbjct: 122 L-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 180

Query: 192 TIRISKPDPANGS 204
                  +  + S
Sbjct: 181 HDESPGNNVVDIS 193

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  324 bits (833), Expect = e-115
 Identities = 78/171 (45%), Positives = 109/171 (63%), Gaps = 1/171 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YD+L K L+IG++G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    A+ N+  IL GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           D+ ++ R V   +    A E  + F ETSA T  NVE+ F   AR+I  ++
Sbjct: 126 DL-DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  324 bits (832), Expect = e-115
 Identities = 83/176 (47%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 4   APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR 63
             A A  +Y Y+ K ++IGD GVGKSCLL +F++  F      TIG++F  R IE+ G++
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK 123
           IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +       N   
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 123

Query: 124 ILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           IL+GNKAD+ E++R V   + ++ A+E G+ F E SAKT  NVE  F   A++I Q
Sbjct: 124 ILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  323 bits (830), Expect = e-114
 Identities = 59/169 (34%), Positives = 95/169 (56%), Gaps = 2/169 (1%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
            +  IK++++G+  VGKS ++ R+    FT  +  TIG+DF  R I+++ + ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQE F  IT AYYRGA   +LV+  TD  SF  I +W   +      ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKID 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +      +   + + LA    ++F+ TS K + NV +VF  +A +  Q+
Sbjct: 121 L-LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  322 bits (827), Expect = e-114
 Identities = 63/170 (37%), Positives = 103/170 (60%), Gaps = 1/170 (0%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
               Y  K++L+G+  VGK+ L+LR+ ++ F    ITT+G  F  + + + GKR+ L IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
            D+ E +R V   + +  A+  G K + TSAK N  +E++F  + + + +
Sbjct: 121 IDL-EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  322 bits (828), Expect = e-114
 Identities = 71/212 (33%), Positives = 115/212 (54%), Gaps = 7/212 (3%)

Query: 4   APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR 63
           +      +     KL+ +G+  VGK+ L+ RF  DSF  ++  TIGIDF  +T+ L+ + 
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK 123
           ++LQ+WDTAG ERFR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124

Query: 124 ILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
           +LVGNK D+   KR V   +G+  A E  + F ETSAK  +NV+Q+F  +A  +      
Sbjct: 125 MLVGNKTDL-ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 183

Query: 184 SD-SKAEPQTIRISKPDPANGSAAAPEKSACC 214
            D S+ +   I++ KP     S     +  C 
Sbjct: 184 QDRSREDMIDIKLEKPQEQPVS-----EGGCL 210

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  314 bits (807), Expect = e-110
 Identities = 70/209 (33%), Positives = 117/209 (55%), Gaps = 11/209 (5%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
               L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWD
Sbjct: 4   RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILV 126
           TAGQERF+++  A+YRGA   +LV+DVT  ++F  + +W       A     +N   +++
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDS 186
           GNK D+ E+++            +  I +FETSAK   NVEQ F +IAR   ++  E + 
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182

Query: 187 KAE-PQTIRISKPDPANGSAAAPEKSACC 214
             E P+ I++ K + A  S       +C 
Sbjct: 183 YNEFPEPIKLDKNERAKAS-----AESCS 206

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  312 bits (802), Expect = e-110
 Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA A      +     KL+L+GD G GKS L+LRF  D F     +TIG  F  +T+ ++
Sbjct: 3   MAAAG-----NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN 57

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
              +K +IWDTAGQER+ ++   YYRGA   ++V+DVT+++SF   + W++ +      N
Sbjct: 58  DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN 117

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +   L GNK+D+    R V     Q  A E G+ F ETSAKT  NV+++F+ IAR + + 
Sbjct: 118 MVMALAGNKSDL-LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

Query: 181 LVESD 185
               +
Sbjct: 177 QPTEN 181

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  311 bits (799), Expect = e-109
 Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 1/183 (0%)

Query: 3   TAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK 62
           ++    R      +K+ L+GD+GVGKS ++ RF  D F  +   TIG  F  +T+    +
Sbjct: 11  SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE 70

Query: 63  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN 122
             K  IWDTAGQERF ++   YYRG+   ++VYD+T + SF  ++ W++ + +H  +N+ 
Sbjct: 71  LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV 130

Query: 123 KILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLV 182
             + GNK D+    R VP    +E A+  G    ETSAK   N+E++F  I+R+I     
Sbjct: 131 MAIAGNKCDL-SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

Query: 183 ESD 185
             +
Sbjct: 190 HEN 192

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  309 bits (794), Expect = e-108
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIG-IDFKIRTIELDGKRIK 65
            +    +   K+ LIGD GVGK+  + R  D  F  ++  T+G ++  +  ++  G  IK
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKIL 125
             +WDTAGQE+   +   YY GA G +L +DVT   +  N+  W++       +    ++
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 126 VGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR---LV 182
             NK D+ ++++ +      E+      ++FE SAKT  N    F  +AR    R   + 
Sbjct: 123 CANKIDI-KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181

Query: 183 ESDSKAEPQTIRISKPDPANGSAAAPEKSA 212
            S+   EP  +      P         + A
Sbjct: 182 VSNVNLEPTEVNYDYHSPEESKYIDYMEQA 211

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  307 bits (790), Expect = e-108
 Identities = 67/177 (37%), Positives = 108/177 (61%), Gaps = 4/177 (2%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           M++       +     KL+ +G+  VGK+ L+ RF  DSF  ++  TIGIDF  +T+ L+
Sbjct: 3   MSSGDF---GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 59

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
            + ++LQ+WDTAGQERFR++  +Y R +   ++VYD+T+ +SF+    W+ ++      +
Sbjct: 60  DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD 119

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           V  +LVGNK D+   KR V T +G+  A E  + F ETSAK  +NV+Q+F  +A  +
Sbjct: 120 VIIMLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  307 bits (790), Expect = e-108
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 7/176 (3%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           A    L K++L+GD GVGKS L+ R+  + F T    TIG++F  + +E+DG  + +QIW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKIL 125
           DTAGQERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   ++
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 126 VGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +GNK D+ E  R V T + Q    + G   +FETSAK   NV   F    R +   
Sbjct: 122 LGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  307 bits (789), Expect = e-108
 Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 5/172 (2%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK-RIKLQI 68
             +   +K++++GD   GK+ L   F+ ++F   +  TIG+DF +R I L G   + LQI
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ---HAADNVNKIL 125
           WD  GQ     +   Y  GA G+LLVYD+T+  SF N+ +W   + +    +       L
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 126 VGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           VGNK D+ E  R +   K      E G      SAKT  +V   F  +A EI
Sbjct: 121 VGNKIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  305 bits (784), Expect = e-107
 Identities = 73/176 (41%), Positives = 108/176 (61%), Gaps = 6/176 (3%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR-IKLQIW 69
               ++K++++GDSGVGK+ L+ R+ +D ++  +  TIG DF  + + +DG +   +Q+W
Sbjct: 4   RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVW 63

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKIL 125
           DTAGQERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA     +    ++
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123

Query: 126 VGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +GNK D +ESK+ V     QELA   G I  F TSAK   NV+  F  IAR   Q+
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  304 bits (782), Expect = e-107
 Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 1/164 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ RF +DSF  +   TIG  F  +T++   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-TD 125

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
            R V     ++ AD     F ETSAK   N+ ++F  I+R I  
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  302 bits (776), Expect = e-106
 Identities = 72/170 (42%), Positives = 109/170 (64%), Gaps = 1/170 (0%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
            +     KL+L+G+S VGKS L+LRF    F     +TIG  F  +T+ LD   +K +IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQER+ ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           AD+  +KRAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++ +
Sbjct: 121 ADL-ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  297 bits (763), Expect = e-104
 Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 8/179 (4%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
                 K+ ++G++ VGKS L+  F+     F   +  T G++  +  + +    + +++
Sbjct: 16  TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75

Query: 69  W--DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ---HAADNVNK 123
           +  DTAG + ++   + Y+ G    +LV+DV+   SF + + W   +          +  
Sbjct: 76  FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135

Query: 124 ILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNVEQVFFSIAREIKQRL 181
           +LV NK D+   +  V     Q+ A    + FF+ SA     + +  F SIA    +  
Sbjct: 136 VLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  293 bits (752), Expect = e-102
 Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 11/196 (5%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA+A   A+ +     KL+L+GD G GK+  + R     F   ++ T+G++        +
Sbjct: 4   MASA---AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
              IK  +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N
Sbjct: 61  RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CEN 119

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +  +L GNK D+ + K     AK      +  +++++ SAK+N+N E+ F  +AR++   
Sbjct: 120 IPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176

Query: 181 ----LVESDSKAEPQT 192
                V   + A P+ 
Sbjct: 177 PNLEFVAMPALAPPEV 192

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  286 bits (734), Expect = 1e-99
 Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 12/215 (5%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA    + + +   L K++++G  GVGKS L L+F  D F   +  T    ++ + + LD
Sbjct: 1   MAANKPKGQ-NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAAD 119
           G+ +++ I DTAGQE +  I   Y+R   G L V+ +T+  SF    ++   I +    +
Sbjct: 59  GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 118

Query: 120 NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           NV  +LVGNK+D+ E KR V   + +  A+++ + + ETSAKT  NV++VFF + REI+ 
Sbjct: 119 NVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177

Query: 180 RLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214
           R +E   +   +  R S             +  CC
Sbjct: 178 RKMEDSKEKNGKKKRKSLAK--------RIRERCC 204

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  285 bits (731), Expect = 3e-99
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 3/174 (1%)

Query: 9   RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
           +   D + K++L+G+SGVGKS L   F      ++       D   R I +D + + L +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 69  WDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILV 126
           +D   Q      +     +     L+V+ VTD  SF+ +   +  +       ++  ILV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           GNK+D+    R V   +G+ LA     K  ETSA  + N  ++F    R+I+ R
Sbjct: 137 GNKSDL-ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  278 bits (713), Expect = 1e-96
 Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 3/183 (1%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
            +       +   L K++++G  GVGKS L L+F  D F   +  T    ++ + + LDG
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADN 120
           + +++ I DTAGQE +  I   Y+R   G L V+ +T+  SF    ++   I +    +N
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           V  +LVGNK+D+ E KR V   + +  A+++ + + ETSAKT  NV++VFF + REI+ R
Sbjct: 124 VPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

Query: 181 LVE 183
            +E
Sbjct: 183 KME 185

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  274 bits (704), Expect = 1e-95
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 3/168 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K++L+G+SGVGKS L   F       +       D   R I +D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADM 132
                 +     +     L+V+ VTD  SF+ +   +  +       ++  ILVGNK+D+
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
               R V   +G+ LA     K  ETSA  + N  ++F    R+I+ R
Sbjct: 122 -ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  274 bits (704), Expect = 3e-95
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 3/175 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
                 KL+++G  GVGKS L ++F    F + +  TI  D   +   +DG   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNK 129
           TAGQE F  +   Y R   G LLV+ + D  SFN +      I +    D+   +LVGNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
           AD+ ES+R VP ++       + + +FE SAK   NV++ F  + R +++   + 
Sbjct: 124 ADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  272 bits (698), Expect = 3e-94
 Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 4/181 (2%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
           + A +   ++     KL+++GD GVGKS L ++F    F   +  TI  D  ++  E+D 
Sbjct: 5   SMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDN 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADN 120
           +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I +    ++
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN-FNVEQVFFSIAREIKQ 179
              ILV NK D+    R V   +G+E+A +Y I + ETSAK    NV++ F  + R I+Q
Sbjct: 124 FPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

Query: 180 R 180
           +
Sbjct: 183 Q 183

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  269 bits (691), Expect = 4e-93
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 14/207 (6%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
            +     ++++ G  GVGKS L+LRF   +F  ++I TI   ++ + I  D     LQI 
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQIT 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ--HAADNVNKILVG 127
           DT G  +F  +           +LV+ VT + S   +    + I Q   + +++  +LVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

Query: 128 NKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSK 187
           NK D  +  R V T + Q +A E+   F ETSAK N+NV+++F  +     +R +  +  
Sbjct: 122 NKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNID 179

Query: 188 AEPQTIRISKPDPANGSAAAPEKSACC 214
            +    +               K  C 
Sbjct: 180 GKRSGKQKRTD---------RVKGKCT 197

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  267 bits (686), Expect = 1e-92
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+F  D F   +  T    ++ + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +    +NV  +LVGNK+D+ 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 121

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           E KR V   + +  AD++ + + ETSAKT  NV++VFF + REI+ R
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  265 bits (681), Expect = 1e-91
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
                K+ ++G   VGKS L ++F +  F  S+  TI   F  + I ++G+   LQ+ DT
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKA 130
           AGQ+ +      Y     G +LVY VT   SF  I+     + D      +  +LVGNK 
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           D+   +R +   +G+ LA+ +   F E+SAK N     VF  I  E ++ 
Sbjct: 122 DL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  264 bits (678), Expect = 5e-91
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 3/170 (1%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
                K++++G   VGK+ L  +F +  F+  +  T+   +  + + L      L + DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDT 79

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKA 130
           AGQ+ +  +  ++  G  G +LVY VT   SF  I +  + + + H    V  +LVGNKA
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           D+   +R V   +G++LA+ +G  F E+SA+ N   + +F  + +EI + 
Sbjct: 140 DL-SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  264 bits (676), Expect = 8e-91
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 41/209 (19%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIK----- 65
           +     K +L+G+S VGKS ++LR + D+F  +  TTIG  F    + L+   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 66  --------------------------------LQIWDTAGQERFRTITTAYYRGAMGILL 93
                                             IWDTAGQER+ +I   YYRGA   ++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 94  VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153
           V+D+++ ++ +  + W+  +   +  N   ILV NK D +  K  V   + Q+ A +  +
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDKN--KFQVDILEVQKYAQDNNL 178

Query: 154 KFFETSAKTNFNVEQVFFSIAREIKQRLV 182
            F +TSAKT  N++ +F+ +A EI + ++
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKNII 207

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  262 bits (673), Expect = 9e-91
 Identities = 61/163 (37%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F   +F   +  TI  DF  + IE+D     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F ++   Y +   G +LVY + ++ SF +I+     I +    + V  ILVGNK D+ ES
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL-ES 122

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +R V +++G+ LA+E+G  F ETSAK+   V+++F  I R++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  263 bits (674), Expect = 1e-90
 Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 4/171 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++   + F   +  TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 81

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I +   +D+V  +LVGNK D+   
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT- 140

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDS 186
            R V T +  ELA  YGI F ETSAKT   VE  F+++ REI+Q  ++  +
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  262 bits (671), Expect = 2e-90
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++   + F      TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I +   +D+V  +LVGNK+D+   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA- 122

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
            R V + + Q+LA  YGI + ETSAKT   VE  F+++ REI+Q
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  260 bits (668), Expect = 5e-90
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 4/166 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++ + G  GVGKS L+LRF   +F  S+I T+   ++ + I  D     LQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDE 134
           F  +           +LVY +T   S   ++     I +     +++  +LVGNK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE-S 122

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             R V +++ + LA  +   F ETSAK N NV+++F  +    K+R
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  260 bits (666), Expect = 8e-90
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 4/167 (2%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LL+G  GVGKS L   F             G  +  R+I +DG+   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMD 133
           +  R +           ++VY VTD+ SF         + +    D+V  ILVGNK+D+ 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL- 118

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
              R V   +G+  A  +  KF ETSA  + NV+ +F  + R+I+ R
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  260 bits (668), Expect = 1e-89
 Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 19/199 (9%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++   + F   +  TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I +   +++V  +LVGNK D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRI 195
            R V T + Q+LA  YGI F ETSAKT   V+  F+++ REI++                
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH--------------- 167

Query: 196 SKPDPANGSAAAPEKSACC 214
            +    +G     +    C
Sbjct: 168 KEKMSKDGKKKKKKSKTKC 186

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  257 bits (659), Expect = 2e-88
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L +++L+GD GVGK+ L   F+              D   RT+ +DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 75  ERFRTITT--AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKAD 131
           E+     +  +  +G    ++VY + D  SF +       + + H AD+V  ILVGNKAD
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
           +    R V   +G+  A  +  KF ETSA    NV ++F  + R+++ R  +S
Sbjct: 123 L-ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  255 bits (654), Expect = 7e-88
 Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F   +  TI   ++ + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +    ++V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122

Query: 136 KRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           +R V   +GQ LA ++    F E+SAK+  NV ++F+ + R+I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  255 bits (653), Expect = 3e-87
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIEL 59
           M+T    +    +   +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +
Sbjct: 23  MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 82

Query: 60  DGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ- 115
           DG+    I L +W+  G+  +  +     +     L+VY +TD +SF         + + 
Sbjct: 83  DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA 140

Query: 116 HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
              +++  ILVGNK+D+    R V  ++G+  A  +  KF ETSA    NV+++F  I R
Sbjct: 141 RQTEDIPIILVGNKSDL-VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

Query: 176 EIKQR 180
           +++ R
Sbjct: 200 QVRLR 204

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  252 bits (646), Expect = 1e-86
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LRF  + F  +   TIG  F  + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + A+ ++   LVGNK D   +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             +R V   +G++LA+E G+ FFETSAKT  NV  VF  I  +I  +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  250 bits (641), Expect = 2e-85
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
               +KL + G +GVGKS L++RF    F   +  T+   ++     +D + + ++I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDT 83

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKA 130
           AGQE        + R   G +LVYD+TD  SF  +      +D+     NV  ILVGNKA
Sbjct: 84  AGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQVFFSIAREIKQR 180
           D+ +  R V T +G++LA E    F+E SA T   N+ ++F+ + RE+++R
Sbjct: 143 DL-DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  244 bits (624), Expect = 3e-83
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTT--SFITTIGIDFKIRTIELDGKR---IKLQIWD 70
           +KL+++G++G GK+ LL +      +       T+GID K   I++  KR   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
            AG+E F +    +       L VYD++  ++  + ++ W+ NI    A +   ILVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTH 121

Query: 130 ADMDESK--RAVPTAKGQELADEYGI-----KFFETSAKTNFNVEQVFFSIAREIKQ 179
            D+ + K  +A  +   +EL ++ G        F  + + +  + ++  +I  E   
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  239 bits (612), Expect = 3e-81
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ ++G+   GKS L+ R+   ++        G  FK + I +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQSYLLLIRDEGGPP 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMD- 133
             +     +      ++ V+ + DE SF  + N+   +     A  V  +LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 134 ESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180
            + R +  ++ ++L+ +     ++ET A    NVE+VF  +A+++   
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  238 bits (609), Expect = 1e-80
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
              + L ++G  G GKS L ++F    F + +   +   +      +D + + L++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTA 77

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD---NVNKILVGNK 129
             +  R     Y   A   L+VY V    SF++  +++  +  HA +   ++  +L+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQVFFSIAREIKQ 179
            DM    R V  A+G  LA  +G  FFE SA  +F +V+ VF    RE ++
Sbjct: 137 LDM-AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  236 bits (603), Expect = 7e-80
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 8/188 (4%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKR---IKLQ 67
                +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +DG+    I L 
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLD 62

Query: 68  IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILV 126
           +W+  G+  +  +     +     L+VY +TD +SF         + +    +++  ILV
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120

Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDS 186
           GNK+D+    R V  ++G+  A  +  KF ETSA    NV+++F  I R+++ R    + 
Sbjct: 121 GNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179

Query: 187 KAEPQTIR 194
                  +
Sbjct: 180 NERRLAYQ 187

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  218 bits (558), Expect = 3e-73
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 12/179 (6%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
            ++L ++GD+  GKS L+ RF   S+      T    +K + + +DG+   + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQ---HAADNVNKILVGNKAD 131
              +     +   A  ++ V+ + DE+SF  +      +          +   LVG +  
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 132 MD-ESKRAVPTAKGQEL-ADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKA 188
           +   S R V  A+ + L AD     ++ET A    NV++VF  +A+++     +    A
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  212 bits (540), Expect = 3e-66
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL- 59
                      +   IK+ LIGD   GK+ LL +   ++F      T G++   +     
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 60  -------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN 112
                  + K      WD  GQE        +   +   +L+ D     + +N   W+R+
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRH 143

Query: 113 IDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172
           I+++       I+V NK D +     +   K  E       +F   S K    VE +  S
Sbjct: 144 IEKY-GGKSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKS 201

Query: 173 IAREIKQ 179
           +   +  
Sbjct: 202 LKSAVLH 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  193 bits (493), Expect = 5e-63
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
               A    +    +K++++GD  VGK+CLLL FS     T+++ T+  +F    ++   
Sbjct: 10  MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKN 68

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADN 120
           +   L +WDTAGQE +  +    Y  +  +LL + V + +SF+NI   W   I +H  D 
Sbjct: 69  EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDT 127

Query: 121 VNKILVGNKADM-DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
              +LVG K D+  +    V   +G +L  + G + + E S+     + +VF      I
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  176 bits (448), Expect = 5e-56
 Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD G GK+ LL+ F+D +F  S+  T+   + +  +++ GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDE 134
            +  +   +Y  A  +LL +DVT  +SF+NI N W   +  H    V  I+VG K D+ +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152

Query: 135 SK-----------RAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAR 175
            K             V   +GQE+A   G + + E SA+ + NV  VF   A 
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  174 bits (442), Expect = 1e-55
 Identities = 53/173 (30%), Positives = 95/173 (54%), Gaps = 13/173 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+CLL+ ++ ++F T ++ T+  +F    + ++G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDE 134
            +  +    YRGA   +L + +  ++S+ N+   W+  + +H A  V  +LVG K D+ +
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRD 126

Query: 135 SKRA---------VPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREI 177
            K+          + T +G+EL    G   + E S+K+  NV+ VF +  R +
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  171 bits (434), Expect = 4e-54
 Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 15/182 (8%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKL 66
           R         KL+++GD   GK+CLL+ FS D F   ++ T+  +  I  IE+DGK+++L
Sbjct: 17  RGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVEL 75

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKIL 125
            +WDTAGQE +  +    Y     IL+ + +    S  NI   W   +      NV  IL
Sbjct: 76  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIIL 134

Query: 126 VGNKADM-----------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSI 173
           VGNK D+              +  V + +G+++A+      + E SAKT   V +VF   
Sbjct: 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194

Query: 174 AR 175
            R
Sbjct: 195 TR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  166 bits (422), Expect = 3e-52
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++GD   GK+CLL+ FS D F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y     IL+ + V    S  NI   W+  +      NV  ILV NK D+  
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRS 143

Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAR 175
                       +  V T  G+ +A       + E SAKT   V +VF +  R
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  163 bits (413), Expect = 6e-51
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++ ++F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   + +H   N   ILVG K D+  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148

Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
                    ++    +   +G  +A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  162 bits (411), Expect = 1e-50
 Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+C+L+ ++ + F T +I T+  D     + +DG+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    YRGA   +L + +  ++S+ N+   WM  + +  A NV  +LVG K D+  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTKLDLRD 127

Query: 133 -----DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQRLVESDS 186
                 +    + + +G+EL  + G   + E S+KT  NV+ VF +  + + Q     + 
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187

Query: 187 KAEPQTIRISK 197
               +  R S 
Sbjct: 188 PRRRKNHRRSG 198

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  161 bits (408), Expect = 1e-49
 Identities = 46/223 (20%), Positives = 74/223 (33%), Gaps = 67/223 (30%)

Query: 22  GDSGVGKSCLLLRF---SDDSFTTSFITTIG-IDFKIRTIELD--------------GKR 63
           G  G+GKSCL  RF   S D F     + +   DF  R +  D                 
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 64  IKLQIW-------DTAGQERFRTITTAYYRGAM--------------------------- 89
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 90  ----------GILLVYDVT--DESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESK 136
                     G LL  DV+     +F++   ++ N+    A      ++V  K D    +
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE-GVE 213

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           R +  A    L+ +  ++  ETSA++N NV+  F ++ + I +
Sbjct: 214 RYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLIDK 255

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  156 bits (397), Expect = 8e-49
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++ ++F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123

Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAR 175
                    ++    +   +G  +A E G +K+ E SA T   ++ VF    R
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  156 bits (397), Expect = 2e-48
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 16/174 (9%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           + +   K++++GDS  GK+ LL  F+ D F  +++ T+  ++   + E+D +RI+L +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWD 82

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNK 129
           T+G   +  +    Y  +  +L+ +D++   + +++   W   I +    N   +LVG K
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCK 141

Query: 130 ADM-----------DESKRAVPTAKGQELADEYG-IKFFETSAKTN-FNVEQVF 170
           +D+           +  +  V   +G  +A + G   + E SA  +  +V  +F
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  153 bits (389), Expect = 2e-47
 Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++GDS  GK+ LL  F+ D F  +++ T+  ++   + E+D +RI+L +WDT+G  
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSP 66

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y  +  +L+ +D++   + +++   W   I +    N   +LVG K+D+  
Sbjct: 67  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRT 125

Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTN-FNVEQVF 170
                    +  +  V   +G  +A + G   + E SA  +  +V  +F
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  153 bits (388), Expect = 3e-47
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 13/180 (7%)

Query: 3   TAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK 62
               RA       +K +L+GD  VGK+ L++ ++ + + T +I T   D     + +DG+
Sbjct: 8   GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGR 66

Query: 63  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN 122
            ++LQ+ DTAGQ+ F  +    Y      LL + V   SSF N+        +       
Sbjct: 67  PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP 126

Query: 123 KILVGNKADM-----------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170
            ILVG ++D+              ++ VP    + LA+E     + E SA T  N+++VF
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  151 bits (383), Expect = 2e-46
 Identities = 35/174 (20%), Positives = 81/174 (46%), Gaps = 16/174 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD   GK+ +L   + D +  +++ T+  ++    +E + +R++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADM-- 132
            +  +    Y  +  +LL +D++   + ++    W   I      +   +L+G K D+  
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDLRT 145

Query: 133 ---------DESKRAVPTAKGQELADEYG-IKFFETSAKTN-FNVEQVFFSIAR 175
                     + +  +   +G  +A + G   + E SA T+  ++  +F + + 
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  148 bits (375), Expect = 3e-45
 Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 2   ATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG 61
           A   + A      ++K +++GD  VGK+CLL+ +++D+F   ++ T+  D    ++ + G
Sbjct: 5   AGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGG 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADN 120
           K+  L ++DTAGQE +  +    Y      L+ + V + +SF N++  W+  + +  A N
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPN 122

Query: 121 VNKILVGNKADM-----------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQ 168
           V  +L+G + D+           D  ++ +   +GQ+LA E G   + E SA T   ++ 
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182

Query: 169 VFFSIAR 175
           VF     
Sbjct: 183 VFDEAII 189

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  110 bits (275), Expect = 4e-29
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 15/183 (8%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           +             LIK +++GD  VGK+CLL+ ++ ++F   +I T+  D     + +D
Sbjct: 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVD 199

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAAD 119
           GK + L +WDTAG E +  +    Y      L+ + +   +SF+++R  W   +  H   
Sbjct: 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP- 258

Query: 120 NVNKILVGNKADM-----------DESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVE 167
           N   ILVG K D+           ++    +   +G  +A E G +K+ E SA T   ++
Sbjct: 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

Query: 168 QVF 170
            VF
Sbjct: 319 TVF 321

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 26/186 (13%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSD----------DSFTTSFITTIGIDFKIRTIE-LDGKRI 64
            K++  G    GK+  L                S  T    T+  DF    I  + G + 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW--MRNIDQHAADNVN 122
           +  ++   GQ  +        RG  GI+ V D        N  +   MR         ++
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 123 KI--LVG-NKADMDESKRAVPTAKGQELADEYG----IKFFETSAKTNFNVEQVFFSIAR 175
            +  ++  NK D+     A+P      +             E  A     V +    ++R
Sbjct: 135 DVPIVIQVNKRDL---PDALPVE---MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSR 188

Query: 176 EIKQRL 181
            +  R+
Sbjct: 189 LVLARV 194

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R       T+ I TIG  F + T+    K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
             R     YY     ++ V D  D       ++ +  + +        ++V  NK DM++
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +  +       E+A+  G         + F+TSA     +++    +   +K R
Sbjct: 123 AMTS------SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
           + R +   Y++   G++ V D  D        + ++ + Q        +LV  NK DM  
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +          EL D+ G             T A     +      ++ E+ +R
Sbjct: 145 AMPV------SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 75.0 bits (185), Expect = 5e-17
 Identities = 33/174 (18%), Positives = 73/174 (41%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           I++L++G    GK+ +L R       T+ + T+G    + T++   K I  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQY--KNISFEVWDLGGQT 77

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
             R     Y+     ++ V D TD       ++ +  +        + +L+  NK D+ +
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +          E+A++ G            ++S+KT   + +    +   ++++
Sbjct: 138 AASE------AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 74.6 bits (184), Expect = 5e-17
 Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 20/179 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++LL++G    GK+ +L +F+ +   T    T+G  F I+T+E   +  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEH--RGFKLNIWDVGGQK 73

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
             R+    Y+    G++ V D  D     + +  ++++          +L+  NK D+  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQRLVESD 185
           +           + +            +    SA T  ++      +  +I  R+  +D
Sbjct: 134 ALSC------NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 74.2 bits (183), Expect = 7e-17
 Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 24/177 (13%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS +    +   TIG    +  I +     +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 71

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK--ILV-GNKADM 132
             R+    YY     +++V D TD    +  R  +  +  H  +++ K  +L+  NK D+
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAGLLIFANKQDV 129

Query: 133 DESKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQRL 181
            E           E++                   A T   + Q    +   +K RL
Sbjct: 130 KECMTV------AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 73.4 bits (181), Expect = 9e-17
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
           + R +   Y++   G++ V D  D    N  R  +  +          +LV  NK D+  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +  A       E+ D+ G             T A +   + +    ++ +++ +
Sbjct: 116 AMNA------AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 74.1 bits (183), Expect = 9e-17
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L L+G    GK+  +   +   F    I T+G  F +R I      + +++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITK--GNVTIKLWDIGGQP 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
           RFR++   Y RG   I+ + D  D+      +N + N+          +LV GNK D+  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

Query: 135 SKRAVPTAKGQELADEYGIK--------FFETSAKTNFNVEQVFFSIAREIKQR 180
           +         +EL ++  +          +  S K   N++     + +  K R
Sbjct: 139 ALDE------KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 74.2 bits (182), Expect = 1e-16
 Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 24/168 (14%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
               ++LL+G    GKS +          + T    +T         I      +  QIW
Sbjct: 18  GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISNSSF-VNFQIW 74

Query: 70  DTAGQERFRTIT---TAYYRGAMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKI 124
           D  GQ  F   T      +RG   ++ V D  D+   +   +   +    +   D     
Sbjct: 75  DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD--MNF 132

Query: 125 LV-GNKADM------DESKRAVPTAKGQELADE----YGIKFFETSAK 161
            V  +K D        E++R +      +LAD       + F+ TS  
Sbjct: 133 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIY 180

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R       T+   TIG  F + T+    K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSY--KNLKLNVWDLGGQT 73

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
             R     YY     ++ V D TD+   +     +  + Q        +LV  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +  A       E++ E               +SA     + +    +   IK+ 
Sbjct: 134 ALSA------SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 72.7 bits (179), Expect = 3e-16
 Identities = 28/177 (15%), Positives = 68/177 (38%), Gaps = 22/177 (12%)

Query: 16  IKLLLIGDSGVGKSCLLLRF-SDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + +L +G    GK+ ++ +    ++ + + + TIG  F I   +     +   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQ 77

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK--ILV-GNKAD 131
            R+R +   YY+    I+ V D +D       +  +  +  H      +  IL   NK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137

Query: 132 MDESKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           + ++  +       +++                 + A     +++    +  +I+  
Sbjct: 138 LRDAVTS------VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 71.8 bits (177), Expect = 5e-16
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++LL+G    GK+ LL + + +  +     T G  F I++++   +  KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQS--QGFKLNVWDIGGQR 71

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
           + R    +Y+     ++ V D  D   F      +  + +    +   +L+  NK D+  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +  A       E+A+            +    SA T   V+     + + +  +
Sbjct: 132 AAPA------SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 70.8 bits (173), Expect = 7e-15
 Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 22/179 (12%)

Query: 17  KLLLIGDSGVGKSCLL-LRFSDDSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           KLLL+G SG GKS +  + FS+ S   T     TI ++     +   G  + L +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGN-MTLNLWDCGG 61

Query: 74  QERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILV- 126
           Q+ F            ++    ++ V+DV       +I  + + + Q    + + KI V 
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 127 GNKADM--DESKRAVPTAKGQELADEYG------IKFFETSAKTNFNVEQVFFSIAREI 177
            +K D+   + +  +     + L++         +  F TS     ++ + +  I   +
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL 179

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 20/164 (12%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS +    +   TIG    +  I +     +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 76

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
             R+    YY     +++V D TD    +  R  +  +  H       +L+  NK D+ E
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136

Query: 135 SKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVF 170
                      E++                   A T   + Q  
Sbjct: 137 CMTV------AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 12/145 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G    GK+ LL    DD      + T+        + +    +    +D  G  
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTI--AGMTFTTFDLGGHI 80

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADMDE 134
           + R +   Y     GI+ + D  D       +  + ++          IL+ GNK D   
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR-- 138

Query: 135 SKRAVPTAKGQELADEYGIKFFETS 159
              A+       L + +G+    T 
Sbjct: 139 -PEAISEE---RLREMFGLYGQTTG 159

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
               +++L++G    GK+ +L +       T+ I TIG  F + T+E   K I   +WD 
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDV 216

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKA 130
            GQ++ R +   Y++   G++ V D  D    N  R  +  +          +LV  NK 
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 276

Query: 131 DMDESKRAVPTAKGQELADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQR 180
           D+     A+  A   E+ D+ G             T A +   + +    ++ +++ +
Sbjct: 277 DL---PNAMNAA---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KLL +G    GK+ LL    +D   T    T         + +    IK   +D  G  
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAI--GNIKFTTFDLGGHI 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV-GNKADM 132
           + R +   Y+    GI+ + D  D   F+  R  +  +   A       ++ GNK D 
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 75
            +L +G    GK+ L +R     +  +  T+I         ++ + +   L + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 76  RFR-TITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNI--DQHAADNVNKILV-GNKA 130
             R  +   +   A  ++ V D    +    ++  ++  +  D  A  N   +L+  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 131 DMDESK 136
           D+  +K
Sbjct: 126 DIAMAK 131

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
            +++ G    GK+ LL   + DS   + + +            D     + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 77  FRTITTAYYRGAM----GILLVYD-VTDESSFNNIRNWMRNI---DQHAADNVNKILV-G 127
            R   + Y +       G++ + D   D         ++ +I    + + +N   IL+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 128 NKADMDESK 136
           NK+++  ++
Sbjct: 164 NKSELFTAR 172

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 18  LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +++ G    GK+ LL   + DS   + + +            D     + + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 78  RTITTAYY----RGAMGILLVYD-VTDESSFNNIRNWMRNI---DQHAADNVNKILV-GN 128
           R   + Y     +   G++ + D   D         ++ +I    + + +N   IL+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 129 KADMDESK 136
           K+++  ++
Sbjct: 129 KSELFTAR 136

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 18  LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +LL+G    GKS  + +    +        +               I L + +  GQ  +
Sbjct: 2   VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNY 59

Query: 78  R---TITTAYYRGAMGILLVYDVTD--ESSFNNIRNWMRNIDQHAADNVNKILV-GNKAD 131
                 +   ++    ++ V D  D   ++  N+   +    +        I V  +K D
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS--INIEVLIHKVD 117

Query: 132 M------DESKRAVPTAKGQELAD----EYGIKFFETSA 160
                   +++R +    G+EL +       + F+ TS 
Sbjct: 118 GLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI 156

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 47/207 (22%)

Query: 18  LLLIGDSGVGKSCLLLRFS-------DDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +++ G   VGKS LL   +          FTT  I  +G          +    + QI D
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGI-NVGQ--------FEDGYFRYQIID 220

Query: 71  TAG------QER----FRTITTAYYRGAMGILLVYDVTDESS---------FNNIRNWMR 111
           T G       ER     + I    Y G + I+ ++D ++            F  +    +
Sbjct: 221 TPGLLDRPISERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK 279

Query: 112 NIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171
           ++          ++V NK D+ + +      + ++   E G+   + SA     ++ V  
Sbjct: 280 DLPF--------LVVINKIDVADEENI---KRLEKFVKEKGLNPIKISALKGTGIDLVKE 328

Query: 172 SIAREIKQRLVESDSKAEPQTIRISKP 198
            I + ++    +   +   + +R  + 
Sbjct: 329 EIIKTLRPLAEKVAREKIERELRRYRS 355

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 26/210 (12%), Positives = 51/210 (24%), Gaps = 62/210 (29%)

Query: 18  LLLIGDSGVGKSCL---LLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           +L+ G  G GK+ +   +                  DFKI              W     
Sbjct: 153 VLIDGVLGSGKTWVALDVCL--SYKVQCKM------DFKI-------------FWLNLKN 191

Query: 75  ER-----FRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAA--------D 119
                     +    Y+          +    +   ++I+  +R + +            
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 120 NVN------------KILV--GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165
           NV             KIL+    K   D     +  A    ++ ++              
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTD----FLSAATTTHISLDHHSMTLTPD-----E 302

Query: 166 VEQVFFSIAREIKQRLVESDSKAEPQTIRI 195
           V+ +         Q L        P+ + I
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 43/209 (20%), Positives = 71/209 (33%), Gaps = 36/209 (17%)

Query: 18  LLLIGDSGVGKSCLLLRFS-------DDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++L G   VGKS  +   S         SFTT        +  +   +    +   QI D
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT-------KNLYVGHFDHKLNKY--QIID 82

Query: 71  TAG-----------QERFRTITTAYYRGAMGILLVYDVTDES--SFNNIRNWMRNIDQHA 117
           T G            E       A+  G   IL + D++++   +     N   +I    
Sbjct: 83  TPGLLDRAFENRNTIEMTTITALAHINGV--ILFIIDISEQCGLTIKEQINLFYSIKSVF 140

Query: 118 ADNVNKILVGNKADM--DESKRAVPTAKGQELADEY--GIKFFETSAKTNFNVEQVFFSI 173
           + N + ++  NK D    +S         +++ D     IKF   S  T   VEQ   + 
Sbjct: 141 S-NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199

Query: 174 AREIKQRLVESDSKAEPQTIRISKPDPAN 202
              +K    ES    + Q +     +  N
Sbjct: 200 CELLKNDQAESILLDQEQLLNTKLGETKN 228

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 16  IKLLLIGDSGVGKSCL---LLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           + +L++G  GVGKS     L+   +     S     G+   + +  + G  I   I DT 
Sbjct: 37  MTVLVLGKGGVGKSSTVNSLIG--EQVVRVSPFQAEGLRPVMVSRTMGGFTIN--IIDTP 92

Query: 73  G--------QERFRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWMRNIDQHAADNVNK 123
           G         +    I        + +LL  D  D  +     +  +  I Q     +  
Sbjct: 93  GLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWC 152

Query: 124 --ILVGNKADMDE 134
             +LV   A    
Sbjct: 153 KTLLVLTHAQFSP 165

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 10/175 (5%)

Query: 13  DYLIKLLLIGDSGVGKSCLL--LRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
             ++ + + G++G GKS  +  LR   +    +  T +      R          +  WD
Sbjct: 67  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126

Query: 71  TAG--QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128
             G     F   T               ++      N  +  + I            V  
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRT 183

Query: 129 KADMD---ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           K D D   E+     T   +++  +  +    T  +       +F    + +   
Sbjct: 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHY 238

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 24/148 (16%)

Query: 56  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 105
               D      ++ DTAG        E     R+        A  IL + D+  E   + 
Sbjct: 275 CFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDE 330

Query: 106 IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165
           +         H A     + V NK D      A   A  + +AD  G +    SA     
Sbjct: 331 LTEIRELKAAHPAAKF--LTVANKLDRA----ANADALIRAIADGTGTEVIGISALNGDG 384

Query: 166 VEQVFFSIAREIKQRLVESDSKAEPQTI 193
           ++     + + +   +   D   E   +
Sbjct: 385 IDT----LKQHMGDLVKNLDKLHEASVL 408

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 22/135 (16%)

Query: 16  IKLLLIGDSGVGKSCL---LLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           + +L++G  GVGKS     ++   +   + S   + G    + +    G    L I DT 
Sbjct: 40  LTILVMGKGGVGKSSTVNSIIG--ERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTP 95

Query: 73  G-----------QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121
           G               ++      +    +L V  +      N  +   + I       +
Sbjct: 96  GLIEGGYINDMALNIIKSFLLD--KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 153

Query: 122 NK--ILVGNKADMDE 134
               I+    A    
Sbjct: 154 WNKAIVALTHAQFSP 168

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 23/123 (18%)

Query: 56  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 105
            I +DG  + L I DTAG        ER    R         A  +L + D T   +  +
Sbjct: 46  HIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRVLFMVDGTTTDA-VD 100

Query: 106 IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165
                          +   +V NKAD+        T +   +++  G      SA+T   
Sbjct: 101 PAEIWPEFIARLPAKLPITVVRNKADI--------TGETLGMSEVNGHALIRLSARTGEG 152

Query: 166 VEQ 168
           V+ 
Sbjct: 153 VDV 155

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 18  LLLIGDSGVGKSC----LLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           +L +G++G+GKS     L     +    T     + +      ++    R+KL I  T G
Sbjct: 45  ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 91  ILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNKADM-DESKRAVPTAK-GQEL 147
           ++ + D+ D   S+         + +   +N   +LVGNKAD+  +S +        +  
Sbjct: 73  VVKIVDIFDFNGSWL------PGLHRFVGNN-KVLLVGNKADLIPKSVKHDKVKHWMRYS 125

Query: 148 ADEYGIKF---FETSAKTNFNVEQVFFSIAREIKQRLV 182
           A + G+K    F  SA     + ++  +I      + V
Sbjct: 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDV 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.83
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.76
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.75
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.74
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.67
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.67
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.66
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.63
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.61
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.6
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.53
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.52
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.41
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.36
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.25
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.11
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.09
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.99
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.95
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.93
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.86
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.79
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.5
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.49
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.36
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.32
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.3
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.19
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.17
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.17
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.09
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.86
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.85
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.78
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.52
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.47
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.33
2xxa_A	433	Signal recognition particle protein; protein trans	97.28
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.22
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.2
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.17
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.17
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.13
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.12
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.1
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.08
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.08
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.05
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.04
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.04
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.01
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.0
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.98
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.98
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.98
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.97
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.97
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.96
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.95
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.94
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.94
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.94
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.89
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.88
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.88
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.87
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.86
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.85
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.85
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.84
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.84
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.83
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.83
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.82
3co5_A	143	Putative two-component system transcriptional RES	96.82
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.81
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.81
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.81
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.81
1g6h_A	257	High-affinity branched-chain amino acid transport	96.81
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.81
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.8
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.8
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.8
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.79
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.78
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.78
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.78
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.78
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.78
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.77
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.77
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.77
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.76
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.76
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.76
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.75
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.75
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.75
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.74
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.74
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.73
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.72
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.72
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.72
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.72
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.72
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.72
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.72
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.7
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.68
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.68
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.67
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.67
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.66
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.66
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.66
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.66
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.65
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.64
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.62
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.62
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.6
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.59
1via_A	175	Shikimate kinase; structural genomics, transferase	96.58
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.58
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.57
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.56
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.56
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.56
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.56
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.55
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.54
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.53
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.51
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.5
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.49
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.49
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.49
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.48
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.48
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.48
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.47
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.46
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.46
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.45
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.45
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.44
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.44
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.43
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.43
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.43
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.43
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.43
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.43
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.42
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.42
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.41
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.41
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.41
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.41
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.4
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.4
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.38
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.37
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.37
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.37
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.35
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.35
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.34
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.34
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.32
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.31
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.3
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.3
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.29
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.29
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.28
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.28
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.27
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.27
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.25
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.24
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.24
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.22
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.17
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.14
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.13
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.13
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.11
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.11
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.1
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.1
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.1
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.09
3bos_A	242	Putative DNA replication factor; P-loop containing	96.08
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.07
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.06
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.05
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.04
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.04
2og2_A	359	Putative signal recognition particle receptor; nuc	96.02
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.01
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.0
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.0
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.99
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.94
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.93
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.9
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.89
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.87
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.83
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.8
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.79
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.78
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.76
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.74
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.72
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.72
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.7
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.68
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.66
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.66
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.65
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.62
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.59
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.57
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.56
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.56
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.52
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.52
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.51
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.44
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.44
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.4
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.39
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.38
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.37
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.35
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.34
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.33
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.32
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.3
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.28
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.28
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.28
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.25
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.25
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.24
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.23
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.23
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.2
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.18
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.17
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.16
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.15
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.14
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.1
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.09
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.08
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.07
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.07
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.06
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.05
2qgz_A	308	Helicase loader, putative primosome component; str	95.04
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.01
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.99
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.97
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.97
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.96
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.95
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.92
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.9
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.9
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.89
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.88
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.88
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	94.85
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.83
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.82
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.82
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.82

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.4e-43  Score=260.27  Aligned_cols=171  Identities=38%  Similarity=0.684  Sum_probs=144.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .+...+||+|+|.+|+|||||+++|+.+.+...+.+|.+.++....+..++..+.+.||||+|++.+..++..+++.+++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            45567999999999999999999999999999999999989998899999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +++|||++++++++.+..|+..+......++|++||+||+|+.+ .+.+..++++.+++.+++.|++|||++|+||+++|
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F  167 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF  167 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence            99999999999999999999999888777899999999999964 56789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027985          171 FSIAREIKQRLV  182 (216)
Q Consensus       171 ~~l~~~~~~~~~  182 (216)
                      +.|++.+.....
T Consensus       168 ~~i~~~i~~~~~  179 (216)
T 4dkx_A          168 RRVAAALPGMES  179 (216)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHHHhhhc
Confidence            999988865443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1e-37  Score=229.26  Aligned_cols=173  Identities=60%  Similarity=1.033  Sum_probs=156.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            45778999999999999999999999999988888888888888888899888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++|.|++++|
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  162 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  162 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766799999999999965 34567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 027985          171 FSIAREIKQRLVES  184 (216)
Q Consensus       171 ~~l~~~~~~~~~~~  184 (216)
                      ++|.+.+.+.....
T Consensus       163 ~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          163 LTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998765544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.5e-36  Score=222.97  Aligned_cols=171  Identities=39%  Similarity=0.697  Sum_probs=149.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            35678999999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNFN  165 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  165 (216)
                      +|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+.  ...+..+++..++. ..++.++++||++|.|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAIN  161 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            9999999999999999999888876543    468999999999996  34566777888877 5668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 027985          166 VEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       166 i~~l~~~l~~~~~~~~~~  183 (216)
                      ++++|++|.+.+.+....
T Consensus       162 i~~l~~~l~~~~~~~~~~  179 (207)
T 1vg8_A          162 VEQAFQTIARNALKQETE  179 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999876654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=4.3e-36  Score=220.36  Aligned_cols=182  Identities=35%  Similarity=0.619  Sum_probs=149.5

Q ss_pred             CCCCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985            1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (216)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (216)
                      |++..+. .......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..+
T Consensus         1 m~~~~~~-~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (206)
T 2bov_A            1 MAANKPK-GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAI   78 (206)
T ss_dssp             -----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred             CCccccc-CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHH
Confidence            4443333 23445679999999999999999999999888777777765444 456678888889999999999999888


Q ss_pred             cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      +..+++.+|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..+++..++.++++|
T Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S  157 (206)
T 2bov_A           79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETS  157 (206)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEe
Confidence            99999999999999999999999999999988877653 4789999999999964 345778888999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          160 AKTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      |++|.|++++|++|.+.+.++..+..
T Consensus       158 a~~g~gi~~l~~~l~~~i~~~~~~~~  183 (206)
T 2bov_A          158 AKTRANVDKVFFDLMREIRARKMEDS  183 (206)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHcccccc
Confidence            99999999999999999987654443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2.2e-35  Score=212.78  Aligned_cols=175  Identities=69%  Similarity=1.176  Sum_probs=128.9

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (183)
T 2fu5_C            3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   82 (183)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence            34578899999999999999999999998888888888888888888888988899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  161 (183)
T 2fu5_C           83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA  161 (183)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999999999999887666799999999999964 3467788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 027985          170 FFSIAREIKQRLVESD  185 (216)
Q Consensus       170 ~~~l~~~~~~~~~~~~  185 (216)
                      |++|.+.+.++..+..
T Consensus       162 ~~~l~~~i~~~~~~~~  177 (183)
T 2fu5_C          162 FFTLARDIKAKMDKNW  177 (183)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999987766544

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=221.29  Aligned_cols=172  Identities=50%  Similarity=0.845  Sum_probs=145.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            35678999999999999999999999999988888888888888888899888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++++|++++|
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  167 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKAF  167 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999877666799999999999964 34567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027985          171 FSIAREIKQRLVE  183 (216)
Q Consensus       171 ~~l~~~~~~~~~~  183 (216)
                      ++|.+.+.++...
T Consensus       168 ~~l~~~i~~~~~~  180 (223)
T 3cpj_B          168 EELINTIYQKVSK  180 (223)
T ss_dssp             HHHHHHHTTCC--
T ss_pred             HHHHHHHHHHhhh
Confidence            9999998765443

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1e-34  Score=210.48  Aligned_cols=177  Identities=53%  Similarity=0.927  Sum_probs=155.5

Q ss_pred             CccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 027985            4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA   83 (216)
Q Consensus         4 ~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   83 (216)
                      ++.......++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..
T Consensus        11 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   90 (189)
T 2gf9_A           11 SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTA   90 (189)
T ss_dssp             ---CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGG
T ss_pred             ccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHH
Confidence            33444445678999999999999999999999999988777888887787778888888899999999999999999999


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN  163 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      +++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|
T Consensus        91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  169 (189)
T 2gf9_A           91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKEN  169 (189)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence            999999999999999999999999999998887666799999999999954 3456778889999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (216)
                      .|++++|++|.+.+.++.
T Consensus       170 ~gi~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          170 INVKQVFERLVDVICEKM  187 (189)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=208.18  Aligned_cols=177  Identities=54%  Similarity=0.925  Sum_probs=154.7

Q ss_pred             cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      |....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            44567789999999999999999999999999888888888888888899999988999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      +|++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+ ...+..++...++...++.++++||++|.|++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  159 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVE  159 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            9999999999999999999999998877654 689999999999864 45577788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc
Q 027985          168 QVFFSIAREIKQRLVESDS  186 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~~~~~  186 (216)
                      ++|++|.+.+.+...+...
T Consensus       160 ~l~~~l~~~~~~~~~~~~~  178 (181)
T 3tw8_B          160 EMFNCITELVLRAKKDNLA  178 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhhhhh
Confidence            9999999999887766543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.8e-35  Score=212.62  Aligned_cols=173  Identities=46%  Similarity=0.839  Sum_probs=155.3

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      +...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999998888888888888888888999889999999999999999899999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|+++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999887666799999999999964 456778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027985          169 VFFSIAREIKQRLV  182 (216)
Q Consensus       169 l~~~l~~~~~~~~~  182 (216)
                      +|++|.+.+.++..
T Consensus       179 l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          179 LFLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999886543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.3e-34  Score=209.16  Aligned_cols=177  Identities=45%  Similarity=0.784  Sum_probs=157.7

Q ss_pred             ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      +|+...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++
T Consensus         2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   81 (186)
T 2bme_A            2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR   81 (186)
T ss_dssp             --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred             CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence            45666788999999999999999999999999998888888888888888889988889999999999999999999999


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++|+|+
T Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  160 (186)
T 2bme_A           82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENV  160 (186)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence            999999999999999999999999888877666899999999999954 3456778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 027985          167 EQVFFSIAREIKQRLVES  184 (216)
Q Consensus       167 ~~l~~~l~~~~~~~~~~~  184 (216)
                      +++|++|.+.+.++..+.
T Consensus       161 ~~l~~~l~~~~~~~~~~~  178 (186)
T 2bme_A          161 EEAFVQCARKILNKIESG  178 (186)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhhhc
Confidence            999999999998765443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=209.76  Aligned_cols=174  Identities=66%  Similarity=1.095  Sum_probs=157.3

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+
T Consensus        10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            34567889999999999999999999999999888889988889889999999889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+..+.++...++.++++||++|.|+++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999999999888777899999999999965 456777888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027985          169 VFFSIAREIKQRLVE  183 (216)
Q Consensus       169 l~~~l~~~~~~~~~~  183 (216)
                      +|++|.+.+.++...
T Consensus       169 l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          169 SFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999866443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.3e-34  Score=209.03  Aligned_cols=171  Identities=50%  Similarity=0.899  Sum_probs=150.8

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            46789999999999999999999999999888888888877888888889888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++++|++++|
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887666899999999999954 44577888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027985          171 FSIAREIKQRLV  182 (216)
Q Consensus       171 ~~l~~~~~~~~~  182 (216)
                      ++|.+.+.++..
T Consensus       176 ~~l~~~i~~~~~  187 (191)
T 2a5j_A          176 INTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=7.3e-34  Score=208.16  Aligned_cols=173  Identities=54%  Similarity=0.957  Sum_probs=155.8

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            35678999999999999999999999999888888888878888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+.++.+++..++.++++||++|.|++++|
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998877666799999999999965 44567888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 027985          171 FSIAREIKQRLVES  184 (216)
Q Consensus       171 ~~l~~~~~~~~~~~  184 (216)
                      ++|.+.+.++..+.
T Consensus       163 ~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          163 ERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998776554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.2e-34  Score=207.85  Aligned_cols=174  Identities=43%  Similarity=0.788  Sum_probs=153.9

Q ss_pred             cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      .....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.
T Consensus        18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   97 (193)
T 2oil_A           18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG   97 (193)
T ss_dssp             --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence            33456788999999999999999999999999888888887777877888888888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      +|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|.|++
T Consensus        98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A           98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999988776666799999999999964 34567788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027985          168 QVFFSIAREIKQRLV  182 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~  182 (216)
                      ++|++|.+.+.++..
T Consensus       177 ~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          177 LAFETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999876653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=211.33  Aligned_cols=170  Identities=49%  Similarity=0.869  Sum_probs=144.8

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            45678999999999999999999999999887788888777878888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQV  169 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l  169 (216)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.+++..++ .++++||++|+|++++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  183 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA  183 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999887666799999999999964 345778889999999998 9999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          170 FFSIAREIKQRL  181 (216)
Q Consensus       170 ~~~l~~~~~~~~  181 (216)
                      |++|.+.+.++.
T Consensus       184 ~~~l~~~i~~~~  195 (201)
T 2hup_A          184 FLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999887543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.8e-34  Score=204.78  Aligned_cols=169  Identities=47%  Similarity=0.867  Sum_probs=151.4

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            45678899999999999999999999999988777888777787888888888899999999999999998999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA  168 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999998887766899999999999954 4456778899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          170 FFSIAREIKQ  179 (216)
Q Consensus       170 ~~~l~~~~~~  179 (216)
                      |++|.+.+.+
T Consensus       169 ~~~l~~~i~~  178 (179)
T 1z0f_A          169 FLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHhh
Confidence            9999987753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.8e-34  Score=203.65  Aligned_cols=165  Identities=61%  Similarity=1.101  Sum_probs=144.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            57999999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.  ...+..++++.+++..++.++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999988776689999999999993  35567888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          174 AREIKQR  180 (216)
Q Consensus       174 ~~~~~~~  180 (216)
                      .+.+.++
T Consensus       160 ~~~~~~~  166 (170)
T 1g16_A          160 AKLIQEK  166 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=208.63  Aligned_cols=173  Identities=45%  Similarity=0.770  Sum_probs=144.3

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            34577899999999999999999999999888888888887888888888988899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++|.|++++
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  178 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEA  178 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999988877666899999999999854 3456778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027985          170 FFSIAREIKQRLVE  183 (216)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (216)
                      |++|.+.+.++..+
T Consensus       179 ~~~l~~~i~~~~~~  192 (200)
T 2o52_A          179 FLKCARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998876544

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=6.5e-34  Score=202.52  Aligned_cols=166  Identities=37%  Similarity=0.773  Sum_probs=143.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45789999999999999999999999988888888888888878888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ++|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            9999999999999999999888776655789999999999964 345678888999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          172 SIAREIK  178 (216)
Q Consensus       172 ~l~~~~~  178 (216)
                      +|.+.+.
T Consensus       162 ~l~~~~~  168 (170)
T 1z08_A          162 DLCKRMI  168 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=8.8e-34  Score=203.91  Aligned_cols=169  Identities=40%  Similarity=0.712  Sum_probs=150.2

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            45678999999999999999999999999888777888777888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF  166 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999999999887666899999999999964 44567888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          171 FSIAREIKQR  180 (216)
Q Consensus       171 ~~l~~~~~~~  180 (216)
                      ++|.+.+.+.
T Consensus       167 ~~l~~~~~~~  176 (181)
T 2efe_B          167 YEIARRLPRV  176 (181)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHHhc
Confidence            9998877543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=208.12  Aligned_cols=174  Identities=59%  Similarity=1.066  Sum_probs=152.4

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+
T Consensus        14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (213)
T 3cph_A           14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA   93 (213)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence            33456789999999999999999999999998888888888888888888998888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.  ...+..+++..+++..++.++++||+++.|+++
T Consensus        94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  171 (213)
T 3cph_A           94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNE  171 (213)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999998888766678999999999993  455677888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 027985          169 VFFSIAREIKQRLVES  184 (216)
Q Consensus       169 l~~~l~~~~~~~~~~~  184 (216)
                      +|++|.+.+.++....
T Consensus       172 l~~~l~~~~~~~~~~~  187 (213)
T 3cph_A          172 IFFTLAKLIQEKIDSN  187 (213)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999988766443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-33  Score=201.58  Aligned_cols=170  Identities=52%  Similarity=0.949  Sum_probs=143.7

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ...+..++|+|+|.+|+|||||+++|++..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            44678899999999999999999999998884 46677878788777778898889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|+++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL  163 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            9999999999999999999999998887666899999999999965 455677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          169 VFFSIAREIKQR  180 (216)
Q Consensus       169 l~~~l~~~~~~~  180 (216)
                      +|++|.+.+.++
T Consensus       164 l~~~l~~~~~~~  175 (180)
T 2g6b_A          164 AFTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999999888644

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=208.67  Aligned_cols=172  Identities=45%  Similarity=0.895  Sum_probs=144.4

Q ss_pred             ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      ...+..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++
T Consensus        18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (192)
T 2il1_A           18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR   97 (192)
T ss_dssp             ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            34456778999999999999999999999999888778888888888888889988899999999999999988999999


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCC
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  165 (216)
                      .+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++.. ++.++++||++|+|
T Consensus        98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A           98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence            999999999999999999999999888887766899999999999954 3456777888888874 78999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~~~~  179 (216)
                      ++++|++|.+.+.+
T Consensus       177 i~~l~~~l~~~i~~  190 (192)
T 2il1_A          177 VDEIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-35  Score=212.85  Aligned_cols=173  Identities=54%  Similarity=0.966  Sum_probs=155.4

Q ss_pred             cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      .....++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.
T Consensus        16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (191)
T 3dz8_A           16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG   95 (191)
T ss_dssp             ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred             cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence            34456788999999999999999999999999888888888777888888887777899999999999999999999999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A           96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVR  174 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999999999999887767899999999999854 45677888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          168 QVFFSIAREIKQRL  181 (216)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (216)
                      ++|++|.+.+.++.
T Consensus       175 ~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          175 QAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.9e-34  Score=211.77  Aligned_cols=176  Identities=49%  Similarity=0.888  Sum_probs=151.8

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe----------EEEEEEEeCCCccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERFR   78 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~   78 (216)
                      ....++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.|||+||++.+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            345678899999999999999999999999988888888887777777777665          6899999999999998


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE  157 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                      ..+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.+++
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~  177 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFE  177 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcEEE
Confidence            8899999999999999999999999999999887765443 5789999999999954 3456788899999999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          158 TSAKTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      +||++++|++++|++|.+.+.++..+..
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999987665544

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=4.1e-33  Score=200.87  Aligned_cols=169  Identities=36%  Similarity=0.590  Sum_probs=149.5

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      .......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34566789999999999999999999999988888888877665 66778888888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC-CCCCH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNV  166 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i  166 (216)
                      |++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+ +++|+
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v  169 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNV  169 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence            9999999999999999999999888654 345789999999999965 56788889999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~~~~  179 (216)
                      +++|++|.+.+.+
T Consensus       170 ~~l~~~l~~~i~~  182 (183)
T 3kkq_A          170 DKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.1e-33  Score=203.33  Aligned_cols=171  Identities=42%  Similarity=0.706  Sum_probs=136.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.|||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45678999999999999999999999999888888888777777777776 55579999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCC
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNF  164 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  164 (216)
                      ++|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+....+..++++.+++ ..+..++++||++|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988876543    5789999999999966556677888888887 456899999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIKQRL  181 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~~  181 (216)
                      |++++|++|.+.+.+++
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQN  180 (182)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4.9e-34  Score=210.48  Aligned_cols=168  Identities=33%  Similarity=0.633  Sum_probs=141.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            34679999999999999999999999888777777766443 45567788788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------CCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR-------AVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+...       .+..+++..+++..++ .++++||++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            9999999999999987 78888877654 789999999999854221       3467888899999996 999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~  181 (216)
                      |+|++++|++|.+.+.+..
T Consensus       164 g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC-
T ss_pred             CCCHHHHHHHHHHHHhhhh
Confidence            9999999999999887543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.9e-33  Score=202.53  Aligned_cols=174  Identities=48%  Similarity=0.872  Sum_probs=152.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~   80 (216)
                      ..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++. ...+..++.         .+.+.|||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4678899999999999999999999999888777888777776 556666655         689999999999999999


Q ss_pred             cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      +..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++|
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S  165 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETS  165 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999999999999999998877654 5789999999999954 345677888999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          160 AKTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      |+++.|++++|++|.+.+.++..+..
T Consensus       166 a~~~~~v~~l~~~l~~~~~~~~~~~~  191 (195)
T 3bc1_A          166 AANGTNISHAIEMLLDLIMKRMERSV  191 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999987665543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=7.5e-33  Score=200.27  Aligned_cols=170  Identities=35%  Similarity=0.615  Sum_probs=146.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.|||+||++.+..++..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999888777666664 445566778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+  ..+..+.++.+++..++.++++||++|.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  158 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY  158 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998887754 34789999999999963  56778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 027985          172 SIAREIKQRLVESD  185 (216)
Q Consensus       172 ~l~~~~~~~~~~~~  185 (216)
                      +|.+.+.++..+..
T Consensus       159 ~l~~~~~~~~~~~~  172 (189)
T 4dsu_A          159 TLVREIRKHKEKMS  172 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcc
Confidence            99999987776654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=3.8e-33  Score=200.43  Aligned_cols=171  Identities=32%  Similarity=0.567  Sum_probs=148.8

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            34567899999999999999999999999888777777765554 66778888889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ++++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|.|+++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  161 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  161 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            999999999999999999999888443 345789999999999964 345778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027985          169 VFFSIAREIKQRLV  182 (216)
Q Consensus       169 l~~~l~~~~~~~~~  182 (216)
                      +|++|.+.+.++..
T Consensus       162 l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          162 AFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999876543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-33  Score=199.17  Aligned_cols=164  Identities=43%  Similarity=0.740  Sum_probs=148.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK--RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.+..  ..+..++.+.+++..++.++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999988766689999999999986432  56778888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          172 SIAREI  177 (216)
Q Consensus       172 ~l~~~~  177 (216)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=205.42  Aligned_cols=169  Identities=37%  Similarity=0.703  Sum_probs=149.2

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            34577899999999999999999999999887777788777777777888877889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|++++
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINIEEL  176 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999999999999887666799999999999954 3456788899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          170 FFSIAREIKQ  179 (216)
Q Consensus       170 ~~~l~~~~~~  179 (216)
                      |++|.+.+.+
T Consensus       177 ~~~l~~~i~~  186 (192)
T 2fg5_A          177 FQGISRQIPP  186 (192)
T ss_dssp             HHHHHHTCC-
T ss_pred             HHHHHHHHHh
Confidence            9999887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.9e-33  Score=197.46  Aligned_cols=165  Identities=39%  Similarity=0.723  Sum_probs=149.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998887888888788888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ++|||++++.++..+..|+..+........|+++|+||+|+.+ ...+..++.+.+++..++.++++||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999999999887666899999999999964 345678888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          172 SIAREI  177 (216)
Q Consensus       172 ~l~~~~  177 (216)
                      +|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=2.9e-33  Score=198.95  Aligned_cols=164  Identities=44%  Similarity=0.761  Sum_probs=147.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999999888877788887787888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...++.++++||++|+|++++|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999998887666899999999999854 3456778888899999999999999999999999999


Q ss_pred             HHHHH
Q 027985          173 IAREI  177 (216)
Q Consensus       173 l~~~~  177 (216)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2e-33  Score=199.49  Aligned_cols=165  Identities=36%  Similarity=0.678  Sum_probs=148.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999888888888887888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887765 4789999999999864 3456778888999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=4.9e-33  Score=200.14  Aligned_cols=168  Identities=31%  Similarity=0.464  Sum_probs=147.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34679999999999999999999998888887778777666 66778888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999998886654 34789999999999954 56678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          171 FSIAREIKQRL  181 (216)
Q Consensus       171 ~~l~~~~~~~~  181 (216)
                      ++|.+.+.+..
T Consensus       161 ~~l~~~~~~~~  171 (181)
T 3t5g_A          161 RRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999886543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.9e-33  Score=203.82  Aligned_cols=168  Identities=43%  Similarity=0.809  Sum_probs=145.2

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d   89 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+. .++..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            45678999999999999999999999999888888888888888888889888999999999999887 78888999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC---CC
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN---FN  165 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~  165 (216)
                      ++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++   +|
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            9999999999999999999999887765 45789999999999954 3456788889999999999999999999   99


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~~~~  179 (216)
                      ++++|++|.+.+.+
T Consensus       175 i~~l~~~l~~~i~~  188 (189)
T 1z06_A          175 VEAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.5e-33  Score=201.05  Aligned_cols=167  Identities=40%  Similarity=0.725  Sum_probs=149.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .+...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            34567999999999999999999999999888888888888888888899988899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +++|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..++.+.+++..++.++++||++|.|++++|
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  168 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  168 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999988877666799999999999964 34567788888999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          171 FSIAREIK  178 (216)
Q Consensus       171 ~~l~~~~~  178 (216)
                      ++|.+.+.
T Consensus       169 ~~l~~~~~  176 (179)
T 2y8e_A          169 RRVAAALP  176 (179)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHh
Confidence            99987664

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=206.70  Aligned_cols=176  Identities=27%  Similarity=0.463  Sum_probs=142.1

Q ss_pred             cccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 027985            6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY   85 (216)
Q Consensus         6 ~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   85 (216)
                      +.+.......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+...+..++
T Consensus        15 ~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   93 (201)
T 3oes_A           15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI   93 (201)
T ss_dssp             --------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGT
T ss_pred             CCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHH
Confidence            44455566789999999999999999999999998887777776555 55566666668999999999999999999999


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      +.+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.
T Consensus        94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (201)
T 3oes_A           94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQ  172 (201)
T ss_dssp             TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred             hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence            99999999999999999999999998886653 34689999999999964 45677888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh
Q 027985          165 NVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~~  183 (216)
                      |++++|++|.+.+.+....
T Consensus       173 ~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          173 LTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHhhhhh
Confidence            9999999999998765433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=7.6e-33  Score=199.91  Aligned_cols=165  Identities=22%  Similarity=0.372  Sum_probs=142.5

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......+||+|+|.+|+|||||+++|++..+...+.++..  .+...+.+++..+.+.|||++|++.+.     +++.+|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            3566789999999999999999999999998777777633  445778889988999999999987765     788899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMD-ESKRAVPTAKGQELADEYG-IKFFETSAKTNFNV  166 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  166 (216)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .....+..++++.+++..+ +.++++||++|+|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999877642 468999999999985 3356688889999999997 89999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQRL  181 (216)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (216)
                      +++|++|.+.+.++.
T Consensus       168 ~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          168 ERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1e-32  Score=197.63  Aligned_cols=167  Identities=39%  Similarity=0.683  Sum_probs=145.4

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            35678999999999999999999999999888888888888888888899988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNFN  165 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  165 (216)
                      +++|||++++.++..+..|+..+.....    .+.|+++|+||+|+.  ...+..++++.+++ ..++.++++||++|.|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATN  160 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            9999999999999999999988876553    578999999999986  35667788888887 5568999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~~~~  179 (216)
                      ++++|++|.+.+.+
T Consensus       161 i~~l~~~l~~~~~~  174 (177)
T 1wms_A          161 VAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.2e-34  Score=207.12  Aligned_cols=164  Identities=32%  Similarity=0.487  Sum_probs=140.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            34569999999999999999999999888776666665433 34566788888999999999999888888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+  ..+..+++..++...++.++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL  161 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence            999999999999999888877766542  3689999999999964  456778888899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          170 FFSIAREIK  178 (216)
Q Consensus       170 ~~~l~~~~~  178 (216)
                      |++|.+.+.
T Consensus       162 ~~~l~~~~~  170 (199)
T 2gf0_A          162 FQELLTLET  170 (199)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHHHHh
Confidence            999988664

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.7e-33  Score=201.95  Aligned_cols=172  Identities=46%  Similarity=0.800  Sum_probs=151.7

Q ss_pred             ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      .+.......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++
T Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (195)
T 1x3s_A            7 GMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR   86 (195)
T ss_dssp             --CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred             CcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34445567899999999999999999999999988888888888888888888988899999999999999999999999


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                      .+|++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.  ...+..+++..+++..++.++++||+++.|
T Consensus        87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (195)
T 1x3s_A           87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDG  164 (195)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            9999999999999999999999998887654 2468999999999994  355677888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQR  180 (216)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (216)
                      ++++|++|.+.+.+.
T Consensus       165 i~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          165 VQCAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=206.54  Aligned_cols=168  Identities=46%  Similarity=0.792  Sum_probs=138.5

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            45568999999999999999999999998877777887777878888889888999999999999998889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE-----SKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+     ....+..++++.+++..++.++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            99999999999999999999988877666799999999999952     3456778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIK  178 (216)
Q Consensus       166 i~~l~~~l~~~~~  178 (216)
                      ++++|++|.+.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3.6e-33  Score=206.25  Aligned_cols=171  Identities=20%  Similarity=0.449  Sum_probs=144.6

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......+||+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3456789999999999999999999999999888888877665 455667777789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEE
Q 027985           90 GILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFF  156 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~  156 (216)
                      ++|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.++           ...+..+++..+++..++ .++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999998 688998888775 47899999999999643           356888999999999999 999


Q ss_pred             EEecCCCCC-HHHHHHHHHHHHHHHHh
Q 027985          157 ETSAKTNFN-VEQVFFSIAREIKQRLV  182 (216)
Q Consensus       157 ~~Sa~~~~~-i~~l~~~l~~~~~~~~~  182 (216)
                      ++||++|.| ++++|++|.+.+.+...
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999998 99999999998875443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.1e-32  Score=200.59  Aligned_cols=169  Identities=28%  Similarity=0.558  Sum_probs=145.9

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      .......++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.|||+||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   95 (194)
T 3reg_A           17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS   95 (194)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             ccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence            345667899999999999999999999999988777787765554 4567888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHhCCc-EEEEecCCCCC
Q 027985           89 MGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPTAKGQELADEYGIK-FFETSAKTNFN  165 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~  165 (216)
                      |++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. ...+..++++.+++..++. ++++||++|+|
T Consensus        96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (194)
T 3reg_A           96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG  174 (194)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence            999999999999999997 66777777654 46899999999999653 4567889999999999987 99999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~~~~  179 (216)
                      ++++|++|.+.+.+
T Consensus       175 i~~l~~~l~~~i~~  188 (194)
T 3reg_A          175 LNEVFEKSVDCIFS  188 (194)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=6.3e-33  Score=197.29  Aligned_cols=164  Identities=28%  Similarity=0.396  Sum_probs=132.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   93 (216)
                      .++|+|+|.+|+|||||+++|++........++.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998877666666667778888888999889999999999988765 67778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            9999999999999999998877654 4789999999999964 4667888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      |.+.+..
T Consensus       161 l~~~i~~  167 (169)
T 3q85_A          161 AVRQIRL  167 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.7e-33  Score=201.86  Aligned_cols=167  Identities=34%  Similarity=0.555  Sum_probs=144.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++ ..+.+.|||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34579999999999999999999999888777778877778778888876 56899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVN-KILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      +|+|||++++.+++.+..|+..+.....  ...| +++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  161 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF  161 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence            9999999999999999999888876432  1345 789999999954 34567788899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          168 QVFFSIAREIKQ  179 (216)
Q Consensus       168 ~l~~~l~~~~~~  179 (216)
                      ++|++|.+.+.+
T Consensus       162 ~l~~~l~~~~~~  173 (178)
T 2hxs_A          162 LCFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=200.25  Aligned_cols=171  Identities=30%  Similarity=0.483  Sum_probs=138.7

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.... ....+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEE-EEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccce-eEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            356678999999999999999999999988877767766533 3456778888889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEE
Q 027985           90 GILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFF  156 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~  156 (216)
                      ++|+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.           ...+..+++..+++..++ .++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            999999999999999997 68888877654 7899999999999652           356778889999999887 999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHh
Q 027985          157 ETSAKTNFNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (216)
                      ++||++|+|++++|++|.+.+.+...
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCCHHHHHHHHHHHHhcccc
Confidence            99999999999999999998876644

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=195.98  Aligned_cols=168  Identities=31%  Similarity=0.451  Sum_probs=133.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--cccccccccccccE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG   90 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   90 (216)
                      +..++|+|+|.+|+|||||+++|++..+...+. +.+.+.....+.+++..+.+.+||+||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            357999999999999999999999887755433 344456667778888888999999999887  45666778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|+|++++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  159 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAEL  159 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence            999999999999999999988887653 34789999999999965 3557778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027985          170 FFSIAREIKQRLV  182 (216)
Q Consensus       170 ~~~l~~~~~~~~~  182 (216)
                      |++|.+.+.++..
T Consensus       160 ~~~l~~~~~~~~~  172 (175)
T 2nzj_A          160 FEGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998875543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=203.07  Aligned_cols=168  Identities=28%  Similarity=0.389  Sum_probs=141.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d   89 (216)
                      ..+..++|+|+|.+|+|||||+++|++........++.+.+.....+.+++..+.+.|||++|++.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            456789999999999999999999986544434455556666677788899889999999999987654 6777889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|+++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  177 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  177 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence            99999999999999999999988877543 4789999999999965 455778888999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          169 VFFSIAREIKQ  179 (216)
Q Consensus       169 l~~~l~~~~~~  179 (216)
                      +|++|.+.+.+
T Consensus       178 lf~~l~~~i~~  188 (195)
T 3cbq_A          178 LFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=3.7e-32  Score=198.98  Aligned_cols=167  Identities=35%  Similarity=0.624  Sum_probs=146.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------------------
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------------------   63 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   63 (216)
                      +.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..                           
T Consensus         3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence            34567999999999999999999999999888888888777777777777655                           


Q ss_pred             ----------EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           64 ----------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        64 ----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                                +.+.|||+||++.+...+..+++.+|++|+|+|++++.++..+..|+..+.....  .|+++|+||+|. 
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~-  159 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK-  159 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC-
T ss_pred             cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc-
Confidence                      7899999999999999999999999999999999999999999999988877653  899999999993 


Q ss_pred             CCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                       ....+..++++.+++..++.++++||++|.|++++|++|.+.+.++.
T Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence             34567788999999999999999999999999999999999887653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=7.4e-33  Score=203.26  Aligned_cols=174  Identities=24%  Similarity=0.524  Sum_probs=142.8

Q ss_pred             CccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 027985            4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA   83 (216)
Q Consensus         4 ~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   83 (216)
                      +++.|.......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..
T Consensus        17 ~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   95 (205)
T 1gwn_A           17 RGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPL   95 (205)
T ss_dssp             ----------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGG
T ss_pred             CCCCCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHh
Confidence            4456666677889999999999999999999999998877777776555 345667777899999999999999999999


Q ss_pred             ccccccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHh
Q 027985           84 YYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEY  151 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~  151 (216)
                      +++.+|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.           ...+..++++.+++.+
T Consensus        96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A           96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            99999999999999999999998 688888877643 6899999999999642           2457788899999988


Q ss_pred             C-CcEEEEecC-CCCCHHHHHHHHHHHHHH
Q 027985          152 G-IKFFETSAK-TNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       152 ~-~~~~~~Sa~-~~~~i~~l~~~l~~~~~~  179 (216)
                      + +.++++||+ +++|++++|++|.+.+..
T Consensus       175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          175 GAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            8 699999999 689999999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=199.04  Aligned_cols=165  Identities=29%  Similarity=0.479  Sum_probs=139.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..+ ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345679999999999999999999999988877777776554 455677888899999999999887764 568899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec-CCCCCH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA-KTNFNV  166 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i  166 (216)
                      +|+|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++|| ++|+|+
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            999999999999999999998887764   24789999999999954 4567888899999999999999999 899999


Q ss_pred             HHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIK  178 (216)
Q Consensus       167 ~~l~~~l~~~~~  178 (216)
                      +++|++|.+.+.
T Consensus       174 ~~lf~~l~~~i~  185 (187)
T 3c5c_A          174 QHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998775

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3.5e-32  Score=196.34  Aligned_cols=171  Identities=36%  Similarity=0.633  Sum_probs=146.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            3455689999999999999999999999888777777665444 455677888889999999999999888999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            99999999999999999999988877654 4789999999999964 345678888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027985          169 VFFSIAREIKQRLV  182 (216)
Q Consensus       169 l~~~l~~~~~~~~~  182 (216)
                      +|++|.+.+.++..
T Consensus       171 l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          171 VFFDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999876554

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=5e-32  Score=194.34  Aligned_cols=165  Identities=23%  Similarity=0.372  Sum_probs=137.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+|+|.+|+|||||+++|++..+.. +.++.+ +.+...+.+++..+.+.|||+||++.     ..+++.+|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            457999999999999999999999988876 556655 33456677888889999999999875     45788899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHh-CCcEEEEecCCCCCHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDE-SKRAVPTAKGQELADEY-GIKFFETSAKTNFNVE  167 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  167 (216)
                      +|||+++++++..+..|+..+....   ..+.|+++|+||+|+.+ ....+..++++.+++.. ++.++++||++|+|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999876665443   35789999999999853 34567888888898877 5899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 027985          168 QVFFSIAREIKQRLVES  184 (216)
Q Consensus       168 ~l~~~l~~~~~~~~~~~  184 (216)
                      ++|++|.+.+.+...+.
T Consensus       158 ~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999988765543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.7e-32  Score=196.73  Aligned_cols=165  Identities=28%  Similarity=0.558  Sum_probs=143.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            45789999999999999999999999988777777765444 45567777778999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEE
Q 027985           92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFET  158 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~  158 (216)
                      |+|||+++++++..+. .|+..+..... +.|+++|+||+|+.+.           .+.+..+++..+++..++ .++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999997 78888877644 7899999999999653           245778889999999997 99999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ||++|+|++++|++|.+.+.
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-32  Score=200.40  Aligned_cols=171  Identities=27%  Similarity=0.411  Sum_probs=136.7

Q ss_pred             cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccccccc
Q 027985            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAY   84 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~   84 (216)
                      .+...+..+||+|+|.+|+|||||+++|++...  ... .++.+.+++...+.+++..+.+.+||++|.+. +..+...+
T Consensus        30 ~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~  108 (211)
T 2g3y_A           30 SSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC  108 (211)
T ss_dssp             -----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCC
T ss_pred             ccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHH
Confidence            334556789999999999999999999996433  333 23455566667788899888999999999876 45566678


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN  163 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      ++.++++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...++.++++||++|
T Consensus       109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g  187 (211)
T 2g3y_A          109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQ  187 (211)
T ss_dssp             CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence            899999999999999999999999988776532 34789999999999954 3557777888888889999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIKQR  180 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (216)
                      +||+++|++|.+.+..+
T Consensus       188 ~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          188 HNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999987543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=5e-33  Score=204.20  Aligned_cols=172  Identities=24%  Similarity=0.479  Sum_probs=114.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeeEEEEEEEEECCe--EEEEEEEeCCCccccccccccccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ...++|+|+|.+|+|||||+++|++.  .+...+.++.+.++....+.+++.  .+.+.|||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999988  777777777776777778888876  78999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC-CC
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT-NF  164 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  164 (216)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+....+..++++.+++..++.++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   57999999999999642456778889999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHHhhh
Q 027985          165 NVEQVFFSIAREIKQRLVES  184 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~~~  184 (216)
                      |++++|++|.+.+.++..+.
T Consensus       178 gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhh
Confidence            99999999999888765544

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=6.4e-32  Score=191.55  Aligned_cols=163  Identities=32%  Similarity=0.456  Sum_probs=120.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|++....... ++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999977654332 2222222 45667888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.++...++.++++||++|+|++++|++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            99999999999999998887653 35789999999999965 46678888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          174 AREIKQR  180 (216)
Q Consensus       174 ~~~~~~~  180 (216)
                      .+.+.++
T Consensus       159 ~~~~~~~  165 (166)
T 3q72_A          159 VRQIRLR  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=4.2e-32  Score=192.49  Aligned_cols=163  Identities=37%  Similarity=0.668  Sum_probs=140.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.|||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999888777767665444 3456788888899999999999988889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            9999999999999999988877654 4789999999999965 3457788899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          173 IAREIK  178 (216)
Q Consensus       173 l~~~~~  178 (216)
                      |.+.+.
T Consensus       161 l~~~i~  166 (168)
T 1u8z_A          161 LMREIR  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=2.3e-31  Score=192.82  Aligned_cols=168  Identities=37%  Similarity=0.591  Sum_probs=134.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.. ....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            34577999999999999999999999988877666665533 34566778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      +++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+  ..+..++++.+++..++.++++||+++.|++++
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999888876543 4689999999999865  456788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          170 FFSIAREIKQRL  181 (216)
Q Consensus       170 ~~~l~~~~~~~~  181 (216)
                      |++|.+.+.++.
T Consensus       174 ~~~l~~~~~~~~  185 (190)
T 3con_A          174 FYTLVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=5.2e-32  Score=191.85  Aligned_cols=164  Identities=35%  Similarity=0.607  Sum_probs=142.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|++|+|||||+++|++..+...+.++.+. .....+.+++..+.+.|||+||++.+..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            3589999999999999999999998887777776653 335667788888899999999999998888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.+++..+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            999999999999999988887654 35789999999999854 4556778888999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      |.+.+.+
T Consensus       160 l~~~~~~  166 (167)
T 1kao_A          160 IVRQMNY  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=6.4e-32  Score=191.56  Aligned_cols=162  Identities=35%  Similarity=0.650  Sum_probs=140.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            368999999999999999999999888777777776544 3556677777899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCCHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++.. ++.++++||++|.|++++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            999999999999999988887653 45789999999999964 4556778888888887 78999999999999999999


Q ss_pred             HHHHHH
Q 027985          172 SIAREI  177 (216)
Q Consensus       172 ~l~~~~  177 (216)
                      +|.+.+
T Consensus       160 ~l~~~i  165 (167)
T 1c1y_A          160 DLVRQI  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998876

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-31  Score=195.77  Aligned_cols=167  Identities=36%  Similarity=0.578  Sum_probs=143.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            34579999999999999999999999988877777776544 45567788889999999999887 67778889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC-CHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQV  169 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l  169 (216)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|. |++++
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEI  181 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence            99999999999999999988887654 35789999999999965 35677888999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHH
Q 027985          170 FFSIAREIKQRL  181 (216)
Q Consensus       170 ~~~l~~~~~~~~  181 (216)
                      |++|.+.+.++.
T Consensus       182 ~~~l~~~i~~~~  193 (196)
T 2atv_A          182 FYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999887654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.9e-32  Score=202.77  Aligned_cols=173  Identities=30%  Similarity=0.498  Sum_probs=144.7

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.|||+||++.+...+..+++.+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            345678999999999999999999999988877777777666665555444 3347899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+.+..++...++.++++||++|.|+++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  164 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL  164 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence            9999999999999999999999999887776799999999999964 446777888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027985          169 VFFSIAREIKQRLVE  183 (216)
Q Consensus       169 l~~~l~~~~~~~~~~  183 (216)
                      +|++|.+.+.++...
T Consensus       165 l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          165 PFLHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHhccccc
Confidence            999999988655433

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=7.9e-32  Score=194.49  Aligned_cols=165  Identities=25%  Similarity=0.547  Sum_probs=141.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988777777776554 34567777788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEE
Q 027985           92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFET  158 (216)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~  158 (216)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.           ...+..++++.+++.++ +.++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67888887664 37899999999999642           24577888999999888 699999


Q ss_pred             ecC-CCCCHHHHHHHHHHHHH
Q 027985          159 SAK-TNFNVEQVFFSIAREIK  178 (216)
Q Consensus       159 Sa~-~~~~i~~l~~~l~~~~~  178 (216)
                      ||+ +++|++++|++|.+.+.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHHHHh
Confidence            999 68999999999998875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.6e-31  Score=194.44  Aligned_cols=165  Identities=33%  Similarity=0.608  Sum_probs=142.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.++. ..+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            456899999999999999999999999887777777765554 3467888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEE
Q 027985           92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET  158 (216)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~  158 (216)
                      |+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+..           +.+..+++..+++..++ .++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            999999999999998 57777776654 378999999999996531           35677888899999887 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ||++|+|++++|++|.+.+.
T Consensus       180 SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=3e-31  Score=191.39  Aligned_cols=164  Identities=31%  Similarity=0.599  Sum_probs=142.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4679999999999999999999999888777666665333 455678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEe
Q 027985           93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.           ...+..+++..+++..++ .++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 68888877654 7899999999998653           245677888889999987 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (216)
                      |++|.|++++|++|.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHHHh
Confidence            9999999999999998874

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=210.24  Aligned_cols=167  Identities=68%  Similarity=1.129  Sum_probs=141.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            45678999999999999999999999999988888888888888889999988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~  187 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  187 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999877666899999999999964 34455566778888889999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          171 FSIAREIK  178 (216)
Q Consensus       171 ~~l~~~~~  178 (216)
                      ++|.+.+.
T Consensus       188 ~~l~~~l~  195 (199)
T 3l0i_B          188 MTMAAEIK  195 (199)
T ss_dssp             HHHTTTTT
T ss_pred             HHHHHHHH
Confidence            99987664

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=197.56  Aligned_cols=167  Identities=34%  Similarity=0.597  Sum_probs=123.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.. +...+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            357999999999999999999999988877666666433 3456678888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEe
Q 027985           93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..           ..+..+++..+++..++ .++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999987 6888887664 468999999999996532           35677888999999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      |++|.|++++|++|.+.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.7e-31  Score=185.83  Aligned_cols=161  Identities=37%  Similarity=0.630  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            5899999999999999999999988876666665533 345667788888999999999998888888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+  .....+.++.+++..++.++++||+++.|++++|++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988876643 3689999999999865  4567788899999999999999999999999999999


Q ss_pred             HHHHH
Q 027985          174 AREIK  178 (216)
Q Consensus       174 ~~~~~  178 (216)
                      .+.+.
T Consensus       160 ~~~~~  164 (166)
T 2ce2_X          160 VREIR  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=2e-31  Score=194.37  Aligned_cols=172  Identities=16%  Similarity=0.292  Sum_probs=129.1

Q ss_pred             ccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 027985            5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA   83 (216)
Q Consensus         5 ~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   83 (216)
                      ++..........+|+|+|.+|+|||||+++|++..+.. .+.++.+  .....+...+  +.+.|||+||++.+..++..
T Consensus         7 ~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~   82 (199)
T 4bas_A            7 HHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWET   82 (199)
T ss_dssp             ---------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGG
T ss_pred             ccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHH
Confidence            34445567789999999999999999999999999877 6677766  3334445544  79999999999999999999


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCCCCHHHHH-HH-----HH
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA--------DNVNKILVGNKADMDESKRAVPTAKGQ-EL-----AD  149 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~-----~~  149 (216)
                      +++.+|++|+|||++++.++..+..|+..+.....        .+.|+++|+||+|+.+..   ..+++. .+     ++
T Consensus        83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~  159 (199)
T 4bas_A           83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---TAAELVEILDLTTLMG  159 (199)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHHHTHHHHHT
T ss_pred             HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---CHHHHHHHhcchhhcc
Confidence            99999999999999999999999999887755421        268999999999996532   122221 11     13


Q ss_pred             HhCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          150 EYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      ..++.++++||++|+|++++|++|.+.+.++..+
T Consensus       160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          160 DHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             TSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             CCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            3567899999999999999999999998866443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.4e-31  Score=194.05  Aligned_cols=165  Identities=35%  Similarity=0.599  Sum_probs=136.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.|||+||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45789999999999999999999999887777777665544 34678888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEe
Q 027985           93 LVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+..           ..+..++...++...++ .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67877777654 478999999999996531           34677788889988887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (216)
                      |++|.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=1.3e-31  Score=195.12  Aligned_cols=168  Identities=22%  Similarity=0.309  Sum_probs=136.0

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-----------cccceeeEEEEEEE-EECCeEEEEEEEeCCCcccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~   77 (216)
                      ...+..+||+|+|.+|+|||||++.+.+. +...           ..++.+.++....+ .+++..+.+.|||+||++.+
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            34567899999999999999999766554 3333           23444444444334 55667789999999999999


Q ss_pred             ccccccccccccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 027985           78 RTITTAYYRGAMGILLVYDVT------DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY  151 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  151 (216)
                      ...+..+++.+|++|+|||++      +.+++..+..|+..+.. ...+.|+++|+||+|+.+   .+..++++.+++..
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~  163 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPE  163 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhc
Confidence            999999999999999999999      45677777778777632 335789999999999955   37788899999999


Q ss_pred             CC-cEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027985          152 GI-KFFETSAKTNFNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       152 ~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (216)
                      ++ .++++||++|+|++++|++|.+.+.++..
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            98 99999999999999999999999987654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.4e-31  Score=187.53  Aligned_cols=162  Identities=30%  Similarity=0.476  Sum_probs=138.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            358999999999999999999999888766666655443 3445677777899999999999888888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+ ...+...+.+.++...++.++++||++|.|++++|+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            9999999999999999888776532  3689999999999854 345677788888899999999999999999999999


Q ss_pred             HHHHHH
Q 027985          172 SIAREI  177 (216)
Q Consensus       172 ~l~~~~  177 (216)
                      +|.+.+
T Consensus       160 ~l~~~~  165 (172)
T 2erx_A          160 ELLNLE  165 (172)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            998765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=1.5e-31  Score=198.41  Aligned_cols=168  Identities=30%  Similarity=0.621  Sum_probs=145.6

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      .......++|+|+|.+|+|||||+++|+...+...+.++.+.+.....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34567789999999999999999999887777677777777778888888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+..  . ......+++..++.++++||++|.|+++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNLQYYDISAKSNYNFEK  164 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccc--c-cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999999987754 78999999999996522  2 2255667888899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          169 VFFSIAREIKQR  180 (216)
Q Consensus       169 l~~~l~~~~~~~  180 (216)
                      +|++|.+.+...
T Consensus       165 l~~~l~~~l~~~  176 (221)
T 3gj0_A          165 PFLWLARKLIGD  176 (221)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988644

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=1.1e-31  Score=193.17  Aligned_cols=164  Identities=32%  Similarity=0.646  Sum_probs=125.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45699999999999999999999998887766666543332 23445666678899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---------CCCHHHHHHHHHHhCC-cEEEEecC
Q 027985           93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR---------AVPTAKGQELADEYGI-KFFETSAK  161 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (216)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+...         .+..+++..+++..++ .++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999997 68888877654 789999999999855322         2467788889999996 99999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIK  178 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (216)
                      +|+|++++|++|.+.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=3.5e-30  Score=187.18  Aligned_cols=167  Identities=28%  Similarity=0.432  Sum_probs=134.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM   89 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   89 (216)
                      +..+||+|+|.+|+|||||+++|++..  +...+ ++.+.+++...+.+++..+.+.+||++|.+. ...++..+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999998633  33332 3345556667778899888999999999776 4556677788899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ++++|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...++.++++||++|.||++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~  161 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE  161 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence            9999999999999999999988776643 34789999999999854 345677777888888889999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          169 VFFSIAREIKQRL  181 (216)
Q Consensus       169 l~~~l~~~~~~~~  181 (216)
                      +|++|.+.+..+.
T Consensus       162 lf~~l~~~~~~~~  174 (192)
T 2cjw_A          162 LFEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999886544

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=9.5e-31  Score=191.89  Aligned_cols=164  Identities=32%  Similarity=0.599  Sum_probs=137.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45679999999999999999999999888777666664 44456667788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEE
Q 027985           92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET  158 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~  158 (216)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..           ..+..+++..+++..++ .++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999997 7888887765 478999999999986532           23677888889999986 59999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ||++|+|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.3e-29  Score=185.09  Aligned_cols=169  Identities=50%  Similarity=0.857  Sum_probs=147.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            56799999999999999999999999888888888877788888889998889999999999988888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|+|+.+..+++.+..|+..+......+.|+++|+||+|+.+ ......++++.++...++.++++|++++.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999988898877665555789999999999954 3456677888999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027985          173 IAREIKQRLV  182 (216)
Q Consensus       173 l~~~~~~~~~  182 (216)
                      |.+.+.+...
T Consensus       162 l~~~~~~~~~  171 (199)
T 2f9l_A          162 ILTEIYRIVS  171 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999876543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.3e-30  Score=186.27  Aligned_cols=162  Identities=19%  Similarity=0.340  Sum_probs=129.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .....++|+|+|.+|+|||||+++|++.. +...+.++.+  .....+.+++  +.+.|||+||++.+...+..+++.+|
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            45567999999999999999999999887 4555556554  5556666666  68999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecC
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAK  161 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  161 (216)
                      ++|+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+   ....+++..+..     ..++.++++||+
T Consensus        93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccCC
Confidence            99999999999999999999888876543   4789999999999954   334455555543     234689999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (216)
                      +|+|++++|++|.+.+.+
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999887743

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=3.9e-30  Score=183.09  Aligned_cols=158  Identities=22%  Similarity=0.401  Sum_probs=125.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|++..+.. +.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|++++
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            45899999999999999999999887743 444444  4445566665  689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-----HHHhCCcEEEEecCCCCCHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQEL-----ADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..   ....+...     +...++.++++||++|+|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            999999999999988887775532 2478999999999996522   22222222     12234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          168 QVFFSIAREIKQ  179 (216)
Q Consensus       168 ~l~~~l~~~~~~  179 (216)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.1e-29  Score=183.87  Aligned_cols=162  Identities=22%  Similarity=0.402  Sum_probs=128.4

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++.  .+...+  +.+.|||+||++.+...+..+++.+|+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSA   93 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCE
Confidence            3456899999999999999999999998887777777665543  345554  789999999999999989999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNF  164 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  164 (216)
                      +|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.   ...+++.....     ..++.++++||++|.
T Consensus        94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  170 (188)
T 1zd9_A           94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAIQDREICCYSISCKEKD  170 (188)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC---CCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence            999999999999999999888776532 257899999999999652   22222222111     123578999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIKQ  179 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (216)
                      |++++|++|.+.+.+
T Consensus       171 gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          171 NIDITLQWLIQHSKS  185 (188)
T ss_dssp             THHHHHHHHHHTCC-
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999887643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=6.2e-30  Score=184.06  Aligned_cols=158  Identities=21%  Similarity=0.313  Sum_probs=123.8

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+ ..+.++.+.  ....+.+++  +.+.|||+||++.+...+..+++.+|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS--SCEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce--eeEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            455679999999999999999999998887 344444443  334556666  789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNF  164 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  164 (216)
                      +|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+   ....+++.....     ..++.++++||++|.
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc---CCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            999999999999999999888776542 34789999999999854   233344433321     234589999999999


Q ss_pred             CHHHHHHHHHHH
Q 027985          165 NVEQVFFSIARE  176 (216)
Q Consensus       165 ~i~~l~~~l~~~  176 (216)
                      |++++|++|.+.
T Consensus       169 gi~~l~~~l~~~  180 (181)
T 2h17_A          169 GLCQGLEWMMSR  180 (181)
T ss_dssp             THHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=5.5e-29  Score=179.72  Aligned_cols=160  Identities=23%  Similarity=0.408  Sum_probs=128.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++.. ...+.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999887 556666655  3445566665  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNV  166 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  166 (216)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.   ...+++.....     ..++.++++||++|+|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL  167 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence            999999999999999988877654 2347899999999999652   22333333221     23468999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (216)
                      +++|++|.+.+.++
T Consensus       168 ~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          168 LPGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.7e-28  Score=178.06  Aligned_cols=167  Identities=51%  Similarity=0.897  Sum_probs=147.5

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .+.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++
T Consensus        24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~  103 (191)
T 1oix_A           24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV  103 (191)
T ss_dssp             CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence            34567899999999999999999999999988888888888888888999998888999999999988888888899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      ++++|+|..+..+++.+..|+..+........|+++|+||+|+.+ ......++++.++...++.++++|++++.|++++
T Consensus       104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l  182 (191)
T 1oix_A          104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA  182 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999888888877665555789999999999954 3456678888999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          170 FFSIAREI  177 (216)
Q Consensus       170 ~~~l~~~~  177 (216)
                      |++|.+.+
T Consensus       183 ~~~l~~~i  190 (191)
T 1oix_A          183 FQTILTEI  190 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.4e-29  Score=184.75  Aligned_cols=155  Identities=21%  Similarity=0.310  Sum_probs=120.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+++|++|+|||||+++|.+..+.. +.++.+.  ....+.+++  +.+.+|||||++.+..++..+++.+|++++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP--TSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC--SCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCc--eeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999877643 3444433  235666777  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----------------hCCcE
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-----------------YGIKF  155 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~  155 (216)
                      |+|+++++++..+..|+..+... ...+.|+++|+||+|+.+   .+..++++.+...                 .++.+
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            99999999999999998887654 234789999999999954   4566777766542                 23579


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q 027985          156 FETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      +++||++|+|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1.9e-30  Score=183.60  Aligned_cols=156  Identities=21%  Similarity=0.408  Sum_probs=121.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      ++|+|+|.+|+|||||+++|++..+.. +.|+.+  .....+...+  +.+.|||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877754 345544  3344455544  68999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      |+++++++..+..|+..+... ...+.|+++|+||+|+.+.   ....++.....     ..++.++++||++|.|++++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  152 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence            999999999999888877553 2347899999999999542   22222222111     12356999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          170 FFSIAREIKQ  179 (216)
Q Consensus       170 ~~~l~~~~~~  179 (216)
                      |++|.+.+.+
T Consensus       153 ~~~l~~~i~~  162 (164)
T 1r8s_A          153 LDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHhh
Confidence            9999987754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=4e-29  Score=181.26  Aligned_cols=155  Identities=22%  Similarity=0.296  Sum_probs=125.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+++|++|+|||||+++|.+..+.. +.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCS--CEEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCC--CCeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999887743 344444  3455677777  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH------------hCCcEEEEec
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE------------YGIKFFETSA  160 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  160 (216)
                      |||++++++++.+..|+..+... ...+.|+++|+||+|+.+   .+..+++..+...            .++.++++||
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            99999999999999998887653 234789999999999954   4555666555432            3457999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIARE  176 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~  176 (216)
                      ++|+|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.5e-29  Score=181.73  Aligned_cols=159  Identities=21%  Similarity=0.326  Sum_probs=124.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+. .+.++.+  .....+.+++  +.+.|||+||++.+...+..+++.+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999987775 4455544  3344556666  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNV  166 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  166 (216)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+   ....+++.....     ..++.++++||++|+|+
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  165 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC---CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence            9999999999999999988886642 24789999999999954   233444444332     23468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~~~~  179 (216)
                      +++|++|.+.+..
T Consensus       166 ~~l~~~l~~~~~~  178 (187)
T 1zj6_A          166 CQGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987743

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2.8e-29  Score=180.66  Aligned_cols=161  Identities=20%  Similarity=0.356  Sum_probs=125.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|++|+|||||+++|++..+ ..+.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999998776 34444444  3344556665  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNV  166 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i  166 (216)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++......     .++.++++||++|+|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGI  167 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            9999999999999999988876543 357899999999998542   233444333321     2347999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQRL  181 (216)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (216)
                      +++|++|.+.+.+++
T Consensus       168 ~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          168 TEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=8.3e-30  Score=185.70  Aligned_cols=169  Identities=19%  Similarity=0.240  Sum_probs=120.1

Q ss_pred             cccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccc---
Q 027985            6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTIT---   81 (216)
Q Consensus         6 ~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---   81 (216)
                      +.........+||+|+|.+|+|||||++++.+... .....+...........+. +..+.+.|||+||++.+....   
T Consensus        11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             ---------CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            44445677899999999999999999998877533 2222222222222222232 445789999999999876665   


Q ss_pred             ccccccccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CCCCCHHHHHHHHH----
Q 027985           82 TAYYRGAMGILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES------KRAVPTAKGQELAD----  149 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------~~~~~~~~~~~~~~----  149 (216)
                      ..+++.+|++|+|||+++.  +++..+..|+..+.... .+.|+++|+||+|+.+.      .+.+..+..+.+++    
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence            7899999999999999987  67777777777765443 47899999999998542      22344555666777    


Q ss_pred             HhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          150 EYGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ..++.++++||++ +|++++|+.|++.+
T Consensus       169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            5678999999999 99999999998764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=3.6e-28  Score=190.47  Aligned_cols=164  Identities=30%  Similarity=0.577  Sum_probs=142.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+++|.+|+|||||+++|++..+...+.++... .....+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            34589999999999999999999998887776666653 34556778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEe
Q 027985           93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.           ...+..+++..+++..++ .++++|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999987 68777776654 7899999999998543           256778889999999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (216)
                      |++|.|++++|++|.+.+.
T Consensus       311 a~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999998875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=5.7e-30  Score=186.00  Aligned_cols=159  Identities=21%  Similarity=0.385  Sum_probs=119.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+.. +.++.+  .....+...+  +.+.|||+||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3457999999999999999999999887653 344444  4445556655  7899999999999998898999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCC
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFN  165 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  165 (216)
                      |+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.   ...+++.....     ..++.++++||++|.|
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  177 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTG  177 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence            99999999999999999888775532 347899999999999542   22222222111     1235699999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIK  178 (216)
Q Consensus       166 i~~l~~~l~~~~~  178 (216)
                      ++++|++|.+.+.
T Consensus       178 i~~l~~~l~~~i~  190 (192)
T 2b6h_A          178 LYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=1.3e-28  Score=177.29  Aligned_cols=160  Identities=22%  Similarity=0.390  Sum_probs=124.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      +...++|+++|++|+|||||+++|.+..+. .+.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            356799999999999999999999987652 3344444  3444566665  6899999999999988889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCC
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFN  165 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  165 (216)
                      ++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+..   ..+++.....     ..++.++++||++|+|
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  164 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence            9999999999999999888777543 23478999999999996522   2223222211     1235799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~~~~  179 (216)
                      ++++|++|.+.+.+
T Consensus       165 i~~l~~~l~~~~~~  178 (181)
T 1fzq_A          165 VQDGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=1.4e-29  Score=183.38  Aligned_cols=160  Identities=19%  Similarity=0.341  Sum_probs=126.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+.. +.++.+  .....+..++  +.+.+||+||++.+...+..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998877643 344444  3444556665  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHhCCcEEEEecCCCCCH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i  166 (216)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+..   ..+++....     ...++.++++||++++|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL  171 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence            9999999999999988887775532 3478999999999995522   222222211     122457999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (216)
                      +++|++|.+.+.++
T Consensus       172 ~~l~~~l~~~i~~~  185 (189)
T 2x77_A          172 VEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=3.1e-31  Score=194.43  Aligned_cols=164  Identities=32%  Similarity=0.604  Sum_probs=135.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.... ....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            3567999999999999999999999888876666665433 344556667778899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEE
Q 027985           92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET  158 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~  158 (216)
                      |+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+..           ..+..+++..+++..++ .++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999999987 77777766544 68999999999996532           14556677778888887 89999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ||++|+|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999988765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.7e-29  Score=182.26  Aligned_cols=163  Identities=25%  Similarity=0.437  Sum_probs=119.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeeEEEEEEEEE---CCeEEEEEEEeCCCcccccccccccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .+||+|+|++|+|||||+++|++.  .+...+.++.+.++....+..   ++..+.+.+||++|++.+..++..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999985  455556677766665554443   234578999999999998888888999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHhCCc----EEEEecC
Q 027985           90 GILLVYDVTDE-SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYGIK----FFETSAK  161 (216)
Q Consensus        90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~  161 (216)
                      ++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+. ..+.   .+..+.+++..++.    ++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999987 57889999998887654 36899999999998542 1111   23344555556765    9999999


Q ss_pred             CCC-CHHHHHHHHHHHHHH
Q 027985          162 TNF-NVEQVFFSIAREIKQ  179 (216)
Q Consensus       162 ~~~-~i~~l~~~l~~~~~~  179 (216)
                      ++. +++++++.|.+.+.+
T Consensus       160 ~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          160 EESDALAKLRKTIINESLN  178 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHC
T ss_pred             cCchhHHHHHHHHHHHHhc
Confidence            997 999999998887753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=1.2e-27  Score=178.35  Aligned_cols=168  Identities=21%  Similarity=0.178  Sum_probs=120.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------cccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITT   82 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~   82 (216)
                      ....++|+|+|.+|+|||||+++|++..+.....+..+.+.....+..++  +.+.||||||+....         ..+.
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            35679999999999999999999999887544445555555555556665  689999999983211         1122


Q ss_pred             cccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHHhC--CcE
Q 027985           83 AYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA---KGQELADEYG--IKF  155 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~--~~~  155 (216)
                      .++..+|++|+|||++++.++.  ....|+..+.... .+.|+++|+||+|+.+. ..+..+   ..+.++...+  +.+
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceE
Confidence            3467889999999999987654  2234555554432 36899999999999652 334433   4566677776  799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          156 FETSAKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      +++||++|+|++++|++|.+.+.+...+
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998876554

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=3e-29  Score=189.84  Aligned_cols=172  Identities=25%  Similarity=0.357  Sum_probs=125.1

Q ss_pred             CccccCCCCCeeeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCccccce-eeEEEEEE--------------
Q 027985            4 APARARADYDYLIKLLLIGDS---------GVGKSCLLLRFSD---DSFTTSFITTI-GIDFKIRT--------------   56 (216)
Q Consensus         4 ~~~~~~~~~~~~~~i~v~G~~---------~sGKstli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------   56 (216)
                      .+++.....+..+||+|+|.+         |+|||||+++|++   ..+...+.++. +.++....              
T Consensus         8 ~~~~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~   87 (255)
T 3c5h_A            8 SSGRENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSR   87 (255)
T ss_dssp             ---CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-
T ss_pred             CCccCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccc
Confidence            445566667788999999999         9999999999998   55555555553 22222111              


Q ss_pred             EEECCeEEEEEEEe-----------------------CCCccccccccccccc---------------------cccEEE
Q 027985           57 IELDGKRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGIL   92 (216)
Q Consensus        57 ~~~~~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i   92 (216)
                      ...++..+.+.|||                       ++|++.+..++..+++                     ++|++|
T Consensus        88 ~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi  167 (255)
T 3c5h_A           88 SLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL  167 (255)
T ss_dssp             --------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEE
T ss_pred             cccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEE
Confidence            12455668999999                       6667777777777777                     799999


Q ss_pred             EEEECCCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-hCCcEEEEecCCCCCHHH
Q 027985           93 LVYDVTDE--SSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-YGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        93 ~v~d~~~~--~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~  168 (216)
                      +|||++++  .+++.+..|+..+... ...+.|+++|+||+|+.+. ..+  ++++.++.. .++.++++||++|.|+++
T Consensus       168 lV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~e  244 (255)
T 3c5h_A          168 LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYI--RDAHTFALSKKNLQVVETSARSNVNVDL  244 (255)
T ss_dssp             EEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHH
T ss_pred             EEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHH
Confidence            99999998  9999999999888765 3347899999999998542 222  466667765 378999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          169 VFFSIAREIK  178 (216)
Q Consensus       169 l~~~l~~~~~  178 (216)
                      +|++|.+.+.
T Consensus       245 lf~~l~~~l~  254 (255)
T 3c5h_A          245 AFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=4.9e-28  Score=173.36  Aligned_cols=161  Identities=21%  Similarity=0.203  Sum_probs=121.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++  ..+.|||+||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            34578999999999999999999999888777766666666666677777  4688999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-------C--CcEEEEecCC
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-------G--IKFFETSAKT  162 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~  162 (216)
                      |+|+|++++...... .++..+   ...+.|+++|+||+|+.+.    ..+.........       +  +.++++||++
T Consensus        83 i~v~d~~~~~~~~~~-~~l~~~---~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV-EAINHA---KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKT  154 (178)
T ss_dssp             EEEEETTCCCCHHHH-HHHHHH---GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSS
T ss_pred             EEEEECCCCCcHHHH-HHHHHH---HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecCC
Confidence            999999884322221 112222   2237899999999998652    223333222222       1  4799999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q 027985          163 NFNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~~  182 (216)
                      |+|++++|++|.+.+.....
T Consensus       155 ~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          155 KEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHhhhhhcc
Confidence            99999999999988765443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=6.2e-28  Score=171.11  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=115.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR-   86 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-   86 (216)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++  ..+.+|||||+..+..      +...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            358999999999999999999998877666666666666666677776  5899999999877642      2344554 


Q ss_pred             -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           87 -GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                       .+|++++|+|+++.+.   ...|+..+...   +.|+++|+||+|+.+. ..+.. +.+.+++..++.++++||++|+|
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~SA~~~~~  151 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKS-LGIEI-DVDKLEKILGVKVVPLSAAKKMG  151 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHH-TTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccc-cChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence             7999999999987543   34466666542   6899999999998532 22222 36778888899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREI  177 (216)
Q Consensus       166 i~~l~~~l~~~~  177 (216)
                      ++++|++|.+.+
T Consensus       152 v~~l~~~l~~~~  163 (165)
T 2wji_A          152 IEELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=3.1e-28  Score=179.60  Aligned_cols=162  Identities=15%  Similarity=0.238  Sum_probs=112.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAM   89 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d   89 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++ +.+..  .+.+++. .+.+.||||||++.+.. ++..+++.+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            345799999999999999999999998887666543 33333  3556543 47899999999998877 7888899999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHH-HHh--cCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHH-----------------
Q 027985           90 GILLVYDVTDES-SFNNIRNWMRNI-DQH--AADNVNKILVGNKADMDESKRA-VPTAKGQEL-----------------  147 (216)
Q Consensus        90 ~~i~v~d~~~~~-s~~~~~~~~~~l-~~~--~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~-----------------  147 (216)
                      ++|+|||+++.. ++..+..++..+ ...  ...+.|+++|+||+|+.+.... ...+.+...                 
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999853 455555544433 321  2346899999999999653211 001111111                 


Q ss_pred             ---------------HH-Hh--CCcEEEEecCCC------CCHHHHHHHHHHH
Q 027985          148 ---------------AD-EY--GIKFFETSAKTN------FNVEQVFFSIARE  176 (216)
Q Consensus       148 ---------------~~-~~--~~~~~~~Sa~~~------~~i~~l~~~l~~~  176 (216)
                                     +. ..  ++.|++|||++|      .||+++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                           11 11  567999999999      9999999999865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=4.4e-28  Score=189.59  Aligned_cols=159  Identities=20%  Similarity=0.392  Sum_probs=119.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+... .++.+  .....+...+  +.+.||||||++.+..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3468999999999999999999998887443 34444  3344455555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNV  166 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  166 (216)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+.+..   ..+.+.....     ..++.++++||++|.||
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi  314 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGL  314 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence            9999999999999988877765432 3478999999999996522   2222222211     12346999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          167 EQVFFSIAREIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~~~~  179 (216)
                      +++|++|.+.+.+
T Consensus       315 ~el~~~l~~~l~~  327 (329)
T 3o47_A          315 YEGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=6.2e-27  Score=181.53  Aligned_cols=162  Identities=21%  Similarity=0.311  Sum_probs=124.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRG   87 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~   87 (216)
                      ..+||+++|.+|+|||||+++|++.... ....+..|.+.....+.+++ .+.+.|||+||++.+     ...+..+++.
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            3589999999999999999999887332 12233333444444555544 379999999999887     6778888999


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCC-CC----CCHHHHHHHHHHhC---CcEEE
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESK-RA----VPTAKGQELADEYG---IKFFE  157 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~-~~----~~~~~~~~~~~~~~---~~~~~  157 (216)
                      +|++|+|||++++++++.+..|...+....  ..+.|+++|+||+|+.+.. +.    +..++++.+++.++   +.+++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~  160 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP  160 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999999999999999999877755543321  3479999999999986421 22    45577888888887   79999


Q ss_pred             EecCCCCCHHHHHHHHHHHH
Q 027985          158 TSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      +||++ .++.++|..+++.+
T Consensus       161 tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          161 TSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             CCTTS-SHHHHHHHHHHHTT
T ss_pred             eeecC-ChHHHHHHHHHHHH
Confidence            99999 89999998877654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.1e-26  Score=167.79  Aligned_cols=158  Identities=20%  Similarity=0.254  Sum_probs=124.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR   86 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~   86 (216)
                      +..++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++  ..+.+|||||+..+.      .++..+++
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            3568999999999999999999998776666667777777777777776  689999999987764      23444554


Q ss_pred             --cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           87 --GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        87 --~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                        .++++++|+|..+   ++....|+..+..   .+.|+++|+||+|+.+.. .+. ...+.+++..++.++++||++++
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSL-GIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccc-cch-HHHHHHHHHhCCCeEEEEecCCC
Confidence              4899999999965   4555666666654   368999999999985422 222 35677888889999999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIKQR  180 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (216)
                      |++++|++|.+.+.+.
T Consensus       155 ~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          155 GIEELKKAISIAVKDK  170 (188)
T ss_dssp             SHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999887543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=4.8e-27  Score=167.65  Aligned_cols=154  Identities=21%  Similarity=0.230  Sum_probs=115.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   84 (216)
                      ..++|+|+|.+|+|||||+++|++.... ....++.+.++....+.+++  ..+.+|||||.......        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3579999999999999999999987642 33445556666677778887  46899999997643211        1135


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++.+|++++|+|++++.++.. ..|+..+......+.|+++|+||+|+.+....        ++...+..++++||++|+
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~  151 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGE  151 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCC
Confidence            789999999999998877653 46777776665557899999999998542211        112245689999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIK  178 (216)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (216)
                      |++++|++|.+.+.
T Consensus       152 gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          152 GVDVLRNHLKQSMG  165 (172)
T ss_dssp             THHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999987764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=3.8e-27  Score=170.41  Aligned_cols=156  Identities=24%  Similarity=0.304  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY   84 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   84 (216)
                      ++|+|+|.+|+|||||+++|++..+...+.++.+....  .+.+.    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999887777776654433  33333    589999999           55566666667


Q ss_pred             ccc-ccEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC
Q 027985           85 YRG-AMGILLVYDVTDESSFNNI-RNWMRN--------I-DQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI  153 (216)
Q Consensus        85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (216)
                      ++. ++++++|+++.+..++..+ ..|...        + ......+.|+++|+||+|+.+..    .+..+.+++.++.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~  151 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence            776 7766666666666777665 445432        1 22223478999999999986522    5667888888886


Q ss_pred             c-------EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          154 K-------FFETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       154 ~-------~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      .       ++++||++|+|++++|++|.+.+.+..
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            4       799999999999999999999886543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=2.1e-26  Score=174.24  Aligned_cols=157  Identities=18%  Similarity=0.170  Sum_probs=122.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc------cccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------TAYY   85 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~   85 (216)
                      ....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+...+  ..+.|||+||+..+...+      ..++
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            34679999999999999999999999877666667777777766777666  689999999987765432      3444


Q ss_pred             --ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985           86 --RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN  163 (216)
Q Consensus        86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                        ..+|++++|+|+++.+...   .|+..+..   .+.|+++|+||+|+.+.. .+. .+...+++.++++++++||++|
T Consensus        80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~-~i~-~~~~~l~~~lg~~vi~~SA~~g  151 (258)
T 3a1s_A           80 LKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKT-GMK-IDRYELQKHLGIPVVFTSSVTG  151 (258)
T ss_dssp             HHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-BCHHHHHHHHCSCEEECCTTTC
T ss_pred             hhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCcc-chH-HHHHHHHHHcCCCEEEEEeeCC
Confidence              5899999999999865433   34444443   378999999999985422 222 2467788899999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIK  178 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~  178 (216)
                      .|++++|++|.+.+.
T Consensus       152 ~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          152 EGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhh
Confidence            999999999988653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=2.4e-26  Score=161.85  Aligned_cols=150  Identities=20%  Similarity=0.183  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRG   87 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   87 (216)
                      .+|+|+|.+|+|||||+++|.+..+. ....++.+.+.....+..++  ..+.|||+||....       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988753 34445555566666777777  47899999998762       3344567889


Q ss_pred             ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985           88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV  166 (216)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (216)
                      +|++++|+|++++.+...  .++..+...  .+.|+++|+||+|+.+..     +++..++ ..++ .++++||++|.|+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~~~~~~~~~~Sa~~~~gv  149 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE-----LYLGPLY-GLGFGDPIPTSSEHARGL  149 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG-----GGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch-----HhHHHHH-hCCCCCeEEEecccCCCh
Confidence            999999999987533322  222222222  268999999999996531     2333444 5666 8999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          167 EQVFFSIAREI  177 (216)
Q Consensus       167 ~~l~~~l~~~~  177 (216)
                      +++|++|.+.+
T Consensus       150 ~~l~~~l~~~l  160 (161)
T 2dyk_A          150 EELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=9.4e-27  Score=169.13  Aligned_cols=159  Identities=16%  Similarity=0.185  Sum_probs=106.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   80 (216)
                      .....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+||+||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            455789999999999999999999998875444444433333334444554   699999999          5566666


Q ss_pred             cccccccc---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH--HHHHH-HHHHhCCc
Q 027985           81 TTAYYRGA---MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT--AKGQE-LADEYGIK  154 (216)
Q Consensus        81 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~-~~~~~~~~  154 (216)
                      +..+++.+   |++++|+|++++.+..... ++..+..   .+.|+++|+||+|+.+.. .+..  +.+.. +....++.
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKG-KWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGG-GHHHHHHHHHHHHTCCTTSE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChH-HHHHHHHHHHHHHcccCCCc
Confidence            66777666   9999999999876665532 2222322   368999999999986522 1111  22222 22223578


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 027985          155 FFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ++++||++|+|++++|++|.+.+
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEccCCCCHHHHHHHHHHHh
Confidence            99999999999999999998776

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=1.6e-26  Score=174.60  Aligned_cols=151  Identities=16%  Similarity=0.144  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   85 (216)
                      .+|+++|.+|+|||||+|+|++........++.+.+.....+.+++  ..+.|||+||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999999877667778888888888888887  4899999999876653          344455


Q ss_pred             --ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985           86 --RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN  163 (216)
Q Consensus        86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                        +.+|++|+|+|+++.+....+..+   +.   ..+.|+++|+||+|+.+...  .......+.+.++++++++||++|
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~--~~~~~~~l~~~lg~~vi~~SA~~g  151 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRG--ISIDTEKLESLLGCSVIPIQAHKN  151 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTT--CEECHHHHHHHHCSCEEECBGGGT
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCC--cHHHHHHHHHHcCCCEEEEECCCC
Confidence              789999999999886554443332   22   23789999999999854221  122355677888999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIARE  176 (216)
Q Consensus       164 ~~i~~l~~~l~~~  176 (216)
                      .|++++|++|.+.
T Consensus       152 ~gi~el~~~i~~~  164 (256)
T 3iby_A          152 IGIPALQQSLLHC  164 (256)
T ss_dssp             BSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=3.6e-25  Score=171.62  Aligned_cols=162  Identities=18%  Similarity=0.101  Sum_probs=126.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccc----------
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFR----------   78 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~----------   78 (216)
                      .....-.|+++|.+|+|||||+|+|++..+.. ...+..+..........+ +  .++.||||||+....          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence            45567889999999999999999999988753 344445545555555555 4  689999999986543          


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEE
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFF  156 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~  156 (216)
                      ..+..+++.+|++++|+|++++.+......|+..+...   +.|+++|+||+|+.. ......+....+.+..+  ..++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEE
Confidence            44556788999999999999888888777777766653   689999999999863 23445666777777775  6899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ++||++|.|++++|++|.+.+.
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCc
Confidence            9999999999999999988774

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=4.4e-26  Score=165.38  Aligned_cols=160  Identities=20%  Similarity=0.247  Sum_probs=110.4

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRT   79 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~   79 (216)
                      ......++|+|+|.+|+|||||+++|++..... ..++.+.+........+.   .+.+||+||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence            345677899999999999999999999887432 222222223333333443   588999999          555666


Q ss_pred             ccccccccc---cEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHhC-
Q 027985           80 ITTAYYRGA---MGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG-  152 (216)
Q Consensus        80 ~~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~-  152 (216)
                      ++..+++.+   |++++|+|+.+.....  .+..|+   ...   +.|+++|+||+|+.+.. .....+.++.++...+ 
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~---~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM---KSL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HHT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHH---HHc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            666666655   9999999998753333  233332   222   68999999999986422 2233344555555534 


Q ss_pred             CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          153 IKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      +.++++||++|+|++++|++|.+.+.+
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            699999999999999999999988753

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=2.7e-26  Score=175.23  Aligned_cols=155  Identities=15%  Similarity=0.163  Sum_probs=119.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTA   83 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~   83 (216)
                      ..++|+|+|.+|+|||||+|+|++........++.+.+.....+...+  ..+.||||||+..+...          +..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            358999999999999999999999887667778888788777787776  47889999998776521          112


Q ss_pred             c--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985           84 Y--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus        84 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      +  .+.+|++|+|+|+++.+....+..   .+...   +.|+++|+||+|+.+...  .......+.+.++++++++||+
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~---~l~~~---~~p~ivv~NK~Dl~~~~~--~~~~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTL---QLLEL---GIPCIVALNMLDIAEKQN--IRIEIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHH---HHHHH---TCCEEEEEECHHHHHHTT--EEECHHHHHHHHTSCEEECCCG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHH---HHHhc---CCCEEEEEECccchhhhh--HHHHHHHHHHhcCCCEEEEEcC
Confidence            2  268999999999988655444333   33333   689999999999854221  1223567788889999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIK  178 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (216)
                      +|.|++++|++|.+.+.
T Consensus       152 ~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GGHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999876653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=2.6e-26  Score=190.56  Aligned_cols=164  Identities=24%  Similarity=0.316  Sum_probs=121.8

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEE------EEEE--CCeEEEEEEEeCCCccccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIR------TIEL--DGKRIKLQIWDTAGQERFRTITT   82 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~i~D~~G~~~~~~~~~   82 (216)
                      .....+||+++|.+|+|||||+++|++..+...+.++.+.++...      .+.+  ++..+.+.|||+||++.+..++.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            456789999999999999999999999988777777776555533      1122  22347899999999999999999


Q ss_pred             cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985           83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      .+++.+|++|+|+|+++.   +.+..|+..+..+.. +.|+++|+||+|+.+ ...+..+.++.++...++.++++||++
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~  191 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKN  191 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCc
Confidence            999999999999999765   455678888877654 689999999999965 455667788888888889999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~~  179 (216)
                      |.|+++++++|.+.+.+
T Consensus       192 g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          192 GDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             ---CTTHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHhc
Confidence            99999999999988754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=6.4e-26  Score=172.58  Aligned_cols=153  Identities=19%  Similarity=0.203  Sum_probs=114.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-   86 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   86 (216)
                      +.++|+++|++|+|||||+++|++........++.+.+.....+  .. ...+.|||+||+..+.      .++..++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            45899999999999999999999876555555666555444333  32 3589999999988765      33444554 


Q ss_pred             -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           87 -GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                       .+|++++|+|+++.+..   ..|...+..   .+.|+++|+||+|+.+.. .+. .....+++.++++++++||++|.|
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~-~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQ-GKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcC-CcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence             69999999999876543   344444444   378999999999985422 222 356778888899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREI  177 (216)
Q Consensus       166 i~~l~~~l~~~~  177 (216)
                      ++++|++|.+.+
T Consensus       151 i~el~~~i~~~~  162 (272)
T 3b1v_A          151 VDQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH
Confidence            999999997754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=6.4e-27  Score=180.23  Aligned_cols=158  Identities=18%  Similarity=0.245  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccccE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG   90 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   90 (216)
                      ||+++|..|+|||||++++.+.....   ...+|.+.++.  .+  + ..++++||||+|++++..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~--~v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE--HF--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE--EE--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE--EE--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887664432   24555554443  22  2 237899999999999864   35788999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHHHH----hCCcEEEE
Q 027985           91 ILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK------RAVPTAKGQELADE----YGIKFFET  158 (216)
Q Consensus        91 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~----~~~~~~~~  158 (216)
                      +|+|||+++.  +....+.+|+..+.... .+.|+++|+||+|+.+..      +.+..++++.+++.    .++.+|++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  33344444455554443 479999999999996532      34556667777775    57899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHH
Q 027985          159 SAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ||++ .+|.++|..+++.+.++.
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhH
Confidence            9998 589999999988765443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=4.3e-25  Score=168.48  Aligned_cols=156  Identities=21%  Similarity=0.167  Sum_probs=121.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--   85 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   85 (216)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++  ..+.|||+||+..+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999999887667778888888888888877  4699999999877655      344444  


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                      ..+|++++|+|+++.+   ....|+..+....  ..|+++|+||+|+.+... ... ....+.+.++++++++||++|.|
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~-~~~-~~~~l~~~lg~~~~~~Sa~~g~g  152 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKG-AKI-DIKKMRKELGVPVIPTNAKKGEG  152 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHT-CCC-CHHHHHHHHSSCEEECBGGGTBT
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccc-cHH-HHHHHHHHcCCcEEEEEeCCCCC
Confidence            6799999999998753   2223333343331  289999999999853211 111 26778888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIK  178 (216)
Q Consensus       166 i~~l~~~l~~~~~  178 (216)
                      ++++|+++.+.+.
T Consensus       153 i~~l~~~i~~~~~  165 (271)
T 3k53_A          153 VEELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=6.5e-24  Score=172.74  Aligned_cols=157  Identities=19%  Similarity=0.152  Sum_probs=99.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   84 (216)
                      ..++|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++  +.+.||||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            458999999999999999999998754 345566777777777788887  689999999987655333        346


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++.+|++++|+|++++.++..+..+...+... . +.|+++|+||+|+.+...    ...+.+.+.....++++||++|+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~~~----~~~~~l~~~~~~~~i~vSAktg~  383 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAANAD----ALIRAIADGTGTEVIGISALNGD  383 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTTTH----HHHHHHHHHHTSCEEECBTTTTB
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCccc----hhHHHHHhcCCCceEEEEECCCC
Confidence            78999999999999887765433333323222 2 689999999999865221    12233444434789999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIK  178 (216)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (216)
                      |++++|++|.+.+.
T Consensus       384 GI~eL~~~i~~~~~  397 (476)
T 3gee_A          384 GIDTLKQHMGDLVK  397 (476)
T ss_dssp             SHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988775

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.3e-24  Score=176.10  Aligned_cols=162  Identities=17%  Similarity=0.160  Sum_probs=115.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI   80 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~   80 (216)
                      .+..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+..++.  .+.||||||+..          +...
T Consensus       172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  249 (436)
T 2hjg_A          172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  249 (436)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred             cccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHH
Confidence            346799999999999999999999988763 455666777777777788874  699999999732          3222


Q ss_pred             cc-cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH-HHHHHHHH----hCCc
Q 027985           81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA-KGQELADE----YGIK  154 (216)
Q Consensus        81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~----~~~~  154 (216)
                      .. .+++.+|++++|+|++++.+.++. .|+..+..   .+.|+++|+||+|+.+.. ....+ ..+.+.+.    .+++
T Consensus       250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~l~~~~~~~  324 (436)
T 2hjg_A          250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLDYAP  324 (436)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCC-TTHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcc-hHHHHHHHHHHHHhcccCCCCC
Confidence            22 367889999999999998777765 46555544   368999999999996532 22222 22222232    3579


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          155 FFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ++++||++|.|++++|+.+.+.+...
T Consensus       325 ~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          325 ILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999998887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=4.5e-25  Score=163.58  Aligned_cols=165  Identities=12%  Similarity=0.060  Sum_probs=107.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFR   78 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~   78 (216)
                      .....++|+|+|.+|+|||||+++|++...  .....++.+.......+.. .....+.||||||..          .+.
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            345679999999999999999999998863  3333444444433333331 122579999999943          233


Q ss_pred             ccccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHH----
Q 027985           79 TITTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADE----  150 (216)
Q Consensus        79 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~----  150 (216)
                      .....+++.   +|++++|+|+.+..+.. ...++..+..   .+.|+++|+||+|+.+.... ...+.+......    
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            444455554   88899999998753322 2234444443   36899999999998542110 011122222222    


Q ss_pred             ---hCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          151 ---YGIKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       151 ---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                         .++.++++||++|.|++++|++|.+.+...
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence               346899999999999999999999888644

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=2.1e-23  Score=165.01  Aligned_cols=164  Identities=16%  Similarity=0.168  Sum_probs=123.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   83 (216)
                      ...++|+++|.+|+|||||+++|++........+..+.......+...+  ..+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4678999999999999999999998775443444444455555555555  5899999999754211         1113


Q ss_pred             ccccccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985           84 YYRGAMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.+..   ..+....++...+++++++||+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~  318 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE---NIKRLEKFVKEKGLNPIKISAL  318 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH---HHHHHHHHHHHTTCCCEECBTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH---HHHHHHHHHHhcCCCeEEEeCC
Confidence            445699999999998876  67777888888877554 68999999999985421   1244556666778899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q 027985          162 TNFNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~~  182 (216)
                      +|+|+++++++|.+.+.....
T Consensus       319 ~g~gi~~l~~~i~~~l~~~~~  339 (357)
T 2e87_A          319 KGTGIDLVKEEIIKTLRPLAE  339 (357)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHh
Confidence            999999999999998865433

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=7.6e-24  Score=163.45  Aligned_cols=155  Identities=17%  Similarity=0.128  Sum_probs=108.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   83 (216)
                      ....+|+|+|.+|+|||||+|+|++..+.. ...+..+.......+..++  .++.||||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence            345679999999999999999999988743 3344444333333344444  6899999999765        3344456


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-C-CcEEEEec
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-G-IKFFETSA  160 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa  160 (216)
                      +++.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+.+....     +....+.+ + ..++++||
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA  154 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSA  154 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCT
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeC
Confidence            789999999999998764433  3343 3444332 36899999999998542110     22223322 3 47899999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIAREI  177 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~  177 (216)
                      ++|.|+++++++|.+.+
T Consensus       155 ~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          155 LDERQVAELKADLLALM  171 (301)
T ss_dssp             TCHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999988765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.1e-24  Score=161.06  Aligned_cols=144  Identities=17%  Similarity=0.294  Sum_probs=105.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG-   87 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   87 (216)
                      ....++|+|+|++|+|||||+++|++..+..   .+.++.+.++         ..+.+.+||+||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            4567999999999999999999999887654   2444433222         22579999999999988888888877 


Q ss_pred             ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHHHhCC
Q 027985           88 ---AMGILLVYDVT-DESSFNNIRNWMRNIDQH----AADNVNKILVGNKADMDESKRAVP------TAKGQELADEYGI  153 (216)
Q Consensus        88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~~~  153 (216)
                         +|++|+|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.+.. .+.      .+++..++...++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhc
Confidence               89999999999 888899888888777654    33579999999999996532 222      3446666677778


Q ss_pred             cEEEEecCCCCC
Q 027985          154 KFFETSAKTNFN  165 (216)
Q Consensus       154 ~~~~~Sa~~~~~  165 (216)
                      .++++||++|.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            899999998865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=1.1e-23  Score=171.61  Aligned_cols=163  Identities=17%  Similarity=0.154  Sum_probs=117.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI   80 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   80 (216)
                      ....++|+++|.+++|||||+++|++.. ......++.+.+.....+..++.  .+.||||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            4567999999999999999999999765 33455666666666667777774  899999999          4545444


Q ss_pred             cc-cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-----CCc
Q 027985           81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-----GIK  154 (216)
Q Consensus        81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~  154 (216)
                      .. .+++.+|++|+|+|+++..... ...|+..+..   .+.|+++|+||+|+.+. .....++....++..     +++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  344 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP  344 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCC
Confidence            33 3678899999999998753322 2344444444   36899999999999652 334445555555544     479


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          155 FFETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ++++||++|.|++++|+++.+.+.++.
T Consensus       345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          345 ILFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            999999999999999999998876554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=2.8e-24  Score=168.11  Aligned_cols=157  Identities=19%  Similarity=0.240  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---cc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYYR---GA   88 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~   88 (216)
                      .+|+|+|.+++|||||+++|++........+..+.......+.+++. ..+.|||+||..+    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36889999999999999999987654333444444555556666643 4799999999543    3334444544   49


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEecC
Q 027985           89 MGILLVYDVTD---ESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSAK  161 (216)
Q Consensus        89 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  161 (216)
                      +++|+|+|+++   ..+++.+..|+..+..+..  ...|+++|+||+|+.+.     .+..+.+.+.+.  ..++++||+
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~  312 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV  312 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECC
Confidence            99999999998   7889999999988887652  47899999999998541     234566666666  689999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIK  178 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (216)
                      +++|+++++++|.+.+.
T Consensus       313 tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          313 TREGLRELLFEVANQLE  329 (342)
T ss_dssp             CSSTTHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999988874

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.90  E-value=1.8e-23  Score=170.94  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=115.4

Q ss_pred             cccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCC-------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985            6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus         6 ~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +.+....+..++|+++|..++|||||+++|++..       +..+..++.|.+.....+.+++  ..+.|||+||++.+.
T Consensus        10 ~~~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~   87 (482)
T 1wb1_A           10 EGRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLI   87 (482)
T ss_dssp             ---CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHH
T ss_pred             CcchhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHH
Confidence            4445556778999999999999999999999876       3344455555555555566666  689999999999988


Q ss_pred             cccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHh---
Q 027985           79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEY---  151 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~---  151 (216)
                      ..+...++.+|++|+|+|+++   +++.+.+    ..+...   ++|+++|+||+|+.+.. .....++++.+....   
T Consensus        88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~  160 (482)
T 1wb1_A           88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL  160 (482)
T ss_dssp             HHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred             HHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence            888889999999999999987   4444433    223322   67889999999996421 112234455555554   


Q ss_pred             -CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          152 -GIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       152 -~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                       +++++++||++|+|+++++++|.+.+.
T Consensus       161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          161 KNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             478999999999999999999988775

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1.2e-24  Score=174.47  Aligned_cols=157  Identities=17%  Similarity=0.151  Sum_probs=115.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-------cc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TA   83 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~   83 (216)
                      ....++|+|+|..++|||||+++|++..+. ....++.+.+.....+.+.+. ..+.||||||+..+..+.       ..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            456899999999999999999999988763 445566666777777777764 389999999988766543       33


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN  163 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      +++.+|++|+|+|+...+   ....|+..+...   +.|+++|+||+|+.+....   +..+.+.+.+++.++++||++|
T Consensus       110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECCCC
Confidence            688899999999994332   334566666555   7899999999999653332   5666677777899999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAREIK  178 (216)
Q Consensus       164 ~~i~~l~~~l~~~~~  178 (216)
                      .|++++|++|.+.+.
T Consensus       181 ~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          181 KGFDDIGKTISEILP  195 (423)
T ss_dssp             TSTTTHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999998874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.90  E-value=9.8e-23  Score=160.85  Aligned_cols=164  Identities=16%  Similarity=0.107  Sum_probs=111.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------cccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   84 (216)
                      ....|+|+|.+|+|||||+|+|++........++.|.+.....+.+++  ..+.+|||+|...         +...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            334499999999999999999998877555566666677777888888  4789999999621         22222 24


Q ss_pred             cccccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh---CCcEEEEe
Q 027985           85 YRGAMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY---GIKFFETS  159 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~S  159 (216)
                      +..+|++++|+|++++.  ....+..|...+......+.|+++|+||+|+.+.........+..+....   +..++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            78899999999998876  55566666665655544578999999999985422100012233344554   23689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (216)
                      |++++|+++++++|.+.+...
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhccc
Confidence            999999999999998877643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=2.4e-23  Score=169.48  Aligned_cols=153  Identities=24%  Similarity=0.267  Sum_probs=116.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRTI--------TTAY   84 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~   84 (216)
                      .++|+|+|.+|+|||||+|+|++... .....++++.++....+.+++  ..+.||||||.. .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            48999999999999999999998764 345566677777777888887  579999999987 54321        2346


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++.+|++|+|+|++++.+++... ++..+     .+.|+++|+||+|+.+.   +..+++..+.. .+++++++||++|+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~  390 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGE  390 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence            78899999999999877765532 22222     26899999999999542   33444444432 33689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIKQ  179 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (216)
                      |+++++++|.+.+..
T Consensus       391 Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          391 GLEKLEESIYRETQE  405 (482)
T ss_dssp             CHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=4.6e-22  Score=159.64  Aligned_cols=165  Identities=15%  Similarity=0.128  Sum_probs=114.5

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEE-------EE---------EE---CCeEEEEEEEeC
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIR-------TI---------EL---DGKRIKLQIWDT   71 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~   71 (216)
                      .....++|+++|.+++|||||+++|++............ .....       .+         ..   ......+.||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            455679999999999999999999998654331110000 00000       00         00   112268999999


Q ss_pred             CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHH
Q 027985           72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADE  150 (216)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~  150 (216)
                      ||++.+...+...++.+|++|+|+|++++.+.....+++..+....  ..|+++|+||+|+.+.... ...+++..+...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999888899999999999999998766777777776665542  2589999999998652210 111222222222


Q ss_pred             h---CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          151 Y---GIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       151 ~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .   +++++++||++|+|+++++++|.+.+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            2   468999999999999999999887653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.4e-22  Score=164.32  Aligned_cols=151  Identities=24%  Similarity=0.320  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   85 (216)
                      .+|+|+|.||+|||||+|+|++.... ....++.|.+.....+.+++.  .+.||||||.+..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987753 456677777777788888884  6899999996542         23345678


Q ss_pred             ccccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHHhCC-cEEEEecC
Q 027985           86 RGAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG-QELADEYGI-KFFETSAK  161 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~  161 (216)
                      +++|++++|+|+.++.+..+  +..|+   ...   +.|+++|+||+|+...   . .... ..+. ..++ .++++||+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~---~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~  148 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFL---RKS---TVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE  148 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHH---HHH---TCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence            99999999999987544332  22332   222   6899999999997421   1 1222 3343 4566 78999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (216)
                      +|.|+++++++|.+.+.+
T Consensus       149 ~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          149 HNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999988864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=4.7e-22  Score=159.83  Aligned_cols=161  Identities=16%  Similarity=0.149  Sum_probs=103.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC---CCCccccceeeE--EEEEEEEE-------------C--C----eEEEEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS---FTTSFITTIGID--FKIRTIEL-------------D--G----KRIKLQ   67 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~~~~   67 (216)
                      +...++|+++|..++|||||+++|++..   +..+..++.|.+  +....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3456999999999999999999998543   333444433332  22222211             1  1    136899


Q ss_pred             EEeCCCccccccccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHH
Q 027985           68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTA  142 (216)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~  142 (216)
                      |||+||++.+...+...+..+|++|+|+|++++    ++.+.+.    .+... . ..|+++|+||+|+.+... ....+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-G-IDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-T-CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-C-CCeEEEEEEccCCCCHHHHHHHHH
Confidence            999999999888777888899999999999853    4444432    22222 1 357999999999976432 22345


Q ss_pred             HHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          143 KGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       143 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      +++.+.+.   .+++++++||++|+|+++|+++|.+.+.
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            56666654   2578999999999999999999887553

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.88  E-value=2e-22  Score=163.18  Aligned_cols=156  Identities=17%  Similarity=0.105  Sum_probs=109.4

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCccccceeeEEEEEEEEE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIEL   59 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   59 (216)
                      .....++|+++|.+++|||||+++|+...                               ...+..++.+.+.....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            44567999999999999999999995431                               11223345566666666666


Q ss_pred             CCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 027985           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWMRNIDQHAADNVN-KILVGNKADM  132 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~  132 (216)
                      ++  ..+.||||||++.+...+...++.+|++|+|+|+++...   ++   ...+.+..+..   .+.| +++|+||+|+
T Consensus        93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD  167 (439)
T ss_pred             CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence            65  589999999999998888889999999999999987532   11   12222222222   2566 8999999998


Q ss_pred             CCCC-----CCCCHHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Q 027985          133 DESK-----RAVPTAKGQELADEYG------IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       133 ~~~~-----~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ....     .....+++..+.+..+      ++++++||++|+|++++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5321     1112334445555554      4699999999999999765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=2.8e-22  Score=161.29  Aligned_cols=164  Identities=16%  Similarity=0.180  Sum_probs=111.6

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCC---CCCccccceeeEEEEEEEEE---------------C--C----eEE
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDS---FTTSFITTIGIDFKIRTIEL---------------D--G----KRI   64 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~---------------~--~----~~~   64 (216)
                      +..+...++|+++|..++|||||+++|++..   +..+..++.|.+.......+               +  +    ...
T Consensus         4 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~   83 (410)
T 1kk1_A            4 RKSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR   83 (410)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred             cccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence            3456778999999999999999999998543   33344443333322222221               1  1    126


Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CC
Q 027985           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AV  139 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~  139 (216)
                      .+.|||+||++.+.......+..+|++|+|+|+++.    ++.+.+.    .+....  ..|+++|+||+|+.+... ..
T Consensus        84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~  157 (410)
T 1kk1_A           84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALE  157 (410)
T ss_dssp             EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHH
T ss_pred             EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHH
Confidence            899999999998887777788899999999999853    3444432    222221  357899999999865221 11


Q ss_pred             CHHHHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          140 PTAKGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       140 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ..++++.+.+.   .+++++++||++|+|+++|+++|.+.+.
T Consensus       158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            22344445443   3578999999999999999999887553

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=3.9e-22  Score=165.96  Aligned_cols=158  Identities=25%  Similarity=0.316  Sum_probs=110.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------ccccceeeEEEEEEEEE---CCeEEEEEEEeCCCcc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   75 (216)
                      +..+|+|+|..++|||||+++|+...  +..             +...+.+.......+.+   ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            56799999999999999999997532  110             11122222222223333   4556899999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC--
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--  153 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  153 (216)
                      .+...+...++.+|++|+|+|+++.........|+....    .++|+++|+||+|+.+..   .....+.+.+.++.  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCCc
Confidence            999889999999999999999998766666666655443    268999999999996532   23345556666665  


Q ss_pred             -cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          154 -KFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       154 -~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                       .++++||++|.|+++++++|.+.+.
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCC
Confidence             4999999999999999999987763

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.88  E-value=2.3e-22  Score=157.85  Aligned_cols=128  Identities=18%  Similarity=0.191  Sum_probs=103.5

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCC
Q 027985           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADN  120 (216)
Q Consensus        52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~  120 (216)
                      .....+.+++  +.+.|||++|++.+...|..++++++++|+|||+++          .+++.....|+..+... ...+
T Consensus       183 i~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~  260 (353)
T 1cip_A          183 IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD  260 (353)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred             eEEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence            3344556655  789999999999999999999999999999999998          46788888888887653 2347


Q ss_pred             CcEEEEEeCCCCCCCC--------------CCCCHHHHHHHHHH-----------hCCcEEEEecCCCCCHHHHHHHHHH
Q 027985          121 VNKILVGNKADMDESK--------------RAVPTAKGQELADE-----------YGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       121 ~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      .|+++|+||+|+.+..              ..+..+++..++..           .++.+++|||+++.||+++|+++.+
T Consensus       261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            9999999999984211              13567788877762           4568999999999999999999999


Q ss_pred             HHHHHH
Q 027985          176 EIKQRL  181 (216)
Q Consensus       176 ~~~~~~  181 (216)
                      .+.+..
T Consensus       341 ~i~~~~  346 (353)
T 1cip_A          341 VIIKNN  346 (353)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            887554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=1e-22  Score=165.18  Aligned_cols=152  Identities=20%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   84 (216)
                      ..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.||||||...+...+        ...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4689999999999999999999986542 44456666666666677777  578999999976543322        236


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++.+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.+.... .  ..+.+.  .+..++++||++|+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~-~--~~~~~~--~~~~~i~iSAktg~  369 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLI-T--SLEYPE--NITQIVHTAAAQKQ  369 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGS-T--TCCCCT--TCCCEEEEBTTTTB
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhh-H--HHHHhc--cCCcEEEEECCCCC
Confidence            788999999999998655544 33444332     3699999999999653221 1  111111  34689999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIK  178 (216)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (216)
                      |+++++++|.+.+.
T Consensus       370 Gi~eL~~~i~~~~~  383 (462)
T 3geh_A          370 GIDSLETAILEIVQ  383 (462)
T ss_dssp             SHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988775

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=4.5e-22  Score=150.87  Aligned_cols=164  Identities=15%  Similarity=0.169  Sum_probs=108.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccc-eeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------   81 (216)
                      ....++|+|+|.+|+|||||+++|++.. +.....++ .+.......+..++  ..+.||||||+..+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            4457999999999999999999999877 44444444 45555555666766  589999999976543222        


Q ss_pred             ---ccccccccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCCCCCH-------HHHHHHHH
Q 027985           82 ---TAYYRGAMGILLVYDVTDESSF-NNIRNWMRNIDQHAADNVNKILVGN-KADMDESKRAVPT-------AKGQELAD  149 (216)
Q Consensus        82 ---~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~n-K~D~~~~~~~~~~-------~~~~~~~~  149 (216)
                         ...++.+|++|+|+|+++.... ..+..++..+..... ..|+++|+| |+|+...  .+..       ..++.+..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHH
Confidence               2256889999999999862221 122223222211111 346666666 9998642  1111       23444666


Q ss_pred             HhCCc---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          150 EYGIK---F--FETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       150 ~~~~~---~--~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ..+..   +  +++||+++.|++++|++|.+.+...
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            66543   2  7899999999999999999988753

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=8.4e-22  Score=163.70  Aligned_cols=159  Identities=20%  Similarity=0.301  Sum_probs=112.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-------------ccccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   74 (216)
                      +...+|+|+|..++|||||+++|+..  .+..             +...+.+.......+.+   ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            45789999999999999999999752  1110             01111222111122222   455689999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  153 (216)
                      ..+...+...++.+|++|+|+|+++.........|+....    .++|+++|+||+|+.+..   .....+.+.+.++. 
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence            9998888889999999999999998877777766655443    268999999999986532   22334555555565 


Q ss_pred             --cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          154 --KFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       154 --~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                        .++++||++|.|++++|++|.+.+.
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcc
Confidence              4899999999999999999987664

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=5.1e-24  Score=174.89  Aligned_cols=159  Identities=16%  Similarity=0.153  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+++|||||+++|.+..+.....++.+.++....+..++. ..+.||||||++.+..++..+++.+|++|+|
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            578999999999999999999877665555556555554444444322 3799999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHHh--CCcEEEEecCCCCCHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL---ADEY--GIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~l  169 (216)
                      +|+++........ ++..+.   ..+.|+++|+||+|+.+............+   ...+  .++++++||++|.|++++
T Consensus        83 VDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           83 VAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             CBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             EECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            9998854443322 222222   337899999999999654333222333222   1111  247999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          170 FFSIAREIK  178 (216)
Q Consensus       170 ~~~l~~~~~  178 (216)
                      |++|...+.
T Consensus       159 le~I~~l~~  167 (537)
T 3izy_P          159 AEATIALAE  167 (537)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            999987653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=5.9e-21  Score=142.98  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=108.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc--ceeeEEEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------RF   77 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~   77 (216)
                      .....++|+|+|.+|+|||||+++|++..+.....+  +.+.......+.+++  ..+.||||||..           .+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345679999999999999999999999887655544  455556666677777  479999999943           23


Q ss_pred             ccccccccccccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHH
Q 027985           78 RTITTAYYRGAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP------TAKGQELAD  149 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~  149 (216)
                      ...+...++.+|++|+|+|+++...  ...+..+...+....  ..|+++|+||+|+.+.. .+.      .+.++.+.+
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHHH
Confidence            3334445678899999999875332  222222222222221  35899999999985422 111      246778888


Q ss_pred             HhCCcEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 027985          150 EYGIKFFETSAKTN-----FNVEQVFFSIAREIKQ  179 (216)
Q Consensus       150 ~~~~~~~~~Sa~~~-----~~i~~l~~~l~~~~~~  179 (216)
                      ..+..++.++...+     .++.++|+.+...+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888888877644     6788888887776654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=2.9e-21  Score=156.64  Aligned_cols=161  Identities=19%  Similarity=0.170  Sum_probs=107.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------   81 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   81 (216)
                      +..++|+|+|++|+|||||+|+|++... .....++.+.+.....+.+++.  .+.+|||+|........          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            4569999999999999999999998765 2344556666666667788885  68999999975432211          


Q ss_pred             --ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHH----hCCc
Q 027985           82 --TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADE----YGIK  154 (216)
Q Consensus        82 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~  154 (216)
                        ...++.+|++++|+|+.+..+..+. .+...+..   .+.|+++|+||+|+.+.. ....++.. .+...    .+++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFIDYSP  330 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCCCCc
Confidence              1245678999999999876555442 22222332   368999999999986522 22222222 22222    3468


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          155 FFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ++++||++|.|++++|+.+.+.+...
T Consensus       331 ~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          331 LIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999998877654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.87  E-value=1.4e-21  Score=150.91  Aligned_cols=156  Identities=19%  Similarity=0.164  Sum_probs=108.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA   83 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~   83 (216)
                      ...+|+|+|++|+|||||+|+|++..+.. ...+..+.......+..++  .++.+|||||+.         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            34579999999999999999999887632 2233333333333344444  589999999987         23444567


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      .++.+|++++|+|+.+   +.....|+.....  ..+.|+++|+||+|+.. ......+.+..+.+..+. .++++||++
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            7899999999999976   2222233322222  23689999999999854 112223445555555565 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREI  177 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (216)
                      +.|++++++.|...+
T Consensus       159 g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          159 GLNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999988654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=1.3e-22  Score=155.00  Aligned_cols=162  Identities=19%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-cc-------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccc------
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------   77 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------   77 (216)
                      +...++|+|+|.+|+|||||+|+|++..... .+       .++.+.+.....+..++..+.+.||||||....      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            4567999999999999999999988765533 33       455555665555555665579999999996321      


Q ss_pred             -cccc-------cccc-------------ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           78 -RTIT-------TAYY-------------RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        78 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                       ..+.       ..++             ..+|+++++++.........-..++..+..    ++|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence             1111       1112             237789999977652222222233333332    68999999999985311


Q ss_pred             C-CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          137 R-AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       137 ~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      . ......+.......++.++.+|+.+++|+++++++|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1 1112334445556788999999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=1.9e-22  Score=163.43  Aligned_cols=152  Identities=16%  Similarity=0.208  Sum_probs=99.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~   85 (216)
                      ..+|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.||||||++        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987653 34456666666666666655  479999999975        4455566778


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985           86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNF  164 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      +.+|++|+|+|+.++.+..+  .++..+..  ..+.|+++|+||+|+.+.....     ..+. ..+. .++++||++|.
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~~-----~~~~-~lg~~~~~~iSA~~g~  150 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRANI-----YDFY-SLGFGEPYPISGTHGL  150 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----CC-----CSSG-GGSSCCCEECBTTTTB
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhhH-----HHHH-HcCCCCeEEEeCcCCC
Confidence            99999999999987655443  23333222  2378999999999985422111     1122 3454 78999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIK  178 (216)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (216)
                      |++++++++.+.+.
T Consensus       151 gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          151 GLGDLLDAVAEHFK  164 (436)
T ss_dssp             THHHHHHHHHHTGG
T ss_pred             ChHHHHHHHHHhcC
Confidence            99999999988764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.86  E-value=3.1e-21  Score=151.95  Aligned_cols=128  Identities=20%  Similarity=0.198  Sum_probs=95.7

Q ss_pred             EEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCC
Q 027985           53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADNV  121 (216)
Q Consensus        53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~  121 (216)
                      ....+.+++  +.+.|||++|++.+...|..++++++++|+|||+++          .+++.....|+..+... ...+.
T Consensus       192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~  269 (362)
T 1zcb_A          192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV  269 (362)
T ss_dssp             EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred             EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence            334455655  789999999999999999999999999999999998          67899998888888654 23578


Q ss_pred             cEEEEEeCCCCCCCC--------------C-CCCHHHHHHHHH-----------HhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985          122 NKILVGNKADMDESK--------------R-AVPTAKGQELAD-----------EYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       122 p~ivv~nK~D~~~~~--------------~-~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |+++|+||+|+.+..              . ....+++..++.           ..++.++++||++++||+++|+++.+
T Consensus       270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            999999999984211              1 255677776652           34578899999999999999999999


Q ss_pred             HHHHHHh
Q 027985          176 EIKQRLV  182 (216)
Q Consensus       176 ~~~~~~~  182 (216)
                      .+.+...
T Consensus       350 ~i~~~~l  356 (362)
T 1zcb_A          350 TILHDNL  356 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876554

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=1.7e-21  Score=159.62  Aligned_cols=153  Identities=16%  Similarity=0.111  Sum_probs=99.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|.+++|||||+++|+....                               ..+..++.+.+.....+...+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3579999999999999999999975411                               111223334444444444444


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                        ..+.||||||++.+...+...++.+|++|+|+|++++.+...      ..+.+..+.. .. ..|+++|+||+|+.+.
T Consensus       111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~-~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG-IHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT-CCCEEEEEECGGGGTT
T ss_pred             --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC-CCcEEEEEECcCcccc
Confidence              689999999999999889999999999999999998654322      1122222222 21 3569999999998652


Q ss_pred             CCCCC---HHHHHHHHHHhC-----CcEEEEecCCCCCHHHH
Q 027985          136 KRAVP---TAKGQELADEYG-----IKFFETSAKTNFNVEQV  169 (216)
Q Consensus       136 ~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  169 (216)
                      .....   .+++..+....+     +.++++||++|+|++++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            21111   223333444443     57899999999999853

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=1e-21  Score=158.96  Aligned_cols=155  Identities=20%  Similarity=0.140  Sum_probs=105.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC---CCc------------------------------cccceeeEEEEEEEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTS------------------------------FITTIGIDFKIRTIE   58 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~---~~~------------------------------~~~~~~~~~~~~~~~   58 (216)
                      ....++|+++|.+++|||||+++|+....   ...                              ...+.+.+.....+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            45679999999999999999999975431   100                              001222333333344


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      .++  ..+.||||||++.+...+...++.+|++|+|+|+++... ....+++..+... . ..|+++|+||+|+.+....
T Consensus       101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B          101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHH
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHH
Confidence            444  589999999999998888888999999999999987542 2233444444332 1 2368999999999652211


Q ss_pred             ---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985          139 ---VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  171 (216)
                         ...++.+.+++..+     +.++++||++|+|++++++
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence               12344556666666     6799999999999998544

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=3.3e-21  Score=151.25  Aligned_cols=122  Identities=16%  Similarity=0.230  Sum_probs=94.5

Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQHA-ADNVNKILVGNKA  130 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~  130 (216)
                      ..+.+.|||++|++.+...|..++++++++|+|||++          +.+++..+..|+..+.... ..+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7789999999988886542 3578999999999


Q ss_pred             CCCCCCC-CC-------------------CHHHHHHHHHH----------------hCCcEEEEecCCCCCHHHHHHHHH
Q 027985          131 DMDESKR-AV-------------------PTAKGQELADE----------------YGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus       131 D~~~~~~-~~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      |+.+... .+                   ..+++..++..                ..+.++++||++++||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843111 01                   13556666432                123468999999999999999999


Q ss_pred             HHHHHHHhh
Q 027985          175 REIKQRLVE  183 (216)
Q Consensus       175 ~~~~~~~~~  183 (216)
                      +.+.+...+
T Consensus       341 ~~I~~~~l~  349 (354)
T 2xtz_A          341 ETLRRRNLL  349 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988765543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=6.8e-21  Score=147.49  Aligned_cols=128  Identities=20%  Similarity=0.204  Sum_probs=100.9

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027985           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQHA-ADN  120 (216)
Q Consensus        52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~  120 (216)
                      +....+..++  +.+.|||++|++.+...|..++++++++|+|+|++          +.+++.....|+..+.... ..+
T Consensus       157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~  234 (327)
T 3ohm_A          157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  234 (327)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence            4445566665  79999999999999999999999999999999664          5677888878877775532 357


Q ss_pred             CcEEEEEeCCCCCCCC---------------CCCCHHHHHHHHH----------HhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985          121 VNKILVGNKADMDESK---------------RAVPTAKGQELAD----------EYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       121 ~p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      .|+++++||+|+.+..               .....+++..+..          ..++.++++||+++.||+++|..+.+
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            8999999999984311               1356777777743          34467899999999999999999999


Q ss_pred             HHHHHH
Q 027985          176 EIKQRL  181 (216)
Q Consensus       176 ~~~~~~  181 (216)
                      .+.+..
T Consensus       315 ~Il~~~  320 (327)
T 3ohm_A          315 TILQLN  320 (327)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            987654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.4e-21  Score=140.27  Aligned_cols=114  Identities=19%  Similarity=0.351  Sum_probs=87.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG-   87 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   87 (216)
                      ....++|+|+|.+|+|||||+++|++..+..   ...++.+.++       .  .+.+.+||+||+..+...+..+++. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~--~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D--GSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C--CTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c--CCeEEEEECCCCchHHHHHHHHHHhh
Confidence            3567899999999999999999999887644   2222222211       2  2579999999998887777777766 


Q ss_pred             ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 027985           88 ---AMGILLVYDVT-DESSFNNIRNWMRNIDQH----AADNVNKILVGNKADMDE  134 (216)
Q Consensus        88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~  134 (216)
                         +|++|+|||++ +.+++..+..|+..+...    ...+.|+++|+||+|+.+
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence               89999999999 899999988888777554    234799999999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=2.6e-22  Score=162.50  Aligned_cols=154  Identities=18%  Similarity=0.176  Sum_probs=104.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc-----------------------------cccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTS-----------------------------FITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|.+++|||||+++|+..  .+...                             ..++.+.+.....+...+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            35689999999999999999999864  33211                             123334444433444444


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHH-------HHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-------MRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-------~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                        ..+.||||||++.+...+...++.+|++|+|+|+++ .+++.+..|       +..+...  ...|+++|+||+|+.+
T Consensus        84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCC
Confidence              689999999999998888889999999999999998 666644332       2222221  1236899999999965


Q ss_pred             CCC-----CCCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985          135 SKR-----AVPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus       135 ~~~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ...     ....++++.+++..+     +.++++||++|+|+.+++.
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            211     122355666776665     6799999999999986654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=1.3e-21  Score=157.12  Aligned_cols=148  Identities=17%  Similarity=0.137  Sum_probs=103.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCc---------cccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--------SFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ....++|+++|.+++|||||+++|++.        .+...         ...+.+.+.....+...+  ..+.||||||+
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~   85 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGH   85 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCS
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCCh
Confidence            345799999999999999999999863        21111         123334344333333333  58999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHh
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEY  151 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~  151 (216)
                      +.+...+...++.+|++|+|+|+++... ....+++..+...   +.| +++|+||+|+.+...  +...++++.+.+..
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            9988888888999999999999987543 3344555555443   577 889999999864111  11123455666665


Q ss_pred             C-----CcEEEEecCCCCC
Q 027985          152 G-----IKFFETSAKTNFN  165 (216)
Q Consensus       152 ~-----~~~~~~Sa~~~~~  165 (216)
                      +     ++++++||++|.|
T Consensus       162 ~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHH
T ss_pred             cccccCCCEEEccHHHhhh
Confidence            5     6899999999987

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=5.5e-21  Score=157.38  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CC----ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF------------------TT----SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      ....+|+|+|.+++|||||+++|+....                  ..    +..++.+.......+.+.+  +.+.|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            3568999999999999999999962111                  00    0113334444445566666  6899999


Q ss_pred             CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |||+..+...+...++.+|++|+|+|+++........-| ..+..   .++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            999999998899999999999999999986665555444 33332   3689999999999854

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=5.2e-21  Score=153.21  Aligned_cols=157  Identities=18%  Similarity=0.161  Sum_probs=107.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-------CCC---------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS-------FTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+++|.+++|||||+++|++..       +..         +.....+.+.....+..++  ..+.||||||++.+.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV   80 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC--eEEEEEECCChHHHH
Confidence            5899999999999999999998631       110         1123334443333333333  589999999999988


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHhC---
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG---  152 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~---  152 (216)
                      ..+...++.+|++|+|+|+++....+. .+++..+...   ++| +++++||+|+.+...  ....++++.+++..+   
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            888888999999999999988543322 2333333332   678 688999999864211  112245566666665   


Q ss_pred             --CcEEEEecCCCCC----------HHHHHHHHHHHH
Q 027985          153 --IKFFETSAKTNFN----------VEQVFFSIAREI  177 (216)
Q Consensus       153 --~~~~~~Sa~~~~~----------i~~l~~~l~~~~  177 (216)
                        ++++++||++|.|          +.++++.|.+.+
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence              5899999999764          778887776544

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=2.8e-21  Score=152.93  Aligned_cols=147  Identities=11%  Similarity=0.075  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      +|+++|.+++|||||+++|+        ....+.+.....+..++  ..+.||||||++.+.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        33334444444444444  579999999999987777778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCCCC--HHHHHHHHHHhC---CcEEE--EecCC---CC
Q 027985           97 VTDESSFNNIRNWMRNIDQHAADNVNK-ILVGN-KADMDESKRAVP--TAKGQELADEYG---IKFFE--TSAKT---NF  164 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~  164 (216)
                       .+ .......+++..+...   +.|. ++++| |+|+ + .....  .++++.+.+..+   +++++  +||++   ++
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence             43 4445555665555443   5677 88899 9998 4 21111  134455554433   68999  99999   99


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027985          165 NVEQVFFSIAREIKQR  180 (216)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (216)
                      |++++++.|.+.+...
T Consensus       166 gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          166 GVDELKARINEVAEKI  181 (370)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccc
Confidence            9999999999887654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=2.8e-22  Score=163.42  Aligned_cols=156  Identities=17%  Similarity=0.095  Sum_probs=92.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----------------------------ccccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTT-----------------------------SFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|..++|||||+++|+..  .+..                             +...+.|++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45789999999999999999999742  1110                             0112233333333445555


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR  137 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~  137 (216)
                        ..+.||||||++.|...+...++.+|++|+|+|+++..   +|+...++...+......++| +++|+||+|+.+...
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              58999999999999888888999999999999998752   222222222222222223677 899999999854211


Q ss_pred             -----CCCHHHHHHHHHHh-------CCcEEEEecCCCCCHHHHH
Q 027985          138 -----AVPTAKGQELADEY-------GIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus       138 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~  170 (216)
                           .....++..+.+..       ++.++++||++|+|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11223456666665       3569999999999998866

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=4.4e-20  Score=153.75  Aligned_cols=160  Identities=18%  Similarity=0.131  Sum_probs=105.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-----------C-----eEEEEEEEeCCCcccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-----------G-----KRIKLQIWDTAGQERF   77 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~~~i~D~~G~~~~   77 (216)
                      ..++|+|+|.+++|||||+++|++..+........+.+.........           +     ....+.||||||++.+
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            35789999999999999999998754422111111111111111110           0     0125999999999999


Q ss_pred             ccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC------------CHH
Q 027985           78 RTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV------------PTA  142 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~~  142 (216)
                      ..++...++.+|++|+|+|+++   +++++.+.    .+..   .+.|+++++||+|+.+.....            ...
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999998   56655443    2222   378999999999985421100            000


Q ss_pred             ----------HHHHHHHHhC---------------CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          143 ----------KGQELADEYG---------------IKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       143 ----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                                +........+               ++++++||++|.|+++++++|...+...
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                      0111111111               3799999999999999999999877643

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.83  E-value=1.7e-22  Score=164.58  Aligned_cols=153  Identities=19%  Similarity=0.242  Sum_probs=107.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...+|+++|.+++|||||+++|.+..+.....++.+.+.....+..++  ..+.||||||++.+..++...+..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            347899999999999999999987655444334444333333344455  378999999999999999999999999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHH--HHHHHHHhC--CcEEEEecCCCCC
Q 027985           94 VYDVTDE---SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAK--GQELADEYG--IKFFETSAKTNFN  165 (216)
Q Consensus        94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~~  165 (216)
                      |+|+++.   ++.+.+    ..+..   .+.|+++++||+|+.+... .+..+.  ...+...++  ++++++||++|.|
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            9999873   443332    22222   3689999999999964321 111110  000112222  6899999999999


Q ss_pred             HHHHHHHHHH
Q 027985          166 VEQVFFSIAR  175 (216)
Q Consensus       166 i~~l~~~l~~  175 (216)
                      ++++|++|..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.5e-21  Score=154.25  Aligned_cols=162  Identities=22%  Similarity=0.327  Sum_probs=87.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccc--------cceeeEEEEEEEEECCeEEEEEEEeCCCc-------c
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~   75 (216)
                      ....++|+|+|++|+|||||+++|++... ...+.        ++.+.......+..++..+.+.+|||||.       +
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence            35579999999999999999999876533 22221        34444443344455566678999999998       5


Q ss_pred             ccccccc-------cccccc-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           76 RFRTITT-------AYYRGA-------------MGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        76 ~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      .+..++.       .+++.+             ++++|+++.. ..++..+. .++..+    ..++|+|+|+||+|+..
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT  188 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC
Confidence            5555544       344332             3455555432 23344333 233332    34789999999999864


Q ss_pred             CCCCCCH--HHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          135 SKRAVPT--AKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       135 ~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      . ..+..  +.+..++...++.++++||+++.+ ++.|.++.+.+.+.
T Consensus       189 ~-~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          189 L-KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             H-HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            2 22222  455566666788999999999999 88888888877643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.83  E-value=8.5e-20  Score=144.87  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=100.2

Q ss_pred             EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCcE
Q 027985           55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADNVNK  123 (216)
Q Consensus        55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~p~  123 (216)
                      ..+.+++  +.+.|||++|++.+...|..++++++++|+|||+++          .+++..+..|+..+... ...+.|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            4455665  789999999999999999999999999999999998          88999999999888765 2357899


Q ss_pred             EEEEeCCCCCCCCC--CC---------------------------CHHHHHHHH-----HH--------hCCcEEEEecC
Q 027985          124 ILVGNKADMDESKR--AV---------------------------PTAKGQELA-----DE--------YGIKFFETSAK  161 (216)
Q Consensus       124 ivv~nK~D~~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  161 (216)
                      +||+||+|+.+...  .+                           ..+++..|+     +.        ..+.++++||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999843111  01                           134555553     22        13567899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 027985          162 TNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      +++||+++|.++.+.+.+...+
T Consensus       368 d~~nV~~vF~~v~~~I~~~~l~  389 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMHLR  389 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988766544

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=6e-21  Score=159.80  Aligned_cols=155  Identities=15%  Similarity=0.086  Sum_probs=104.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-------------------------------ccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-------------------------------ITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|.+++|||||+++|++.......                               .++.+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            34789999999999999999999866332111                               13444444444555554


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhH---HHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADN-VNKILVGNKADMDESKR  137 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~  137 (216)
                        ..+.||||||++.+...+...++.+|++|+|+|++++...   ....++...+......+ .|+++|+||+|+.+...
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence              5899999999999998888999999999999999874211   00111222221111123 45899999999865221


Q ss_pred             CC---CHHHHHHHHHHhC-----CcEEEEecCCCCCHHHH
Q 027985          138 AV---PTAKGQELADEYG-----IKFFETSAKTNFNVEQV  169 (216)
Q Consensus       138 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  169 (216)
                      ..   ....+..+....+     +.++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            11   1233444444444     58999999999999876

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.83  E-value=7e-22  Score=164.95  Aligned_cols=151  Identities=20%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCccccceeeEEEEEEEEEC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIELD   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   60 (216)
                      ....++|+|+|.+++|||||+++|+...                               ...+..++.|.+.....+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            4467899999999999999999996321                               111123444555554445444


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 027985           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWMRNIDQHAADNVN-KILVGNKADMD  133 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~  133 (216)
                      +  ..+.||||||++.+...+...++.+|++|+|+|++++.   .+   ......+..+...   ++| +|+|+||+|+.
T Consensus       254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~  328 (592)
T 3mca_A          254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred             C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence            4  68999999999999988889999999999999997532   11   1111222222222   455 88999999986


Q ss_pred             CCCCCCC---HHHHHHHH-HHhCC-----cEEEEecCCCCCHH
Q 027985          134 ESKRAVP---TAKGQELA-DEYGI-----KFFETSAKTNFNVE  167 (216)
Q Consensus       134 ~~~~~~~---~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  167 (216)
                      +......   ..++..+. +..++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            5222111   22333333 33343     69999999999998

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=2.5e-21  Score=157.48  Aligned_cols=153  Identities=16%  Similarity=0.113  Sum_probs=105.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----------------------------ccccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTT-----------------------------SFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|.+++|||||+++|++.  .+..                             +...+.+.+.....+..++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            46799999999999999999999864  2211                             0012334444434444444


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWMRNIDQHAADNVN-KILVGNKADMDE  134 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~  134 (216)
                        ..+.||||||++.+...+...++.+|++|+|+|+++...   ++   ...+++..+...   +.| +++|+||+|+.+
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence              689999999999998888889999999999999987532   21   222333322222   455 899999999963


Q ss_pred             CCCC---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHH
Q 027985          135 SKRA---VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVF  170 (216)
Q Consensus       135 ~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~  170 (216)
                      ....   ...++++.+++..+     ++++++||++|+|+.++.
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence            2111   12344556666665     689999999999997653

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=3.2e-19  Score=138.59  Aligned_cols=129  Identities=16%  Similarity=0.205  Sum_probs=100.0

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027985           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQHA-ADN  120 (216)
Q Consensus        52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~  120 (216)
                      +....+.+++  +.++|||++|++.+...|..++++++++|+|||++          +.+++.....|+..+.... ..+
T Consensus       151 i~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~  228 (340)
T 4fid_A          151 IHEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG  228 (340)
T ss_dssp             CEEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT
T ss_pred             eEEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC
Confidence            3444455554  78999999999999999999999999999999998          6788888888888876543 357


Q ss_pred             CcEEEEEeCCCCCCC--------------CCCCCHHHHHHHHH-Hh--------------------------CCcEEEEe
Q 027985          121 VNKILVGNKADMDES--------------KRAVPTAKGQELAD-EY--------------------------GIKFFETS  159 (216)
Q Consensus       121 ~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~-~~--------------------------~~~~~~~S  159 (216)
                      .|+++++||+|+.+.              ......+++..+.. ..                          .+.++++|
T Consensus       229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts  308 (340)
T 4fid_A          229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN  308 (340)
T ss_dssp             SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred             CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence            899999999998321              11124555544443 22                          26789999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          160 AKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      |+++.||+.+|..+.+.+.+ ..+
T Consensus       309 A~dt~nv~~vF~~v~~~Il~-~l~  331 (340)
T 4fid_A          309 ATDGSNIKRVFMLAVDVIMK-NMA  331 (340)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH-HHH
T ss_pred             eeCcHHHHHHHHHHHHHHHH-HHH
Confidence            99999999999999999988 443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=3.2e-21  Score=157.05  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=99.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCC--------cccccccc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTIT   81 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~   81 (216)
                      ..+...+|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+...+  ..+.||||||        ++.+...+
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHH
Confidence            3455689999999999999999999987653 33445555555555444444  5899999999        55566667


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEec
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (216)
                      ..+++.+|++|+|+|..+....  ...|+..+...  .+.|+++|+||+|+.+...     ....+. ..+. .++++||
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~-----~~~e~~-~lg~~~~~~iSA  166 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMRA-----NIYDFY-SLGFGEPYPISG  166 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCT
T ss_pred             HhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhhh-----hHHHHH-HcCCCceEEeec
Confidence            7788999999999998764322  22333333222  4789999999999854211     111111 2232 5789999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~  178 (216)
                      ++|.|+.++++.+.+.+.
T Consensus       167 ~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGG
T ss_pred             ccccchHHHHHHHHhhcc
Confidence            999999999999877653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=6.9e-20  Score=159.60  Aligned_cols=160  Identities=19%  Similarity=0.125  Sum_probs=106.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC-------C---------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|.+++|||||+++|++..       +         ..+...+.+++.  ..+.++.....+.||||||++
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdv--a~v~f~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINT--SHVEYDTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CC--SCEEEECSSCEEEEEECCCHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEE--EEEEEcCCCEEEEEEECCChH
Confidence            4467999999999999999999998631       0         001112222222  222333233689999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHHhC
Q 027985           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRA--VPTAKGQELADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~  152 (216)
                      .+.......++.+|++|+|+|+++.... ...+++..+...   ++| +++|+||+|+.+....  ...++++.+.+..+
T Consensus       371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            9988888889999999999999875322 233444444433   577 7899999999642111  12245566666665


Q ss_pred             -----CcEEEEecCCC--------CCHHHHHHHHHHHH
Q 027985          153 -----IKFFETSAKTN--------FNVEQVFFSIAREI  177 (216)
Q Consensus       153 -----~~~~~~Sa~~~--------~~i~~l~~~l~~~~  177 (216)
                           ++++++||++|        .|+.++++.|.+.+
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence                 58999999999        35777777665543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=3e-20  Score=143.48  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=101.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC------ccccce----------------------eeE------------
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT------SFITTI----------------------GID------------   51 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~------~~~~~~----------------------~~~------------   51 (216)
                      ....++|+|+|.+|+|||||+|+|++..+.+      ...|+.                      +.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999999887632      122321                      000            


Q ss_pred             -----------EEEEEEEECCeEEEEEEEeCCCccc-------------cccccccccccccEEE-EEEECCChhhHHHH
Q 027985           52 -----------FKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGIL-LVYDVTDESSFNNI  106 (216)
Q Consensus        52 -----------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~  106 (216)
                                 .....+...+ ...+.||||||...             +......+++.++.+| +|+|+++.......
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             hcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                       0000011111 14799999999642             3344556777787666 79999875443333


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--hC-CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          107 RNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE--YG-IKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       107 ~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ..++..+.   ..+.|+++|+||+|+.+... ...+.++.....  .+ ..++++||++|.|+++++++|.+.....
T Consensus       182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~  254 (299)
T 2aka_B          182 LKIAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF  254 (299)
T ss_dssp             HHHHHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence            33333332   34789999999999965322 122222210001  12 3678899999999999999988754433

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=8.9e-19  Score=132.86  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=87.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc----
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR----   86 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----   86 (216)
                      ....++|+|+|.+|+|||||+++|++... .....+..+.......+..++  ..+.||||||+..+......+++    
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~  110 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKG  110 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHH
Confidence            34679999999999999999999998875 233334444555556666777  58999999998877655444443    


Q ss_pred             -----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027985           87 -----GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN--VNKILVGNKADMDE  134 (216)
Q Consensus        87 -----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~  134 (216)
                           .+|++++|++++.......-..|+..+.......  .|+++|+||+|+.+
T Consensus       111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence                 7899999999876542222345666666554332  48999999999854

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.79  E-value=5.6e-19  Score=141.19  Aligned_cols=159  Identities=13%  Similarity=0.160  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   89 (216)
                      .|+|+|++|+|||||++.|++........+..+.......+..++. ..+.+||+||...    ...+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            4789999999999999999887542222333333444445555542 4789999999643    11222222   34689


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      .+++++|++ ...+..+..|...+..+..  ...|.++|+||+|+...   ...+.+....+..++.++.+||++++|++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            999999998 5667777777666655421  24789999999998542   22233444444557899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          168 QVFFSIAREIKQR  180 (216)
Q Consensus       168 ~l~~~l~~~~~~~  180 (216)
                      +++++|.+.+.+.
T Consensus       314 eL~~~i~~~l~~~  326 (416)
T 1udx_A          314 ALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=3.5e-19  Score=130.55  Aligned_cols=158  Identities=17%  Similarity=0.195  Sum_probs=98.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   81 (216)
                      .....+|+++|++|+|||||+++|++..+.....++.+.......+.+++   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34567999999999999999999998764333333333333333344433   578999999742          12222


Q ss_pred             cccc---ccccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHhC--C
Q 027985           82 TAYY---RGAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG--I  153 (216)
Q Consensus        82 ~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~  153 (216)
                      ..++   +.++++++++|+.++.+...  +..|+   ..   .+.|+++|+||+|+.... .+.....+..++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            2233   56899999999987644332  22222   22   268999999999975421 1111234445555444  4


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          154 KFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .++++|++++.|+++++++|.+.+.
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHh
Confidence            7899999999999999999887653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=2.3e-18  Score=146.20  Aligned_cols=120  Identities=19%  Similarity=0.201  Sum_probs=86.0

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcC--CC------CC----------ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDD--SF------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      ....+...+|+|+|.+++|||||+++|+..  .+      ..          +.....+.......+.+.+  +.+.|||
T Consensus         6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD   83 (691)
T 1dar_A            6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID   83 (691)
T ss_dssp             CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred             cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence            344567899999999999999999999832  11      00          0012233333344455555  6899999


Q ss_pred             CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |||+..+...+...++.+|++|+|+|+++.........|.. +...   ++|+++|+||+|+..
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~  143 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG  143 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            99999988888899999999999999998777666655543 3332   789999999999854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=1.2e-17  Score=127.22  Aligned_cols=119  Identities=18%  Similarity=0.164  Sum_probs=81.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc--------
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA--------   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------   83 (216)
                      ...++|+|+|.+|+|||||+|+|++..+. ....+..+.......+..++  ..+.||||||...+......        
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            45799999999999999999999987753 22233333333334445555  68999999998765433221        


Q ss_pred             -ccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027985           84 -YYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADN--VNKILVGNKADMDE  134 (216)
Q Consensus        84 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~  134 (216)
                       ..+.+|+++||+|++.. .+.. -..|+..+.......  .|+++|+||+|+.+
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence             13479999999998653 2332 235666665554322  69999999999854

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.76  E-value=1.3e-17  Score=137.50  Aligned_cols=116  Identities=17%  Similarity=0.121  Sum_probs=79.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC----------------------ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT----------------------SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      ....+|+|+|.+++|||||+++|+......                      +...+.+.......+...+  +.+.|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            356899999999999999999998632100                      0011112222233444555  6899999


Q ss_pred             CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |||+..+...+...++.+|++|+|+|+.+..... ...++..+.   ..++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            9999998888888999999999999998753322 122222222   23789999999999854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=9.2e-19  Score=139.64  Aligned_cols=85  Identities=20%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEE---------------------ECC-eEEEEEEEeCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G   73 (216)
                      ++|+|+|.+|+|||||+|+|++........|+.|.+.......                     +++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998874434444444333333211                     122 246899999999


Q ss_pred             ccc----ccccc---ccccccccEEEEEEECCCh
Q 027985           74 QER----FRTIT---TAYYRGAMGILLVYDVTDE  100 (216)
Q Consensus        74 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~  100 (216)
                      ...    ...+.   ...++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    12222   2457899999999999874

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=3e-18  Score=145.59  Aligned_cols=164  Identities=18%  Similarity=0.239  Sum_probs=105.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccee--------------eEE-------------------------
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIG--------------IDF-------------------------   52 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~--------------~~~-------------------------   52 (216)
                      ...++|+|+|.+|+|||||+|+|++..+.+ ...+++.              ..+                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            357899999999999999999999877533 3333331              100                         


Q ss_pred             --------------EEEEEEECCeE--EEEEEEeCCCccc---cccccccccccccEEEEEEECCChhhHHHHHHHHHHH
Q 027985           53 --------------KIRTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI  113 (216)
Q Consensus        53 --------------~~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l  113 (216)
                                    ....+..+...  ..+.||||||...   ....+..+++.+|++|+|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                          00001111000  2589999999654   2344556788999999999999877777665554443


Q ss_pred             HHhcCCCCcEEEEEeCCCCCCCCC--CCCHH-------HHHH-----HHHH--------hCCcEEEEecC----------
Q 027985          114 DQHAADNVNKILVGNKADMDESKR--AVPTA-------KGQE-----LADE--------YGIKFFETSAK----------  161 (216)
Q Consensus       114 ~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~-------~~~~-----~~~~--------~~~~~~~~Sa~----------  161 (216)
                      ..   .+.|+++|+||+|+.....  ....+       .+..     +...        ....+|++||+          
T Consensus       227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            32   2678999999999854220  01100       1111     1111        12369999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHH
Q 027985          162 ----TNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       162 ----~~~~i~~l~~~l~~~~~~  179 (216)
                          ++.|++++++.|.+.+..
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHH
Confidence                999999999998887653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.76  E-value=1.2e-17  Score=141.45  Aligned_cols=115  Identities=13%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-------------cc-----ccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-------------SF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ....+|+|+|+.|+|||||+++|++.....             .+     ....+.......+...+  +.++||||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence            456789999999999999999998432210             00     11223333333444444  68999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      ..+...+...++.+|++++|+|+.+.-.... ..++..+...   +.|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence            9988888889999999999999876533322 3444444433   68999999999985

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=7.1e-18  Score=143.30  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=85.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------c-----cccceeeEEEEEEEEECCeEEEEEEEeCC
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT-----------S-----FITTIGIDFKIRTIELDGKRIKLQIWDTA   72 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (216)
                      ..+...+|+|+|.+|+|||||+++|+.  ..+..           .     ..+..+.......+.+++  +.+.|||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence            345678999999999999999999984  22110           0     012223333344455555  689999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |+..+...+...++.+|++|+|+|+.+.........|. .+...   +.|+++|+||+|+..
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence            99998888888999999999999999876666555443 33333   689999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.75  E-value=2.2e-17  Score=140.49  Aligned_cols=120  Identities=19%  Similarity=0.141  Sum_probs=84.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc----------------cccceeeEEEEEEEEECC-----eEEEEE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS--FTTS----------------FITTIGIDFKIRTIELDG-----KRIKLQ   67 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~-----~~~~~~   67 (216)
                      ..+...+|+|+|..++|||||+++|+...  +...                .....+.......+.+.+     ..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34567899999999999999999997431  1100                012223333333333332     337899


Q ss_pred             EEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      ||||||+..+...+...++.+|++|+|+|+++.........| ..+..   .++|+++|+||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            999999999888888899999999999999986554444333 22322   3689999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=4.9e-19  Score=136.62  Aligned_cols=163  Identities=21%  Similarity=0.305  Sum_probs=83.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcC-CCCCccc--------cceeeEEEEEEEEECCeEEEEEEEeCCCc-------
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD-SFTTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------   74 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------   74 (216)
                      ..+..++|+|+|++|+|||||+++|++. .++....        ++.........+..++....+.+||++|.       
T Consensus        14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred             EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence            4556799999999999999999998875 4333221        11111111122223344468999999997       


Q ss_pred             cccccccc-------ccccc-------------ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           75 ERFRTITT-------AYYRG-------------AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        75 ~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      +.+..+..       .+++.             +++++|+.+.+. .+++.+.  ...+... ....++++|+||.|+..
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCC
Confidence            33333332       22222             233444444322 1222222  1222222 23579999999999854


Q ss_pred             CCC-CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          135 SKR-AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       135 ~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ... ....+.+..+++..++.++++||+++ |++++|.++.+.+.
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence            211 12345777888889999999999999 99999999988875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.74  E-value=1.1e-18  Score=138.13  Aligned_cols=155  Identities=11%  Similarity=0.089  Sum_probs=98.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEE----------------------------------------
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK----------------------------------------   53 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~----------------------------------------   53 (216)
                      ...+|+|+|.+|+|||||+++|++..+.+......+....                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            4459999999999999999999997763322211110000                                        


Q ss_pred             --------------EEEEEECCeEEEEEEEeCCCcccc-------------ccccccccccccEEEEEEECCChhhHHHH
Q 027985           54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI  106 (216)
Q Consensus        54 --------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~  106 (216)
                                    ...+...+ ...+.||||||...+             ..+...+++.+|++|+|++..+.....  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred             HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence                          00111111 136899999997664             344556788999999999875432221  


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985          107 RNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus       107 ~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      ..|+..+......+.|+++|+||+|+.+.. ....+.++.+....+..|+.++++.+.++++.+..
T Consensus       190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          190 SDAIKISREVDPSGDRTFGVLTKIDLMDKG-TDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             CHHHHHHHHSCTTCTTEEEEEECGGGCCTT-CCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCCccCCCc-ccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            234444444445578999999999986532 23334444444455678999999987777665544

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.72  E-value=1.4e-17  Score=129.40  Aligned_cols=163  Identities=14%  Similarity=0.115  Sum_probs=95.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc------ccceeeEEEE-------------------------------
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF------ITTIGIDFKI-------------------------------   54 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~------~~~~~~~~~~-------------------------------   54 (216)
                      ....++|+|+|.+|+|||||+|+|++..+.+..      .++.......                               
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            345689999999999999999999998762221      1110000000                               


Q ss_pred             ----------------------EEEEECCeEEEEEEEeCCCccc-------------cccccccccccccEEEEEEECCC
Q 027985           55 ----------------------RTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        55 ----------------------~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                                            ..+...+ ...+.||||||...             +......+++.+|++++|+|..+
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~  179 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN  179 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCC-CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence                                  0001111 14799999999653             33445567889999999999743


Q ss_pred             hhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec---CC---CCCHHHHHHH
Q 027985          100 ESSF-NNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA---KT---NFNVEQVFFS  172 (216)
Q Consensus       100 ~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~i~~l~~~  172 (216)
                      .... .....+...+   ...+.|+++|+||+|+.+... ...+.++......+..++++++   .+   +.|+.++++.
T Consensus       180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence            2211 1111222222   234789999999999865332 1222222111112245666655   44   7899999998


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      +.+.+..
T Consensus       256 ~~~~~~~  262 (315)
T 1jwy_B          256 EILYFKN  262 (315)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            8877754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=2.4e-17  Score=131.87  Aligned_cols=162  Identities=18%  Similarity=0.242  Sum_probs=81.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-Ccc-------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----   78 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----   78 (216)
                      ..+..++|+|+|++|+|||||++.|++..+. ...       .++.........+...+....+.+||++|.....    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            4556789999999999999999999987652 211       1122111111112223333579999999965431    


Q ss_pred             ---c------------------ccccccccccEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           79 ---T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        79 ---~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                         .                  +...+++++++.+++|..... .++..+. .|+..+.    .+.|+|+|+||+|+.. 
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~-  181 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT-  181 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-
Confidence               1                  123345566655555544332 2333332 4555443    2689999999999854 


Q ss_pred             CCCCCH--HHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          136 KRAVPT--AKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       136 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ..++..  ..+..++...++.++++|+.++.++.++|..|...+
T Consensus       182 ~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          182 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            222222  566777788899999999999999998887776543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=5.7e-18  Score=130.75  Aligned_cols=133  Identities=20%  Similarity=0.206  Sum_probs=106.4

Q ss_pred             HHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh-hHHHHH
Q 027985           30 CLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR  107 (216)
Q Consensus        30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  107 (216)
                      +|+.+++.+.|. ..+.|+.+..+. ..+..++   .+.|||+  ++.+..++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577788888887 778888884433 3322232   7899999  8889999999999999999999999987 788889


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHH
Q 027985          108 NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus       108 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      .|+..+..   .++|+++|+||+|+.+.. .  .++++.+++.++  +.++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~-~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDED-D--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHH-H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCch-h--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99887765   278999999999995421 1  144667777777  8999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.67  E-value=7.9e-16  Score=120.62  Aligned_cols=146  Identities=15%  Similarity=0.137  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR--   78 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~--   78 (216)
                      ++|+++|.||+|||||+|+|++........|+.|.+.....+.+++..               ..+.|||+||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            689999999999999999999877544444444444444445555421               479999999976532  


Q ss_pred             --cccc---cccccccEEEEEEECCCh----------hhHHHHHHHHHH-------------------------------
Q 027985           79 --TITT---AYYRGAMGILLVYDVTDE----------SSFNNIRNWMRN-------------------------------  112 (216)
Q Consensus        79 --~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~-------------------------------  112 (216)
                        .+..   ..++.+|++++|+|+++.          +.+.++..+..+                               
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              2222   347899999999999752          122222211111                               


Q ss_pred             ---------HH-------------------Hh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985          113 ---------ID-------------------QH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus       113 ---------l~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                               +.                   .+ ....+|+++++|+.|..- ........++.++...+..++++||+.
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechHH
Confidence                     10                   00 112489999999999532 223345667777877889999999763

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.67  E-value=9.1e-16  Score=127.04  Aligned_cols=115  Identities=14%  Similarity=0.100  Sum_probs=83.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC----------------------CCCccccceeeEEEEEEEEECCeEEEEEEEeC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDT   71 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   71 (216)
                      ..=+|+|+|..++|||||..+|+...                      ...+...+.++......+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            35679999999999999999985211                      0123344445555566677777  68999999


Q ss_pred             CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |||..|.......++-+|++|+|+|+.+.-......-|. .+..+   ++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh---CCceEEEEecccchh
Confidence            999999999999999999999999998765555544443 33333   789999999999754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=6.5e-17  Score=119.41  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=93.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeE--------------EEEEEEEEC----------------CeE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGID--------------FKIRTIELD----------------GKR   63 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~   63 (216)
                      ...+|+|+|.+|+|||||+++|+..............+              .....+...                ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45789999999999999999998652211100000000              001111110                012


Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  143 (216)
                      +.+.||||+|.-...   ..+....+.+++|+|+.....  ....+   ....   +.|+++|+||+|+.+. .....+.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~---~~~~---~~~~iiv~NK~Dl~~~-~~~~~~~  176 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKH---PEIF---RVADLIVINKVALAEA-VGADVEK  176 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHC---HHHH---HTCSEEEEECGGGHHH-HTCCHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhh---hhhh---hcCCEEEEecccCCcc-hhhHHHH
Confidence            468899999851110   011125678999999876432  11111   1111   4688999999998531 1234555


Q ss_pred             HHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          144 GQELADEYG--IKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       144 ~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      +.......+  +.++++||++|.|+++++++|.+.+..+
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            555555543  6899999999999999999998877544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=4.4e-18  Score=134.31  Aligned_cols=158  Identities=16%  Similarity=0.160  Sum_probs=92.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc------ccccee----------------------eE--------------
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS------FITTIG----------------------ID--------------   51 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~------~~~~~~----------------------~~--------------   51 (216)
                      ..++|+|+|.+|+|||||+++|++..+.+.      ..|+..                      .+              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999876321      122210                      00              


Q ss_pred             ---------EEEEEEEECCeEEEEEEEeCCCccc-------------cccccccccccc-cEEEEEEECCChhhHHHHHH
Q 027985           52 ---------FKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGA-MGILLVYDVTDESSFNNIRN  108 (216)
Q Consensus        52 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~  108 (216)
                               .....+...+ ...+.||||||...             +..+...+++.. +++++|++++....-...  
T Consensus       110 g~~~gi~~~~~~~~i~~~~-~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETT-CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--
T ss_pred             ccCCCcccCceEEEEecCC-CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--
Confidence                     0000111111 14799999999532             233444555554 455556676543222222  


Q ss_pred             HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH--HHHHhC-CcEEEEecCCCCCHHHHHHHHHHH
Q 027985          109 WMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE--LADEYG-IKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       109 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                       ...+......+.|+++|+||+|+.+.... ....++.  +....+ ..++.+||+++.|++++++++.+.
T Consensus       187 -~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          187 -LKVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             -HHHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             -HHHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence             22233333457899999999999653221 1111110  001123 257889999999999999988763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.66  E-value=4.6e-17  Score=128.52  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  143 (216)
                      +.+.||||||...   .....+..+|++++|+|....+....+..       . ....|+++|+||+|+.+.. . ....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~-~~~~p~ivVlNK~Dl~~~~-~-~~~~  238 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------G-VLELADIVVVNKADGEHHK-E-ARLA  238 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------T-SGGGCSEEEEECCCGGGHH-H-HHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------h-HhhcCCEEEEECCCCcChh-H-HHHH
Confidence            5799999999532   22334588999999999876544322211       0 1135889999999984311 1 1111


Q ss_pred             HHHHHHH---h-------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          144 GQELADE---Y-------GIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       144 ~~~~~~~---~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      ...+...   .       +.+++++||++|+|+++++++|.+.+..
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1222222   2       4689999999999999999999888765

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.64  E-value=6.3e-15  Score=116.15  Aligned_cols=155  Identities=15%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------cccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAY   84 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~   84 (216)
                      +....+|+++|.|++|||||+|+|++........|+.|.+.....+.+++  .++.|+|+||.....       ......
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            34457899999999999999999999887777788889999999999988  589999999953211       112235


Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC-------CCCCCCHHHHHHHHHHhCCcE
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDE-------SKRAVPTAKGQELADEYGIKF  155 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~~~~~~~~  155 (216)
                      ++.+|++++|+|+.++..  ........+....  -...|.++++||.|...       .......++++.+.....+..
T Consensus       147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~  224 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINS  224 (376)
T ss_dssp             HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCS
T ss_pred             HHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccC
Confidence            678999999999998632  2222223332221  12468889999999632       123355666666666655432


Q ss_pred             EEEecCCCCCHHHHH
Q 027985          156 FETSAKTNFNVEQVF  170 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~  170 (216)
                      -++--..+...+++.
T Consensus       225 kpv~~~~nv~eddl~  239 (376)
T 4a9a_A          225 AEIAFRCDATVDDLI  239 (376)
T ss_dssp             EEEEECSCCCHHHHH
T ss_pred             CCeeecccCCHHHHH
Confidence            333333344445443

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=4.8e-16  Score=134.60  Aligned_cols=120  Identities=19%  Similarity=0.207  Sum_probs=86.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--C--------------CccccceeeEEEEEEEEE--------------C
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--T--------------TSFITTIGIDFKIRTIEL--------------D   60 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------------~   60 (216)
                      ..+...+|+|+|..++|||||+++|+....  .              .+.....++......+.+              +
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            345678999999999999999999975411  0              011121222222222222              3


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      +..+.+.||||||+..+...+...++.+|++|+|+|+.+..+......|.... .   .++|+++|+||+|+..
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcch
Confidence            34689999999999999999999999999999999999887777765554433 2   2689999999999853

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.63  E-value=3.7e-15  Score=117.17  Aligned_cols=103  Identities=13%  Similarity=0.106  Sum_probs=62.3

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  143 (216)
                      +.+.|+||+|....   .......+|++++|+|+..+.....+..   .+     ...|.++|+||+|+.+.. .. ...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~~-~~~  233 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-PA-RRI  233 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-HH-HHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-hH-HHH
Confidence            57899999995321   2334678999999999976543222211   11     145789999999984310 00 011


Q ss_pred             HHHHHH----------HhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          144 GQELAD----------EYGIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       144 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      ...+..          ..+..++++||++|+|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            222221          113578999999999999999999887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.62  E-value=9e-16  Score=120.96  Aligned_cols=157  Identities=16%  Similarity=0.141  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   76 (216)
                      ++|+++|.+|+|||||+++|++........+..|.+.......+.+                   ....+.|||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999987643222223223223333333321                   124799999999765


Q ss_pred             cc----cc---cccccccccEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 027985           77 FR----TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRN---------------------------  112 (216)
Q Consensus        77 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~---------------------------  112 (216)
                      ..    .+   ....++.+|++++|+|+.+.          ..+.++..+..+                           
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            32    11   22347899999999999752          111111110000                           


Q ss_pred             ------------HHH-------------------h-cCCCCcEEEEEeCCCC--CCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985          113 ------------IDQ-------------------H-AADNVNKILVGNKADM--DESKRAVPTAKGQELADEYGIKFFET  158 (216)
Q Consensus       113 ------------l~~-------------------~-~~~~~p~ivv~nK~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                                  +..                   + ....+|+++++||.|.  .+.........++.+++..+..++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                        000                   0 0113799999999984  22111345667788888889999999


Q ss_pred             ecCCCCCHHHHHHH
Q 027985          159 SAKTNFNVEQVFFS  172 (216)
Q Consensus       159 Sa~~~~~i~~l~~~  172 (216)
                      ||+...++.++...
T Consensus       242 SAk~E~el~eL~~~  255 (368)
T 2dby_A          242 SARLEAELAELSGE  255 (368)
T ss_dssp             CHHHHHHHHTSCHH
T ss_pred             echhHHHHHHhchH
Confidence            99987666655543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.61  E-value=1.3e-17  Score=123.57  Aligned_cols=154  Identities=19%  Similarity=0.228  Sum_probs=90.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEE------------EEEEEEC-CeE-----------------
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK------------IRTIELD-GKR-----------------   63 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   63 (216)
                      ..++|+|+|.+|+|||||+++|+...+...+.++...++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999876554433333333222            1122221 110                 


Q ss_pred             --EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH
Q 027985           64 --IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT  141 (216)
Q Consensus        64 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  141 (216)
                        ..+.++|++|.-....   .+-...+..+.++|.........  ..   ....   ..|.++|+||+|+.+ ......
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~---~~~~---~~~~iiv~NK~Dl~~-~~~~~~  184 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KH---PGIM---KTADLIVINKIDLAD-AVGADI  184 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TC---HHHH---TTCSEEEEECGGGHH-HHTCCH
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hh---hhHh---hcCCEEEEeccccCc-hhHHHH
Confidence              1455666666211100   11112344566677532111100  00   0011   468899999999853 122455


Q ss_pred             HHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          142 AKGQELADEY--GIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       142 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      +.+..++...  ++.++++||++|.|++++|++|.+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            6666666655  4789999999999999999999887653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.60  E-value=5.5e-16  Score=128.47  Aligned_cols=121  Identities=19%  Similarity=0.215  Sum_probs=80.2

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeeEEEEEE----------------------EE-------
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRT----------------------IE-------   58 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~-------   58 (216)
                      ..+..++|+|+|.+|+|||||+|+|++..+.   ....++++.......                      +.       
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            4556799999999999999999999998763   333333221110000                      00       


Q ss_pred             -------ECCe-EEEEEEEeCCCccc-----------cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC
Q 027985           59 -------LDGK-RIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD  119 (216)
Q Consensus        59 -------~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~  119 (216)
                             ..+. ...+.||||||...           +...+..++..+|++|+|+|+++.........++..+..   .
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence                   0000 02589999999764           234445567889999999999875444555555555443   2


Q ss_pred             CCcEEEEEeCCCCCC
Q 027985          120 NVNKILVGNKADMDE  134 (216)
Q Consensus       120 ~~p~ivv~nK~D~~~  134 (216)
                      +.|+++|+||+|+.+
T Consensus       218 ~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          218 EDKIRVVLNKADMVE  232 (550)
T ss_dssp             GGGEEEEEECGGGSC
T ss_pred             CCCEEEEEECCCccC
Confidence            578999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.53  E-value=2.2e-15  Score=118.24  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH--
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT--  141 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~--  141 (216)
                      +.+.||||||......   ...+.+|++++|+|......+..+..     ...   +.|.++|+||+|+.+.. ....  
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~-----~~~---~~p~ivv~NK~Dl~~~~-~~~~~~  216 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK-----GLM---EVADLIVINKDDGDNHT-NVAIAR  216 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH-----HHH---HHCSEEEECCCCTTCHH-HHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH-----hhh---cccCEEEEECCCCCChH-HHHHHH
Confidence            5799999999654332   24688999999999975433211111     001   35789999999985311 1110  


Q ss_pred             HHHHHHHHHh-------CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          142 AKGQELADEY-------GIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       142 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ...+......       ...++++||++|+|+++++++|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1122211221       346899999999999999999988765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=1.7e-15  Score=127.72  Aligned_cols=113  Identities=19%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCC----------------CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD--DSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      -+|+|+|..++|||||..+|+.  +...                .+...+.|+......+.+++  +.++|+|||||..|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence            4689999999999999999852  1110                01122334444444455555  68999999999999


Q ss_pred             ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      .......++-+|++|+|+|+.+.-..+...-| ..+..+   ++|.++++||+|...
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence            99999999999999999999875433333333 334444   688999999999754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=9.1e-14  Score=118.67  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--------CC----------CCccccceeeEEEEEEEEECC-----eEEEEEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD--------SF----------TTSFITTIGIDFKIRTIELDG-----KRIKLQIW   69 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~   69 (216)
                      ++.=+|+|+|..++|||||..+|+..        ..          ..+.+...|+......+.+.+     ..+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            55678999999999999999998521        11          112233334444444444432     24789999


Q ss_pred             eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |||||..|.......++-+|++|+|+|+.+.-......-|..... .   ++|.++++||+|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-Y---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-H---TCCEEEEEECSSSTT
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-c---CCCeEEEEccccccC
Confidence            999999999999999999999999999987544444444444333 3   789999999999743

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.52  E-value=1.1e-13  Score=104.59  Aligned_cols=111  Identities=14%  Similarity=-0.014  Sum_probs=67.0

Q ss_pred             EEEEEEeCCCccccccccc------cccccccEEEEEEECCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWMR-NIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                      +.+.||||||.........      ..+.. +++|+++|+.............. ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5799999999765432211      23456 88889998754322222211111 1111111257999999999985421


Q ss_pred             CCCCHHHHHH----------------------------HHHHhC--CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          137 RAVPTAKGQE----------------------------LADEYG--IKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       137 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .   ...+..                            +....+  ..++++||++++|+++++++|.+.+.
T Consensus       188 ~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 E---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             H---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             c---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            1   111111                            123333  47999999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=9.7e-15  Score=123.90  Aligned_cols=159  Identities=16%  Similarity=0.137  Sum_probs=94.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccce-------------------------------------------
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTI-------------------------------------------   48 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~-------------------------------------------   48 (216)
                      ....+|+|+|.+++|||||+|+|++..+-+ .....+                                           
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            356799999999999999999999977622 111100                                           


Q ss_pred             -------eeEEEEEEEEECCeEEEEEEEeCCCcccc-------------cccccccc-ccccEEEEEEECCChhhHHHHH
Q 027985           49 -------GIDFKIRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYY-RGAMGILLVYDVTDESSFNNIR  107 (216)
Q Consensus        49 -------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  107 (216)
                             +.+.....+...+. .++.|+||||....             ..+...++ ..+|++++|+|++......+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                   00011111222221 25889999995431             11222233 5789999999998643322221


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-H-HHHhC-CcEEEEecCCCCCHHHHHHHHHHH
Q 027985          108 NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE-L-ADEYG-IKFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       108 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      .++..+   ...+.|+++|+||+|+.+.... ....... . ....+ ..++.+||++|.|+++|++.+.+.
T Consensus       208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~-~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEV---DPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHH---CTTCSSEEEEEECTTSSCTTCC-SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---HhcCCCEEEEEeCcccCCcchh-hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            222222   3347899999999998653222 1111110 0 00112 357889999999999999988763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.42  E-value=3.9e-13  Score=105.17  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  143 (216)
                      +.+.|+||+|.....   ......+|.+++|+|.......+.+...   +.     ..+.++++||+|+... .......
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~-~~~s~~~  215 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDG-ERRASAA  215 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCc-hhHHHHH
Confidence            589999999964322   1234679999999998644322111111   11     2355778899997431 1111222


Q ss_pred             HHHHHHHh----------CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          144 GQELADEY----------GIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       144 ~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .+.+....          ..+++.+||+++.|++++++.|.+.+.
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            33333221          347899999999999999999988765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.41  E-value=5.1e-13  Score=103.01  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=77.7

Q ss_pred             ccccccccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC-HHHHHHHHHHh
Q 027985           74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-TAKGQELADEY  151 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~  151 (216)
                      ++++..+...+++++|++++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.+.. .+. .+....+++..
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~-~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE-EKKELERWISIYRDA  141 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH-HHHHHHHHHHHHHHT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc-ccHHHHHHHHHHHHC
Confidence            5667777778999999999999999886 88888889887665   378999999999985421 111 34455666777


Q ss_pred             CCcEEEEecCCCCCHHHHHHHHH
Q 027985          152 GIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      +..++++||++|+|++++++.+.
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc
Confidence            89999999999999999998763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.39  E-value=4.2e-12  Score=100.67  Aligned_cols=86  Identities=20%  Similarity=0.205  Sum_probs=64.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCcccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF   77 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~   77 (216)
                      ...+|+++|.+|+|||||+|.|++... .....|+.+.+.....+.+.+..               ..+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457999999999999999999999776 56666776766766667666521               36899999995431


Q ss_pred             -------ccccccccccccEEEEEEECCC
Q 027985           78 -------RTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        78 -------~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                             .......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   2223345688999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.36  E-value=4.1e-13  Score=106.26  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=54.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF   77 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   77 (216)
                      ...++|+++|.+|+|||||+|+|++..+.....|+.|.+.....+.+++.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34689999999999999999999998776666677776666666666542               135999999997653


Q ss_pred             cc-------ccccccccccEEEEEEECCChh
Q 027985           78 RT-------ITTAYYRGAMGILLVYDVTDES  101 (216)
Q Consensus        78 ~~-------~~~~~~~~~d~~i~v~d~~~~~  101 (216)
                      ..       .+..+++.+|++++|+|+.+..
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            32       3445678999999999997643

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.25  E-value=1.3e-12  Score=93.67  Aligned_cols=103  Identities=9%  Similarity=-0.026  Sum_probs=67.7

Q ss_pred             CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-----CCCCcEEEEEeCC-CCCCCCCCCCHHHHH
Q 027985           72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-----ADNVNKILVGNKA-DMDESKRAVPTAKGQ  145 (216)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~~p~ivv~nK~-D~~~~~~~~~~~~~~  145 (216)
                      +|+...+.+|..++.++|++|||+|.+|.+.++ .+..+..+....     ..+.|++|++||. |++.   ..+..++.
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI~  185 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA  185 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHHH
Confidence            378888999999999999999999999875544 333332222211     2468999999995 6643   33444433


Q ss_pred             HHHH----HhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          146 ELAD----EYGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       146 ~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      ....    ...+.+..|||.+|+|+.+-++||.+.+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            3221    12367899999999999999999987663

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.11  E-value=4.2e-11  Score=90.07  Aligned_cols=104  Identities=9%  Similarity=-0.031  Sum_probs=72.0

Q ss_pred             CCCccccccccccccccccEEEEEEECCChhhHHHHHHHH----HHHHHh-cCCCCcEEEEEeC-CCCCCCCCCCCHHHH
Q 027985           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM----RNIDQH-AADNVNKILVGNK-ADMDESKRAVPTAKG  144 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~----~~l~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~~  144 (216)
                      .+|+...+..|..++.++|++|||+|.+|.+.++ .+..+    ..+... ...+.|++|.+|| .|++.   .....++
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~EI  269 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYL  269 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHHH
Confidence            4577888999999999999999999999986544 22222    222221 1247899999996 58754   3344443


Q ss_pred             HHHHH----HhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          145 QELAD----EYGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       145 ~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .....    ...+.+..|||.+|+|+.+-++||.+.+.
T Consensus       270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            32221    12357899999999999999999998764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.09  E-value=5.8e-12  Score=99.69  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC------CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----cc--
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TA--   83 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~--   83 (216)
                      .+|+++|.+|+|||||+|+|++.      .......++.|.+.  ..+.++.   .+.++||||........    ..  
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999876      33334455555433  3344444   37899999954322111    11  


Q ss_pred             -cc---ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985           84 -YY---RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS  159 (216)
Q Consensus        84 -~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                       .+   ...+.++|+++....-.+..+..    +......+.|+++++||.|..+  ..........+.+..+..+.+.+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence             11   56788999998843211111110    1112234689999999999854  22233445556667777777666


Q ss_pred             cCCCCCH
Q 027985          160 AKTNFNV  166 (216)
Q Consensus       160 a~~~~~i  166 (216)
                      +.+.+++
T Consensus       312 ~~~~~~~  318 (369)
T 3ec1_A          312 KRYAAEF  318 (369)
T ss_dssp             GGGTTTC
T ss_pred             chhhhhc
Confidence            6655444

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.99  E-value=9.9e-10  Score=86.87  Aligned_cols=96  Identities=22%  Similarity=0.308  Sum_probs=71.5

Q ss_pred             CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHH
Q 027985           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELA  148 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~  148 (216)
                      ..+.|..++..+.+.++++++|+|+.++.     ..|...+..... +.|+++|+||+|+.+.  ....+...    .++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~--~~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK--SVKHDKVKHWMRYSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT--TSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc--ccCHHHHHHHHHHHH
Confidence            34677888888889999999999999853     345555555544 6899999999999642  22333333    345


Q ss_pred             HHhCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027985          149 DEYGI---KFFETSAKTNFNVEQVFFSIARE  176 (216)
Q Consensus       149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~  176 (216)
                      +..+.   .++.+||++|+|++++++.|.+.
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            66676   79999999999999999998653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.95  E-value=3.1e-11  Score=95.44  Aligned_cols=135  Identities=15%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----cc-
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF-------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TA-   83 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~-   83 (216)
                      .+|+++|.+|+|||||+|+|++...       .....++.|..  ...+.+++   .+.++||||......+.    .. 
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence            5799999999999999999987521       12334444433  33344444   38899999964322111    11 


Q ss_pred             -----ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985           84 -----YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET  158 (216)
Q Consensus        84 -----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                           .....+.++|+++......+..+.    .+......+.|+++++||.|..+  ..........+.+..+..+++.
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSS
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCC
Confidence                 135678888888874321111110    01112234689999999999854  2222334445556666655555


Q ss_pred             ecC
Q 027985          159 SAK  161 (216)
Q Consensus       159 Sa~  161 (216)
                      ++.
T Consensus       310 ~~~  312 (368)
T 3h2y_A          310 TPE  312 (368)
T ss_dssp             CHH
T ss_pred             chh
Confidence            543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.93  E-value=9.4e-10  Score=87.91  Aligned_cols=62  Identities=23%  Similarity=0.392  Sum_probs=36.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----ccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ..++++|+|++|+|||||++.|++..+....    .+..........+...+....+.++|++|..
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            4567999999999999999999887542211    1222222111122222222478999999843

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.93  E-value=4.4e-10  Score=91.89  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=84.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHh------cCCCCC-cc---ccc-----------eeeEEEEEE---------------
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFS------DDSFTT-SF---ITT-----------IGIDFKIRT---------------   56 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~------~~~~~~-~~---~~~-----------~~~~~~~~~---------------   56 (216)
                      .....|+|+|.+|+||||+++.|.      +..... ..   .+.           ....++...               
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346689999999999999999997      332200 00   000           001111100               


Q ss_pred             EEECCeEEEEEEEeCCCcccccc-cccc---c--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeC
Q 027985           57 IELDGKRIKLQIWDTAGQERFRT-ITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-ILVGNK  129 (216)
Q Consensus        57 ~~~~~~~~~~~i~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK  129 (216)
                      +...+  +.+.|+||||...... ++..   .  +..+|.+++|+|+.......   .....+...    .|+ .+|+||
T Consensus       179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTK  249 (504)
T ss_dssp             HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEEC
T ss_pred             HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeC
Confidence            00022  5799999999653221 1111   1  22689999999997653321   112223221    464 888999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHhCCcE------------------EEEecCCCCC-HHHHHHHHHHH
Q 027985          130 ADMDESKRAVPTAKGQELADEYGIKF------------------FETSAKTNFN-VEQVFFSIARE  176 (216)
Q Consensus       130 ~D~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~l~~~l~~~  176 (216)
                      .|... ...    .+.......+.++                  +++|+..|.| +.+|++++.+.
T Consensus       250 ~D~~~-~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHA-KGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCC-CCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             Ccccc-chH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99743 111    1222334444433                  3467888988 99999888765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.86  E-value=1.9e-08  Score=80.34  Aligned_cols=160  Identities=13%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-ccceeeEE--EEEEEEECCeEEEEEEEeCCCcccccccc-----ccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-ITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAYYR   86 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~   86 (216)
                      ...++|+|++|+|||||+|.+++....... ....+.+.  ....+... ..-.+.++|++|........     ...+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            347899999999999999999884322111 00000000  00111111 11158899999954211111     11233


Q ss_pred             cccEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--C----CCCCCCHHH----HHHHH----HH
Q 027985           87 GAMGILLVYDVT--DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD--E----SKRAVPTAK----GQELA----DE  150 (216)
Q Consensus        87 ~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~--~----~~~~~~~~~----~~~~~----~~  150 (216)
                      ..+..++ ++..  ......    ....+..   .+.|+++|.||.|+.  +    .........    ++.+.    ..
T Consensus       148 ~~~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            4455554 7775  222211    1222222   267999999999962  1    111122222    33332    12


Q ss_pred             hC---CcEEEEec--CCCCCHHHHHHHHHHHHHHHHhh
Q 027985          151 YG---IKFFETSA--KTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       151 ~~---~~~~~~Sa--~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      .+   ..+|.+|+  .++.|++++.+.+.+.+.+....
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~  257 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH  257 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence            22   36799999  55667999999998887655433

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.82  E-value=4.1e-09  Score=83.40  Aligned_cols=97  Identities=23%  Similarity=0.295  Sum_probs=70.1

Q ss_pred             CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH----HH
Q 027985           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE----LA  148 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  148 (216)
                      .++.|..++..+++.++++++|+|+.++.+     .|...+..... +.|+++|+||+|+.+.  ....+....    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~--~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR--SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT--TCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC--ccCHHHHHHHHHHHH
Confidence            367788888888899999999999998763     33344444443 6899999999999652  222333333    34


Q ss_pred             HHhCC---cEEEEecCCCCCHHHHHHHHHHHH
Q 027985          149 DEYGI---KFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      +..+.   .++.+||++|.|++++++.|.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            55665   689999999999999999886543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=4.9e-09  Score=79.89  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             EEeCCCccc-cccccccccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q 027985           68 IWDTAGQER-FRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG  144 (216)
Q Consensus        68 i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  144 (216)
                      |-..|||.. ........+..+|+++.|+|+.++.+..  .+.++       . .+.|.++|+||+|+.+.   ...+..
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l-~~kp~ilVlNK~DL~~~---~~~~~~   71 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------L-KNKPRIMLLNKADKADA---AVTQQW   71 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------C-SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------H-CCCCEEEEEECcccCCH---HHHHHH
Confidence            446888753 3455666789999999999999886654  23333       2 36899999999999641   111222


Q ss_pred             HHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          145 QELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ..+.+..+..++++||.++.|++++++.+.+.+....
T Consensus        72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~  108 (282)
T 1puj_A           72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKF  108 (282)
T ss_dssp             HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence            3344445788999999999999999999888776543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.79  E-value=2.7e-08  Score=75.33  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++++|+|++|+|||||++.|++.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            588999999999999999999764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.66  E-value=2.2e-08  Score=76.24  Aligned_cols=58  Identities=28%  Similarity=0.360  Sum_probs=36.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ...++|+++|.||+|||||+|+|.+... .....++.|....  .+..+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            4568999999999999999999998764 3444454443332  333443   58999999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.50  E-value=3.9e-08  Score=74.12  Aligned_cols=56  Identities=20%  Similarity=0.318  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      ++++++|.+|+|||||+|+|.+.... ....++.+...  ..+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence            69999999999999999999987652 23333333222  2233333   689999999653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.49  E-value=2.7e-07  Score=74.14  Aligned_cols=90  Identities=14%  Similarity=0.060  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCccccccccc------cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.........      ......|.+++|+|+.........   ...+...   -.+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc---
Confidence            5789999999433221111      112347889999999764332222   2333332   235578899999732   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                        ....+..+....+.++.+++.  |+++
T Consensus       254 --~gG~~ls~~~~~g~PI~fig~--Ge~v  278 (443)
T 3dm5_A          254 --KGGGALSAVAATGAPIKFIGT--GEKI  278 (443)
T ss_dssp             --SHHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred             --cccHHHHHHHHHCCCEEEEEc--CCCh
Confidence              223445556667888888874  5543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.36  E-value=7.8e-07  Score=71.63  Aligned_cols=83  Identities=18%  Similarity=0.090  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCcccccc-cc-----ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRT-IT-----TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV-N-KILVGNKADMDES  135 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~D~~~~  135 (216)
                      +.+.|+||||...... +.     ...+..+|.+++|+|+.....   .......+.   . .. | ..+|+||.|... 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~---~-~~~~i~gvVlnK~D~~~-  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK---E-AVGEIGSIIVTKLDGSA-  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH---T-TSCSCEEEEEECSSSCS-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh---h-cccCCeEEEEeCCCCcc-
Confidence            5789999999543211 11     112236899999999865432   111122222   1 34 5 788999999732 


Q ss_pred             CCCCCHHHHHHHHHHhCCcEEEE
Q 027985          136 KRAVPTAKGQELADEYGIKFFET  158 (216)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      .    ...+..+....+.++.++
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    122334666667666655

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.32  E-value=3.3e-07  Score=76.31  Aligned_cols=65  Identities=15%  Similarity=0.118  Sum_probs=39.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-Ccccc--ceeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFIT--TIGIDFKIRTIEL-DGKRIKLQIWDTAGQER   76 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   76 (216)
                      ....+.|+|+|.||+|||||+|+|++.... .....  ..+.......... ......+.|+||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            346789999999999999999999987642 11111  1111111111111 11114789999999654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.30  E-value=1.8e-07  Score=70.49  Aligned_cols=93  Identities=17%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             CCCcccc-ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 027985           71 TAGQERF-RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD  149 (216)
Q Consensus        71 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  149 (216)
                      .|||... .......+..+|+++.|+|+.++.+....     .+. ..  ++|.++|+||+|+.+..   ..+....+.+
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~---~~~~~~~~~~   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEK---TTKKWVEFFK   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHH---HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHH---HHHHHHHHHH
Confidence            4676532 23455678899999999999987654321     011 11  68999999999996521   1122334455


Q ss_pred             HhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985          150 EYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      ..+..+ .+||+++.|++++++.+..
T Consensus        73 ~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 KQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            567788 9999999999999887644

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.19  E-value=3.7e-07  Score=73.27  Aligned_cols=90  Identities=14%  Similarity=0.093  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCccc--ccc-c---cccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           64 IKLQIWDTAGQER--FRT-I---TTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        64 ~~~~i~D~~G~~~--~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      +.+.|+||||...  ... .   ....  ....+.+++|+|+.........   ...+...   -.+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence            5788999999533  111 1   1111  1235889999999764332222   2333333   235688999999632 


Q ss_pred             CCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985          136 KRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                          ....+..+....+.++.+++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                233456666778899888884  6654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.17  E-value=5.8e-07  Score=69.05  Aligned_cols=90  Identities=14%  Similarity=0.162  Sum_probs=58.6

Q ss_pred             cccccccccccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHHhCCcEE
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADEYGIKFF  156 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~  156 (216)
                      .+....+.++|.+++|+|+.+|..-. .+.+++....   ..++|.++|+||+|+.+.... ........+....+..++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            34444678999999999998765433 3333332222   237899999999999652110 012334455556788999


Q ss_pred             EEecCCCCCHHHHHH
Q 027985          157 ETSAKTNFNVEQVFF  171 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~  171 (216)
                      .+||.++.|+++|+.
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999998888776554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.17  E-value=4.3e-06  Score=65.51  Aligned_cols=86  Identities=15%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             ccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985           84 YYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ...++|.+++|.+.. |. +...+.+++......   ++|+++|+||+|+.+.......+.........+..++.+|+.+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            467899999887654 54 333344443333333   6788999999999652110001122233445678999999999


Q ss_pred             CCCHHHHHHHH
Q 027985          163 NFNVEQVFFSI  173 (216)
Q Consensus       163 ~~~i~~l~~~l  173 (216)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999887643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.09  E-value=7e-06  Score=62.87  Aligned_cols=92  Identities=14%  Similarity=0.107  Sum_probs=56.0

Q ss_pred             EEEEEEeCCCccc--ccc-ccc-----cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027985           64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDE  134 (216)
Q Consensus        64 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~  134 (216)
                      +.+.|+||||...  ... +..     .....+|.+++|+|+....   +.......+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5799999999655  211 111     1234689999999986432   12122222222    245 678899999632


Q ss_pred             CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985          135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                           ....+..+....+.++.+++  +|++++++
T Consensus       254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          254 -----KGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             -----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             -----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence                 23345566777788888887  67776543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.02  E-value=1.2e-05  Score=67.69  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .|+|+|+.|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.86  E-value=2.1e-05  Score=61.10  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             EEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985           65 KLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  138 (216)
                      .+.++|++|..........      ..-..|-.++++|.....   ++......+....   -..++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence            4667899995432211111      112367788999975442   3333333343322   23478889999521    


Q ss_pred             CCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985          139 VPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                       ..-.+..+....+.++.+++  +|++++++
T Consensus       283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          283 -RGGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence             22345567778889988887  77776544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.85  E-value=6.6e-07  Score=73.06  Aligned_cols=110  Identities=11%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------cc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTIT--------TA   83 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~~   83 (216)
                      ..+.|+++|.+|+||||+.+.|....... ..++.............+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999986542211 011111000000001111112346788888632  22222        34


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN  128 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~n  128 (216)
                      ++...++.++|+|.++. ..+....|+..+...   +.+++++-.
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~  157 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVES  157 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEE
Confidence            55567788999999986 555666666666554   344555443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.78  E-value=1.9e-05  Score=63.69  Aligned_cols=27  Identities=19%  Similarity=0.103  Sum_probs=23.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .....-|.|+|.+++|||||+|.|++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            445677899999999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.52  E-value=5.8e-05  Score=54.10  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=23.2

Q ss_pred             CccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985            4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus         4 ~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      +++|........--|+|+|++|+|||||++.|...
T Consensus         8 ~~~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A            8 SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             --------CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            44555555556667899999999999999999854

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.47  E-value=6.5e-05  Score=53.07  Aligned_cols=23  Identities=30%  Similarity=0.765  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ++++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.33  E-value=0.00011  Score=51.79  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999999764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.28  E-value=0.0011  Score=53.33  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=45.6

Q ss_pred             EEEEEEeCCCcccccc-ccc-----cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~  136 (216)
                      +.+.|+||||...... ...     ..+...+.+++|+|+......   ......+..    ..+ .-+|+||.|... .
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~-~  255 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDA-R  255 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSS-C
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCc-c
Confidence            5799999999543321 111     123467889999998754322   222222322    233 346889999632 1


Q ss_pred             CCCCHHHHHHHHHHhCCcEEEE
Q 027985          137 RAVPTAKGQELADEYGIKFFET  158 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                        .  ..+..+....+.++.++
T Consensus       256 --~--g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 --G--GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             --C--THHHHHHHHHCCCEEEE
T ss_pred             --H--HHHHHHHHHHCCCeEEE
Confidence              1  23345566667655444

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.27  E-value=0.00014  Score=52.15  Aligned_cols=21  Identities=43%  Similarity=0.638  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++|+|++|+|||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            579999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.22  E-value=0.0001  Score=56.62  Aligned_cols=24  Identities=42%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -.++|+|++|+|||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            368999999999999999998654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.20  E-value=0.00018  Score=51.01  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.17  E-value=0.00021  Score=51.31  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4789999999999999999765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.13  E-value=0.00024  Score=51.29  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|+|++|||||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999987643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.12  E-value=0.00025  Score=51.75  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999997643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.10  E-value=0.00024  Score=49.65  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            46899999999999999754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.08  E-value=0.00028  Score=51.46  Aligned_cols=23  Identities=35%  Similarity=0.640  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999987643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.08  E-value=0.00044  Score=49.58  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ......|+|.|.+||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999998863

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.07  E-value=0.00043  Score=48.38  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.07  E-value=0.00086  Score=51.40  Aligned_cols=20  Identities=50%  Similarity=0.758  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      .++++|++|+|||||+|.|.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.05  E-value=0.00037  Score=50.30  Aligned_cols=26  Identities=27%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44578899999999999999988653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.04  E-value=0.00036  Score=49.52  Aligned_cols=21  Identities=38%  Similarity=0.667  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|+|++|+|||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.04  E-value=0.00035  Score=50.49  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -|+|+|++|+|||||++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57899999999999999998653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.01  E-value=0.00038  Score=48.06  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999987654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.00  E-value=0.00039  Score=50.00  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.98  E-value=0.00041  Score=48.31  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..|+|+|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.98  E-value=0.00039  Score=51.30  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999888754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.98  E-value=0.00045  Score=47.99  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027985           16 IKLLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l   35 (216)
                      +-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.97  E-value=0.00041  Score=49.17  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -++|+|++|+|||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.97  E-value=0.00051  Score=48.05  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .-|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.96  E-value=0.00045  Score=50.05  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      ++|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999884

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.95  E-value=0.00043  Score=49.63  Aligned_cols=24  Identities=38%  Similarity=0.605  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999987654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.94  E-value=0.00045  Score=47.96  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.94  E-value=0.0005  Score=53.84  Aligned_cols=24  Identities=38%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            579999999999999999997653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.94  E-value=0.00049  Score=49.88  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998853

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.92  E-value=0.00049  Score=49.32  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.92  E-value=0.00046  Score=50.54  Aligned_cols=23  Identities=39%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999988754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.90  E-value=0.0006  Score=50.53  Aligned_cols=22  Identities=27%  Similarity=0.649  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ...|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999987

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.89  E-value=0.00056  Score=50.64  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.88  E-value=0.00073  Score=48.65  Aligned_cols=23  Identities=17%  Similarity=0.037  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.88  E-value=0.00057  Score=49.66  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999988754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.87  E-value=0.00072  Score=47.78  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...|+|+|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999988654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.86  E-value=0.00066  Score=49.04  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.85  E-value=0.0007  Score=47.34  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-|+|.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.85  E-value=0.0006  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.85  E-value=0.0006  Score=51.54  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36899999999999999988754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.84  E-value=0.0006  Score=50.37  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.84  E-value=0.0005  Score=48.31  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.83  E-value=0.0007  Score=47.84  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.83  E-value=0.00069  Score=48.83  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|+|+.|||||||++.|.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.83  E-value=0.00085  Score=47.26  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.82  E-value=0.00062  Score=48.48  Aligned_cols=22  Identities=36%  Similarity=0.640  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999988653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.82  E-value=0.0015  Score=44.18  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999987654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.81  E-value=0.00065  Score=48.66  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|+|.+||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.81  E-value=0.00076  Score=47.69  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.81  E-value=0.00065  Score=50.94  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998763

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.81  E-value=0.00073  Score=48.26  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.81  E-value=0.00065  Score=50.80  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.81  E-value=0.00067  Score=51.02  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            36899999999999999998754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.80  E-value=0.00085  Score=47.51  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.80  E-value=0.00077  Score=49.98  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.80  E-value=0.00069  Score=50.84  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            46899999999999999988754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.79  E-value=0.00072  Score=49.66  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.78  E-value=0.00078  Score=50.09  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.78  E-value=0.00072  Score=50.53  Aligned_cols=23  Identities=35%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.78  E-value=0.00077  Score=47.30  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-++|+|.+|+|||||++.|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46789999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.00083  Score=48.07  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999998853

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.78  E-value=0.00074  Score=48.39  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.77  E-value=0.00074  Score=49.99  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999988754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.77  E-value=0.00074  Score=48.88  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998853

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.77  E-value=0.00077  Score=51.64  Aligned_cols=22  Identities=32%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5789999999999999988753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.76  E-value=0.00079  Score=50.13  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999886

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.76  E-value=0.001  Score=47.62  Aligned_cols=25  Identities=24%  Similarity=0.591  Sum_probs=21.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999998854

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.76  E-value=0.001  Score=47.85  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.75  E-value=0.00094  Score=47.68  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=22.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ......|+|.|.+||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344578999999999999999998765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.75  E-value=0.0008  Score=50.09  Aligned_cols=23  Identities=43%  Similarity=0.651  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999988754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.75  E-value=0.00079  Score=48.21  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..-|+|+|++||||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.74  E-value=0.00097  Score=47.20  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.74  E-value=0.00085  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999886

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.73  E-value=0.00059  Score=49.35  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.72  E-value=0.00082  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999988754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.72  E-value=0.00091  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.72  E-value=0.0011  Score=49.16  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..+.|+|+|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998853

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.72  E-value=0.0011  Score=47.64  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|+|+|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999975

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.72  E-value=0.0009  Score=48.76  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.72  E-value=0.001  Score=50.96  Aligned_cols=24  Identities=38%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .++++|++|+|||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.72  E-value=0.00094  Score=50.57  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999988754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.72  E-value=0.00099  Score=46.09  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.68  E-value=0.001  Score=48.33  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|+|+|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998854

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.68  E-value=0.00093  Score=49.85  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999988764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.67  E-value=0.00095  Score=50.20  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999988754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.67  E-value=0.0012  Score=48.42  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....-|+|.|..|||||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567899999999999999998775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.66  E-value=0.00095  Score=51.40  Aligned_cols=26  Identities=19%  Similarity=0.091  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....-|+|+|++|||||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34567899999999999999988653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.66  E-value=0.00061  Score=49.98  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-cC
Q 027985           17 KLLLIGDSGVGKSCLLLRFS-DD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~-~~   38 (216)
                      -++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998 54

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.66  E-value=0.0009  Score=48.76  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.66  E-value=0.0011  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998853

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.65  E-value=0.0017  Score=45.81  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|+|+|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.64  E-value=0.0012  Score=46.30  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ...|+|.|.+||||||+.+.|.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            3568999999999999999886

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.62  E-value=0.0012  Score=49.52  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.62  E-value=0.0014  Score=49.84  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...-|+|.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.60  E-value=0.0013  Score=48.07  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998853

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.59  E-value=0.00061  Score=47.67  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+.|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.58  E-value=0.0012  Score=46.18  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.58  E-value=0.0011  Score=52.09  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.57  E-value=0.0012  Score=48.15  Aligned_cols=21  Identities=24%  Similarity=0.607  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      ..|+|.|.+||||||+.+.|.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999885

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.56  E-value=0.0012  Score=49.83  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.56  E-value=0.0018  Score=45.65  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.56  E-value=0.0019  Score=46.41  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...|+|+|.+||||||+.+.|...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.56  E-value=0.00083  Score=45.85  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|++|+|||||++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999987643

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.55  E-value=0.0012  Score=51.78  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .|+|+|++|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.54  E-value=0.0016  Score=46.58  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999998765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.53  E-value=0.001  Score=51.08  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|+.|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5789999999999999988764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.51  E-value=0.0024  Score=46.43  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999988753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.50  E-value=0.0016  Score=46.06  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.49  E-value=0.0015  Score=48.60  Aligned_cols=22  Identities=36%  Similarity=0.672  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++++|++|+|||||++.+.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.49  E-value=0.00099  Score=46.74  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=16.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.49  E-value=0.0012  Score=48.03  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999885

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.48  E-value=0.0018  Score=47.91  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|.|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.48  E-value=0.0014  Score=51.33  Aligned_cols=24  Identities=38%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      -++|+|+.|||||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            368999999999999999987653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.48  E-value=0.0015  Score=47.46  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998853

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.47  E-value=0.0018  Score=45.12  Aligned_cols=23  Identities=17%  Similarity=0.279  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..++|+|.+|||||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.46  E-value=0.0016  Score=49.61  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999988753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.46  E-value=0.0022  Score=49.48  Aligned_cols=26  Identities=19%  Similarity=0.096  Sum_probs=21.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...++-|+|.|++|||||||++.|..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988743

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.45  E-value=0.0016  Score=50.94  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999988764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.45  E-value=0.0019  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ....|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998853

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.44  E-value=0.0017  Score=50.96  Aligned_cols=23  Identities=35%  Similarity=0.314  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999988754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.44  E-value=0.0017  Score=48.43  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998853

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.43  E-value=0.0014  Score=48.77  Aligned_cols=26  Identities=31%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ......|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.43  E-value=0.0023  Score=45.86  Aligned_cols=25  Identities=28%  Similarity=0.178  Sum_probs=21.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .....|+|+|.+|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.43  E-value=0.0017  Score=46.00  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.43  E-value=0.0023  Score=48.69  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHh
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ......|+|.|++|||||||++.|.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456789999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.43  E-value=0.0018  Score=45.40  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.43  E-value=0.002  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.42  E-value=0.0018  Score=46.60  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.41  E-value=0.0018  Score=50.85  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            36899999999999999988754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.41  E-value=0.0018  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999998755

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.41  E-value=0.0019  Score=44.82  Aligned_cols=22  Identities=14%  Similarity=0.375  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998853

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.41  E-value=0.0016  Score=50.54  Aligned_cols=23  Identities=17%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.40  E-value=0.0018  Score=45.99  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.40  E-value=0.0018  Score=50.79  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999988754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.38  E-value=0.0024  Score=44.68  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.37  E-value=0.0017  Score=51.03  Aligned_cols=23  Identities=22%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+.-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.37  E-value=0.00081  Score=48.50  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.37  E-value=0.0018  Score=51.17  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.35  E-value=0.002  Score=50.84  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999988754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.35  E-value=0.002  Score=50.74  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999987654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.34  E-value=0.0021  Score=45.16  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.34  E-value=0.002  Score=49.44  Aligned_cols=90  Identities=13%  Similarity=0.051  Sum_probs=48.6

Q ss_pred             EEEEEeCCCcccccc-----c-------cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           65 KLQIWDTAGQERFRT-----I-------TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~-----~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                      .+.++|++|......     +       ........+.+++++|.......-   ..+..+....  + ..++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~--~-~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAV--G-LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHH--C-CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHc--C-CcEEEEECCcc
Confidence            456889999432111     0       011233466788899986543322   2223333221  2 34778899985


Q ss_pred             CCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985          133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      .. .    .-.+..+....+.++.+++  +|++++
T Consensus       260 ~a-~----gg~~l~i~~~~~~pi~~ig--~Ge~~~  287 (304)
T 1rj9_A          260 TA-K----GGVLIPIVRTLKVPIKFVG--VGEGPD  287 (304)
T ss_dssp             SC-C----CTTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred             cc-c----ccHHHHHHHHHCCCeEEEe--CCCChh
Confidence            32 1    2234456677888887776  555544

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.32  E-value=0.002  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|+|++|||||||++.+++..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            47999999999999999987643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.31  E-value=0.0022  Score=48.42  Aligned_cols=22  Identities=36%  Similarity=0.672  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++++|++|+|||||++.+.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            8999999999999999998643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.30  E-value=0.0021  Score=49.94  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.30  E-value=0.0022  Score=49.13  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .--++++|+.|+||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34678999999999999998853

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.29  E-value=0.0027  Score=48.74  Aligned_cols=25  Identities=20%  Similarity=0.130  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|+|+|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988763

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.29  E-value=0.0028  Score=45.87  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.28  E-value=0.0021  Score=52.88  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+++..
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.28  E-value=0.0017  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            36899999999999999988754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.27  E-value=0.0034  Score=44.74  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=22.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.+...|+|.|.+||||||+.+.|...
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHh
Confidence            346788999999999999999988643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.27  E-value=0.0023  Score=46.50  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|+|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4688999999999999998743

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.25  E-value=0.0029  Score=47.02  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=21.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.24  E-value=0.003  Score=43.67  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=18.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      .-.|+|.|.+||||||+.+.|.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.24  E-value=0.0028  Score=47.16  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999887

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.22  E-value=0.0029  Score=46.50  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ..+.|+|.|++||||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999999885

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.17  E-value=0.0026  Score=50.44  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|+.|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4689999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.14  E-value=0.003  Score=46.97  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...+++.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.13  E-value=0.0031  Score=45.01  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.13  E-value=0.0027  Score=48.32  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999988654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.11  E-value=0.0017  Score=50.91  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999988754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.11  E-value=0.0022  Score=49.48  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      --++|+|..|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            356899999999999999998653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.10  E-value=0.0025  Score=44.47  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999988643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.10  E-value=0.0037  Score=47.30  Aligned_cols=24  Identities=42%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHh
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ...+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999885

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.10  E-value=0.0033  Score=44.04  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -.+|+|+.|+|||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.09  E-value=0.0034  Score=45.29  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ...-|+|.|.+|+||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.08  E-value=0.0037  Score=45.63  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999988643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.07  E-value=0.0035  Score=45.99  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..-|+|.|.+||||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            467899999999999999988653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.06  E-value=0.0035  Score=45.23  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0028  Score=51.49  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -.++|+|+.|||||||++.|.+..
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc
Confidence            368999999999999999987653

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.04  E-value=0.0042  Score=45.47  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHh
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      .+.+++.|+|+|||||||+...|.
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHH
Confidence            467899999999999999998874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.04  E-value=0.0036  Score=45.87  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4689999999999999999874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.02  E-value=0.0036  Score=49.09  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .--++++|+.|+||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            44688999999999999998853

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.01  E-value=0.0034  Score=46.65  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      -.|+|+|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998853

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.00  E-value=0.0043  Score=41.88  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3568999999999999999987654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.00  E-value=0.0036  Score=51.02  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             EEEEEEeCCCcccccccc----ccc---c-----ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 IKLQIWDTAGQERFRTIT----TAY---Y-----RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+||+|........    ...   .     ...+-+++|+|+......   ......+....  + ...+|+||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a---l~~ak~f~~~~--~-itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA---VSQAKLFHEAV--G-LTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH---HHHHHHHHHHT--C-CSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH---HHHHHHHHhhc--C-CCEEEEEcCC
Confidence            457889999953221110    011   1     124567889998644221   12223333322  2 2367889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985          132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      -..     ..-.+..+....+.++.++.  +|++++++
T Consensus       450 ~ta-----kgG~~lsi~~~~~~PI~fig--~Ge~vdDL  480 (503)
T 2yhs_A          450 GTA-----KGGVIFSVADQFGIPIRYIG--VGERIEDL  480 (503)
T ss_dssp             GCS-----CCTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             Ccc-----cccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence            521     22345667777888887765  66666543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.99  E-value=0.0045  Score=47.11  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .-|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.94  E-value=0.0041  Score=48.55  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++.|+|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67999999999999999998874

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.93  E-value=0.02  Score=46.18  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=20.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHh
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      .....-|.|+|..++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            3456667799999999999999654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.90  E-value=0.0068  Score=48.58  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...-|+|+|.+||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456889999999999999998753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.89  E-value=0.0037  Score=44.93  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+++.|+||+|||+++.++...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999998888653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.87  E-value=0.0044  Score=48.94  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      -.++|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3678999999999999999875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.83  E-value=0.0059  Score=41.54  Aligned_cols=19  Identities=47%  Similarity=0.635  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027985           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~   36 (216)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3799999999999999974

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.80  E-value=0.0049  Score=46.80  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.+++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.79  E-value=0.0052  Score=44.63  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.78  E-value=0.0054  Score=45.54  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|++.|++|+|||+|++.+...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.76  E-value=0.0052  Score=46.31  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.74  E-value=0.0058  Score=43.81  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      ++|.|++|+|||+|++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.72  E-value=0.0066  Score=46.20  Aligned_cols=25  Identities=24%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+.-+++.|+||+|||+|.+.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4456788899999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.72  E-value=0.0062  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.72  E-value=0.004  Score=46.56  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|+|.|.+||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999988654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.70  E-value=0.0057  Score=46.73  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.|++.|++|+|||+|++.+.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.68  E-value=0.0056  Score=46.15  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.66  E-value=0.006  Score=49.69  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999998853

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.66  E-value=0.0073  Score=44.33  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=21.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .....|+|+|.+||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999988754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.65  E-value=0.006  Score=46.98  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.++|.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999988753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.62  E-value=0.0063  Score=50.40  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.60  E-value=0.0077  Score=43.03  Aligned_cols=26  Identities=38%  Similarity=0.534  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      ...|+|+|++|+|||||...|.....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            35689999999999999999986643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.59  E-value=0.0068  Score=48.89  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      +++|+|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            67899999999999999988764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.57  E-value=0.0085  Score=45.67  Aligned_cols=24  Identities=21%  Similarity=0.526  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999986643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.56  E-value=0.01  Score=44.46  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44568999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.56  E-value=0.0069  Score=50.72  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            58999999999999999987653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.52  E-value=0.0079  Score=42.94  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.0074  Score=50.70  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.51  E-value=0.0078  Score=50.38  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.44  E-value=0.0075  Score=47.25  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.++|.|++|+|||||++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.44  E-value=0.011  Score=46.03  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=19.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ....|+++|++|+||||+.+.|.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            44689999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.44  E-value=0.0084  Score=43.97  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999777653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.41  E-value=0.0089  Score=47.03  Aligned_cols=21  Identities=38%  Similarity=0.487  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      .+ .+|+|+.|+|||||++.++
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHH
Confidence            45 4599999999999999975

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.40  E-value=0.0081  Score=45.83  Aligned_cols=90  Identities=14%  Similarity=0.102  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCccccccc----cccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      +.+.|+||+|.......    ....+.  ..+.+++|+|++..  ...+.++...+..   -+ ..-+|+||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence            47899999996543211    111222  35678889987642  2333333222221   11 2356679999632   


Q ss_pred             CCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985          138 AVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                        ....+..+....+.++.+++  .|+++
T Consensus       254 --~~g~~~~~~~~~~~pi~~i~--~ge~v  278 (296)
T 2px0_A          254 --SLGSVFNILAESKIGVGFMT--NGQNV  278 (296)
T ss_dssp             --CCHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred             --chhHHHHHHHHHCcCEEEEE--CCCCC
Confidence              12255566677777766654  34443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.39  E-value=0.014  Score=44.96  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|++.|+||+|||+|++.+...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3467999999999999999998654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.38  E-value=0.0092  Score=50.15  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57899999999999999998753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.37  E-value=0.009  Score=45.41  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.35  E-value=0.0089  Score=49.53  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .++|+|+.|+|||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            368999999999999999987543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.34  E-value=0.0096  Score=45.64  Aligned_cols=92  Identities=21%  Similarity=0.141  Sum_probs=51.6

Q ss_pred             EEEEEEeCCCcccccccc-------cc-----ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 IKLQIWDTAGQERFRTIT-------TA-----YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~-------~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+|+||........       ..     .....+.+++|+|+...  .+.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            468999999953211100       00     11347788999998633  222222 22233221  2 2356779999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985          132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ...     ..-.+..+....+.++.+++  .|+.+++
T Consensus       261 ~~~-----~gG~~l~~~~~~~~Pi~~i~--~Ge~~~d  290 (306)
T 1vma_A          261 GTA-----KGGITLAIARELGIPIKFIG--VGEKAED  290 (306)
T ss_dssp             GCS-----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             Ccc-----chHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence            532     22246778888898888886  4555544

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.33  E-value=0.0075  Score=46.95  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988763

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.32  E-value=0.0092  Score=46.07  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .-.|++.|+||+|||+|++.+....
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4579999999999999999987643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.31  E-value=0.0094  Score=46.84  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|.|++|+|||||++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999987543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.30  E-value=0.0088  Score=46.73  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999988653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.29  E-value=0.01  Score=45.74  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.28  E-value=0.0099  Score=49.97  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .++|+|+.|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.28  E-value=0.011  Score=49.00  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.25  E-value=0.01  Score=45.24  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.++++|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999988654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.25  E-value=0.0099  Score=46.14  Aligned_cols=22  Identities=27%  Similarity=0.606  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      +++.|++|+||||+++.+.+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999987653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.24  E-value=0.01  Score=42.86  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.23  E-value=0.0079  Score=50.52  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+--
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            67999999999999999887643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.011  Score=47.53  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+-.|++.|+||+|||+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.20  E-value=0.013  Score=41.18  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      ++|+|.++||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.18  E-value=0.014  Score=46.89  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..+-.|++.|+||+|||+|++++.+.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            34567999999999999999999764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.17  E-value=0.025  Score=40.18  Aligned_cols=85  Identities=14%  Similarity=0.051  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPT  141 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~  141 (216)
                      +.+.|+|+|+..  .......+..+|.+|+++..+.. + ..+...+..+....  ..+.++.+|+|+.|...   . ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~---~-~~  147 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA---T-ML  147 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE---E-EE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc---h-HH
Confidence            678999999865  33344566779999999987653 3 56666666665432  23467789999999522   1 22


Q ss_pred             HHHHHHHHHhCCcEE
Q 027985          142 AKGQELADEYGIKFF  156 (216)
Q Consensus       142 ~~~~~~~~~~~~~~~  156 (216)
                      .+...+.+..+.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            334455555554433

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.16  E-value=0.012  Score=45.77  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .-|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.15  E-value=0.007  Score=50.62  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+--
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999777643

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.14  E-value=0.014  Score=42.94  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-|+|.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.012  Score=47.34  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..+-.|++.|+||+|||+|++++.+.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.10  E-value=0.012  Score=49.42  Aligned_cols=23  Identities=26%  Similarity=0.561  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      ++|+|+.|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999987543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.09  E-value=0.014  Score=45.25  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -|+|+|++|||||||...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.08  E-value=0.017  Score=42.12  Aligned_cols=26  Identities=15%  Similarity=0.091  Sum_probs=21.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .....-|+|.|.+|+||||+++.|..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            33457789999999999999998754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.08  E-value=0.06  Score=41.28  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      +++.|++|+|||++++.+....
T Consensus        51 ~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHT
T ss_pred             EEeeCcCCCCHHHHHHHHHHHh
Confidence            4556679999999999986543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.07  E-value=0.0091  Score=50.05  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.07  E-value=0.012  Score=45.59  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.06  E-value=0.0055  Score=45.79  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.05  E-value=0.011  Score=46.42  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.++|.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999988753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.04  E-value=0.014  Score=44.72  Aligned_cols=24  Identities=42%  Similarity=0.634  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999887653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.01  E-value=0.015  Score=43.40  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ..|+|.|++|+|||+|++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            568999999999999999987654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.99  E-value=0.015  Score=44.60  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-|+|+|++|||||||...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35789999999999999998654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.97  E-value=0.012  Score=45.92  Aligned_cols=23  Identities=22%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.++|.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.97  E-value=0.016  Score=41.54  Aligned_cols=19  Identities=47%  Similarity=0.635  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027985           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~   36 (216)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            3689999999999999873

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.96  E-value=0.017  Score=40.23  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            468999999999999999998754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.95  E-value=0.014  Score=46.36  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+-.|++.|+||+|||.|++++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3457999999999999999999764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.92  E-value=0.014  Score=45.64  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.|++.|++|+|||+|++.+...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999998754

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.90  E-value=0.15  Score=37.23  Aligned_cols=87  Identities=10%  Similarity=0.071  Sum_probs=58.2

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  143 (216)
                      +.+.|+|+|+...  ......+..+|.+|+++..+ ..++..+...++.+.........+.+|+|+.+...   ....  
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~---~~~~--  190 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS---RITS--  190 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT---TSCH--
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC---CCCH--
Confidence            5789999998542  23445677899999998775 57777777777777655433456788999998532   2233  


Q ss_pred             HHHHHHHhCCcEEEEe
Q 027985          144 GQELADEYGIKFFETS  159 (216)
Q Consensus       144 ~~~~~~~~~~~~~~~S  159 (216)
                       +.+.+..+.+++..-
T Consensus       191 -~~~~~~~~~~v~~~i  205 (245)
T 3ea0_A          191 -DEIEKVIGRPISKRI  205 (245)
T ss_dssp             -HHHHHHHTSCEEEEE
T ss_pred             -HHHHHHhCCCeEEEC
Confidence             344455677666553

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.90  E-value=0.0092  Score=49.55  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|+|+|.+|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3467899999999999999998654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.89  E-value=0.014  Score=47.84  Aligned_cols=23  Identities=35%  Similarity=0.627  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .|+++|++|+|||+|++.+.+..
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999987643

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.88  E-value=0.014  Score=47.07  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.++|.|++|+|||+|++.+.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.88  E-value=0.015  Score=44.94  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..|+|.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45899999999999999998654

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=94.85  E-value=0.19  Score=36.35  Aligned_cols=41  Identities=17%  Similarity=0.234  Sum_probs=24.7

Q ss_pred             EEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           92 LLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        92 i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      ++.+|-  -+.+. .+...+..+..   .++|+++.+-..|-.....
T Consensus       104 vV~IDE--aQFf~~~~v~~l~~la~---~gi~Vi~~GLd~DF~~~~F  145 (219)
T 3e2i_A          104 VIGIDE--VQFFDDEIVSIVEKLSA---DGHRVIVAGLDMDFRGEPF  145 (219)
T ss_dssp             EEEECC--GGGSCTHHHHHHHHHHH---TTCEEEEEEESBCTTSCBC
T ss_pred             EEEEec--hhcCCHHHHHHHHHHHH---CCCEEEEeecccccccCCC
Confidence            455554  34444 34444555543   3799999999999754333

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.83  E-value=0.013  Score=42.87  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=17.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..-|+|.|.+||||||+++.|..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998854

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.82  E-value=0.021  Score=41.32  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..-|+|.|.+|+||||+++.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            46789999999999999998853

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.82  E-value=0.016  Score=45.41  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|+|.|++|+|||+|++.+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.82  E-value=0.016  Score=47.26  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.|+++|++|+|||+|++.+.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-64
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-59
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	9e-58
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-57
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-57
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-55
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-55
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-54
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-53
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-52
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-51
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-49
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-46
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-45
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-43
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-42
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-42
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-42
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-40
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-40
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	8e-40
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	9e-40
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-39
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-39
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	7e-39
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	5e-38
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-37
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-37
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-37
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-36
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-36
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-36
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	6e-36
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-35
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-35
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	6e-35
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-34
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-34
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-31
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-31
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-30
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-29
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-29
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	8e-29
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-28
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-27
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-27
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-27
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-25
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-24
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-21
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-21
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-20
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	8e-16
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	8e-11
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-10
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	5e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-07
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	5e-07
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-06
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	5e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	4e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	6e-05
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	2e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  193 bits (492), Expect = 8e-64
 Identities = 120/170 (70%), Positives = 151/170 (88%), Gaps = 1/170 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL KLLLIGDSGVGK+C+L RFS+D+F ++FI+TIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNW+RNI++HA+ +V K+++GNK D
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +++ KR V   +G++LA +YGIKF ETSAK N NVE  FF++AR+IK ++
Sbjct: 123 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  181 bits (460), Expect = 3e-59
 Identities = 101/167 (60%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           ++K+LLIGDSGVGKSCLL+RF +D F  SFITTIGIDFKI+T++++GK++KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + +++HA D    +LVGNK+DM+ 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 120

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
             R V   +G+ LA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (451), Expect = 9e-58
 Identities = 78/167 (46%), Positives = 118/167 (70%), Gaps = 1/167 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L K++LIG++GVGK+CL+ RF+   F      TIG+DF I+T+E++G+++KLQIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R I+Q+A++ V  +LVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           D    +R V   + +E ++   + + ETSAK + NVE++F  +A  +
Sbjct: 121 D-LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  178 bits (451), Expect = 2e-57
 Identities = 103/182 (56%), Positives = 138/182 (75%), Gaps = 1/182 (0%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           ++YDYL KLLLIG+SGVGKSCLLLRFSDD++T  +I+TIG+DFKI+T+ELDGK +KLQIW
Sbjct: 1   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ ID++A   V K+LVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 120

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE 189
               + KR V     +E AD   + F ETSA  + NVE  F ++AR+IK+ + + +    
Sbjct: 121 -CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 190 PQ 191
            Q
Sbjct: 180 TQ 181

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  176 bits (447), Expect = 4e-57
 Identities = 86/170 (50%), Positives = 127/170 (74%), Gaps = 2/170 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIW 69
            YD   K++L+GDSGVGK+CLL+RF D +F   +FI+T+GIDF+ + +++DG ++KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129
           DTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
                 +R V    G++LA EYG+ F ETSAKT  NV+  F +IA+E+K+
Sbjct: 122 -VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (432), Expect = 6e-55
 Identities = 80/166 (48%), Positives = 113/166 (68%), Gaps = 1/166 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y Y+ K ++IGD GVGKSCLL +F++  F      TIG++F  R IE+ G++IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +       N   IL+GNKAD
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           + E++R V   + ++ A+E G+ F E SAKT  NVE  F   A++I
Sbjct: 121 L-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  170 bits (432), Expect = 8e-55
 Identities = 93/170 (54%), Positives = 130/170 (76%), Gaps = 1/170 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++DY+ K+L+IG+S VGK+  L R++DDSFT +F++T+GIDFK++TI  + KRIKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130
           TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I  ++ DN   +LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           DM E +R V + +G++LAD  G +FFE SAK N NV+Q F  +   I ++
Sbjct: 121 DM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (428), Expect = 4e-54
 Identities = 85/170 (50%), Positives = 119/170 (70%), Gaps = 1/170 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL K++LIGDSGVGKS LL RF+ + F     +TIG++F  R+I++DGK IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           +    RAVPT + +  A++  + F ETSA  + NVE+ F +I  EI + +
Sbjct: 121 LRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 3e-53
 Identities = 80/181 (44%), Positives = 115/181 (63%), Gaps = 10/181 (5%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL----------D 60
           DYDYLIKLL +GDSGVGK+  L R++D+ F   FITT+GIDF+ + +             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
             ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNWM  +  +A   
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
              I++         +R V   + +ELAD+YGI +FETSA T  NVE+   ++   I +R
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

Query: 181 L 181
           +
Sbjct: 181 M 181

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (417), Expect = 1e-52
 Identities = 77/170 (45%), Positives = 107/170 (62%), Gaps = 1/170 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD+L K L+IG++G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
           AGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    A+ N+  IL GNK  
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK-K 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
             ++ R V   +    A E  + F ETSA T  NVE+ F   AR+I  ++
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (412), Expect = 1e-51
 Identities = 80/178 (44%), Positives = 113/178 (63%), Gaps = 5/178 (2%)

Query: 11  DYDYL--IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
           D D L  +K+L+IG+SGVGKS LLLRF+DD+F      TIG+DFK++TI +DG + KL I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128
           WDTAGQERFRT+T +YYRGA G++LVYDVT   +F  + NW+  ++ +   N    ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 129 KADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR--LVES 184
              +D+  R V   +G + A ++ + F E SAKT   V+  F  +  +I Q   L ES
Sbjct: 121 N-KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES 177

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (397), Expect = 2e-49
 Identities = 87/168 (51%), Positives = 124/168 (73%), Gaps = 1/168 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133
           QE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH++ N+  +L+GNK+D+ 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL- 120

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           ES+R V   +G+  A E+G+ F ETSAKT  NVE+ F + A+EI +++
Sbjct: 121 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 8e-46
 Identities = 62/166 (37%), Positives = 101/166 (60%), Gaps = 1/166 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           Y  K++L+G+  VGK+ L+LR+ ++ F    ITT+G  F  + + + GKR+ L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133
           QERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK    
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK-IDL 120

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           E +R V   + +  A+  G K + TSAK N  +E++F  + + + +
Sbjct: 121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (370), Expect = 1e-45
 Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +G+  VGK+ L+ RF  DSF  ++  TIGIDF  +T+ L+ + I+LQ+WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+ +SF     W+ ++      +V  +LVGNK D+   K
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADK 120

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
           R V   +G+  A E  + F ETSAK  +NV+Q+F  +A  +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 2e-43
 Identities = 66/173 (38%), Positives = 95/173 (54%), Gaps = 3/173 (1%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           A    L K++L+GD GVGKS L+ R+  + F T    TIG++F  + +E+DG  + +QIW
Sbjct: 1   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVG 127
           DTAGQERFR++ T +YRG+   LL + V D  SF N+ NW +    +A   +  +   V 
Sbjct: 61  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 128 NKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQ 179
               +D S+R V T + Q    + G   +FETSAK   NV   F    R +  
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 1e-42
 Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 3/165 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G  GVGKS L ++F   +F   +  TI  DF  + IE+D     L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDE 134
           +F ++   Y +   G +LVY + ++ SF +I+     I +    + V  ILVGNK D++ 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
            +  V +++G+ LA+E+G  F ETSAK+   V+++F  I R++  
Sbjct: 123 ERE-VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 2e-42
 Identities = 70/163 (42%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+G+S VGKS L+LRF    F     +TIG  F  +T+ LD   +K +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           + ++   YYRGA   ++VYD+T+E SF   +NW++ + + A+ N+   L GNK     +K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK-ADLANK 126

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           RAV   + Q  AD+  + F ETSAKT+ NV ++F +IA+++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  139 bits (349), Expect = 2e-42
 Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LRF  + F  +   TIG  F  + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + A+ ++   LVGNK D   +
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             +R V   +G++LA+E G+ FFETSAKT  NV  VF  I  +I  +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 6e-42
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 19/189 (10%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD 60
           MA  P         ++K +++GD  VGK+CLL+ +++D+F   ++ T+  D    ++ + 
Sbjct: 1   MAHGP------GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVG 53

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN 120
           GK+  L ++DTAGQE +  +    Y      L+ + V + +SF N++       +  A N
Sbjct: 54  GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 113

Query: 121 VNKILVGNKADMDESKR-----------AVPTAKGQELADEYG-IKFFETSAKTNFNVEQ 168
           V  +L+G + D+ +  +            +   +GQ+LA E G   + E SA T   ++ 
Sbjct: 114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173

Query: 169 VFFSIAREI 177
           VF      I
Sbjct: 174 VFDEAIIAI 182

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 2e-40
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++   + F   +  TI  D   + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I +    D+V  +LVGNK D+   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
                + + Q+LA  YGI + ETSAKT   VE  F+++ REI+Q
Sbjct: 124 TV--ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  132 bits (333), Expect = 6e-40
 Identities = 62/167 (37%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+F  D F   +  T   D   + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D++
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           + ++ V   + +  AD++ + + ETSAKT  NV++VFF + REI+ R
Sbjct: 123 DKRQ-VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 8e-40
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++ ++F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
            +  +    Y      L+ + +   +SF N+R       +H   N   ILVG K D+ + 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 136 KRAV-----------PTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQ 179
           K  +              +G  +A E G +K+ E SA T   ++ VF    R +  
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 9e-40
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 13/184 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++ + F + ++ T+  D    T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
            +  +    Y      L+ + V   SSF N++        H       +LVG + D+ + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 136 KRAV-----------PTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183
              +                ++LA +   +K+ E SA T   ++ VF        +    
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 184 SDSK 187
             S+
Sbjct: 183 KKSR 186

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 3e-39
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
               KL+++G  GVGKS L ++F    F + +      D   +   +DG   +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTA 62

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKAD 131
           GQE F  +   Y R   G LLV+ + D  SFN +      I +    D+   +LVGNKAD
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           + ES+R VP ++       + + +FE SAK   NV++ F  + R +++ 
Sbjct: 123 L-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (326), Expect = 6e-39
 Identities = 74/172 (43%), Positives = 110/172 (63%), Gaps = 6/172 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAG 73
           ++K++++GDSGVGK+ L+ R+ +D ++  +  TIG DF  + + +DG ++  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK----ILVGNK 129
           QERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA  N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 130 ADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180
            D +ESK+ V     QELA   G I  F TSAK   NV+  F  IAR   Q+
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  130 bits (327), Expect = 7e-39
 Identities = 67/184 (36%), Positives = 110/184 (59%), Gaps = 6/184 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       A+    +N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAE- 189
           D++  + A   A       +  I +FETSAK   NVEQ F +IAR   ++  E +   E 
Sbjct: 122 DLENRQVATKRA-QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 180

Query: 190 PQTI 193
           P+ I
Sbjct: 181 PEPI 184

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 5e-38
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 1/163 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ RF +DSF  +   TIG  F  +T++   +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +  +     ++ AD     F ETSAK   N+ ++F  I+R I 
Sbjct: 125 REVME-RDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 6/165 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  RF    F      TIG+DF+ R +++DG+RIK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 75  ERF-RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADM 132
           ERF +++   YYR    ++ VYD+T+ +SF+++  W+    QH  A+++ +ILVGNK D+
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKT---NFNVEQVFFSIA 174
                 VPT   Q+ AD + +  FETSAK    N +VE +F ++A
Sbjct: 122 RS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 2e-37
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++G  GVGKS L ++F    F   +  TI  D   + +E+D ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDE 134
           +F  +   Y +   G  LVY +T +S+FN++++    I +    ++V  ILVGNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
            +                  F E+SAK+  NV ++F+ + R+I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 2e-37
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++GD   GK+CLL+  S D F   ++ T+  +  +  IE+DGK+++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
            +  +    Y     IL+ + +    S  NI        +H   NV  ILVGNK D+   
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 136 KRA-----------VPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQ 179
           +             V   +G+++A+  G   + E SAKT   V +VF    R   Q
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (311), Expect = 1e-36
 Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 2/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++G+  VGKS ++ R+    FT  +  TIG+DF  R I+++ + ++L +WDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
            F  IT AYYRGA   +LV+  TD  SF  I +W   +      ++   LV NK D+ + 
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDD 121

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
              +   + + LA    ++F+ TS K + NV +VF  +A +  Q
Sbjct: 122 SC-IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-36
 Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L+++G  GVGKS L ++F    F T +  TI  D   +   +D +  +L I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMR-NIDQHAADNVNKILVGNKADMDES 135
           F  +   Y R   G LLV+ VTD  SF  I  + R  +     D    IL+GNKAD+D  
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH- 124

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +R V   +GQ+LA +  + + E SAK   NV+Q F  + R I++ 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  122 bits (306), Expect = 6e-36
 Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 8/165 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T                ++ K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE- 134
           + R +   Y++   G++ V D  D    N  R  +  +          +LV         
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 135 --SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
             +   +    G             T A +   + +    ++ ++
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (306), Expect = 6e-36
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD GVGKS L ++F    F   +  TI  D  ++  E+D +   L + DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           F  +   Y R   G L+VY VTD++SF ++  + + I +        +++          
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124

Query: 137 RAVPTAKGQELADEYGIKFFETSAKT-NFNVEQVFFSIAREIKQR 180
           R V   +G+E+A +Y I + ETSAK    NV++ F  + R I+Q+
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (306), Expect = 1e-35
 Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 14/178 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++GDS  GK+ LL  F+ D F  +++ T+  +    + E+D +RI+L +WDT+G  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSP 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135
            +  +    Y  +  +L+ +D++   + +++    +   Q    N   +LVG K+D+   
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121

Query: 136 -----------KRAVPTAKGQELADEYGI-KFFETSAKTNFN-VEQVFFSIAREIKQR 180
                      +  V   +G  +A + G   + E SA  + N V  +F         +
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            ++ + G  GVGKS L+LRF   +F  S+I T+   ++      D     LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSH 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK--ILVGNKADMD 133
           +F  +           +LVY +T   S   ++     I +   D  +   +LVGNK   +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK-CDE 120

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLV 182
              R V +++ + LA  +   F ETSAK N NV+++F  +    K+R V
Sbjct: 121 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 169

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 5/167 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KL + G +GVGKS L++RF    F   +  T+   ++ +    D + + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDT-AGQ 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMR-NIDQHAADNVNKILVGNKADMDE 134
                   + R   G +LVYD+TD  SF  +        +     NV  ILVGNKAD+D 
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTN-FNVEQVFFSIAREIKQR 180
             R V T +G++LA E    F+E SA T   N+ ++F+ + RE+++R
Sbjct: 121 -SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +       T+ I T+G + +  T     K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQD 67

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKAD--M 132
           + R +   YY G  G++ V D  D    +  R  +  I       +   ++  NK D   
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
                 +    G     +       + A +   + +    +    K
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  119 bits (299), Expect = 1e-34
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R       T+  T IG + +     L  K +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDE 134
             R     YY     ++ V D TD+   +     +  + Q     +   ++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 135 --SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             S   V          +       +SA     + +    +   IK+ 
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 8/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS +    +  T      +I          +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN-----NTRFLMWDIGGQE 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADM-- 132
             R+    YY     +++V D TD    +  R  +  +  H        ++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
             +   +          ++        A T   + Q    +   +K
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 7e-31
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K+ ++G   VGKS L ++F +  F  S+  TI  +   + I ++G+   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDE 134
            +      Y     G +LVY VT   SF  I+    + +D      +  +LVGNK D+  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
            +  +   +G+ LA+ +   F E+SAK N     VF  I  E +
Sbjct: 124 ERV-ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 8/174 (4%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKL 66
           + ++  D  +++LL+G    GK+ LL + + +  +     T G + K        +  KL
Sbjct: 8   KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQS----QGFKL 62

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKIL 125
            +WD  GQ + R    +Y+     ++ V D  D   F      +  + +      V  ++
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122

Query: 126 VGNKADM--DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177
             NK D+        +          +   +    SA T   V+     + + +
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+LL+G  GVGKS L   F                   R+I +DG+   L ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDES 135
            R +           ++VY VTD+ SF         + +    D+V  ILVGNK+D+   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR- 119

Query: 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSK 187
            R V   +G+  A  +  KF ETSA  + NV+ +F  + R+I+ R    DSK
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR---RDSK 168

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 4/163 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD G GK+  + R     F   ++ T+G++        +   IK  +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136
           F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+   K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDI---K 120

Query: 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
                AK      +  +++++ SAK+N+N E+ F  +AR++  
Sbjct: 121 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  105 bits (261), Expect = 3e-29
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++LL++G    GK+ +L +F+ +        TI          L+ +  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDE 134
             R+    Y+    G++ V D  D     + +  ++++           ++  NK D+  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 135 --SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             S  A+  A   +    +  +    SA T  ++      +  +I  R
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 8e-29
 Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 12/174 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L ++GD+  GKS L+ RF   S+          +   + + +DG+   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVL--EKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD---NVNKILVGNKADM 132
             +     +   A  ++ V+ + DE+SF  +      +     +    +   LVG +  +
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 133 -DESKRAVPTAKGQELA-DEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
              S R V  A+ + L  D     ++ET A    NV++VF  +A+++     + 
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-28
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 4/171 (2%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           +   +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +DG+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 72  A-GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNK 129
              +     +     +     L+VY +TD +SF       ++       +++  ILVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 130 ADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           +D+   +  V  ++G+  A  +  KF ETSA    NV+++F  I R+++ R
Sbjct: 121 SDLVRCRE-VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R       T                +  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDE 134
             R     YY     ++ V D  D       ++ +  + +        + +  NK DM++
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 135 --SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
             +   +  + G     +   + F+TSA     +++    +   +K R
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KLL +G    GK+ LL    +D        T+   +   + EL    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVG--------- 127
            R +   Y+    GI+ + D  D   F+  R  +  +   A       ++          
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 128 -NKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175
            ++A++  +   + T   Q +  +  ++ F  S        + F  +++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score =  100 bits (248), Expect = 2e-27
 Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 7/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L L+G    GK+  +   +   F    I T          ++    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDE 134
           RFR++   Y RG   I+ + D  D+      +N + N+        +  +++GNK D+  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 135 S--KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178
           +  ++ +          +  I  +  S K   N++     + +  K
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.4 bits (239), Expect = 2e-25
 Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 19/183 (10%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y    +LLL+G    GKS ++ +          + T GI       +    ++   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFET----KFQVDKVNFHMFDV 54

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-----------DN 120
            GQ   R      +     I+ V   +  +      N    + +                
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 121 VNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           ++ IL  NK D+   K     +K ++   E+        A      +         I+  
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 181 LVE 183
            + 
Sbjct: 175 FLR 177

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.8 bits (232), Expect = 1e-24
 Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 44/202 (21%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KLLL+G    GKS  + +      +   + T GI         D + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEY----PFDLQSVIFRMVDVGGQR 56

Query: 76  RFRTITTAYYRGAMGILLVYDVTD-----------ESSFNNIRNWMRNIDQHAADNVNKI 124
             R      +     I+ +  +++                +   +   I      N + I
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 125 LVGNKADMDESKRAVPTAKGQELADEYG--------------------------IKFFET 158
           L  NK      ++ + +       +  G                          I    T
Sbjct: 117 LFLNK-KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 159 SAKTNFNVEQVFFSIAREIKQR 180
            A    N+  VF ++   I Q 
Sbjct: 176 CATDTENIRFVFAAVKDTILQL 197

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.0 bits (209), Expect = 3e-21
 Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 47/202 (23%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KLLL+G    GKS ++ +        + I      FK             +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-----------WMRNIDQHAADNVNKI 124
             R      + G   I+    ++D                    +    +     + + I
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 125 LVGNKADMDESKRAVPTAKGQELADEYG--------------------------IKFFET 158
           L  NK      ++   +       +  G                          I    T
Sbjct: 114 LFLNK-KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 159 SAKTNFNVEQVFFSIAREIKQR 180
            A    NV+ VF ++   I + 
Sbjct: 173 CATDTKNVQFVFDAVTDVIIKN 194

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (209), Expect = 3e-21
 Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 44/203 (21%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K+LL+G    GKS  L +            T GI       + + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQ 54

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRN-----------IDQHAADNVNK 123
              R      +     IL +   ++                        ++     NV+ 
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 124 ILVGNKADMDESKRAVPTAKGQ-----------ELADEYGIKFFE--------------- 157
           IL  NK D+ E K  V + K                 ++ ++ F                
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 158 TSAKTNFNVEQVFFSIAREIKQR 180
           T+A    N+  VF  +   I   
Sbjct: 175 TTAINTENIRLVFRDVKDTILHD 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 20/181 (11%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y    KL+ +G    GK+ LL    DD           +      + + G          
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELTIAGMTFTTFDLGG 66

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-MRNIDQHAADNVNKILVGNKA 130
               + R +   Y     GI+ + D  D       +      +      NV  +++GNK 
Sbjct: 67  --HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 131 DMDE-----------SKRAVPTAKGQELADEYG---IKFFETSAKTNFNVEQVFFSIARE 176
           D  E                 T KG     E     ++ F  S        + F  +A+ 
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 177 I 177
           I
Sbjct: 185 I 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (172), Expect = 8e-16
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
            +L +G    GK+ L +R     +  +  T+I     I  +  +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 77  FRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADM 132
              +   +   A  ++ V D    +    ++  ++  +   +    ++ + ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 133 DESK 136
             +K
Sbjct: 121 AMAK 124

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 56.3 bits (134), Expect = 8e-11
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 20/173 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFS-DDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT--- 71
           +K+++ G    GKS LL   +  ++   + I     D     I +DG  + +        
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 72  ---AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128
                +             A  +L + D T   + +                +   +V N
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRN 120

Query: 129 KADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181
           KAD+              +++  G      SA+T   V+ +       +KQ +
Sbjct: 121 KADITGET--------LGMSEVNGHALIRLSARTGEGVDVLR----NHLKQSM 161

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 22/179 (12%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           Y   +++ G    GK+ LL   + DS       T+     +   + DG  +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 74  QERFRTITTAYY-----RGAMGILLVYDVTDESSFNNIRNWMRNI----DQHAADNVNKI 124
             + R   + Y           I +V    D         ++ +I    +    + ++ +
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 125 LVGNKADMDESK--RAVPTAKGQEL-----ADEYGIKFFETSAKTNFNVEQVFFSIARE 176
           +  NK+++  ++    +  A   E+       +  +   E         E     +   
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 174

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 8/177 (4%)

Query: 20  LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----E 75
           L+G    GKS LL   +      +      +   +  +E+  +  +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-RFTLADIPGIIEGAS 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNID--QHAADNVNKILVGNKADMD 133
             + +   + R      ++  V D +            +   +    + +  +     +D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190
             +     A    LA E G+     SA T   +  +  ++   ++        K  P
Sbjct: 125 LLEEEAVKALADALARE-GLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVP 180

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSD-DSFTTSFITTIGIDFKIRTIELDGKR--------IKL 66
           ++++++G   VGKS LL R  + D    + I     D     I + G          ++ 
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILV 126
           +  D   +      T      A  +L V D +      + +   R  ++     +NK+ V
Sbjct: 61  ETNDLVERLGIER-TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 119

Query: 127 GNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176
             K + +E K  + T               + SA     +E++  SI RE
Sbjct: 120 VEKINEEEIKNKLGT----------DRHMVKISALKGEGLEKLEESIYRE 159

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (108), Expect = 5e-07
 Identities = 18/183 (9%), Positives = 47/183 (25%), Gaps = 9/183 (4%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFS-------DDSFTTSFITTIGIDFK 53
           + +AP       D  I++   G S  GKS  L   +                     +  
Sbjct: 2   VMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA 61

Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI 113
                +D             + +++     Y      +  +  + D        +     
Sbjct: 62  DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE 121

Query: 114 DQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFF 171
               ++    +L+     +    R       +E    +   ++    S+     V+++  
Sbjct: 122 WAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ 181

Query: 172 SIA 174
            + 
Sbjct: 182 KLD 184

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 1   MATAPARARADYDYLIKLLLIGDSGVGKSCLL--LRFSDDSFTTSFITTIGIDFKIRTIE 58
           + +A    +     L ++ L G S VGKS  +  L    +   TS             I 
Sbjct: 9   VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN 68

Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI----LLVYDVTDESSFNNIRNWMRNID 114
            +   + +  +  A   +                   L       +       + ++  +
Sbjct: 69  DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYE 128

Query: 115 QHAADNVNKILVGNKADMDESKRAVPTAKG--QELADEYGIKFFETSAKTNFNVEQVFFS 172
                 +  I++  KAD     +    AK   Q L  +   +    S++T    ++ + +
Sbjct: 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGA 188

Query: 173 IAREIKQ 179
           I + I +
Sbjct: 189 IKKMINR 195

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 28/180 (15%), Positives = 47/180 (26%), Gaps = 19/180 (10%)

Query: 20  LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
             G S VGKS L+ R +           +         +              G  +   
Sbjct: 5   FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64

Query: 80  ITTAYYRGAM---------GILLVYDVTDESSFNNIRNWMRNIDQH-------AADNVNK 123
                                +LV D                I             ++  
Sbjct: 65  ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124

Query: 124 ILVGNKADMDESKRAVPTAKGQELA---DEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180
           I+  NK D  ++ + V     ++      E    F   SAK   N+E++   I   I++R
Sbjct: 125 IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 20  LIGDSGVGKSCLLLRF--------SDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           ++G   VGKS L  +          D+   T       +++  +T +L            
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
              ++ + +T    R A  +L V D     +  +               +      NKA+
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA----NKAE 120

Query: 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVESD 185
                      +   L      +    SA+ N N++ +  +I ++++++ ++ +
Sbjct: 121 NLREFEREVKPELYSLGFG---EPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.2 bits (100), Expect = 5e-06
 Identities = 17/167 (10%), Positives = 41/167 (24%), Gaps = 6/167 (3%)

Query: 20  LIGDSGVGKSCLLLRF--SDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           ++G   VGKS LL        +  +    T     +    E   + + +           
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA 69

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137
                          +   V      +        + +     V K+ +    +  ++ +
Sbjct: 70  LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129

Query: 138 AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
               A           +    SA     V ++      ++   + E 
Sbjct: 130 YPEEAMKAYHELLPEAEPRMLSALDERQVAELK----ADLLALMPEG 172

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 11/175 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDS-----------FTTSFITTIGIDFKIRTIELDGKRI 64
           IK+ ++G   VGKS L     +                          K   ++  G R 
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI 124
           K ++     ++            A  +++V D T   +  + R       +  A  V   
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 125 LVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
                   ++          ++L          TSA   +N++++  ++      
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 19/163 (11%), Positives = 40/163 (24%), Gaps = 10/163 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTI--ELDGKRIKLQIWDTAG 73
           + + + G++G GKS  +                G+                 +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 74  QERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131
                     Y              ++      N  +  + I            V  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 173

Query: 132 MDESKRAVPTAKG---QELADEYGIKFFETSAKTNFNVEQVFF 171
            D +  A    +    +++  +  +    T  +       +F 
Sbjct: 174 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 216

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 11/170 (6%)

Query: 20  LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-----AGQ 74
           ++G   VGKS LL +      + +         +I  I  +G    + +          +
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134
              R +  A       + LV  V + + +      + N  +        IL  NK D  +
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREG--KAPVILAVNKVDNVQ 127

Query: 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES 184
            K  +        +    +     SA+T  NV+ +       +++ L E+
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA----AIVRKHLPEA 173

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 34/171 (19%), Positives = 53/171 (30%), Gaps = 14/171 (8%)

Query: 20  LIGDSGVGKSCLLLRFS-------DDSFTTSFITT----IGIDFKIRTIELDGKRIKLQI 68
           L+G   VGKS LL   S       D  FTT                   +L G       
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 65

Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128
               G +  R I        +  +   +  D        N   +          +I+V N
Sbjct: 66  GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 125

Query: 129 KADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179
           K DM E+   +   K +          F  SA T   + ++ F +A +++ 
Sbjct: 126 KMDMPEAAENLEAFKEKL---TDDYPVFPISAVTREGLRELLFEVANQLEN 173

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 2/145 (1%)

Query: 36  SDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95
            +         T        + +      ++   D  G E       +      G +LV 
Sbjct: 58  CESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 117

Query: 96  DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--I 153
              +       R     +      N+  +         E   +      Q     +   +
Sbjct: 118 AANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 177

Query: 154 KFFETSAKTNFNVEQVFFSIAREIK 178
                SA    N++ +   I   IK
Sbjct: 178 PIIPVSALHKINIDSLIEGIEEYIK 202

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 10/129 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLR-FSDDSFTTSFITTIGIDFKIRTIELDGKRI----KLQIWD 70
           + +L++G  GVGKS  +     +   + S   + G    + +    G  +       + +
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 71  TAGQERFRTITTAYYRGAMG---ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK--IL 125
                         +        +L V  +      N  +   + I       +    I+
Sbjct: 93  GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152

Query: 126 VGNKADMDE 134
               A    
Sbjct: 153 ALTHAQFSP 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.74
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.69
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.58
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.54
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.43
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.36
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.35
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.27
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.23
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.18
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.11
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.0
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.72
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.44
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.38
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.27
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.25
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.24
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.2
d1okkd2	207	GTPase domain of the signal recognition particle r	98.14
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.12
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.09
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.02
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.89
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.63
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.57
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.49
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.44
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.41
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.41
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.38
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.38
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.37
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.32
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.32
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.31
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.26
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.25
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.22
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.15
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.14
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.14
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.13
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.12
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.09
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.08
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.06
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.05
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.05
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.03
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.02
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.01
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.99
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.99
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.98
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.95
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.93
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.9
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.9
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.9
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.87
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.87
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.87
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.86
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.86
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.85
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.85
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.81
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.81
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.8
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.73
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.72
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.69
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.69
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.68
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.67
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.67
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.64
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.63
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.62
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.58
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.57
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.53
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.53
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.51
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.5
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.49
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.49
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.43
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.42
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.4
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.36
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.28
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.27
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.27
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.21
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.15
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.13
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.12
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.09
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.02
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.97
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.95
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.91
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.9
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.89
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.69
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.56
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.55
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.5
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.4
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.3
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.23
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.19
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.18
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.13
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.12
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.1
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.07
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.05
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.02
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.02
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.98
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.96
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.82
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.74
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.72
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.66
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.64
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.63
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.57
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.47
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.41
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.39
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.36
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.32
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.31
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.22
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.18
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.01
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.0
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.0
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.97
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.92
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.86
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.83
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.62
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.53
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.08
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.08
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.99
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.78
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.77
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.42
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.29
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.9
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.78
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.62
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.07
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.81
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.78
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.35
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.31
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.28
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.91
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	87.3
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.12
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.67
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.43
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.88
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	85.5
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.48
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.47
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.46
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.99
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.84
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.56
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	82.88
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.72
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.62
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.26
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.98
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.92
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.49
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	81.47
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	80.44

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-37  Score=217.24  Aligned_cols=168  Identities=46%  Similarity=0.865  Sum_probs=155.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            57889999999999999999999999999888889888889999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      ++|+|.+++.++..+..|+..+........|+++|+||+|+.+ ...+..++++.+++..++++++|||++|+||+++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~-~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc-ccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            9999999999999999999999887777899999999999854 556788899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          172 SIAREIKQR  180 (216)
Q Consensus       172 ~l~~~~~~~  180 (216)
                      +|++.+...
T Consensus       161 ~l~~~l~~~  169 (171)
T d2ew1a1         161 DLACRLISE  169 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998887654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.1e-37  Score=216.17  Aligned_cols=167  Identities=55%  Similarity=0.985  Sum_probs=154.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+...+..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            46889999999999999999999999999888899988888888899999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |+|||.++++++..+..|+..+........|+++|+||.|+.+ ...+..++++.+++..++++++|||++|.||+++|+
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc-ccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999999999888877777899999999999854 556788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          172 SIAREIKQ  179 (216)
Q Consensus       172 ~l~~~~~~  179 (216)
                      +|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=214.34  Aligned_cols=164  Identities=38%  Similarity=0.787  Sum_probs=146.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      |.+||+|+|.+|+|||||+++|+++.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999888888899999988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |||++++++++.+..|+..+........|+++|+||+|+.+ .+.+..++++.+++.+++.+++|||++|.||+++|.+|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc-ccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999888776666789999999999965 56788999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027985          174 AREIK  178 (216)
Q Consensus       174 ~~~~~  178 (216)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1z08a1         161 CKRMI  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-36  Score=213.50  Aligned_cols=162  Identities=36%  Similarity=0.683  Sum_probs=149.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      -+||+|+|.+|+|||||+++|+++.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            38999999999999999999999999888899988888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ||++++.+++.+..|+..+..... +.|+++|+||+|+.+ .+.+..++++.+++.++++++++||++|.||+++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCccc-ceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            999999999999999999877655 689999999999865 456888899999999999999999999999999999999


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       160 ~~~l  163 (164)
T d1z2aa1         160 EKHL  163 (164)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-36  Score=212.96  Aligned_cols=170  Identities=71%  Similarity=1.217  Sum_probs=127.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+++|||||+++|+++.+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            57889999999999999999999999999888899998889999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |+|||++++.++..+..|+..+........|+++|+||.|+.. ......+++..++...++.+++|||++|+||+++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh-hcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999877777899999999999854 445667788889999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027985          172 SIAREIKQRLV  182 (216)
Q Consensus       172 ~l~~~~~~~~~  182 (216)
                      +|++.+.++..
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999876653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=212.54  Aligned_cols=168  Identities=33%  Similarity=0.577  Sum_probs=150.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      +...+||+|+|.+|+|||||+++|+++.+...+.++.. +.....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45779999999999999999999999999888777754 55567788899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      |+|||.+++.++..+..|+..+... ...+.|+++|+||+|+.+ ......++++.+++.+++.+++|||++|.||+++|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh-ccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            9999999999999999999988654 345789999999999854 45677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          171 FSIAREIKQRL  181 (216)
Q Consensus       171 ~~l~~~~~~~~  181 (216)
                      +.|++.+.+++
T Consensus       161 ~~l~~~i~k~~  171 (173)
T d2fn4a1         161 EQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=211.36  Aligned_cols=164  Identities=48%  Similarity=0.876  Sum_probs=152.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+|+|.+++|||||+++|++..+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            67899999999999999999999999999888888888888889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||+++.+++..+..|+..+........|+++++||.|+.+ ......++++.+++..++.+++|||++|+||+++|++
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh-hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999888777899999999999854 5567788899999999999999999999999999999


Q ss_pred             HHHHH
Q 027985          173 IAREI  177 (216)
Q Consensus       173 l~~~~  177 (216)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-35  Score=213.69  Aligned_cols=174  Identities=59%  Similarity=1.031  Sum_probs=159.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +.++.+||+|+|.+++|||||+++|+...+...+.++.+.......+.+++..+.+.|||+||++.+..++..+++++++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            56889999999999999999999999999999889998888888888999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +|+|||.++++++..+..|+..+........|+++|+||+|+.+ ...+..++...++...++.++++||++|.||+++|
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc-ccchhHHHHhhhhhccCcceEEEecCcCccHHHHH
Confidence            99999999999999999999988877777899999999999965 56678888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 027985          171 FSIAREIKQRLVESD  185 (216)
Q Consensus       171 ~~l~~~~~~~~~~~~  185 (216)
                      ++|++.+.+......
T Consensus       161 ~~l~~~i~~~~~~~~  175 (194)
T d2bcgy1         161 LTMARQIKESMSQQN  175 (194)
T ss_dssp             HHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHhhhcc
Confidence            999998876554443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=210.67  Aligned_cols=170  Identities=49%  Similarity=0.856  Sum_probs=152.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+|+|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.|||++|++.+...+..+++.++++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            67899999999999999999999999998888888888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||.++++++..+..|+..+..+...++|+++|+||+|+.+ ......+....+....+..+++|||++|+|++++|++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc-cccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            999999999999999999999888877899999999999965 3456677788888889999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027985          173 IAREIKQRLVE  183 (216)
Q Consensus       173 l~~~~~~~~~~  183 (216)
                      |.+.+.+...+
T Consensus       161 l~~~i~~~~~~  171 (175)
T d2f9la1         161 ILTEIYRIVSQ  171 (175)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhhh
Confidence            99998755443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=210.49  Aligned_cols=169  Identities=50%  Similarity=0.921  Sum_probs=151.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      |.+||+|+|++|+|||||+++|++..+...+.++.+...........+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            67899999999999999999999999988888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      |||++++.+++.+..|+..+......++|+++|+||+|+.. ......+++..+++..++.++++||++|.||+++|.+|
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh-hhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999888777899999999999854 45678889999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027985          174 AREIKQRLVE  183 (216)
Q Consensus       174 ~~~~~~~~~~  183 (216)
                      ++.+.++..+
T Consensus       161 ~~~i~~~~~~  170 (173)
T d2a5ja1         161 AKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9998865543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=209.86  Aligned_cols=165  Identities=31%  Similarity=0.404  Sum_probs=132.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|.+..+.... + .+.+.+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-E-AAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCcC-C-eeeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            479999999999999999999988764432 2 23345556778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      ||++++.+++.+..|+..+.... ...+|+++|+||+|+.+ ..++...+++.+++.+++.+++|||++|.||+++|++|
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l  157 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  157 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhh-hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999987654 35689999999999954 55788899999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027985          174 AREIKQRLV  182 (216)
Q Consensus       174 ~~~~~~~~~  182 (216)
                      ++.+..++.
T Consensus       158 ~~~i~~~~~  166 (168)
T d2gjsa1         158 VRQIRLRRD  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            988866543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=210.13  Aligned_cols=168  Identities=46%  Similarity=0.813  Sum_probs=155.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+|+|.+|+|||||+++|..+.+.+.+.++.+.......+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            67899999999999999999999999999998998888888888888999899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||.++++++..+..|+..+......+.|+++|+||+|+.. ......+.+..+++..+++++++||++|+||+++|.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc-hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            999999999999999999999888777899999999999854 5667788889999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027985          173 IAREIKQRL  181 (216)
Q Consensus       173 l~~~~~~~~  181 (216)
                      |.+.+.++.
T Consensus       162 l~~~i~~~~  170 (174)
T d2bmea1         162 CARKILNKI  170 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-35  Score=211.44  Aligned_cols=166  Identities=28%  Similarity=0.486  Sum_probs=144.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....+||+|+|.+|+|||||+++|+.+.+...+.++.. +.....+..++..+.+.+||++|++.+..++..+++++|++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            45789999999999999999999999999888888775 44556677788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHHhC-CcEEEEe
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE-----------SKRAVPTAKGQELADEYG-IKFFETS  159 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~S  159 (216)
                      ++|||++++++++.+..|+.........+.|+++|+||+|+.+           ..+.+..++++.+++.++ +.|++||
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~S  164 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  164 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEec
Confidence            9999999999999887766655555556899999999999864           235678899999999988 6999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027985          160 AKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (216)
                      |++|+||+++|+.+++.+.
T Consensus       165 Ak~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         165 ALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999988763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=209.07  Aligned_cols=161  Identities=41%  Similarity=0.768  Sum_probs=149.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||+++|++..+...+.++.+..........++..+.+.+||++|++.+...+..+++.++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999999999888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR  175 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (216)
                      |.+++.++..+..|+..+......+.|+++|+||.|+.+ ......++++.+++.+++.+++|||++|+||+++|++|++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh-hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999999999999887777899999999999854 4567788999999999999999999999999999999988


Q ss_pred             HH
Q 027985          176 EI  177 (216)
Q Consensus       176 ~~  177 (216)
                      .+
T Consensus       160 ~l  161 (164)
T d1yzqa1         160 AL  161 (164)
T ss_dssp             HS
T ss_pred             hh
Confidence            75

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-35  Score=206.65  Aligned_cols=164  Identities=37%  Similarity=0.579  Sum_probs=147.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .++||+++|.+++|||||+++|+++.+.+.+.++.+. .+...+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceee-ccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            4699999999999999999999999998888887764 445667889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC-CHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQVFF  171 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~  171 (216)
                      |||+++++++..+..|+..+.+.. ....|+++|+||+|+.+ ...+..++++.+++.+++.++++||++++ ||+++|.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhh-hceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999999999987654 45789999999999965 45688899999999999999999999986 9999999


Q ss_pred             HHHHHHHH
Q 027985          172 SIAREIKQ  179 (216)
Q Consensus       172 ~l~~~~~~  179 (216)
                      .|++.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-35  Score=206.23  Aligned_cols=164  Identities=39%  Similarity=0.732  Sum_probs=152.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..+||+|+|.+++|||||+++|..+.+.+.+.++.........+..++....+.+||++|++.+..++..+++.++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            35689999999999999999999999999999999888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      +|||++++++++.+..|+..+........|+++|+||+|+.+ .+.+..++++.+++..++.+++|||++|.||+++|.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999888888778899999999999954 5578889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027985          173 IAREI  177 (216)
Q Consensus       173 l~~~~  177 (216)
                      |.+.+
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=3.2e-35  Score=207.66  Aligned_cols=164  Identities=37%  Similarity=0.663  Sum_probs=144.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+++|||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            358999999999999999999999999888888877554 4567789999999999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||.+++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++++.+++..++.++++||++|.||+++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999887654 45789999999999854 5678899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      |++.+..
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9988753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-35  Score=205.12  Aligned_cols=163  Identities=32%  Similarity=0.489  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            357999999999999999999999999888888877654 4677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.. .+.+..++++.+++.+++.+++|||++|.||+++|+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999998887654 45789999999999854 4568889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          173 IAREIK  178 (216)
Q Consensus       173 l~~~~~  178 (216)
                      |+..+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=207.13  Aligned_cols=164  Identities=26%  Similarity=0.437  Sum_probs=143.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..+||+|+|++|+|||||+++|+.+.+...+.++.+. ........++..+.+.|||++|++.+..++..+++.+|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            35799999999999999999999999998888888773 44556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHHhC-CcEEEEec
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE-----------SKRAVPTAKGQELADEYG-IKFFETSA  160 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (216)
                      +|||++++++++.+..|+.........+.|+++|+||+|+.+           ....+..++++.+++..+ +.+++|||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            999999999999998876666555556899999999999853           234588899999999875 79999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIAREI  177 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~  177 (216)
                      ++|.||+++|+.++..+
T Consensus       160 k~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999988766

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=205.99  Aligned_cols=163  Identities=33%  Similarity=0.555  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ..||+|+|.+|+|||||+++|+.+.+...+.++.+ +.....+..++..+.+.|||++|++.+..++..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888876 44556677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEEecCC
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFETSAKT  162 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.+.           ...+..++++.+++.++ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999888766665555668999999999999642           24578889999999998 4899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIK  178 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~  178 (216)
                      |.||+++|+.+.+.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=204.48  Aligned_cols=164  Identities=38%  Similarity=0.632  Sum_probs=143.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|+++.+...+.++.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            38999999999999999999999999888888766 55667778899999999999999999999899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI  173 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (216)
                      ||.+++++++.+..|+..+.... ....|+++|+||+|+.+ ...+..++++.+++.+++++++|||++|.||+++|..|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH-QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT-SCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh-hccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998775543 45789999999999854 56788899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          174 AREIKQR  180 (216)
Q Consensus       174 ~~~~~~~  180 (216)
                      ++.+.++
T Consensus       163 ~~~i~k~  169 (171)
T d2erya1         163 VRVIRKF  169 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=205.04  Aligned_cols=163  Identities=44%  Similarity=0.774  Sum_probs=151.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|+.+.+...+.++.+.......+...+..+.+.+||++|++.+..++..++++++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            57999999999999999999999999999999998888888888999899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ||.++.++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.+++|||++|+||+++|.+|+
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc-cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999998887777899999999999865 567889999999999999999999999999999999998


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-35  Score=209.76  Aligned_cols=171  Identities=50%  Similarity=0.905  Sum_probs=150.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC----------eEEEEEEEeCCCcccccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG----------KRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~   81 (216)
                      .++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++          ..+.+.+||++|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            46789999999999999999999999999888888888777776665543          34689999999999999999


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ..+++++|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+.+ .+.+..++++.+++.+++.++++||
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchh-hhcchHHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999999999988775543 45678999999999954 5678889999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Q 027985          161 KTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      ++|+||+++|++|.+.+.++..+
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999876554

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-34  Score=203.03  Aligned_cols=164  Identities=62%  Similarity=1.111  Sum_probs=145.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+++|||||+++|+.+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ||.+++.+++.+..|+..+........|++++++|.|+.  ......++++.+++..++++++|||++|+||+++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh--hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            999999999999999988888877788999999999974  356778899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          175 REIKQR  180 (216)
Q Consensus       175 ~~~~~~  180 (216)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            888653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-35  Score=207.84  Aligned_cols=162  Identities=30%  Similarity=0.461  Sum_probs=142.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.+||+|+|.+|+|||||+++|+++.+...+.++.+.. +......++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            35899999999999999999999999988888887644 34556788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |||+++++++..+..|+..+....  ..+.|+++|+||+|+.+ .+.+..++++.+++.+++++++|||++|.||+++|.
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~  158 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  158 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHH
Confidence            999999999999999998876543  35789999999999854 556888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          172 SIAREI  177 (216)
Q Consensus       172 ~l~~~~  177 (216)
                      .|++.+
T Consensus       159 ~l~~~~  164 (171)
T d2erxa1         159 ELLNLE  164 (171)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            988754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-34  Score=201.05  Aligned_cols=166  Identities=52%  Similarity=0.971  Sum_probs=141.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      -+..+||+|+|.+++|||||+++|+.+.+... ..++.+.+.....+..++..+.+.||||+|++.+..++..+++.+|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            36789999999999999999999998887544 45556677888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (216)
                      +++|||.++++++..+..|+..+........|+++|+||.|..+ ...+..+++..+++..++.++++||++|+||+++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh-cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999888777777889999999999854 56788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          171 FSIAREIK  178 (216)
Q Consensus       171 ~~l~~~~~  178 (216)
                      ++|++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-34  Score=202.74  Aligned_cols=164  Identities=43%  Similarity=0.758  Sum_probs=150.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999998888888889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE--SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |||.+++.+++.+..|+..+........|+++|+||.|+.+  ..+.+..++++.+++..+++++++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888887777899999999999854  2467888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          172 SIAREI  177 (216)
Q Consensus       172 ~l~~~~  177 (216)
                      .|.+.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=201.03  Aligned_cols=163  Identities=37%  Similarity=0.653  Sum_probs=145.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|++++|||||+++|+++.+...+.++.+..+.. .+...+..+.+.+||++|.+.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            45899999999999999999999999988888888765554 45678888999999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||.+++.+++.+..|+..+.... ..++|+++|+||+|+.+  ..+..++++.+++..++.++++||++|+||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc--ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999887654 34689999999999854  567788999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027985          173 IAREIKQ  179 (216)
Q Consensus       173 l~~~~~~  179 (216)
                      |++.+.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-34  Score=202.16  Aligned_cols=163  Identities=36%  Similarity=0.632  Sum_probs=145.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|+|||||+++|+++.+...+.++.+ +.+...+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            468999999999999999999999999888888776 4556677889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++.+++.+++|||++|.||+++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh-cccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            999999999999999998886643 45789999999999864 4567788899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027985          173 IAREIK  178 (216)
Q Consensus       173 l~~~~~  178 (216)
                      |++.+.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            988763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=207.28  Aligned_cols=160  Identities=31%  Similarity=0.641  Sum_probs=139.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|+..+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            47999999999999999999999999999999988888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (216)
                      ||++++++++.+..|+..+..... ++|+++|+||+|+.+..   ..++...++...++.++++||++|+||+++|.+|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~---~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSC---CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhh---hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999988877654 79999999999996532   22344567888889999999999999999999999


Q ss_pred             HHHH
Q 027985          175 REIK  178 (216)
Q Consensus       175 ~~~~  178 (216)
                      +.+.
T Consensus       159 ~~l~  162 (170)
T d1i2ma_         159 RKLI  162 (170)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8885

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-34  Score=200.36  Aligned_cols=164  Identities=37%  Similarity=0.605  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|++|+|||||+++|+++.+...+.||.+.++. ..+..++..+.+.+||++|.+.+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            389999999999999999999999999999998876654 445578888999999999987664 456688999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC-CHHHHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQVFFS  172 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~  172 (216)
                      ||+++++++..+..|+..+.. ....+.|+++|+||+|+.+ .+.+..++++.+++.+++.++++||++|+ ||+++|..
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhh-hccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            999999999999998766544 3345799999999999954 45788999999999999999999999998 59999999


Q ss_pred             HHHHHHHHH
Q 027985          173 IAREIKQRL  181 (216)
Q Consensus       173 l~~~~~~~~  181 (216)
                      |++.+.+++
T Consensus       159 l~~~i~~~r  167 (168)
T d2atva1         159 LCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-34  Score=199.81  Aligned_cols=163  Identities=35%  Similarity=0.648  Sum_probs=143.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|+|||||+++|+.+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            568999999999999999999999999888888877444 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCCHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFF  171 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~  171 (216)
                      |||++++++++.+..|+..+... ...+.|+++|+||+|+.+ ......+++..+++.. ++.+++|||++|+||+++|.
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccc-ccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            99999999999999999888664 345789999999999965 4567778888888875 68999999999999999999


Q ss_pred             HHHHHHH
Q 027985          172 SIAREIK  178 (216)
Q Consensus       172 ~l~~~~~  178 (216)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=199.84  Aligned_cols=165  Identities=47%  Similarity=0.838  Sum_probs=150.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .++||+|+|.+|+|||||+++|.++.+...+.++.+.......+.+++..+.+.|||+||++.+..++..+++.+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            56899999999999999999999999999888888888888888999998999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |||++++.++..+..|+..+.... ....|+++++||.|..  ...+...+++.+++..++.++++||++|+||+++|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~--~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccc--cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999886644 3457888999999974  4678889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027985          173 IAREIKQR  180 (216)
Q Consensus       173 l~~~~~~~  180 (216)
                      |++.+.+.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99888743

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=200.61  Aligned_cols=168  Identities=43%  Similarity=0.750  Sum_probs=132.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +.+||+|+|.+|+|||||+++|++..+...+.++.+........... ...+.+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            46899999999999999999999999988887777666655555443 34467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHH
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVE  167 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  167 (216)
                      +|||.+++.+++.+..|+..+....    ...+|+++|+||+|+.+....+..++++.+++..+ +++++|||++|.||+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            9999999999999999998886543    34689999999999976556678889999999986 789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027985          168 QVFFSIAREIKQRL  181 (216)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (216)
                      ++|++|++.+.++.
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998887653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-33  Score=196.42  Aligned_cols=166  Identities=40%  Similarity=0.716  Sum_probs=145.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +.+..+||+|+|.+++|||||+++|+.+.+...+.++.+.......+..++..+.+.+||++|.......+...+..+++
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   81 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   81 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence            45678999999999999999999999999988888888888888888889999999999999999988889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCC
Q 027985           91 ILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFN  165 (216)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  165 (216)
                      +++++|.+++.+++.+..|+..+....    ..+.|+++|+||+|+.+  +.+..++++.++++.+ +++++|||++|+|
T Consensus        82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~--~~v~~~~~~~~~~~~~~~~~~e~Sak~~~g  159 (174)
T d1wmsa_          82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATN  159 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS--CSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh--ccCcHHHHHHHHHHcCCCeEEEEcCCCCcC
Confidence            999999999999999999998876543    34689999999999854  5788899999998875 7999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIK  178 (216)
Q Consensus       166 i~~l~~~l~~~~~  178 (216)
                      |+++|++|++.+.
T Consensus       160 I~e~f~~l~~~il  172 (174)
T d1wmsa_         160 VAAAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-33  Score=198.89  Aligned_cols=165  Identities=31%  Similarity=0.531  Sum_probs=142.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+|+|.+|+|||||+++|+.+.+...+.++.. +.....+..++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            3569999999999999999999999999888888876 445566778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEEec
Q 027985           93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFETSA  160 (216)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (216)
                      +|||++++.+++.+..|+.........+.|+++|+||+|+.+.           .......+...++++++ +.||+|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999987555554445557999999999998432           23456778888888888 79999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~  178 (216)
                      ++|.||+++|..|++.+.
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999998773

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-32  Score=197.48  Aligned_cols=168  Identities=39%  Similarity=0.710  Sum_probs=148.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|+++.+...+.++.+.+.....+...+..+.+.+||++|+..+...+..++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999999999988888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-hCCcEEEEecCCCCCHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADE-YGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l  169 (216)
                      +|.++..++..+..|+..+....    ...+|+++|+||+|+.+  ..+..++...++.. .++.+++|||++|.||+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc--cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            99999999999999998886643    23589999999999854  55677777777655 4689999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 027985          170 FFSIAREIKQRLVES  184 (216)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (216)
                      |++|++.+.++..+.
T Consensus       160 f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         160 FQTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccc
Confidence            999999887765543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-33  Score=198.01  Aligned_cols=164  Identities=24%  Similarity=0.469  Sum_probs=142.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|+|||||+++|+.+.+...+.++.. +.....+..++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            57999999999999999999999999888888765 44555677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHHhC-CcEEEEecCC
Q 027985           95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE-----------SKRAVPTAKGQELADEYG-IKFFETSAKT  162 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      ||++++++++.+..|+.........+.|+++|+||+|+.+           ....+..++...++++.+ +.|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998877666555556899999999999853           245588899999999988 5899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027985          163 NF-NVEQVFFSIAREIKQ  179 (216)
Q Consensus       163 ~~-~i~~l~~~l~~~~~~  179 (216)
                      |+ +++++|+.++..+..
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999888763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-33  Score=195.89  Aligned_cols=164  Identities=29%  Similarity=0.447  Sum_probs=138.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCC---cccccccccccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAG---QERFRTITTAYYRGAM   89 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d   89 (216)
                      ..+||+++|.+|+|||||+++|++..+.. ...++.+.+.+...+.+++..+.+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            46899999999999999999999876643 3445566677778888999989999999875   3433  5667899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ++|+|||+++++++..+..|+..+... ...++|+++|+||+|+.+ .+.+..++++.+++..+++++++||++|.||++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~  158 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  158 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEeCCCCcCHHH
Confidence            999999999999999999999888654 345799999999999864 557888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027985          169 VFFSIAREIKQR  180 (216)
Q Consensus       169 l~~~l~~~~~~~  180 (216)
                      +|..|++.+..+
T Consensus       159 ~f~~l~~~i~~r  170 (172)
T d2g3ya1         159 LFEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999988654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-32  Score=191.91  Aligned_cols=159  Identities=45%  Similarity=0.853  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccccEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   93 (216)
                      .+||+|+|.+|+|||||+++|+++.+...+.++.+.......+...+....+.+||++|..... ..+..+++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            5899999999999999999999999988888888878888888888888999999999987665 446678999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC---CCCHHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT---NFNVEQV  169 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~l  169 (216)
                      |||++++++++.+..|+..+..+. ..++|+++|+||+|+.+ ...+..++++.+++.+++.+++|||++   ++||+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh-ccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            999999999999999999887754 45789999999999965 456889999999999999999999987   5699999


Q ss_pred             HHHHH
Q 027985          170 FFSIA  174 (216)
Q Consensus       170 ~~~l~  174 (216)
                      |++|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99873

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1e-30  Score=185.30  Aligned_cols=164  Identities=23%  Similarity=0.365  Sum_probs=135.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+++|||||+++|++..+... .++.+ +.+...+.+++..+.+.|||++|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            469999999999999999999999988654 34433 344667788999999999999997653     36888999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHH-hCCcEEEEecCCCCCHHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDE-SKRAVPTAKGQELADE-YGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~  168 (216)
                      |||++++++++.+..|+..+....   ....|+++|+||.|+.. ....+..++++.++.. .++.|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999988876543   35679999999999843 2455777888888655 467999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 027985          169 VFFSIAREIKQRLVES  184 (216)
Q Consensus       169 l~~~l~~~~~~~~~~~  184 (216)
                      +|..|++.+.....++
T Consensus       157 ~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         157 VFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999888776554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=3.9e-31  Score=185.80  Aligned_cols=156  Identities=22%  Similarity=0.416  Sum_probs=126.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|++++|||||+++|.+..+...+.+|.+.++  ..+..++  +.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            48999999999999999999999999888888776444  4456665  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HH----HHHhCCcEEEEecCCCCCHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQ-EL----ADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ||+++..++.....|+..+... ...+.|+++|+||.|+.+..   ...++. .+    +...++.++++||++|+|+++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh---hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            9999999999998887777543 34579999999999985422   222222 21    223346799999999999999


Q ss_pred             HHHHHHHHH
Q 027985          169 VFFSIAREI  177 (216)
Q Consensus       169 l~~~l~~~~  177 (216)
                      +|+||++++
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.1e-30  Score=184.01  Aligned_cols=159  Identities=22%  Similarity=0.372  Sum_probs=124.3

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...+..+||+++|++|+|||||+++|.+..+.... ++.+  +....+...+  +.+.+||++|++.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence            44566799999999999999999999998874332 2222  3344556665  78999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-----HHHhCCcEEEEecCCC
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQEL-----ADEYGIKFFETSAKTN  163 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~  163 (216)
                      ++|+|||+++..++..+..|+..+... ...++|+++|+||+|+.+..   ........     ++...+.+++|||++|
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc---cHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            999999999999999998887776543 34578999999999996522   22222221     1223457999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027985          164 FNVEQVFFSIARE  176 (216)
Q Consensus       164 ~~i~~l~~~l~~~  176 (216)
                      +|++++|+||.+.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=5.1e-30  Score=180.23  Aligned_cols=157  Identities=24%  Similarity=0.401  Sum_probs=123.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||+++|.+..+. ...++.+  .....+..++  +.+.+||+||++.+...+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe--eeeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            489999999999999999999987764 3445544  4444566666  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      ||.++..++.....++..+.. ....+.|+++|+||+|+.+   ....++.....     ...++.+++|||++|+|+++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG---ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccc---ccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            999999999888777665543 3345789999999999854   22233333222     12235789999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          169 VFFSIAREIKQ  179 (216)
Q Consensus       169 l~~~l~~~~~~  179 (216)
                      +|+||.+.+..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999988753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=9.7e-31  Score=186.82  Aligned_cols=162  Identities=22%  Similarity=0.362  Sum_probs=122.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....+||+++|.+|||||||+++|.+..+.. ..++.+  .........+  +.+.+||++|++.+...+..+++.++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccc--eEEEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            4457999999999999999999998776643 233433  3334445555  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-----HHHhCCcEEEEecCCCCC
Q 027985           92 LLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQEL-----ADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~  165 (216)
                      ++|+|+++..++.....|+..+.. ....+.|+++|+||+|+.+   .....++...     +...++.+++|||++|+|
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG---ALSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT---CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc---ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            999999999999999888766544 3345689999999999854   2233333322     223346799999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 027985          166 VEQVFFSIAREIKQRL  181 (216)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (216)
                      |+++|++|.+.+.+++
T Consensus       166 v~e~~~~l~~~i~~~~  181 (182)
T d1moza_         166 ITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999987764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=6.3e-30  Score=181.11  Aligned_cols=155  Identities=21%  Similarity=0.420  Sum_probs=121.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.++||||||+++|++..+... .++.+  ..........  +.+.+||+||...+...+..+++.++++|+|
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETT--EEEEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceee--eeEEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            58999999999999999999998776432 33333  3333444444  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-----HHHhCCcEEEEecCCCCCHHH
Q 027985           95 YDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQEL-----ADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      +|+++..++..+..|+..+.. ......|+++|+||+|+.+.   ....++...     +...++.+++|||++|+||++
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc---ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            999999999999888776644 34457899999999998542   222222222     222345789999999999999


Q ss_pred             HHHHHHHHH
Q 027985          169 VFFSIAREI  177 (216)
Q Consensus       169 l~~~l~~~~  177 (216)
                      +|+||.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=1.8e-28  Score=171.11  Aligned_cols=157  Identities=19%  Similarity=0.342  Sum_probs=119.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|||||||+++|+++.+..........   ......  ..+.+.+||++|...+...+..+++.++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEEee--eeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988876554433221   122223  3478999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985           96 DVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRA--VPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS  172 (216)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (216)
                      |..++.++..+..|+..+... .....|+++++||.|+.+....  +.......+++..++.+++|||++|+||+++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            999999999998887776543 3456899999999998542211  1111112233344578999999999999999999


Q ss_pred             HHHHH
Q 027985          173 IAREI  177 (216)
Q Consensus       173 l~~~~  177 (216)
                      |.+.+
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=157.93  Aligned_cols=156  Identities=20%  Similarity=0.299  Sum_probs=115.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||+++|.+..+....... .  .....+...+  +.+.+||+++.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~-~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-G--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS-C--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc-c--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            4589999999999999999999998875432222 1  2233344555  689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHhCCcEEEEecCCCCCHH
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  167 (216)
                      ++|.++..++.....++..... ......|+++|+||+|+....   ...++....     ...++.++++||++|+|++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM---TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC---cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999998887665544433 334578999999999985422   223333222     2233579999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          168 QVFFSIAREI  177 (216)
Q Consensus       168 ~l~~~l~~~~  177 (216)
                      ++|++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=4.5e-25  Score=156.53  Aligned_cols=157  Identities=17%  Similarity=0.107  Sum_probs=110.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------cc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~   83 (216)
                      .+--.|+|+|.+|+|||||+++|++.... ....+..+...........+  ..+.+|||||........        ..
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            34457999999999999999999987652 23444445555555556666  589999999965433222        33


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCC
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      .++.+|++|+|+|+.++..... ..|...+... ..+.|+++|+||+|+...    ..+..+.+.+..+ ..++++||++
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKY----PEEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSS----HHHHHHHHHHTSTTSEEEECCTTC
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccC----HHHHHHHHHhhcccCceEEEecCC
Confidence            4678999999999987644332 3334444433 346899999999998541    1233444555454 5789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREI  177 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (216)
                      |+|+++|+++|.+.+
T Consensus       155 ~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         155 ERQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999998755

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=6.5e-25  Score=153.96  Aligned_cols=158  Identities=21%  Similarity=0.423  Sum_probs=120.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|+|||||+++|+++.+.... ++.+  .....+..++  +.+.+||.+|.......+...+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            389999999999999999999998886533 3322  3334445555  6899999999999999899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH----HHHHhCCcEEEEecCCCCCHHHH
Q 027985           95 YDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDESKRAVPTAKGQE----LADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      +|..+..++.....++... ........|+++|+||.|+.+...  ..+....    ++...+++++++||++|+||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc--HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            9999888888776654444 333445688999999999854221  1222222    23344578999999999999999


Q ss_pred             HHHHHHHHHH
Q 027985          170 FFSIAREIKQ  179 (216)
Q Consensus       170 ~~~l~~~~~~  179 (216)
                      |++|.+.+.+
T Consensus       158 ~~~l~~~l~~  167 (169)
T d1upta_         158 MEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999887743

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.4e-25  Score=156.67  Aligned_cols=151  Identities=23%  Similarity=0.281  Sum_probs=113.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   86 (216)
                      +||+++|.+|+|||||+++|++.... ....++.+.......+...+  ..+.++|+||.......        ....++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987654 34455555555556667776  57889999995443221        234567


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                      .+|++++++|..+.........|...+... ..+.|+++|+||+|+.+......        +..+..++++||++|+||
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~~--------~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGMS--------EVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEEE--------EETTEEEEECCTTTCTTH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHHH--------HhCCCcEEEEECCCCCCH
Confidence            899999999999887777766665555443 44789999999999865332211        223468999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          167 EQVFFSIAREI  177 (216)
Q Consensus       167 ~~l~~~l~~~~  177 (216)
                      ++|+++|.+.+
T Consensus       151 ~~L~~~l~~~l  161 (161)
T d2gj8a1         151 DVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999998763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.4e-24  Score=154.20  Aligned_cols=157  Identities=16%  Similarity=0.139  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   89 (216)
                      .|+++|.+|+|||||+|+|++........+..+.+........... ..+.+||+||.....       ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCC-CeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999987664444444444444433333322 478999999943211       11223467899


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985           90 GILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus        90 ~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                      ++++++|....  ..+.....|+....... .+.|+++|+||+|+.+.   .............+.++|++||++|+|++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhH---HHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            99999998653  23333334443332221 25799999999998542   12233444455567899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027985          168 QVFFSIAREIK  178 (216)
Q Consensus       168 ~l~~~l~~~~~  178 (216)
                      +|++.|.+.+.
T Consensus       158 ~L~~~i~~~l~  168 (180)
T d1udxa2         158 ALKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999888874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-23  Score=145.72  Aligned_cols=151  Identities=23%  Similarity=0.339  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|++|+|||||+++|++..+.. ..++..  .......+.+  +.+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCS--CEEEEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceee--EeEEEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 344443  3333444544  579999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH------------HhCCcEEEEecCCC
Q 027985           97 VTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD------------EYGIKFFETSAKTN  163 (216)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~  163 (216)
                      ..+...+.....|+...... ...+.|+++++||.|+..   .....++.....            ...+.+++|||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS---CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc---cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            99999888887776666443 345789999999999854   223333322221            12346999999999


Q ss_pred             CCHHHHHHHHHH
Q 027985          164 FNVEQVFFSIAR  175 (216)
Q Consensus       164 ~~i~~l~~~l~~  175 (216)
                      +|++|+|+||.+
T Consensus       154 ~Gv~e~~~~l~~  165 (166)
T d2qtvb1         154 NGYLEAFQWLSQ  165 (166)
T ss_dssp             BSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC
Confidence            999999999865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.9e-24  Score=150.16  Aligned_cols=157  Identities=22%  Similarity=0.222  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYYR   86 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   86 (216)
                      .|+|+|.+|+|||||+++|++.... ....+..+.......+...+  ..+.+||++|....         ......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            5899999999999999999986653 33344444444445555555  58999999994221         122233567


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (216)
                      .+|+++++++......... ..++..+...   +.|+++|+||+|+..   +...+....+.+.....++++||++|.|+
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~i~iSAk~g~gi  152 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLR---EFEREVKPELYSLGFGEPIPVSAEHNINL  152 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHH---HHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhh---hhhhHHHHHHHhcCCCCeEEEecCCCCCH
Confidence            8999999999876544332 3444445544   679999999999843   11122222333333357899999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027985          167 EQVFFSIAREIKQRLV  182 (216)
Q Consensus       167 ~~l~~~l~~~~~~~~~  182 (216)
                      ++++++|.+.+.+...
T Consensus       153 d~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         153 DTMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCCC
Confidence            9999999998765543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.7e-23  Score=150.77  Aligned_cols=161  Identities=21%  Similarity=0.172  Sum_probs=122.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|..|||||||+++|....+.  +.||.+.+.  ..+....  +.+.+||++|++.+...|..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE--YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEE--EEEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEE--EEEeccc--eeeeeccccccccccccccccccccceeeEe
Confidence            489999999999999999999888774  567776543  3444444  7899999999999999999999999999999


Q ss_pred             EECCChh-----------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------------CCCCCHHHHHHHH
Q 027985           95 YDVTDES-----------SFNNIRNWMRNIDQHAADNVNKILVGNKADMDES---------------KRAVPTAKGQELA  148 (216)
Q Consensus        95 ~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~~~~  148 (216)
                      +|..+..           ..+.+..|...+......+.|+++++||.|+.+.               ...........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9997753           3455666777776666678999999999997221               1112223333332


Q ss_pred             HHh----------CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985          149 DEY----------GIKFFETSAKTNFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       149 ~~~----------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (216)
                      ...          .+.++++||++|+||+++|+.+.+.+.+..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            211          134789999999999999999998887654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.6e-23  Score=150.32  Aligned_cols=157  Identities=19%  Similarity=0.213  Sum_probs=113.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|..|||||||+++|....+++..       .....+...+  +.+.+||++|++.+...|..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~-------~~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG-------IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS-------EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc-------EEEEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            489999999999999999999876664432       2223445555  7899999999999999999999999999999


Q ss_pred             EECCChhhH-----------HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--------------CCCCCHHHHHH---
Q 027985           95 YDVTDESSF-----------NNIRNWMRNIDQHAADNVNKILVGNKADMDES--------------KRAVPTAKGQE---  146 (216)
Q Consensus        95 ~d~~~~~s~-----------~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~---  146 (216)
                      +|.++..++           +....|...+........|+++++||.|+...              .......+...   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887654           33344445455555667899999999996210              11112222221   


Q ss_pred             --HHHH------hCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985          147 --LADE------YGIKFFETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       147 --~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                        +.+.      ..+.++++||++++||+++|+.+.+.+.++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence              1111      123577899999999999999998887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=2.2e-23  Score=147.77  Aligned_cols=160  Identities=19%  Similarity=0.205  Sum_probs=105.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc-------cceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFI-------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      ..++|+++|.+++|||||+|+|++........       ...+.......+..++  ..+.++|++|+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            45799999999999999999998643322111       1112222222334444  57899999999988888888889


Q ss_pred             cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHHh----CCcEEEEecC
Q 027985           87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV-PTAKGQELADEY----GIKFFETSAK  161 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~----~~~~~~~Sa~  161 (216)
                      .+|++++|+|+.+...... ...+..+...   ++|+++|+||+|+.+..... ..+..+.+.+..    +.++|++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~-~~~~~~~~~~---~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQT-GEHMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccchhh-hhhhhhhhhc---CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            9999999999987543322 2222333332   68999999999986522111 112222222222    3589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027985          162 TNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (216)
                      +|+|+++|++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999988764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=7.2e-23  Score=145.98  Aligned_cols=161  Identities=19%  Similarity=0.156  Sum_probs=104.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------------c
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------------I   80 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------~   80 (216)
                      ..++|+|+|.+|+|||||+|+|++.... ....+..+.......+..++  ..+.++|+||......            .
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            4699999999999999999999987652 23334444444445566776  4789999999543221            2


Q ss_pred             cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh----CCcEE
Q 027985           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY----GIKFF  156 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~  156 (216)
                      ....++.+|++++|+|+..+.... ...+...+...   +.|+++|+||+|+.........+..+.+.+..    ..+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            223457899999999997643322 22333333333   68999999999986533322222222222222    25799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027985          157 ETSAKTNFNVEQVFFSIAREIKQR  180 (216)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (216)
                      ++||++|.|+++|+++|.+.+..+
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999998776543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=8.6e-24  Score=150.52  Aligned_cols=150  Identities=20%  Similarity=0.206  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------------cccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------------RTIT   81 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------~~~~   81 (216)
                      .|+++|.+|+|||||+|+|++........++.|.+..  .+...    .+.|+|+||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--ccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999998876666666664432  33343    3678999994211               1112


Q ss_pred             ccccccccEEEEEEECCChhhHHHHH----------HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIR----------NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY  151 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  151 (216)
                      ...++.+|++++|+|+..........          ..++.+..   .+.|+++|+||+|+.+...    .....+....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~----~~~~~~~~~~  148 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ----EVINFLAEKF  148 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH----HHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH----HHHHHHHHHh
Confidence            23456799999999997543222211          11222222   3689999999999754221    2222233332


Q ss_pred             C-------CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          152 G-------IKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       152 ~-------~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      .       ..++++||++|+|+++|+++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2       358999999999999999999988875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=2.4e-22  Score=142.77  Aligned_cols=156  Identities=21%  Similarity=0.314  Sum_probs=111.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+++|.+|||||||+++|++..+... .++.+  .....+..++  ..+.+||+.++..+...+...++..+++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCC--CSCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--cceeEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            458999999999999999999998877543 23333  2233455666  578899999999988889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----------------hCCcE
Q 027985           94 VYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADE-----------------YGIKF  155 (216)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~  155 (216)
                      ++|..+...+.....++..... ....+.|+++++||.|+..   ......+......                 .++.+
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc---cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999998888877665444433 3345789999999999854   3344444433321                 12458


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 027985          156 FETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ++|||++|+||+|+|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.1e-22  Score=144.17  Aligned_cols=161  Identities=24%  Similarity=0.274  Sum_probs=110.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|||||||+++|.   +...+.||.+.  ....+...+  +.+.+||++|++.+...|..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~--~~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI--HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE--EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee--EEEEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            4899999999999999999993   44556677664  444566665  7899999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCC---------------CCCCHHHHHHHH
Q 027985           95 YDVTDES----------SFNNIRNWMRNI-DQHAADNVNKILVGNKADMDESK---------------RAVPTAKGQELA  148 (216)
Q Consensus        95 ~d~~~~~----------s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~  148 (216)
                      +|.++..          .+.....++..+ ......+.|+++++||.|+.+..               .....+.+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998743          234444444444 33344579999999999973210               011223333332


Q ss_pred             HHh-----------CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027985          149 DEY-----------GIKFFETSAKTNFNVEQVFFSIAREIKQRLV  182 (216)
Q Consensus       149 ~~~-----------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (216)
                      ...           .+.++++||++++||+++|+.+.+.+.+...
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~l  199 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  199 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHhc
Confidence            221           2456789999999999999999888876543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.2e-22  Score=141.42  Aligned_cols=148  Identities=24%  Similarity=0.234  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--c-------cccccc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-------ITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-------~~~~~~   85 (216)
                      +||+++|.+|+|||||+|+|++.... ....++.+.......+...+  ..+.+||+||.....  .       .....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999976542 34444554445555566676  589999999943211  0       112235


Q ss_pred             ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985           86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (216)
                      ..+|++++|+|++++.......-+     ... ...++++++||.|+.+.   ...+++.... ..+.+++++||++|+|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-----~~~-~~~~~i~~~~k~d~~~~---~~~~~~~~~~-~~~~~~~~vSA~~g~g  148 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-----ERI-KNKRYLVVINKVDVVEK---INEEEIKNKL-GTDRHMVKISALKGEG  148 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-----HHH-TTSSEEEEEEECSSCCC---CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-----hhc-ccccceeeeeeccccch---hhhHHHHHHh-CCCCcEEEEECCCCCC
Confidence            679999999999987665443222     111 25689999999998652   2233322211 2246899999999999


Q ss_pred             HHHHHHHHHH
Q 027985          166 VEQVFFSIAR  175 (216)
Q Consensus       166 i~~l~~~l~~  175 (216)
                      |++|+++|.+
T Consensus       149 i~~L~~~I~k  158 (160)
T d1xzpa2         149 LEKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.88  E-value=8.2e-23  Score=150.04  Aligned_cols=163  Identities=18%  Similarity=0.147  Sum_probs=103.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEE----------------EECCeEEEEEEEeCCCcccccccc
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTI----------------ELDGKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      |+|+|.+++|||||+++|++.........+.+........                .+......+.++|||||..+....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999997643211111111100001101                111122478999999999998888


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH-------------------
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA-------------------  142 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-------------------  142 (216)
                      ...+..+|++|+|+|+.+.-.... ...+..+...   +.|+++|+||+|+.+........                   
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999986433222 2233333333   78999999999986533221100                   


Q ss_pred             HHHHHHHH------------------hCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027985          143 KGQELADE------------------YGIKFFETSAKTNFNVEQVFFSIAREIKQRLVES  184 (216)
Q Consensus       143 ~~~~~~~~------------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~  184 (216)
                      ........                  ..++++++||++|.|+++|++.|.....+...+.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~  223 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQ  223 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGG
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            00000010                  0136899999999999999999888776655543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=3.5e-23  Score=147.52  Aligned_cols=156  Identities=19%  Similarity=0.166  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----cc---cccccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----IT---TAYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~~d   89 (216)
                      .|+|+|.+|+|||||+|+|++........+..|.+.......+.+. ..+.+|||||......    ..   ...+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999987765444555555555555555433 3689999999533211    11   12245678


Q ss_pred             EEEEEEECCChhhHHHHH---HH--HHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--CCcEEEEecCC
Q 027985           90 GILLVYDVTDESSFNNIR---NW--MRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETSAKT  162 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~---~~--~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  162 (216)
                      .++++++...........   .+  ..........++|+++|+||+|+.+.     .+..+.+.+..  +.++|.+||++
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-----~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-----HHHHHHHHHHhccCCcEEEEECCC
Confidence            888888765432222111   11  11111122235799999999998542     22334444444  47899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027985          163 NFNVEQVFFSIAREIK  178 (216)
Q Consensus       163 ~~~i~~l~~~l~~~~~  178 (216)
                      |+|+++|++.|.+.+.
T Consensus       157 g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         157 REGLRELLFEVANQLE  172 (185)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999988763

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=4.6e-21  Score=137.53  Aligned_cols=155  Identities=15%  Similarity=0.108  Sum_probs=93.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-----------
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----------   78 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------   78 (216)
                      .+...+|+|+|.+|+|||||+|+|++...  .....++.+.+.  .......   .+.+.|++|.....           
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~--~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--NFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE--EEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeec--ccccccc---cceEEEEEeeccccccccccchhhh
Confidence            44456899999999999999999998654  222333333222  2222332   34556776632111           


Q ss_pred             --cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh----C
Q 027985           79 --TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY----G  152 (216)
Q Consensus        79 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~  152 (216)
                        ..+...+..++++++++|+..+... ...++++.+...   +.|+++|+||+|+.+.  ....+..+.+.+.+    +
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~--~~~~~~~~~~~~~l~~~~~  168 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPK--GKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCG--GGHHHHHHHHHHHHTCCTT
T ss_pred             HHhhhhccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCH--HHHHHHHHHHHHHhcccCC
Confidence              1122344567999999999765332 223444445443   6899999999998531  12223333333333    3


Q ss_pred             CcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          153 IKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ..++++||++|+|+++++++|.+.+
T Consensus       169 ~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            5799999999999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=1.7e-21  Score=139.83  Aligned_cols=164  Identities=17%  Similarity=0.144  Sum_probs=107.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeeEE--EEEEEEE-------------------CCeEEEEE
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDF--KIRTIEL-------------------DGKRIKLQ   67 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---~~~~~~~~~~--~~~~~~~-------------------~~~~~~~~   67 (216)
                      +...++|+++|..++|||||+++|++.....   ....+.+...  ....+..                   ......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4567899999999999999999998643221   1111111111  1111110                   11235689


Q ss_pred             EEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHH
Q 027985           68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQE  146 (216)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~  146 (216)
                      ++|+||+..|.......+..+|++++|+|+.+........+.+..+....  ..++++++||+|+.+.... .....+..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999998888888999999999999987533333444444444432  2457888999998652211 11222333


Q ss_pred             HHHHhC---CcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          147 LADEYG---IKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       147 ~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      +....+   ++++++||++|+|+++|++.|.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            333322   5799999999999999999887654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.6e-20  Score=134.03  Aligned_cols=116  Identities=17%  Similarity=0.326  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccccEEEEEE
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVY   95 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~   95 (216)
                      +|+|+|++|+|||||+++|++..+...+ ++.+.+.....+. ++..+.+.+||++|++.+. ..+..+++.++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6899999999999999999998876543 4444333333222 3334789999999998774 56677889999999999


Q ss_pred             ECCChhh-HHHHHHHHHHHH-H--hcCCCCcEEEEEeCCCCCC
Q 027985           96 DVTDESS-FNNIRNWMRNID-Q--HAADNVNKILVGNKADMDE  134 (216)
Q Consensus        96 d~~~~~s-~~~~~~~~~~l~-~--~~~~~~p~ivv~nK~D~~~  134 (216)
                      |+++..+ +.....++..+. .  .....+|++||+||+|+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            9998655 344444444432 2  2234689999999999965

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=2.1e-21  Score=141.86  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=114.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...||+++|..|||||||+++|....+    .||.+  +....+.+++  +.+.+||++|++.+...|..+++.++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG--~~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSG--IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCS--CEEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCC--eEEEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            458999999999999999999975543    35555  4445566776  789999999999999999999999999999


Q ss_pred             EEECCChh----------hHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----CC-------------------
Q 027985           94 VYDVTDES----------SFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK-----RA-------------------  138 (216)
Q Consensus        94 v~d~~~~~----------s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----~~-------------------  138 (216)
                      |+|.++..          .+.+. ..|...+......+.|++|++||+|+.+..     ..                   
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99997632          22333 333333444444579999999999983211     00                   


Q ss_pred             -----CCHHHHHHH-----HHHhC--------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985          139 -----VPTAKGQEL-----ADEYG--------IKFFETSAKTNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       139 -----~~~~~~~~~-----~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                           .....+..+     .+...        +-.+++||.++.+|+.+|+.+.+.+.+...+
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l~  219 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR  219 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHHT
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHHhh
Confidence                 001222222     22111        3357899999999999999988888766543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=1.2e-20  Score=134.84  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=107.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC----------------CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+++|..++|||||+++|+..                ....+...+.+.+.....+...+  ..+.++|+||+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHHH
Confidence            589999999999999999998641                12233444555555545555555  589999999999998


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC--CHHHHHHHHHHhC----
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV--PTAKGQELADEYG----  152 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~----  152 (216)
                      ......++.+|++|+|+|+.+.-..+ ..+.+..+....  ..|+|+++||+|+.++....  ...+++.+....+    
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            88888899999999999998753322 233333333332  35788899999986422211  1224455555444    


Q ss_pred             -CcEEEEecCCC----------CCHHHHHHHHHHH
Q 027985          153 -IKFFETSAKTN----------FNVEQVFFSIARE  176 (216)
Q Consensus       153 -~~~~~~Sa~~~----------~~i~~l~~~l~~~  176 (216)
                       ++++++|+++|          +++.+|++.|.+.
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence             56999999988          4777777766543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=3.2e-20  Score=134.06  Aligned_cols=162  Identities=15%  Similarity=0.157  Sum_probs=101.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc---cceeeE--EEEEEEEE------------------------CCeEE
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFI---TTIGID--FKIRTIEL------------------------DGKRI   64 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~---~~~~~~--~~~~~~~~------------------------~~~~~   64 (216)
                      ..++|+|+|..++|||||+++|++........   .....+  .....+..                        .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            45899999999999999999998633211100   000000  00000000                        01123


Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-CHHH
Q 027985           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV-PTAK  143 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~  143 (216)
                      .+.++|+|||..|.......+..+|++|+|+|+.+.-.-...++.+..+....  ..|+||++||+|+.+..... ....
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHH
Confidence            68999999999998888888899999999999987522222233333333331  24788889999996532211 1122


Q ss_pred             HHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          144 GQELADEY---GIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       144 ~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ...+....   +++++++||++|.||++|++.|...+
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            23333222   26899999999999999999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.1e-19  Score=128.45  Aligned_cols=158  Identities=17%  Similarity=0.155  Sum_probs=100.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-ccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccccc
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~   81 (216)
                      ..|.-.|+|+|.+|+|||||+|+|++....... .++.+..........+.  ..+..+|++|...         .....
T Consensus         2 ~~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T d1egaa1           2 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   79 (179)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             CccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcc
Confidence            345667999999999999999999987654332 22222222233333444  3667788888432         12222


Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEec
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (216)
                      ......+++++++.|..+.....  ..+...+.   ....|.++|+||.|...... ......+.+....+ ..++++||
T Consensus        80 ~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~---~~~~~~i~v~~k~d~~~~~~-~~~~~~~~~~~~~~~~~~~~vSA  153 (179)
T d1egaa1          80 SSSIGDVELVIFVVEGTRWTPDD--EMVLNKLR---EGKAPVILAVNKVDNVQEKA-DLLPHLQFLASQMNFLDIVPISA  153 (179)
T ss_dssp             TSCCCCEEEEEEEEETTCCCHHH--HHHHHHHH---SSSSCEEEEEESTTTCCCHH-HHHHHHHHHHTTSCCSEEEECCT
T ss_pred             ccchhhcceeEEEEecCccchhH--HHHHHHhh---hccCceeeeeeeeeccchhh-hhhhHhhhhhhhcCCCCEEEEeC
Confidence            33455688888899987533222  22222222   23578899999999765322 22333444455555 58999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 027985          161 KTNFNVEQVFFSIAREI  177 (216)
Q Consensus       161 ~~~~~i~~l~~~l~~~~  177 (216)
                      ++|+|+++|+++|.+.+
T Consensus       154 ~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         154 ETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTTHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHhC
Confidence            99999999999987765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.2e-18  Score=125.33  Aligned_cols=141  Identities=17%  Similarity=0.129  Sum_probs=96.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC------C-----------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD------S-----------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      .++|+++|..++|||||+++|+..      .           .+.+.....+++.....+.+++  .++.|+|||||..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            589999999999999999999621      0           0111223455666666777777  47899999999999


Q ss_pred             ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHHhC--
Q 027985           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRAV--PTAKGQELADEYG--  152 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~--  152 (216)
                      .......++.+|++|+|+|+.+.-..+.. +.+..+...   ++| +++++||+|+.+.....  ...+++.+....+  
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            88888899999999999999876444432 333444443   555 67779999986522211  1233444444433  


Q ss_pred             ---CcEEEEecC
Q 027985          153 ---IKFFETSAK  161 (216)
Q Consensus       153 ---~~~~~~Sa~  161 (216)
                         +.+++.|+.
T Consensus       157 ~~~i~~i~~sa~  168 (204)
T d2c78a3         157 GDEVPVIRGSAL  168 (204)
T ss_dssp             TTTSCEEECCHH
T ss_pred             cccceeeeeech
Confidence               568888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.77  E-value=4e-18  Score=123.78  Aligned_cols=152  Identities=20%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCC--CC-------------------------------CccccceeeEEEEEE
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDS--FT-------------------------------TSFITTIGIDFKIRT   56 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~--~~-------------------------------~~~~~~~~~~~~~~~   56 (216)
                      .++...++|+++|..++|||||+.+|+...  ..                               .+...+.+.+.....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            456688999999999999999999996311  10                               011112233333334


Q ss_pred             EEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 027985           57 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDES  135 (216)
Q Consensus        57 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~  135 (216)
                      +...+  ..+.|+|+|||..+.......+..+|++|+|+|+.+.-.-+. .+.+..+...   +++ +++++||+|+.+.
T Consensus        84 ~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~~---gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred             Eeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHHc---CCCEEEEEEEccccccc
Confidence            44444  579999999999998888888999999999999987533222 2222323332   444 7788899999764


Q ss_pred             CCCCCHH---HHHHHHHHhC-----CcEEEEecCCCCCHH
Q 027985          136 KRAVPTA---KGQELADEYG-----IKFFETSAKTNFNVE  167 (216)
Q Consensus       136 ~~~~~~~---~~~~~~~~~~-----~~~~~~Sa~~~~~i~  167 (216)
                      ......+   ++..+.+..+     ++++++||.+|+||.
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            4332222   3444555544     367999999999984

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=8.9e-19  Score=124.31  Aligned_cols=167  Identities=15%  Similarity=0.097  Sum_probs=87.7

Q ss_pred             CCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc-ceeeEEEEEEEEECCeEEEEEEEeCCC-cccccc-
Q 027985            3 TAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAG-QERFRT-   79 (216)
Q Consensus         3 ~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G-~~~~~~-   79 (216)
                      +++..++-..++.++|+++|.+|+|||||+|+|++......... +.+...........+  ......+.++ ...... 
T Consensus         4 ~~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   81 (188)
T d1puia_           4 SAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG--KRLVDLPGYGYAEVPEEM   81 (188)
T ss_dssp             EESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT--EEEEECCCCC------CC
T ss_pred             CCCChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc--cceeeeecccccchhhhh
Confidence            34444455677889999999999999999999998765332222 222222222222233  2233223332 111111 


Q ss_pred             ------cc---ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 027985           80 ------IT---TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE  150 (216)
Q Consensus        80 ------~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  150 (216)
                            ..   .......+.++++.+......... ..++..+...   ..++++++||.|+.+...  .......+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~v~~k~D~~~~~~--~~~~~~~~~~~  155 (188)
T d1puia_          82 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---NIAVLVLLTKADKLASGA--RKAQLNMVREA  155 (188)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCHHH--HHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc---cccccchhhhhhccCHHH--HHHHHHHHHHH
Confidence                  01   111223445555666655333222 2333333333   678999999999854211  11222222222


Q ss_pred             ---h--CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          151 ---Y--GIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       151 ---~--~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                         .  ...++++||++|.||++|++.|.+.+
T Consensus       156 l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         156 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence               2  24789999999999999999987654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.4e-18  Score=124.25  Aligned_cols=115  Identities=17%  Similarity=0.338  Sum_probs=81.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccc----ccccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY----YRGAM   89 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d   89 (216)
                      |..+|+|+|.+|+|||||+|+|++..+.+    +.+.......+..++  ..+.+||+||++.+...+...    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            45689999999999999999999887643    333334444444444  578999999988766555443    34568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHH----HHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           90 GILLVYDVTD-ESSFNNIRNWM----RNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        90 ~~i~v~d~~~-~~s~~~~~~~~----~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      .+++++|+.+ ..+++....|+    ..+......+.|+++|+||+|+.+
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            8888888764 45555555544    334445566899999999999865

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=7.7e-18  Score=123.62  Aligned_cols=149  Identities=17%  Similarity=0.110  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CC-----------------------------CCccccceeeEEEEEEEEECCeE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD--SF-----------------------------TTSFITTIGIDFKIRTIELDGKR   63 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (216)
                      .++|+++|..++|||||+.+|+..  ..                             ..+...+.+++.....+.+.+  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            489999999999999999998521  10                             011234455666666667766  


Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhH------HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF------NNIRNWMRNIDQHAADNVN-KILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~  136 (216)
                      .++.|+|+|||..|...+...++.+|++|+|+|+......      ....+.+......   ++| +|+++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCC
Confidence            6899999999999999899999999999999999864221      1222323333333   455 77889999986543


Q ss_pred             CCCC---HHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985          137 RAVP---TAKGQELADEYG-----IKFFETSAKTNFNVEQ  168 (216)
Q Consensus       137 ~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (216)
                      ....   ..++..+....+     +.++++|+.+|+|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            3222   233455555554     4689999999988644

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=8.3e-17  Score=119.73  Aligned_cols=114  Identities=19%  Similarity=0.218  Sum_probs=84.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD--SF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      .-+|+++|..++|||||+.+++..  ..                ..+.....++......+.+++  .+++|+||||+..
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~d   83 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhh
Confidence            346999999999999999998521  11                112233344555666777777  5899999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      |.......++-+|++|+|+|+.+.-.....+-| +....+   ++|.++++||+|...
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~---~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY---KVPRIAFANKMDKTG  137 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT---TCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc---CCCEEEEEecccccc
Confidence            999999999999999999999886554444444 334433   799999999999843

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=3.1e-17  Score=120.92  Aligned_cols=153  Identities=16%  Similarity=0.086  Sum_probs=83.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECC
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+|+|..++|||||+.+|+...-                               ..+.....+.+.....+..++
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            3468999999999999999999842110                               011111222222222333444


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHH------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCCC
Q 027985           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN------NIRNWMRNIDQHAADNV-NKILVGNKADMDE  134 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~  134 (216)
                        ..+.++|+|||..+..........+|++++|+|+.+...-.      ...+.+..+...   ++ ++++++||+|+..
T Consensus       102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPS  176 (245)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTT
T ss_pred             --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCc
Confidence              57999999999999998989999999999999998642111      122222222222   34 4778889999864


Q ss_pred             CCCC--CCH---HHHHHHHHHh-------CCcEEEEecCCCCCHHHHH
Q 027985          135 SKRA--VPT---AKGQELADEY-------GIKFFETSAKTNFNVEQVF  170 (216)
Q Consensus       135 ~~~~--~~~---~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~  170 (216)
                      ....  ...   .+++.+..+.       .++++++||++|+||.+++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            2211  111   2223333332       2479999999999997654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=4.1e-17  Score=118.97  Aligned_cols=150  Identities=19%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECCeE
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDGKR   63 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (216)
                      .++|+|+|.-++|||||+.+|+...-                               ..+...+.+.......+..++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            58999999999999999998853110                               111122333344444445554  


Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHH------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN------NIRNWMRNIDQHAADNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  137 (216)
                      ..+.|+|+|||..|.......++-+|++|+|+|+.+.....      ...+.+...... . ..++|+++||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~-~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G-LDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T-CTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-C-CCceEEEEEcccCCCccc
Confidence            68999999999999999999999999999999998752211      122222222222 2 346788899999864222


Q ss_pred             CC-----CHHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985          138 AV-----PTAKGQELADEYG-----IKFFETSAKTNFNVEQ  168 (216)
Q Consensus       138 ~~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (216)
                      ..     ....+..+....+     +.++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            11     1122334444443     4689999999998753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.68  E-value=4.7e-16  Score=115.36  Aligned_cols=111  Identities=15%  Similarity=0.240  Sum_probs=83.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC--CCC----------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS--FTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+|+|..++|||||+.+|+...  ...                +.....+.......+.+++  .++.|+||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            58999999999999999985211  100                1123345566666778887  579999999999999


Q ss_pred             cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD  133 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  133 (216)
                      ......++-+|++|+|+|+.+.-......-| ..+...   ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---cccccccccccccc
Confidence            9899999999999999999876544443333 344443   78999999999963

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.1e-15  Score=117.64  Aligned_cols=159  Identities=13%  Similarity=0.160  Sum_probs=93.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----cccc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTA   83 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~   83 (216)
                      .+++|+|+|.+|+|||||+|+|++.......     ....|.+..  .+...+. -.+.||||||......     +...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~--~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSC-TTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee--eeeccCC-CeEEEEeCCCcccccccHHHHHHHh
Confidence            4699999999999999999999985542211     111222222  2222221 2588999999654322     1223


Q ss_pred             ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCCCCCCHHH----H----HHHHH
Q 027985           84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD------ESKRAVPTAK----G----QELAD  149 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~----~----~~~~~  149 (216)
                      .+..+|+++++.|..-.+...   ..+..+...   +.|+++|.||+|..      ........+.    +    ....+
T Consensus       132 ~~~~~d~~l~~~~~~~~~~d~---~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKKNDI---DIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             TGGGCSEEEEEESSCCCHHHH---HHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCHHHH---HHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            456789888888754322222   233444443   68999999999962      1111111111    1    11122


Q ss_pred             HhCC---cEEEEecCC--CCCHHHHHHHHHHHHHHHH
Q 027985          150 EYGI---KFFETSAKT--NFNVEQVFFSIAREIKQRL  181 (216)
Q Consensus       150 ~~~~---~~~~~Sa~~--~~~i~~l~~~l~~~~~~~~  181 (216)
                      ..+.   ++|.+|..+  ..|+.+|.+.+.+.+.++.
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            3332   578888764  4589999999888876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.58  E-value=2.3e-14  Score=106.23  Aligned_cols=122  Identities=18%  Similarity=0.125  Sum_probs=78.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-------c
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------T   82 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~   82 (216)
                      .....++|+|+|.+|+|||||+|++++..... ...+..|..........++  ..+.++||||........       .
T Consensus        28 ~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          28 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             TTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHH
Confidence            34567999999999999999999999876533 3334455555556667777  579999999954321111       1


Q ss_pred             --cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027985           83 --AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDE  134 (216)
Q Consensus        83 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~  134 (216)
                        ......++++||++.+....-..-...+..+...+..  ..++++|.||.|...
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence              1224578889998886532111112223333333221  247899999999854

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.3e-14  Score=110.99  Aligned_cols=129  Identities=19%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CC--------------CCccccceeeEEEEEEEEE--------------CCe
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SF--------------TTSFITTIGIDFKIRTIEL--------------DGK   62 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~   62 (216)
                      ++.-+|+|+|..++|||||+.+|+..  ..              ..+.....++......+.+              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            33335999999999999999999621  11              1111222233222233322              334


Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH
Q 027985           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA  142 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  142 (216)
                      .+.+.|+|||||..+.......++-+|++|+|+|+.++-......-|.. ...   .++|+++++||+|....+.....+
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~---~~~p~i~viNKiDr~~~el~~~~~  170 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG---ERIKPVVVINKVDRALLELQVSKE  170 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCEEEEEEECHHHHHHTSCCCHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH---cCCCeEEEEECcccccccHHhhHH
Confidence            5789999999999999999999999999999999988655444433333 222   278999999999975434444444


Q ss_pred             HHH
Q 027985          143 KGQ  145 (216)
Q Consensus       143 ~~~  145 (216)
                      ++.
T Consensus       171 ~~~  173 (341)
T d1n0ua2         171 DLY  173 (341)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.43  E-value=6.5e-14  Score=102.86  Aligned_cols=111  Identities=16%  Similarity=0.040  Sum_probs=64.3

Q ss_pred             EEEEEeCCCccccccccccc-----cccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           65 KLQIWDTAGQERFRTITTAY-----YRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                      .+.++|+||+..........     ....+.+++++|+..   +................  ...|.++|+||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            58899999987643322221     223567888998753   33332222111111111  267999999999986421


Q ss_pred             CCCC----------------------HHHHHH---HHHH--hCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985          137 RAVP----------------------TAKGQE---LADE--YGIKFFETSAKTNFNVEQVFFSIAREI  177 (216)
Q Consensus       137 ~~~~----------------------~~~~~~---~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (216)
                      ....                      ......   ..+.  ..++++++||++|+|+++|+..|.++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            1000                      000000   0111  136899999999999999999887764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.36  E-value=1.7e-12  Score=97.23  Aligned_cols=84  Identities=19%  Similarity=0.150  Sum_probs=59.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccc---
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER---   76 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---   76 (216)
                      .++|.++|.|++|||||++++++........|+.|.+.....+.+.+..               ..+.++|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            4799999999999999999999888777777777777777777665431               2588999999321   


Q ss_pred             ----cccccccccccccEEEEEEECC
Q 027985           77 ----FRTITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        77 ----~~~~~~~~~~~~d~~i~v~d~~   98 (216)
                          ........++.+|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                1222334578899999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=4.3e-12  Score=95.81  Aligned_cols=86  Identities=19%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER-   76 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-   76 (216)
                      ..++|.++|.|+||||||++++++... .....|++|.+.....+.+.+.               ...+.++|.||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            558999999999999999999997654 4566777777777777766542               14689999999432 


Q ss_pred             ------cccccccccccccEEEEEEECCC
Q 027985           77 ------FRTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        77 ------~~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                            ........++.+|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  11223345789999999999854

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.27  E-value=6.8e-12  Score=95.37  Aligned_cols=104  Identities=14%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  143 (216)
                      +.+.|++|.|.-..   ......-+|..++|......+..+..+.-   +..     ..=++|+||+|+.+.. ......
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k~g---ilE-----~aDi~vvNKaD~~~~~-~~~~~~  211 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IFE-----LADMIAVNKADDGDGE-RRASAA  211 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HHH-----HCSEEEEECCSTTCCH-HHHHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhhhh---Hhh-----hhheeeEeccccccch-HHHHHH
Confidence            46788888885322   22234458999999988765544332221   111     2238999999985422 111122


Q ss_pred             HHHHHHH----------hCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985          144 GQELADE----------YGIKFFETSAKTNFNVEQVFFSIAREIKQ  179 (216)
Q Consensus       144 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (216)
                      ...+...          +..+++.+||.+++|+++++++|.+....
T Consensus       212 ~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         212 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            2222222          22479999999999999999999777653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.6e-12  Score=96.43  Aligned_cols=103  Identities=14%  Similarity=0.129  Sum_probs=55.4

Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHH
Q 027985           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAK  143 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~  143 (216)
                      .+.|++|.|....   -..+...+|.+++|.+....+.....+..   +...     +=++|+||+|+...... ....+
T Consensus       148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e~-----aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKG---LMEV-----ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHH---HHHH-----CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchh---hhcc-----ccEEEEEeecccchHHHHHHHHH
Confidence            3555555553211   11345668999998876544433332222   2221     33888999998541111 01111


Q ss_pred             HHHHHHH-------hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985          144 GQELADE-------YGIKFFETSAKTNFNVEQVFFSIAREIK  178 (216)
Q Consensus       144 ~~~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (216)
                      .+.....       +..+++.+||.+|+|++++++.|.+...
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            1111111       1246999999999999999999877654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=2.7e-11  Score=92.33  Aligned_cols=84  Identities=18%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE----------------------CCeEEEEEEEeCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL----------------------DGKRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~i~D~~G   73 (216)
                      ++|.++|.|++|||||+|+|++........|++|.+........                      ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999988776667777766554433210                      01225799999999


Q ss_pred             ccc-------cccccccccccccEEEEEEECCC
Q 027985           74 QER-------FRTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        74 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            422       12223345678999999999853

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2.9e-10  Score=85.73  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEE------------------------------------
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTI------------------------------------   57 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~------------------------------------   57 (216)
                      ..+|+|+|..++|||||||+|++..+ +....+++.........                                    
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45899999999999999999999886 33333332111111110                                    


Q ss_pred             --------------EECCeEEEEEEEeCCCccccc-------------ccccccccccc-EEEEEEECCChhhHHHHHHH
Q 027985           58 --------------ELDGKRIKLQIWDTAGQERFR-------------TITTAYYRGAM-GILLVYDVTDESSFNNIRNW  109 (216)
Q Consensus        58 --------------~~~~~~~~~~i~D~~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  109 (216)
                                    .... ...+.|+|+||.....             .+...++...+ ++++|.++.....-.....+
T Consensus       106 ~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                          0000 0147899999943211             22233445555 55667777654444444344


Q ss_pred             HHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985          110 MRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus       110 ~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      ...+   .....++++|+||.|..+.
T Consensus       185 ~~~~---~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEV---DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCT
T ss_pred             HHHh---CcCCCceeeEEeccccccc
Confidence            3333   3345789999999998653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.00  E-value=4.9e-10  Score=84.72  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=24.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSFTT   42 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~~~   42 (216)
                      ..+|+|+|..++|||||||+|++.++-+
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP   51 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLP   51 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCC
Confidence            4689999999999999999999988633

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.72  E-value=5e-09  Score=77.75  Aligned_cols=59  Identities=27%  Similarity=0.342  Sum_probs=38.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      .....++|+|+|.|++|||||+|+|.+... .....|+.|.+.  ..+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~--~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccc--eEEECCC---CeEEecCCCc
Confidence            345679999999999999999999998765 456677776543  3344444   5899999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=1.6e-07  Score=66.80  Aligned_cols=84  Identities=21%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             ccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--hCCcEEEEec
Q 027985           84 YYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE--YGIKFFETSA  160 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa  160 (216)
                      ...+.|.+++|+++.+|. +...+.+++-.....   +++.+||+||+|+.+..   ..+....+...  .+..++.+|+
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~---~~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDED---DLRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHH---HHHHHHHHHHHHTTTSCEEECCT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHH---HHHHHHHhhcccccceeEEEecc
Confidence            356789999999988764 445566665555554   78999999999996421   12223333332  2368999999


Q ss_pred             CCCCCHHHHHHHH
Q 027985          161 KTNFNVEQVFFSI  173 (216)
Q Consensus       161 ~~~~~i~~l~~~l  173 (216)
                      ++++|+++|.+++
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999988766

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=7.8e-08  Score=68.46  Aligned_cols=59  Identities=22%  Similarity=0.148  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc------cccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTTS------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      ..+++|++|+|||||||+|........      ...+..++.....+.++++   -.|+||||..++.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            568999999999999999986533211      1111112233334455542   4678999965543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=1.4e-07  Score=67.32  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             cccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHHhCCcEEEEecCC
Q 027985           85 YRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADEYGIKFFETSAKT  162 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ..+.|.+++|+++.+|. +...+.+++-.....   +++.+||+||+|+.++... .............+..++.+|+++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCC
Confidence            46889999999998764 455566655544443   7899999999999652211 011223334556789999999999


Q ss_pred             CCCHHHHHHHH
Q 027985          163 NFNVEQVFFSI  173 (216)
Q Consensus       163 ~~~i~~l~~~l  173 (216)
                      ++|+++|.++|
T Consensus        85 ~~gl~~L~~~l   95 (231)
T d1t9ha2          85 QDSLADIIPHF   95 (231)
T ss_dssp             HTTCTTTGGGG
T ss_pred             hhHHHHHHHhh
Confidence            99988876654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=1.3e-06  Score=64.36  Aligned_cols=93  Identities=18%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985           82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK  161 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      ...+..+|++|+|+|+.+|.+..+  .   .+..... +.|.++|+||+|+.+.  . ..+....+.+..+...+.+|+.
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~---~l~~~~~-~Kp~IlVlNK~DLv~~--~-~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--P---MIEDILK-NKPRIMLLNKADKADA--A-VTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--H---HHHHHCS-SSCEEEEEECGGGSCH--H-HHHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--H---HHHHHHc-CCCeEEEEECccCCch--H-HHHHHHHHHHhcCCccceeecc
Confidence            446788999999999988755432  1   1222222 6799999999999651  1 1222233334456789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 027985          162 TNFNVEQVFFSIAREIKQRLVE  183 (216)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~~~  183 (216)
                      ++.++.++...+.+.+.+....
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhhhhh
Confidence            9999999988887777655443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.24  E-value=6.7e-06  Score=56.13  Aligned_cols=23  Identities=30%  Similarity=0.765  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999998763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.22  E-value=1.7e-07  Score=66.84  Aligned_cols=58  Identities=26%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSFTT------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      ..+++|++|+|||||||+|.......      ....+..++.....+..++.    .|+||||..++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            45799999999999999998653211      11111111122222345552    377999976543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=5.7e-06  Score=58.29  Aligned_cols=93  Identities=22%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCccccccc----cccccc--------cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAYYR--------GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+||+|....+..    ...+.+        ..+-.++|+|+...  .+.+.+........   + +-=+++||.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~---~-~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV---N-VTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS---C-CCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc---C-CceEEEeccc
Confidence            46899999994332211    111111        13568889998643  33333333333322   1 3367789999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985          132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      -..     ..-.+-.+....+.++.+++  +|++++++
T Consensus       168 e~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         168 GTA-----KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GCS-----CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCC-----cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            532     23355667788889988887  67777553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.14  E-value=2e-06  Score=60.41  Aligned_cols=92  Identities=11%  Similarity=0.077  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCccccccc----ccccc--------ccccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027985           64 IKLQIWDTAGQERFRTI----TTAYY--------RGAMGILLVYDVTDE-SSFNNIRNWMRNIDQHAADNVNKILVGNKA  130 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  130 (216)
                      ..+.|+||+|.......    +..+.        ...+-.++|+|+... +....+...+..+      + +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            46899999995433221    11111        133567888988653 3333333332322      2 225678999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985          131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus       131 D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                      |-..     ..-.+-.+....+.++.+++  +|++++++
T Consensus       162 Det~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         162 DGTA-----KGGVLIPIVRTLKVPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             TSSC-----CCTTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             CCCC-----CccHHHHHHHHHCCCEEEEe--CCCChHhC
Confidence            9532     22234566788888888877  56665443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1.8e-05  Score=56.27  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .=.+|.|..|||||||+++++..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            34678999999999999999865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1e-05  Score=56.88  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCcccccc----cccc---ccc-----cccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027985           64 IKLQIWDTAGQERFRT----ITTA---YYR-----GAMGILLVYDVTDE-SSFNNIRNWMRNIDQHAADNVNKILVGNKA  130 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~---~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  130 (216)
                      +.+.|+||+|....+.    .+..   ...     ..+-.++|+|+... +....+..   .....   + +-=+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~---~~~~~---~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL---FHEAV---G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHH---HHHHS---C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhh---hhhcc---C-CceEEEeec
Confidence            4689999999432211    1111   111     23568889988643 33333322   22222   1 336778999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985          131 DMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ  168 (216)
Q Consensus       131 D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (216)
                      |-..     ..-.+-......+.++.+++  +|+++++
T Consensus       165 De~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA-----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT-----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC-----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9532     23455667888899998888  7877754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=7.3e-06  Score=57.56  Aligned_cols=90  Identities=21%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCcccccccc----ccc--cccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  136 (216)
                      ..+.|+||+|....+...    ..+  ..+.+-+++|.|+...+ ....+    ..+....  + .-=+++||.|-..  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~----~~f~~~~--~-~~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA----RAFDEKV--G-VTGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH----HHHHHHT--C-CCEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHH----HHHHhhC--C-CCeeEEeecCccc--
Confidence            468999999944332211    111  23457788999986543 22222    2222222  1 2247789999422  


Q ss_pred             CCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985          137 RAVPTAKGQELADEYGIKFFETSAKTNFNVE  167 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (216)
                         ..-.+-.+....+.++.+++  .|+.++
T Consensus       164 ---~~G~~l~~~~~~~~Pi~~i~--~Gq~pe  189 (207)
T d1ls1a2         164 ---RGGAALSARHVTGKPIYFAG--VSEKPE  189 (207)
T ss_dssp             ---SCHHHHHHHHHHCCCEEEEC--------
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCChh
Confidence               23455667788888887775  444444

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.89  E-value=1e-05  Score=56.83  Aligned_cols=93  Identities=13%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCcccccc------ccccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRT------ITTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES  135 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  135 (216)
                      ..+.|+||+|...+..      ....+  ....+-+++|+++.....  .+..........   + +--+++||.|-.  
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~~---~-~~~lI~TKlDet--  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQAS---K-IGTIIITKMDGT--  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHHC---T-TEEEEEECTTSC--
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhccc---C-cceEEEecccCC--
Confidence            4789999999533321      11111  123456888888865432  222222222221   2 234678999942  


Q ss_pred             CCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985          136 KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV  169 (216)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (216)
                         ...-.+-.+....+.++..++  +|+++++|
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence               234556677778888988887  68777653

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=1.1e-05  Score=55.20  Aligned_cols=25  Identities=20%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..-+|+|.|++|+|||||++.|...
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=54.39  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++|+|+|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.57  E-value=2.2e-05  Score=53.15  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..++|+|+|++||||||+.+.|...
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            4589999999999999999988643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2e-05  Score=53.08  Aligned_cols=21  Identities=33%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -++|+|.+|||||||++.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.50  E-value=2.7e-05  Score=51.56  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |++.|+||||||||++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.8e-05  Score=53.13  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.44  E-value=3.6e-05  Score=52.76  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.44  E-value=2.7e-05  Score=53.75  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      +++|+|+|+|||||||+.+.|.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999998875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.41  E-value=4.2e-05  Score=52.86  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++|+|+|+|||||||+...|..
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=4.3e-05  Score=52.24  Aligned_cols=22  Identities=27%  Similarity=0.727  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.38  E-value=4.8e-05  Score=52.43  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++|+++|+|||||||+...|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999998863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=4.7e-05  Score=52.07  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=4.7e-05  Score=51.98  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      ++|+|+|+|||||||..+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998885

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.32  E-value=8e-05  Score=51.44  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +..|+|+|+|||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.32  E-value=5.4e-05  Score=50.93  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|.|+|||||||+.+.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=6.2e-05  Score=50.63  Aligned_cols=19  Identities=21%  Similarity=0.433  Sum_probs=17.3

Q ss_pred             EEEcCCCCcHHHHHHHHhc
Q 027985           19 LLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        19 ~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|.+|||||||+++|..
T Consensus         5 ~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           5 QVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHH
Confidence            5999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00012  Score=49.72  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .+.=|+++|.||||||||++++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345788999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=9.3e-05  Score=51.06  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988853

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=7.8e-05  Score=49.59  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=9e-05  Score=49.85  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027985           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~   36 (216)
                      .+|+++|++||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            468999999999999988874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.14  E-value=0.00015  Score=48.89  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..+-|+++|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457789999999999999888753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00012  Score=49.72  Aligned_cols=20  Identities=40%  Similarity=0.707  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      .|+|.|++|+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999885

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00028  Score=51.57  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=39.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc---cceeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFI---TTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   76 (216)
                      ....=|.|+|+.++|||+|+|.|++....-...   ...|.........+ .+....+.++||.|...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            346678899999999999999998765321111   11122232222222 23335788999999644

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00015  Score=50.55  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0001  Score=50.66  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..+-|+++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999998853

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.08  E-value=0.00014  Score=49.45  Aligned_cols=19  Identities=21%  Similarity=0.263  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027985           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~   36 (216)
                      |+|.|.+||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7889999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=6.9e-05  Score=51.23  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|+|++|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00015  Score=48.68  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      =++|+|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999998653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .|+|+|+.|||||||++.+.+--
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999888754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00014  Score=49.65  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999998754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.02  E-value=0.00016  Score=48.38  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      +|+++|++||||||+.+.|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00018  Score=49.34  Aligned_cols=21  Identities=38%  Similarity=0.667  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|+|++||||+||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.99  E-value=0.00024  Score=51.41  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=22.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..+.+.-|++.|+||+|||||++.+.+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3444556999999999999999998654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.99  E-value=0.00019  Score=49.00  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=17.2

Q ss_pred             eEEE-EEcCCCCcHHHHHHHHh
Q 027985           16 IKLL-LIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~-v~G~~~sGKstli~~l~   36 (216)
                      +||+ |.|.+||||||+++.|.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3554 57999999999999884

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.98  E-value=0.00019  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+++..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36799999999999999998755

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.95  E-value=0.00022  Score=47.94  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.93  E-value=0.00024  Score=50.82  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .++|+|+.|||||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6789999999999999988754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00036  Score=48.07  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .--|+|+|+|||||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.90  E-value=0.00025  Score=51.12  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+++-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58999999999999999887643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.90  E-value=0.00025  Score=47.63  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999998764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00026  Score=50.18  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46899999999999999887643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.88  E-value=0.00026  Score=50.14  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -+.|+|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            46899999999999999776643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00028  Score=48.54  Aligned_cols=20  Identities=45%  Similarity=0.680  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027985           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~   37 (216)
                      |+|+|++|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.87  E-value=0.00035  Score=47.89  Aligned_cols=27  Identities=26%  Similarity=0.148  Sum_probs=22.4

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ....++-|.|-|.+|||||||.+.|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344567799999999999999999853

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.00026  Score=48.77  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00029  Score=50.68  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|||||||++.+.+--
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            67999999999999999887643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.86  E-value=0.00029  Score=47.46  Aligned_cols=20  Identities=15%  Similarity=0.463  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37899999999999998884

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00031  Score=49.98  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....+++.|+||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999998754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.85  E-value=0.0003  Score=50.04  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++++|+.|+|||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            4689999999999999998754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00034  Score=48.80  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      =|+|+|++|||||||++.|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3689999999999999999754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.81  E-value=0.00034  Score=49.80  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999888754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00034  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++|+|+.|+|||||++.+++-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47899999999999999988743

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.73  E-value=0.00029  Score=49.80  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++++|+.|+|||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            6899999999999999998864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00038  Score=49.60  Aligned_cols=23  Identities=35%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -+.++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            36899999999999999887754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.69  E-value=0.00045  Score=49.18  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46899999999999999887754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.69  E-value=0.00044  Score=49.39  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            368999999999999999988653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.00065  Score=45.03  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..-|++-|+-|+|||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            345888999999999999998743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00055  Score=47.77  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ++-|+|.|.+|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.67  E-value=0.00025  Score=49.61  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      +......+-|.+.|.||||||||.+.|...
T Consensus        18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            334556678999999999999999988643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00036  Score=49.58  Aligned_cols=22  Identities=45%  Similarity=0.658  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -+.++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.63  E-value=0.00031  Score=50.59  Aligned_cols=22  Identities=32%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      +++|+|+.|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999999999977653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00051  Score=48.78  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..+++.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999988654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.58  E-value=0.00065  Score=50.71  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .+|+|.|.+|||||||+++|+....
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            3589999999999999999987553

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.00074  Score=48.08  Aligned_cols=23  Identities=35%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      +.++|+.|+|||||++.+.+-..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            57999999999999999987653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.53  E-value=0.0009  Score=47.93  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ....|++.|+||+|||+|++.+.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3567999999999999999998753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.53  E-value=0.00065  Score=48.99  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .+.|+|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            46899999999999999998643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.51  E-value=0.00075  Score=47.27  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      .+.|+|-|+|||||||....|.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4778899999999999999885

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.50  E-value=0.00068  Score=48.80  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      +.++|+.|+|||||++.+++-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            5899999999999999998864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.49  E-value=0.001  Score=45.47  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      +++-|+|.|.+||||||+.+.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            46789999999999999999886543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.49  E-value=0.00038  Score=49.62  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999988754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.43  E-value=0.00089  Score=45.96  Aligned_cols=28  Identities=25%  Similarity=0.377  Sum_probs=23.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      +...++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3445578999999999999999988654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00099  Score=45.74  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      +++++|+||+|||+++..|..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            679999999999999988754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.40  E-value=0.00085  Score=47.34  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ..+++.|++|+||||+++.+....
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999887543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.0012  Score=47.15  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .-.+++.|+||+||||++..+....
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999998654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.0011  Score=49.23  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.|+++||||+|||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999998753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0012  Score=47.70  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      =+++++|+||+|||+++..|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3688999999999999988753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.27  E-value=0.0013  Score=47.25  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..-.++|.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.21  E-value=0.0012  Score=47.78  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456799999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.15  E-value=0.0013  Score=47.28  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .|+|.|++|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477999999999999998864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0015  Score=45.57  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      -|+|.|+|||||+|+...|.
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46778999999999998874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.12  E-value=0.0015  Score=46.78  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.|++.|+||+|||+|++.+...
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            346999999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0015  Score=46.01  Aligned_cols=22  Identities=27%  Similarity=0.676  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999998754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.0019  Score=44.57  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0016  Score=46.40  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ...+++.|++|+||||++..+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            345899999999999999988653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.0019  Score=46.50  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .-.|++.|+||+|||+|++++....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            4469999999999999999988753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0028  Score=46.72  Aligned_cols=27  Identities=19%  Similarity=0.146  Sum_probs=22.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHh
Q 027985           10 ADYDYLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ..+..++-|+|.|.+|||||||.+.|.
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            345567899999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.002  Score=45.16  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0022  Score=44.91  Aligned_cols=22  Identities=18%  Similarity=0.508  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .+++.|++|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            5899999999999999887643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0022  Score=46.14  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..-.+++.|+||+|||++++.+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3456899999999999999998753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0025  Score=46.02  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      .-.|++.|++|+|||+|++++.+.-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4569999999999999999997655

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.56  E-value=0.003  Score=49.09  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~   36 (216)
                      .-+|+++||+|||||-|.++|.
T Consensus        49 ksNILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999984

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0034  Score=43.47  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027985           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~   37 (216)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0045  Score=42.59  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      +.|.|+||+|||+|...|.....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            57999999999999988875443

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.36  E-value=0.0037  Score=46.54  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++..++|+|=|.-|+||||+++.|...-
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999999987653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.0079  Score=43.74  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHH
Q 027985           12 YDYLIKLLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        12 ~~~~~~i~v~G~~~sGKstli~~l   35 (216)
                      ...++=|.|-|.+|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            345688999999999999998765

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0076  Score=41.64  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      +-|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            457899999999999999886443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.19  E-value=0.0052  Score=44.57  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-|+|.|+.|+|||||...+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999988654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.18  E-value=0.0071  Score=40.63  Aligned_cols=25  Identities=40%  Similarity=0.614  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .-|++.|++|+||||+.-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999887654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.13  E-value=0.0094  Score=41.02  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0054  Score=43.11  Aligned_cols=23  Identities=26%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|.|+||+|||+|...+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36799999999999998886543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0056  Score=42.43  Aligned_cols=30  Identities=13%  Similarity=0.094  Sum_probs=21.5

Q ss_pred             cEEEEecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985          154 KFFETSAKTNFNVEQVFFSIAREIKQRLVESD  185 (216)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~  185 (216)
                      .++.+.+.  ..++++.+.|...+.+...+..
T Consensus       171 ~~~~IDa~--~~~e~V~~~I~~~v~~~l~~~~  200 (209)
T d1nn5a_         171 NWKMVDAS--KSIEAVHEDIRVLSEDAIATAT  200 (209)
T ss_dssp             CEEEEETT--SCHHHHHHHHHHHHHHHHHHGG
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHHHHHhcc
Confidence            46777753  4789998888887777766554

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.07  E-value=0.0076  Score=40.51  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.05  E-value=0.003  Score=47.12  Aligned_cols=20  Identities=35%  Similarity=0.627  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      .|++.|+||+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            68999999999999999885

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.02  E-value=0.0061  Score=46.00  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .+++.|+||+|||+|...+.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.02  E-value=0.0062  Score=43.05  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      ++|.|+||+|||+|...+.....
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhh
Confidence            57999999999999888865443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.0044  Score=47.21  Aligned_cols=20  Identities=35%  Similarity=0.728  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      +++++|+||+|||+++..|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            45899999999999986553

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0039  Score=43.90  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.|+|-|..||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999987653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.82  E-value=0.011  Score=43.99  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..++|+|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999988764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0017  Score=44.41  Aligned_cols=18  Identities=39%  Similarity=0.601  Sum_probs=16.1

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 027985           19 LLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        19 ~v~G~~~sGKstli~~l~   36 (216)
                      +|+|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999974

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.72  E-value=0.0085  Score=42.13  Aligned_cols=22  Identities=36%  Similarity=0.703  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|.|+||+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3679999999999999888654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.0086  Score=42.13  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      --|+|=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999998653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.63  E-value=0.0087  Score=45.82  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      |+|.|++||||||.+..++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            7899999999999999987654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.57  E-value=0.012  Score=39.26  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDDSF   40 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~~~   40 (216)
                      ..-|++.|++|+||||+.-.|....+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            35689999999999999988887654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.47  E-value=0.0096  Score=44.93  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .-.++++|++|+|||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45699999999999999999853

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.39  E-value=0.011  Score=41.44  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      -++|.|+||+|||+|...+...-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            35799999999999998886543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.36  E-value=0.012  Score=40.89  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      +++.|++|+|||-|++++.+.-
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999987653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.32  E-value=0.014  Score=43.30  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      ..++|+|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.31  E-value=0.0052  Score=44.72  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      =|.|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            38999999999999998863

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.013  Score=43.33  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++++|++|+|||.|.+.|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            588999999999999998854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.015  Score=41.00  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -++|.|+||+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999888754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.01  E-value=0.014  Score=40.39  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+|-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999987643

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.0092  Score=43.56  Aligned_cols=19  Identities=26%  Similarity=0.571  Sum_probs=16.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027985           16 IKLLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l   35 (216)
                      +. +++|+.|+||||++.++
T Consensus        26 ln-vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VT-AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EE-EEECCTTTCSTHHHHHH
T ss_pred             eE-EEECCCCCcHHHHHHHH
Confidence            44 69999999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.016  Score=39.92  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.97  E-value=0.013  Score=40.12  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -.+++.|++++|||.|+..|+.-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            35789999999999999887653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.92  E-value=0.016  Score=42.83  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~   38 (216)
                      +++.|+||+|||.|.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            344699999999999998653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.017  Score=40.70  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999988753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.83  E-value=0.017  Score=40.15  Aligned_cols=20  Identities=35%  Similarity=0.619  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      -++|.|+||+|||+|...++
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35789999999999987664

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.62  E-value=0.02  Score=41.07  Aligned_cols=19  Identities=26%  Similarity=0.541  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027985           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~   36 (216)
                      ++|.|.||+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5799999999999987775

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.018  Score=43.75  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~   36 (216)
                      ..+. +|+|+.|+|||+++.++.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            3455 588999999999999974

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.023  Score=43.57  Aligned_cols=23  Identities=39%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      -+++|+|.+|+|||+++..++.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            35899999999999998877543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.08  E-value=0.018  Score=41.75  Aligned_cols=15  Identities=27%  Similarity=0.625  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 027985           18 LLLIGDSGVGKSCLL   32 (216)
Q Consensus        18 i~v~G~~~sGKstli   32 (216)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678999999999764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.99  E-value=0.029  Score=39.30  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      -|+|.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.03  Score=39.97  Aligned_cols=19  Identities=37%  Similarity=0.541  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027985           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~   36 (216)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5699999999999987764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.77  E-value=0.024  Score=41.50  Aligned_cols=15  Identities=40%  Similarity=0.789  Sum_probs=13.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 027985           18 LLLIGDSGVGKSCLL   32 (216)
Q Consensus        18 i~v~G~~~sGKstli   32 (216)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.42  E-value=0.038  Score=39.65  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           15 LIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        15 ~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      .-.+++.|++++|||+|++.+..-
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHH
Confidence            346788999999999999988653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.041  Score=41.29  Aligned_cols=18  Identities=22%  Similarity=0.541  Sum_probs=15.2

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027985           18 LLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l   35 (216)
                      ++|.|+||+||||++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            578999999999987553

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.90  E-value=0.33  Score=33.25  Aligned_cols=76  Identities=12%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCCCCHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKRAVPTA  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~  142 (216)
                      +.+.|+|+++...  ......+..+|.++++...+ ..++..+.+....+...   +.|++ +|+|+.+..+  ......
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~--~~~~~~  183 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD--RDIPPE  183 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT--TCCCHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc--chhhhH
Confidence            5789999998543  22334466799999988765 56677776666666543   56665 7889998643  334444


Q ss_pred             HHHHH
Q 027985          143 KGQEL  147 (216)
Q Consensus       143 ~~~~~  147 (216)
                      ..+.+
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44433

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.78  E-value=0.054  Score=39.18  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      |++|+|.+|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999988764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.62  E-value=0.071  Score=33.07  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985           14 YLIKLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        14 ~~~~i~v~G~~~sGKstli~~l~~~   38 (216)
                      ..+.|.+.|..|+||+||.++|...
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHH
Confidence            4588999999999999999998643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.07  E-value=0.055  Score=39.74  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027985           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~   37 (216)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            567889999999999988753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.1  Score=37.19  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027985           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|.|++++|||+|.-.++.
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            47999999999999877654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.78  E-value=0.099  Score=36.87  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027985           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .-|+|.|++|+||+.+.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4589999999999999998864

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.35  E-value=0.16  Score=33.96  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 027985           18 LLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~~~   39 (216)
                      ++|+|...||||.+...+....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999987543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.31  E-value=0.16  Score=36.36  Aligned_cols=22  Identities=36%  Similarity=0.762  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999998887644

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.15  Score=35.57  Aligned_cols=18  Identities=28%  Similarity=0.379  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027985           18 LLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l   35 (216)
                      ++|.|+..+||||+++++
T Consensus        44 ~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHH
Confidence            579999999999999986

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.91  E-value=0.16  Score=35.15  Aligned_cols=18  Identities=33%  Similarity=0.482  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027985           18 LLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l   35 (216)
                      ++|.|+..+||||+++++
T Consensus        38 ~iiTGpN~~GKSt~lk~i   55 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQT   55 (224)
T ss_dssp             EEEESCSSSSHHHHHHHH
T ss_pred             EEEECCCccccchhhhhh
Confidence            689999999999999885

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=87.30  E-value=0.92  Score=29.84  Aligned_cols=49  Identities=16%  Similarity=0.173  Sum_probs=28.4

Q ss_pred             ccccccEEEEEEECCCh--hhHH--------HHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           84 YYRGAMGILLVYDVTDE--SSFN--------NIRNWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~--~s~~--------~~~~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                      .+.++|++|++......  ++..        -++.+-..+..+...+..+++|.|-.|.
T Consensus        97 ~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          97 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence            46788988888755432  1221        2333445555665555666777787774

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.12  E-value=0.19  Score=35.50  Aligned_cols=88  Identities=15%  Similarity=0.150  Sum_probs=51.6

Q ss_pred             EEEEEEeCCCcccccccc-ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcE-EEEEeCCCCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTIT-TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNK-ILVGNKADMDESKRAVP  140 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~-ivv~nK~D~~~~~~~~~  140 (216)
                      +.+.++|+|+.-...... ......+|.++++.+. +..++..+......+..... .+.++ -+|.|+.+...     .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~-----~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN-----E  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC-----C
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC-----c
Confidence            468899998744322211 1222447777777766 45677666665555554332 22332 36779887533     3


Q ss_pred             HHHHHHHHHHhCCcEEE
Q 027985          141 TAKGQELADEYGIKFFE  157 (216)
Q Consensus       141 ~~~~~~~~~~~~~~~~~  157 (216)
                      .+..+.+.+..+..++.
T Consensus       190 ~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         190 YELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHHTCCEEE
T ss_pred             cchhhhhHhhcCCeEEE
Confidence            45677788888876543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=0.14  Score=37.24  Aligned_cols=14  Identities=43%  Similarity=0.688  Sum_probs=12.9

Q ss_pred             EEEcCCCCcHHHHH
Q 027985           19 LLIGDSGVGKSCLL   32 (216)
Q Consensus        19 ~v~G~~~sGKstli   32 (216)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999975

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.43  E-value=0.2  Score=33.94  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~sGKstli~~l~~   37 (216)
                      .....+++.|++|+|||++...+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999988765

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.88  E-value=0.15  Score=37.15  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=13.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 027985           18 LLLIGDSGVGKSCLL   32 (216)
Q Consensus        18 i~v~G~~~sGKstli   32 (216)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            389999999999974

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=0.61  Score=29.19  Aligned_cols=43  Identities=12%  Similarity=0.173  Sum_probs=26.9

Q ss_pred             cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985           85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE  134 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  134 (216)
                      +.+.|+  +.+|  +-+.++++..+...+...   ++++++.+-..|-..
T Consensus        71 ~~~~d~--I~ID--EaQFf~dl~~~~~~~~~~---~~~Viv~GLd~Df~~  113 (133)
T d1xbta1          71 ALGVAV--IGID--EGQFFPDIVEFCEAMANA---GKTVIVAALDGTFQR  113 (133)
T ss_dssp             HHTCSE--EEES--SGGGCTTHHHHHHHHHHT---TCEEEEECCSBCTTS
T ss_pred             hcccce--EEee--hhHHHHHHHHHHHHHHhc---CCcEEEEEecccccc
Confidence            445553  3333  356666676666655543   688888888888643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.48  E-value=0.18  Score=36.84  Aligned_cols=14  Identities=43%  Similarity=0.688  Sum_probs=13.0

Q ss_pred             EEEcCCCCcHHHHH
Q 027985           19 LLIGDSGVGKSCLL   32 (216)
Q Consensus        19 ~v~G~~~sGKstli   32 (216)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999986

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.47  E-value=0.26  Score=31.29  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=15.3

Q ss_pred             eEEEEEcCCCCcHHH-HHHHHh
Q 027985           16 IKLLLIGDSGVGKSC-LLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~sGKst-li~~l~   36 (216)
                      +. +++|+-.||||| |++++.
T Consensus         4 L~-~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           4 IE-FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EE-EEECSTTSCHHHHHHHHHH
T ss_pred             EE-EEEccccCHHHHHHHHHHH
Confidence            44 478999999999 566653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.46  E-value=0.22  Score=31.15  Aligned_cols=20  Identities=25%  Similarity=0.135  Sum_probs=16.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027985           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~   36 (216)
                      ..+|.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35789999999999876554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.99  E-value=0.32  Score=34.61  Aligned_cols=20  Identities=25%  Similarity=0.300  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027985           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~~   37 (216)
                      +.|.|++++|||+|.-.++.
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            46899999999999877764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.56  E-value=0.25  Score=35.46  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDD   38 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~   38 (216)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            6789999999999998776543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.88  E-value=0.4  Score=34.11  Aligned_cols=19  Identities=21%  Similarity=0.358  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027985           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l~   36 (216)
                      +.|.|++++|||+|.-.+.
T Consensus        63 ~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHH
Confidence            4799999999999976665

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.72  E-value=2.6  Score=28.32  Aligned_cols=82  Identities=13%  Similarity=0.010  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCCCHH
Q 027985           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRAVPTA  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~  142 (216)
                      +.+.|+|+|+....  .....+..+|.+++|.... ..++..+.+....+...   +.+ +-+|+|+.+...     ...
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~-----~~~  178 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLG-----IEM  178 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTT-----HHH
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc---cccccccccccccccc-----ccc
Confidence            45789999986432  2334566789888888764 45566555555444444   234 446789986421     122


Q ss_pred             HHHHHHHHhCCcEE
Q 027985          143 KGQELADEYGIKFF  156 (216)
Q Consensus       143 ~~~~~~~~~~~~~~  156 (216)
                      ..+.+.+..+..++
T Consensus       179 ~~~~i~~~~~~~~~  192 (232)
T d1hyqa_         179 AKNEIEAILEAKVI  192 (232)
T ss_dssp             HHHHHHHHTTSCEE
T ss_pred             hhhhHHhhcCCeEE
Confidence            33455566676554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.62  E-value=0.39  Score=33.91  Aligned_cols=18  Identities=33%  Similarity=0.763  Sum_probs=14.1

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027985           18 LLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        18 i~v~G~~~sGKstli~~l   35 (216)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            356699999999986554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.26  E-value=0.43  Score=34.03  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCcccccccccc-ccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcE-EEEEeCCCCCCCCCCCC
Q 027985           64 IKLQIWDTAGQERFRTITTA-YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNK-ILVGNKADMDESKRAVP  140 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~-ivv~nK~D~~~~~~~~~  140 (216)
                      +.+.++|+|+.-........ ....++.++++... +..++..+.+.+..+.... ..+.++ -+|.|+.+...     .
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~-----~  192 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR-----E  192 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT-----H
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh-----h
Confidence            56788898875422221111 12345656655544 4566666666555554332 223444 36789877422     2


Q ss_pred             HHHHHHHHHHhCCcEEE
Q 027985          141 TAKGQELADEYGIKFFE  157 (216)
Q Consensus       141 ~~~~~~~~~~~~~~~~~  157 (216)
                      .+..+.+.+..+..++.
T Consensus       193 ~~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         193 DELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHcCCeEEE
Confidence            44566777777876554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.98  E-value=0.42  Score=33.93  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=23.7

Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCC
Q 027985           90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-ILVGNKAD  131 (216)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D  131 (216)
                      .+++|... ++-++....+.+..+...   ++|+ -+|+|+.-
T Consensus       200 ~~~lVt~p-e~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v~  238 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEVARTHLELAAI---GLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEES-CHHHHHHHHHHHHHHHHH---TCCCEEEEEEEEC
T ss_pred             eeeEecCc-chhHHHHHHHHHHHHHhc---CCCceEEEEcCCc
Confidence            45555544 356777777777777665   4554 46679863

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.92  E-value=1.5  Score=27.94  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=28.5

Q ss_pred             cccccccEEEEEEECCChh----------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985           83 AYYRGAMGILLVYDVTDES----------SFNNIRNWMRNIDQHAADNVNKILVGNKADM  132 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  132 (216)
                      ..++++|++|+.......+          ...-++.+...+..+..++.-++++.|-+|.
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            4577899888877554321          1223344555555555444555566677774

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.49  E-value=0.35  Score=34.53  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027985           17 KLLLIGDSGVGKSCLLLRFSDDS   39 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l~~~~   39 (216)
                      |+.|+|.+|+|||+|+..+....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            57899999999999987765443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.47  E-value=0.48  Score=31.87  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=16.6

Q ss_pred             eEEEEEcCC-CCcHHHHHHHH
Q 027985           16 IKLLLIGDS-GVGKSCLLLRF   35 (216)
Q Consensus        16 ~~i~v~G~~-~sGKstli~~l   35 (216)
                      -++.|.|-. |+||||+.-.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            378899995 99999997665

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.44  E-value=5.8  Score=27.70  Aligned_cols=19  Identities=26%  Similarity=0.487  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027985           17 KLLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        17 ~i~v~G~~~sGKstli~~l   35 (216)
                      +|+|-|-.|+||||+.-.|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5677899999999986554