Citrus Sinensis ID: 028011

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
MLTRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT
cHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccEEcccccccEEEcccccccccccHHHHHHHcccHHHHHHHccccccccccccccccEEEccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHccccccccc
cHHHHHHHHHcHHHccccccccccccccEEEEcccHHHHHccccccccccccEEEEHHHHHHHccccccccccccccccccEEEEEEccEEEEEEccccHHEEEcccHHHccccccccHHHHcccHHHHHHHHHHHHHcccccccccEEEEccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcEEccccccccccc
MLTRRLIRFllpatqlpqatnsstfpksrtsvsdnslatrakaktisvgdrgvGVTAVSVTMsfssdqrsedghfklsESAALVINkgditkwsvdgssdaivnpanermlggggadgaihraagpelreacckvpevrpevrcpigearitpgfklpashvihtvgpiydadsnpeasLRNAYKNSLSVAKENNIQYIAFTAIScgvygylflt
MLTRRLIRFllpatqlpqatnsstfpksrtsvsdnslatrakaktisvgdrgvgVTAVSVTMSfssdqrsedghFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARitpgfklpaSHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT
MLTRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT
*****LIRFLL****************************************GVGVTAVS*********************AALVINKGDITKWSVDGS*DAIV*************DGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDA**********AYKNSLSVAKENNIQYIAFTAISCGVYGYLFL*
****RLI*FLLPATQLPQAT*************************ISVGDRGV**************************SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT
MLTRRLIRFLLPATQLPQA*******************TRAKAKTISVGDRGVGVTAVSVTMSF*********HFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT
**TRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSF*************SESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLTRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query215 2.2.26 [Sep-21-2011]
Q8P5Z8179 Macro domain-containing p yes no 0.572 0.687 0.578 1e-35
Q8PHB6179 Macro domain-containing p yes no 0.572 0.687 0.570 5e-35
Q87JZ5170 Macro domain-containing p yes no 0.581 0.735 0.561 2e-31
Q88SK6172 Macro domain-containing p yes no 0.534 0.668 0.547 2e-30
Q9HXU7173 Macro domain-containing p yes no 0.544 0.676 0.531 3e-29
B7LT90177 O-acetyl-ADP-ribose deace yes no 0.553 0.672 0.547 1e-28
Q8Y2K1171 Macro domain-containing p yes no 0.534 0.672 0.539 1e-28
D2TT52177 O-acetyl-ADP-ribose deace yes no 0.553 0.672 0.571 4e-28
Q8KAE4172 Macro domain-containing p yes no 0.534 0.668 0.531 9e-28
P67341179 O-acetyl-ADP-ribose deace yes no 0.572 0.687 0.523 3e-27
>sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1 Back     alignment and function desciption
 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 87/128 (67%), Gaps = 5/128 (3%)

Query: 85  INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
           + +GDIT+  VD     IVN ANE +LGGGG DGAIHRAAGP L EAC  +PEVRP VRC
Sbjct: 5   VWQGDITQLDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRC 60

Query: 145 PIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203
           P GE RIT GF L A H+ HTVGP++ D   N    L N Y  SL +A++  +  IAF A
Sbjct: 61  PTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPA 120

Query: 204 ISCGVYGY 211
           ISCG+YGY
Sbjct: 121 ISCGIYGY 128

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)
>sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=XAC3343 PE=4 SV=2 Back     alignment and function description
>sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=4 SV=1 Back     alignment and function description
>sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_3408 PE=4 SV=1 Back     alignment and function description
>sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3693 PE=4 SV=1 Back     alignment and function description
>sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ymdB PE=3 SV=2 Back     alignment and function description
>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0334 PE=4 SV=1 Back     alignment and function description
>sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobacter rodentium (strain ICC168) GN=ymdB PE=3 SV=2 Back     alignment and function description
>sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT2219 PE=4 SV=1 Back     alignment and function description
>sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ymdB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
357436403233 Appr-1-p processing enzyme family protei 0.865 0.798 0.657 7e-63
23397339239 unknown protein [Arabidopsis thaliana] 0.665 0.598 0.797 1e-61
255559685269 Protein LRP16, putative [Ricinus communi 0.646 0.516 0.812 2e-61
30688336257 appr-1-p processing enzyme family protei 0.665 0.556 0.797 2e-61
297827693256 hypothetical protein ARALYDRAFT_483117 [ 0.674 0.566 0.779 5e-61
20196872193 expressed protein [Arabidopsis thaliana] 0.665 0.740 0.797 6e-61
356552646236 PREDICTED: macro domain-containing prote 0.646 0.588 0.805 8e-61
255636888201 unknown [Glycine max] 0.646 0.691 0.805 9e-61
225448685231 PREDICTED: macro domain-containing prote 0.651 0.606 0.792 2e-60
297736490190 unnamed protein product [Vitis vinifera] 0.651 0.736 0.792 3e-60
>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 142/190 (74%), Gaps = 4/190 (2%)

Query: 22  SSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESA 81
           ++ F  SR  +    L + + A    V  R   ++A++ +   SS+       F LS S 
Sbjct: 2   TTIFTTSRFLLKTLKLTSHSNA----VNLRSFRLSAMNTSAMASSNGNGGVVRFPLSSSN 57

Query: 82  ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPE 141
           AL+I KGDITKWS+DGS+DAIVNPANERMLGGGGADGAIHRAAGP+L  AC  VPEVRP 
Sbjct: 58  ALIIQKGDITKWSIDGSTDAIVNPANERMLGGGGADGAIHRAAGPDLLRACRNVPEVRPG 117

Query: 142 VRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201
           VRCP GEARITPGF LPASHVIHTVGPIYD DSNP ASL +AY+NSL VAKENNIQYIAF
Sbjct: 118 VRCPTGEARITPGFLLPASHVIHTVGPIYDVDSNPAASLASAYRNSLRVAKENNIQYIAF 177

Query: 202 TAISCGVYGY 211
            AISCGVYGY
Sbjct: 178 PAISCGVYGY 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|23397339|gb|AAK93649.2| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255559685|ref|XP_002520862.1| Protein LRP16, putative [Ricinus communis] gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|30688336|ref|NP_030605.2| appr-1-p processing enzyme family protein [Arabidopsis thaliana] gi|24030242|gb|AAN41297.1| unknown protein [Arabidopsis thaliana] gi|330254759|gb|AEC09853.1| appr-1-p processing enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827693|ref|XP_002881729.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] gi|297327568|gb|EFH57988.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|20196872|gb|AAB87596.2| expressed protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356552646|ref|XP_003544674.1| PREDICTED: macro domain-containing protein XCC3184-like [Glycine max] Back     alignment and taxonomy information
>gi|255636888|gb|ACU18777.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
TAIR|locus:2061923257 AT2G40600 "AT2G40600" [Arabido 0.865 0.723 0.664 1.3e-59
UNIPROTKB|E2RAG4324 MACROD1 "Uncharacterized prote 0.655 0.435 0.445 2.8e-27
UNIPROTKB|Q3AEI4181 CHY_0594 "Putative uncharacter 0.586 0.696 0.503 3.5e-27
TIGR_CMR|CHY_0594181 CHY_0594 "conserved hypothetic 0.586 0.696 0.503 3.5e-27
UNIPROTKB|Q74FT0173 ymdB "O-acetyl-ADP-ribose deac 0.530 0.658 0.536 4.5e-27
TIGR_CMR|GSU_0526173 GSU_0526 "conserved hypothetic 0.530 0.658 0.536 4.5e-27
UNIPROTKB|Q9BQ69325 MACROD1 "O-acetyl-ADP-ribose d 0.576 0.381 0.478 9.4e-27
UNIPROTKB|P0A8D6177 ymdB "O-acetyl-ADP-ribose deac 0.553 0.672 0.507 5.2e-26
UNIPROTKB|A1Z1Q3 448 MACROD2 "O-acetyl-ADP-ribose d 0.627 0.301 0.462 2.2e-25
UNIPROTKB|Q2KHU5325 MACROD1 "O-acetyl-ADP-ribose d 0.660 0.436 0.443 3.6e-25
TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 129/194 (66%), Positives = 149/194 (76%)

Query:    20 TNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSE 79
             T+SS+   S  S + N+  T A + + ++  R   +T VS +M+ S D   E   F LS+
Sbjct:    27 TSSSSSRASLISFAVNNFHTIASSSS-TLSSR---LTTVSSSMA-SGD---EGAVFNLSD 78

Query:    80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVR 139
             S+ L I KGDITKWSVD SSDAIVNPANERMLGGGGADGAIHRAAGP+LR AC +VPEVR
Sbjct:    79 SSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEVPEVR 138

Query:   140 PEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYI 199
             P VRCP GEARITPGF LPAS VIHTVGPIYD+D NP+ SL N+YKNSL VAKENNI+YI
Sbjct:   139 PGVRCPTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYI 198

Query:   200 AFTAISCGVYGYLF 213
             AF AISCG+YGY F
Sbjct:   199 AFPAISCGIYGYPF 212
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|E2RAG4 MACROD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AEI4 CHY_0594 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0594 CHY_0594 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQ69 MACROD1 "O-acetyl-ADP-ribose deacetylase MACROD1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8D6 ymdB "O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHU5 MACROD1 "O-acetyl-ADP-ribose deacetylase MACROD1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 2e-65
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 2e-56
pfam01661117 pfam01661, Macro, Macro domain 2e-46
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 3e-41
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 2e-37
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 3e-36
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 4e-36
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 1e-33
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 4e-31
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 5e-27
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 7e-24
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 4e-15
cd02904186 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l 8e-10
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information 
 Score =  199 bits (508), Expect = 2e-65
 Identities = 71/126 (56%), Positives = 86/126 (68%), Gaps = 11/126 (8%)

Query: 87  KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
           +GDITK  VD    AIVN AN  +LGGGG DGAIHRAAGPEL E C ++        CP 
Sbjct: 6   QGDITKLEVD----AIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRG------CPT 55

Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAIS 205
           GEA IT G+ LPA +VIHTVGP++    + EA  L + Y+NSL +A+EN ++ IAF AIS
Sbjct: 56  GEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAIS 115

Query: 206 CGVYGY 211
            GVYGY
Sbjct: 116 TGVYGY 121

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information
>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 215
PRK04143264 hypothetical protein; Provisional 100.0
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 100.0
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.97
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.97
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.96
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 99.95
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.95
PRK13341725 recombination factor protein RarA/unknown domain f 99.9
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.88
PHA02595154 tk.4 hypothetical protein; Provisional 99.69
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 99.09
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 98.75
PF10154510 DUF2362: Uncharacterized conserved protein (DUF236 94.94
TIGR02452266 conserved hypothetical protein TIGR02452. Members 91.82
PHA03033142 hypothetical protein; Provisional 86.54
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-46  Score=329.76  Aligned_cols=178  Identities=31%  Similarity=0.489  Sum_probs=160.2

Q ss_pred             hHHHHHHhcCCCCCCCCcCCCCCCccceeechhhHHHHhhhcccccCCCCcceeeccccccccCCCCCCCceeecCCCce
Q 028011            3 TRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAA   82 (215)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~f~~~~~~~   82 (215)
                      +|+|+|-|| |.+.|..++++     ++.+||+||+.+..++++         ++..+..+             + .+.+
T Consensus        34 ~~~~~r~l~-n~r~p~~~~~~-----~l~~~~~~l~~~~~~~~~---------~~~~~~~~-------------~-~~~~   84 (264)
T PRK04143         34 QQDLLRALA-NVRPALPLSDE-----YLNLQDAYLQDENAERGV---------VDLKDLQP-------------I-KYDN   84 (264)
T ss_pred             HHHHHHHHh-ccCCCCCCCHH-----HHHHHHHHHHHHHhhcCc---------ccHHhcCc-------------c-CCCE
Confidence            689999999 99999888877     899999999999999888         66666532             2 3689


Q ss_pred             EEEEECccceeccCCCCcEEEEcCCCCCCCC-----CcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCCC
Q 028011           83 LVINKGDITKWSVDGSSDAIVNPANERMLGG-----GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKL  157 (215)
Q Consensus        83 I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~-----gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~L  157 (215)
                      |.||+||||++++    |||||+||+.|.++     +||+++||++||++|+++|+++++.+ ++.+++|++++|++|+|
T Consensus        85 i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~-g~~~~~G~a~iT~~~nL  159 (264)
T PRK04143         85 IFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQ-GRKEATGQAKITRAYNL  159 (264)
T ss_pred             EEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHc-CCCCCCceEEEecCCCC
Confidence            9999999999976    99999999999865     89999999999999999999987543 55899999999999999


Q ss_pred             CCceEEEEecccccCC---CChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011          158 PASHVIHTVGPIYDAD---SNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL  214 (215)
Q Consensus       158 ~~k~IIHaVgP~~~~~---~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~  214 (215)
                      ||+||||+|||.|+.+   ....+.|++||++||++|.+++++|||||+||||+||||++
T Consensus       160 p~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~  219 (264)
T PRK04143        160 PAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKE  219 (264)
T ss_pred             CCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHH
Confidence            9999999999999873   24578999999999999999999999999999999999985

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans Back     alignment and domain information
>TIGR02452 conserved hypothetical protein TIGR02452 Back     alignment and domain information
>PHA03033 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 1e-26
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 2e-25
3q6z_A214 Human Parp14 (Artd8)-Macro Domain 1 In Complex With 5e-16
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 4e-12
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 4e-12
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 4e-12
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 5e-12
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 5e-12
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 1e-11
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 5e-09
1vhu_A211 Crystal Structure Of A Putative Phosphoesterase Len 9e-09
1hjz_A192 Crystal Structure Of Af1521 Protein Containing A Ma 1e-08
2bfr_A192 The Macro Domain Is An Adp-Ribose Binding Module Le 1e-08
4gvw_A199 Three-Dimensional Structure Of The De Novo Designed 1e-08
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 1e-08
1zr5_A214 Crystal Structure Of The Macro-Domain Of Human Core 1e-06
3gqe_A168 Crystal Structure Of Macro Domain Of Venezuelan Equ 2e-06
3ewo_A177 Ibv Nsp3 Adrp Domain Length = 177 2e-04
4gua_A 670 Alphavirus P23pro-Zbd Length = 670 7e-04
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 82/128 (64%), Gaps = 7/128 (5%)
Query: 85  INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
           + +GDITK +VD     IVN AN  + GGGG DGAIHRAAGP L +AC KV + + +  C
Sbjct: 7   VVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQGD--C 60
Query: 145 PIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203
           P G A IT    LPA  V+HTVGP++   + N +  L++AY NSL +   N+   +AF A
Sbjct: 61  PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120
Query: 204 ISCGVYGY 211
           IS GVYGY
Sbjct: 121 ISTGVYGY 128
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase Length = 211 Back     alignment and structure
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a Domain Length = 192 Back     alignment and structure
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module Length = 192 Back     alignment and structure
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine Hydrolase 2bfq_3, Northeast Structural Genomics Consortium (Nesg) Target Or248 Length = 199 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214 Back     alignment and structure
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine Encephalitis Virus Length = 168 Back     alignment and structure
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain Length = 177 Back     alignment and structure
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd Length = 670 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 3e-68
1spv_A184 Putative polyprotein/phosphatase; structural genom 5e-68
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 1e-65
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 7e-65
2x47_A235 Macro domain-containing protein 1; signaling prote 1e-64
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 3e-63
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 3e-62
1vhu_A211 Hypothetical protein AF1521; structural genomics, 4e-62
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 9e-59
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 4e-58
3gqe_A168 Non-structural protein 3; macro domain, X domain, 1e-56
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 1e-56
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 1e-54
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 4e-53
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 6e-53
2vri_A174 Non-structural protein 3; RNA replication, nucleot 7e-52
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 1e-32
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 4e-14
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 6e-13
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
 Score =  207 bits (528), Expect = 3e-68
 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 8/155 (5%)

Query: 59  SVTMSFSSDQRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADG 118
           +  + F S  +       L+    L++ +GD+ +  VD     +VN +NE +   GG   
Sbjct: 15  TENLYFQSMGQKCFSRTVLAPGVVLIVQQGDLARLPVD----VVVNASNEDLKHYGGLAA 70

Query: 119 AIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEA 178
           A+ +AAGPEL+  C ++  V+ E R   G A I+   KLP  HVIH VGP +     P  
Sbjct: 71  ALSKAAGPELQADCDQI--VKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRC 128

Query: 179 S--LRNAYKNSLSVAKENNIQYIAFTAISCGVYGY 211
              LR A + SL +A++   + IA  AIS GV+G+
Sbjct: 129 VYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGF 163
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 100.0
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 100.0
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 100.0
2vri_A174 Non-structural protein 3; RNA replication, nucleot 100.0
4gua_A 670 Non-structural polyprotein; viral precursor polypr 99.97
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.95
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.95
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.93
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 97.63
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3e-40  Score=280.72  Aligned_cols=135  Identities=36%  Similarity=0.541  Sum_probs=123.6

Q ss_pred             eeecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcc
Q 028011           74 HFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITP  153 (215)
Q Consensus        74 ~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~  153 (215)
                      .+.+.++.+|.||+||||++++    |||||+||+.|.+++||++||++++|++|++||+++++.  .+.+++|++++|+
T Consensus        30 ~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~  103 (214)
T 3q6z_A           30 RTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATISK  103 (214)
T ss_dssp             EEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEEEE
T ss_pred             EEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEEEc
Confidence            4566778999999999999976    999999999999999999999999999999999987643  2489999999999


Q ss_pred             CCCCCCceEEEEecccccCCCC--hHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011          154 GFKLPASHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL  214 (215)
Q Consensus       154 a~~L~~k~IIHaVgP~~~~~~~--~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~  214 (215)
                      +|+||||||||+|||.|+.+..  +.+.|++||++||++|++++++|||||+||||+||||++
T Consensus       104 ~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~  166 (214)
T 3q6z_A          104 AGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLG  166 (214)
T ss_dssp             CTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred             CCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHH
Confidence            9999999999999999987542  357999999999999999999999999999999999975
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 215
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 5e-36
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 2e-35
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 4e-35
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 3e-33
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 6e-33
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 3e-23
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  123 bits (309), Expect = 5e-36
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)

Query: 83  LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEV 142
           L + + DI     D    A+V+P N     GG     + +  G E  EA  ++   +   
Sbjct: 16  LQVVQADIASIDSD----AVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLEL--RKKNG 69

Query: 143 RCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202
              +  A ++ G  LPA  VIH   P++ +D   E  L    KN L++A +  ++ IAF 
Sbjct: 70  PLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCEEL-LEKTVKNCLALADDRKLKSIAFP 128

Query: 203 AISCGVYGY 211
           +I  G  G+
Sbjct: 129 SIGSGRNGF 137
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 100.0
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 99.97
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.93
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.86
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-36  Score=250.88  Aligned_cols=131  Identities=28%  Similarity=0.454  Sum_probs=120.5

Q ss_pred             cCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCcHHHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEccCCC
Q 028011           77 LSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK  156 (215)
Q Consensus        77 ~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaNs~l~~~gGV~~aI~~~aG~~L~~e~~~~~~~~~~~~l~~G~~~iT~a~~  156 (215)
                      +-.|.+|+|++|||+++++    |||||++|+++.+++|++++|++++|++|++||+++.+.+  +++++|++++|++|+
T Consensus        10 ~~~~~~i~i~~GDIt~~~~----DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~--~~~~~g~~~vT~~~~   83 (188)
T d1yd9a1          10 LFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKN--GPLEVAGAAVSAGHG   83 (188)
T ss_dssp             CTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH--CSCCTTCEEEEECTT
T ss_pred             cccCCEEEEEeCCcCcCCC----CEEEECCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHhc--cccCCCCeeecccCC
Confidence            3347899999999999876    9999999999999999999999999999999998876432  478999999999999


Q ss_pred             CCCceEEEEecccccCCCChHHHHHHHHHHHHHHHHHCCCcEEEECcccccCCCccCC
Q 028011          157 LPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLFL  214 (215)
Q Consensus       157 L~~k~IIHaVgP~~~~~~~~~~~L~~~y~~~L~~a~~~~ikSIAfP~IgTG~~g~P~~  214 (215)
                      |||+||||+|+|.|+.+ ...+.|++||++||+.|++++++|||||+||||++|||++
T Consensus        84 L~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~p~~  140 (188)
T d1yd9a1          84 LPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQ  140 (188)
T ss_dssp             SSSSEEEEECCCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHH
T ss_pred             CCceEEeeeccccCCCc-chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCCCHH
Confidence            99999999999999875 5668999999999999999999999999999999999975
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure