Citrus Sinensis ID: 028008

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYFY
cHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHccccHHHHHHcccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccc
ccHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccEEcccccccHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHc
MATVTTQAsaavfrpcasksrfltgssgklnrevalkpvsssasfkveakgewlpglasptylngslpgdngfdplglaedpenLKWYVQAELVNSRWAMLGVVGMLLPEVftkigiinapqwydagkaeyfassSTLFVIEFILFHYVEIRRwqdiknpgsvnqdpifkqyslppnevgypggifnplnfaptdeakekelangnnsaklayfy
matvttqasaavfrpcasksrfltgssgklnrevalkpvsssasfKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKekelangnnsaklayfy
MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYFY
*************************************************KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF************************
****************************************************WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYFY
*********AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYFY
********************************************FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYFY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query215 2.2.26 [Sep-21-2011]
P27521251 Chlorophyll a-b binding p yes no 0.953 0.816 0.851 1e-100
Q9SQL2252 Chlorophyll a-b binding p N/A no 0.990 0.845 0.843 7e-99
Q36718231 Chlorophyll a-b binding p N/A no 0.809 0.753 0.679 4e-63
P13869270 Chlorophyll a-b binding p N/A no 0.865 0.688 0.515 9e-49
P10708270 Chlorophyll a-b binding p N/A no 0.860 0.685 0.492 4e-48
P27522273 Chlorophyll a-b binding p N/A no 0.8 0.630 0.382 2e-23
Q32904275 Chlorophyll a-b binding p N/A no 0.725 0.567 0.408 2e-23
Q01667241 Chlorophyll a-b binding p no no 0.669 0.597 0.369 1e-22
Q9SDM1245 Chlorophyll a-b binding p N/A no 0.693 0.608 0.359 3e-21
P12360246 Chlorophyll a-b binding p N/A no 0.841 0.735 0.323 5e-21
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1 Back     alignment and function desciption
 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/209 (85%), Positives = 188/209 (89%), Gaps = 4/209 (1%)

Query: 1   MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPG 56
           MATVTT ASA++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAK GEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 57  LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
           LASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIG
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
           IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANG 205
            EVGYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANG 209
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1 Back     alignment and function description
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1 Back     alignment and function description
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1 Back     alignment and function description
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1 Back     alignment and function description
>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1 Back     alignment and function description
>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1 Back     alignment and function description
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1 Back     alignment and function description
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
225457389252 PREDICTED: chlorophyll a-b binding prote 0.953 0.813 0.927 1e-107
297733963249 unnamed protein product [Vitis vinifera] 0.948 0.819 0.936 1e-107
255547367251 chlorophyll A/B binding protein, putativ 0.953 0.816 0.922 1e-104
356516812252 PREDICTED: chlorophyll a-b binding prote 0.990 0.845 0.875 1e-104
356508545252 PREDICTED: chlorophyll a-b binding prote 0.990 0.845 0.866 1e-103
388498024252 unknown [Lotus japonicus] 0.990 0.845 0.861 1e-102
224124190251 light-harvesting complex I protein Lhca4 0.953 0.816 0.893 1e-102
118489040251 unknown [Populus trichocarpa x Populus d 0.953 0.816 0.893 1e-102
312281571251 unnamed protein product [Thellungiella h 0.990 0.848 0.857 1e-102
100801744251 chlorophyll a/b binding protein [Solanum 0.953 0.816 0.865 1e-102
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis vinifera] gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/208 (92%), Positives = 202/208 (97%), Gaps = 3/208 (1%)

Query: 1   MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAK-GEWLPGL 57
           MATVTTQASAAVFRPCASKSRFLTGSSGKL REV++KP++SS+  SFKVEAK GEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPGL 60

Query: 58  ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
           +SP+YL+GSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV GMLLPEVFTKIGI
Sbjct: 61  SSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGI 120

Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPN 180

Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
           EVGYPGGIFNPLNFAPT+EAKEKELANG
Sbjct: 181 EVGYPGGIFNPLNFAPTEEAKEKELANG 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa] gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
TAIR|locus:2079117251 LHCA4 "light-harvesting chloro 0.986 0.844 0.834 2.3e-94
TAIR|locus:2082767257 LHCA2 "photosystem I light har 0.897 0.750 0.497 5.4e-47
TAIR|locus:2202150270 Lhca6 "photosystem I light har 0.986 0.785 0.415 1.8e-39
TAIR|locus:2825741256 Lhca5 "photosystem I light har 0.767 0.644 0.477 1.3e-36
TAIR|locus:2082717241 LHCA1 "photosystem I light har 0.790 0.705 0.363 7.8e-23
TAIR|locus:2200868273 LHCA3 "photosystem I light har 0.888 0.699 0.356 7e-22
TAIR|locus:2036209258 LHCB6 "light harvesting comple 0.669 0.558 0.361 3.9e-21
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.934 0.758 0.325 5.8e-18
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.902 0.726 0.328 4.1e-17
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.902 0.726 0.328 4.1e-17
TAIR|locus:2079117 LHCA4 "light-harvesting chlorophyll-protein complex I subunit A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 181/217 (83%), Positives = 192/217 (88%)

Query:     1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPG 56
             MATVTT ASA++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAK GEWLPG
Sbjct:     1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query:    57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
             LASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIG
Sbjct:    61 LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query:   117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
             IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct:   121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query:   177 NEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAY 213
              EVGYPGGIFNPLNFAPT EAKEKELANG   A LA+
Sbjct:   181 GEVGYPGGIFNPLNFAPTQEAKEKELANGR-LAMLAF 216
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS;NAS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0010287 "plastoglobule" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0080167 "response to karrikin" evidence=IEP
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
TAIR|locus:2082767 LHCA2 "photosystem I light harvesting complex gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202150 Lhca6 "photosystem I light harvesting complex gene 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825741 Lhca5 "photosystem I light harvesting complex gene 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082717 LHCA1 "photosystem I light harvesting complex gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200868 LHCA3 "photosystem I light harvesting complex gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036209 LHCB6 "light harvesting complex photosystem II subunit 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SQL2CB24_PEANo assigned EC number0.84330.99060.8452N/Ano
P27521CA4_ARATHNo assigned EC number0.85160.95340.8167yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 1e-147
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 8e-60
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 9e-57
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 2e-54
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 5e-37
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-35
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 3e-29
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 6e-27
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 1e-26
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 2e-19
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 6e-19
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 1e-17
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 2e-10
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 9e-07
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 6e-05
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 7e-05
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information 
 Score =  410 bits (1054), Expect = e-147
 Identities = 192/208 (92%), Positives = 199/208 (95%), Gaps = 3/208 (1%)

Query: 1   MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEA-KGEWLPGL 57
           MATVTTQASAAVFRPC+SKSRFL+GSS KLNRE++ KP+ SSA  SFKVEA KGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCSSKSRFLSGSSSKLNRELSFKPMPSSATRSFKVEAKKGEWLPGL 60

Query: 58  ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
           ASP YLNGSLPGDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGI
Sbjct: 61  ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
           INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
           EVGYPGGIFNPLNFAPT+EAKEKELANG
Sbjct: 181 EVGYPGGIFNPLNFAPTEEAKEKELANG 208

Length = 250
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 215
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.96
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 99.58
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.56
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.53
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 99.49
PLN00187286 photosystem II light-harvesting complex II protein 99.47
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 99.45
PLN00099243 light-harvesting complex IChlorophyll A-B binding 99.43
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 99.39
PLN00171324 photosystem light-harvesting complex -chlorophyll 99.37
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.36
PLN00170255 photosystem II light-harvesting-Chl-binding protei 99.32
PLN00101250 Photosystem I light-harvesting complex type 4 prot 99.26
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 99.26
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.21
PHA0233735 putative high light inducible protein 97.43
PLN00014250 light-harvesting-like protein 3; Provisional 96.41
PHA0233735 putative high light inducible protein 96.0
PLN00084214 photosystem II subunit S (PsbS); Provisional 94.86
PLN00084214 photosystem II subunit S (PsbS); Provisional 91.55
PLN00014250 light-harvesting-like protein 3; Provisional 87.62
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.3e-61  Score=419.93  Aligned_cols=213  Identities=90%  Similarity=1.443  Sum_probs=187.5

Q ss_pred             CccccccccceeeccCccccccccCCCCcchhhccccccCC--CCcceee-cccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 028008            1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSS--SASFKVE-AKGEWLPGLASPTYLNGSLPGDNGFDPLG   77 (215)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~w~P~~~~p~~l~g~~PGd~gfDPlg   77 (215)
                      ||++++++..+.+.++..+++|+.+++.+..+....++.++  ++++++. +|+.|+|++++|+||||++|||+||||+|
T Consensus         1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlG   80 (250)
T PLN00101          1 MATVTTQASAAVFRPCSSKSRFLSGSSSKLNRELSFKPMPSSATRSFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLG   80 (250)
T ss_pred             CchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCcccCCCCCCccCCCccc
Confidence            89999999998888888899998655544433322222221  3344444 58999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCCCcccccccchhhccchhHHHHHHHHHHHHHHHHHhhcc
Q 028008           78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI  157 (215)
Q Consensus        78 l~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~~p~w~~ag~~~~~~~~p~l~~~qi~lig~vE~~r~~~~  157 (215)
                      |++|+++++|||++||+||||||||++|+++||++++.|++..|.||+++..+|+....+++++|+++|+++|++||+++
T Consensus        81 l~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~  160 (250)
T PLN00101         81 LAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI  160 (250)
T ss_pred             cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999988888999999888888888999999999999999999999


Q ss_pred             cCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcchHhhhhccc
Q 028008          158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF  214 (215)
Q Consensus       158 ~~pg~~~~~~~~~~~~~~~~d~gyPGg~FDPLgl~~~~e~k~kEIkNGR~LAMlA~l  214 (215)
                      ++||+++.++.|.++.++++|.+||||.||||||++.+++|+||||||| |||+|++
T Consensus       161 ~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~~~~k~kEIKNGR-LAM~A~l  216 (250)
T PLN00101        161 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGR-LAMLAFL  216 (250)
T ss_pred             cCCCcccccccccccccCCccccCCCCccCccCCCccHHHHHHHHhhcc-hHHHHHh
Confidence            9999998888888777888999999999999999988999999999999 9999985

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 1e-100
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 2e-63
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 3e-61
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 4e-48
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 3e-45
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 5e-36
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 2e-25
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 1e-23
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 5e-22
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 3e-18
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 2e-15
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 7e-15
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 1e-14
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 2e-14
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 1e-13
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 9e-13
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure 
Iteration: 1

 Score =  359 bits (921), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/208 (86%), Positives = 186/208 (89%), Gaps = 3/208 (1%)
Query: 1   MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGL 57
           MATVTTQASAA+F PC  KSRFL GSSGKLNR VA +PV  S SASFKVEAK GEWLPGL
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 58  ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
           ASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61  ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
           IN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
           EVGYPGGIFNPLNFAPT EAKEKE+ANG
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANG 208
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 2e-60
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 3e-44
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 2e-06
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 1e-36
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 4e-08
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 3e-32
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 6e-06
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 1e-31
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 1e-06
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 3e-23
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 3e-06
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
 Score =  188 bits (478), Expect = 2e-60
 Identities = 173/208 (83%), Positives = 179/208 (86%), Gaps = 3/208 (1%)

Query: 1   MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS---FKVEAKGEWLPGL 57
           MATVTTQASAA+F PC  KSRFL GSSGKLNR VA +PV  S S        KGEWLPGL
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60

Query: 58  ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
           ASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61  ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
           IN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180

Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
           EVGYPGGIFNPLNFAPT EAKEKE+ANG
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANG 208
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.47
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.45
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.43
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 99.38
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.3
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 99.04
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
Probab=100.00  E-value=8e-55  Score=382.09  Aligned_cols=212  Identities=84%  Similarity=1.334  Sum_probs=123.2

Q ss_pred             CccccccccceeeccCccccccccCCCCcchhhccc-cccC-CCCcceee-cccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 028008            1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVAL-KPVS-SSASFKVE-AKGEWLPGLASPTYLNGSLPGDNGFDPLG   77 (215)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~w~P~~~~p~~l~g~~PGd~gfDPlg   77 (215)
                      ||+++++++.++++++..++++++.+++.+.+.... +..+ +.++.... +|++|+|+.++|+||||++|||+||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlG   80 (251)
T 2wsc_4            1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLG   80 (251)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CchhhccccccccCccccccchhhccccccccccccccccccccccccCcchhhhccCCCCCccccCCCcCCCCCCCccc
Confidence            889999998888888877888887766544332221 1111 23333444 58999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCCCcccccccchhhccchhHHHHHHHHHHHHHHHHHhhcc
Q 028008           78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI  157 (215)
Q Consensus        78 l~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~~p~w~~ag~~~~~~~~p~l~~~qi~lig~vE~~r~~~~  157 (215)
                      |++|||+++|+|++|||||||||||++|++++|++++.|+++.|.||+++...|+.+.++++++|+++||++|.+||+++
T Consensus        81 l~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~  160 (251)
T 2wsc_4           81 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDI  160 (251)
T ss_dssp             CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999988888999988777887778888999999999999999999


Q ss_pred             cCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcchHhhhhccc
Q 028008          158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF  214 (215)
Q Consensus       158 ~~pg~~~~~~~~~~~~~~~~d~gyPGg~FDPLgl~~~~e~k~kEIkNGR~LAMlA~l  214 (215)
                      .+||+++.++.|.....+..|.+||||.||||++.+.+++|+||||||| | ||||+
T Consensus       161 ~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~~~~~k~kELkNGR-L-MlAil  215 (251)
T 2wsc_4          161 KNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGR-L-MLAFL  215 (251)
T ss_dssp             SSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCSSSSCTTHHHHHHH-T-TTTHH
T ss_pred             cCCCcccccccccccccccccccCCCCccCccchhHHHHHHHHHHhcch-h-HHHHH
Confidence            9999998888877655555677899999999999988889999999999 9 99985
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 215
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 4e-35
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 4e-07
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  121 bits (305), Expect = 4e-35
 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 53  WLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
           +L   +   P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE
Sbjct: 11  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 70

Query: 111 VFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRW-QDIKNPGSVNQDPI 168
           +  + G+      W+ AG   +            ++     +  W   +   G+V    I
Sbjct: 71  LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 130

Query: 169 FKQYSLPPNEVGYPGGIFNPLNFAPTDEAKE----KELANG 205
                    +  YPGG F+PL  A   EA      KE+ NG
Sbjct: 131 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG 171
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.4
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=9.7e-44  Score=303.11  Aligned_cols=155  Identities=35%  Similarity=0.628  Sum_probs=118.4

Q ss_pred             ceeecccCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCc-CCCc
Q 028008           45 FKVEAKGEWLPG--LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAP  121 (215)
Q Consensus        45 ~~~~~~~~w~P~--~~~p~~l~g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~-~~~p  121 (215)
                      +.-.+|++|+|.  .+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|++++|++++.+. ...+
T Consensus         3 ~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~~~   82 (218)
T d1rwta_           3 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   82 (218)
T ss_dssp             TSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCC
T ss_pred             CCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCCCc
Confidence            345689999974  3689999999999999999999999999999999999999999999999999999876654 3445


Q ss_pred             ccccccchh-------h--------ccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 028008          122 QWYDAGKAE-------Y--------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF  186 (215)
Q Consensus       122 ~w~~ag~~~-------~--------~~~~p~l~~~qi~lig~vE~~r~~~~~~pg~~~~~~~~~~~~~~~~d~gyPGg~F  186 (215)
                      .|+++....       +        +..+...+.+++.+++.+|..|....  +       ..     ...+..||||.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~-------~~-----~~~~~~~~~g~f  148 (218)
T d1rwta_          83 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG--P-------LG-----EVVDPLYPGGSF  148 (218)
T ss_dssp             SHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCB--T-------TB-----CCSSSSCCCGGG
T ss_pred             ccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCC--C-------cc-----cccCCCCCCCCc
Confidence            666543211       1        11222334445567899998875421  1       11     134567888899


Q ss_pred             CCCCCCCC----HHHHHHHHhcchHhhhhccc
Q 028008          187 NPLNFAPT----DEAKEKELANGNNSAKLAYF  214 (215)
Q Consensus       187 DPLgl~~~----~e~k~kEIkNGR~LAMlA~l  214 (215)
                      |||++.+.    +++|+||||||| ||||||+
T Consensus       149 dPlg~~~~~e~~~~~k~kElkNGR-LAMlAi~  179 (218)
T d1rwta_         149 DPLGLADDPEAFAELKVKEIKNGR-LAMFSMF  179 (218)
T ss_dssp             CTTCTTCSHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHHhH-HHHHHHH
Confidence            99999884    357999999999 9999985
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure