Citrus Sinensis ID: 028018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV
Secondary Structure (PSIPRED)
cccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccEEEEEccccccccHHccccccccHHcccccEEEEccccccEEEEEEEccEEEEEccccccEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHEEccccccEEEEEEEEccEEEEEccccEEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
mnqqqadhqietkassethhmqqqqephssdyapypkidpndvapppqnwsnvstatgpapinesaattmpaesnpyvspspiepsssknkLESVKGALSNWGKKAAEATKRAEDLAGNMwqhlktgpsladAAVGRIAQRTKVLAEGGYEKIFrqsfdtvpeeQLLKTYACYlstsagpvVGVLYLSTAklafcsddplsykvgdetqwsyykv
Flexible Loop (DISEMBL)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAfcsddplsykvgdetqwsyykv
Low Complexity Region (SEG)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV
Disordered region (IsUnstruct)
*********************************************************************************************************************GNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYY**
Disordered Region (DISOPRED)
******************************************************************************************************************DLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV
Disordered Region (DISEMBL)
******************************DYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTM*****************************************RAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV
Disordered Region (DISPRO)
***************************************************************************PYV*PSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q9SE96	259	GEM-like protein 1 OS=Ara	yes	no	0.809	0.671	0.691	1e-64
Q8S8F8	299	GLABRA2 expression modula	no	no	0.655	0.471	0.706	6e-57
Q9M063	239	Putative GEM-like protein	no	no	0.674	0.606	0.580	7e-42
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.786	0.621	0.404	7e-33
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.655	0.605	0.412	8e-28
Q9FMW4	219	Putative GEM-like protein	no	no	0.567	0.557	0.350	2e-15
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.506	0.5	0.370	4e-15
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.544	0.527	0.323	2e-14
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.4	0.409	0.402	2e-13

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/188 (69%), Positives = 151/188 (80%), Gaps = 14/188 (7%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HSSDYAPYPK+DP DV PP          TG      +AATTMPAESNPYVSPSP    +
Sbjct: 28  HSSDYAPYPKLDPTDVTPP----PPQPIPTG------AAATTMPAESNPYVSPSP----A 73

Query: 88  SKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 147
            +N ++SVK  L  WGK AA+ATK+AEDLAGN WQHLKTGPS+ADAAV RIAQ TK+LAE
Sbjct: 74  PRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAE 133

Query: 148 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 207
           GGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV+GV+YLST KLAF SD+PLSYK G++
Sbjct: 134 GGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQ 193

Query: 208 TQWSYYKV 215
           T WSYYKV
Sbjct: 194 TLWSYYKV 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  220 bits (560), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 121/143 (84%), Gaps = 2/143 (1%)

Query: 75  NPYVSPSPIEPS--SSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLAD 132
           NPY++ SP E S  S K+ +E+VKG L  WGK+ AEA K+ E LAGN WQHL+T PS AD
Sbjct: 96  NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155

Query: 133 AAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKL 192
           AA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQLL ++ACYLSTSAGPV+GVLY+S+AKL
Sbjct: 156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215

Query: 193 AFCSDDPLSYKVGDETQWSYYKV 215
           A+CSD+PLSYK GD+T+WSYYKV
Sbjct: 216 AYCSDNPLSYKNGDQTEWSYYKV 238

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  170 bits (430), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 113/155 (72%), Gaps = 10/155 (6%)

Query: 49  NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKA 106
           +W+    +  PAP  ++ +++  A SNPYV+ +P E S  S K  +ESVKG L  WG++ 
Sbjct: 29  HWNPELVSESPAPDEKALSSSSAARSNPYVARAPTETSDASLKETMESVKGVLGRWGRRV 88

Query: 107 AEATKRAEDLAGNMWQH-LKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQ 165
            EA  +AE LAGN WQH L+       AA+GRIAQ TKVLAEGGYEKIFRQ+F+TVPEEQ
Sbjct: 89  GEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQ 141

Query: 166 LLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPL 200
           L  ++ACYLSTSAGPV+GVLY+STAKLA+CSD  L
Sbjct: 142 LQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  140 bits (353), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 19/188 (10%)

Query: 39  DPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN-----PYVSPSPIEPSSSK 89
           +P+  +P  + W         AP+    N+ AA  +  ++      PYV  SP+E  ++ 
Sbjct: 28  EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTN 87

Query: 90  NKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGG 149
           N LE V G    W +KA       E +A N+W +LKTGPS+++ A G++    K + +GG
Sbjct: 88  NPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGG 140

Query: 150 YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV--GDE 207
           +E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AFCSD PL +    G E
Sbjct: 141 FESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQE 200

Query: 208 TQWSYYKV 215
           + WSYY+V
Sbjct: 201 S-WSYYRV 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 91/143 (63%), Gaps = 2/143 (1%)

Query: 75  NPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAA 134
           NPYV  +    +S K   + V   L+  GKK  +AT++AE L G +  HLK  PS++DAA
Sbjct: 29  NPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAA 88

Query: 135 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAF 194
           + R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++AF
Sbjct: 89  MARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAF 148

Query: 195 CSDDPLSY--KVGDETQWSYYKV 215
           CSD  +      G     +YYKV
Sbjct: 149 CSDYAIRLPSSAGGNGVAAYYKV 171

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 12/134 (8%)

Query: 85  PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKV 144
           P+SSK    + KG       K+    K+ +     +    K GP L +    +++   ++
Sbjct: 36  PTSSKFSFLTGKG-------KSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARI 88

Query: 145 LAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 204
           L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV
Sbjct: 89  LQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSER--SIKV 146

Query: 205 GD---ETQWSYYKV 215
                E    +YKV
Sbjct: 147 ASPQGELNRVHYKV 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 7/116 (6%)

Query: 85  PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKV 144
           P+SSK    + KG      KK    T  A D         K GP L +    +++   K+
Sbjct: 36  PTSSKVSYLTGKGKSMLRKKKTDSFTNGARD-------QDKLGPKLTETVKRKLSLGAKI 88

Query: 145 LAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPL 200
           L  GG EKI+++ F    +E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+  +
Sbjct: 89  LQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSI 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 13/130 (10%)

Query: 71  PAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSL 130
           PA  N +  P+    SS K++  +VK  L           K+ +     +    K  P L
Sbjct: 27  PASFNKFRVPA----SSKKSEQSNVKSILKR---------KKTDGFTNGVRDQSKIRPKL 73

Query: 131 ADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTA 190
            +    +++   ++L  GG EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+ 
Sbjct: 74  TETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSK 133

Query: 191 KLAFCSDDPL 200
           K+AFCS+  +
Sbjct: 134 KMAFCSERSI 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 6/92 (6%)

Query: 125 KTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGV 184
           K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+ G + G+
Sbjct: 61  KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGL 120

Query: 185 LYLSTAKLAFCSDDPLSYKV----GDETQWSY 212
           L++S+ K+AFCS+   S KV    GD T+  Y
Sbjct: 121 LFISSKKIAFCSER--SIKVTSPQGDLTRVHY 150

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
224084586	294	predicted protein [Populus trichocarpa]	1.0	0.731	0.673	1e-79
224063293	290	predicted protein [Populus trichocarpa]	0.981	0.727	0.706	2e-79
255545896	267	conserved hypothetical protein [Ricinus	0.962	0.775	0.714	2e-75
356515708	269	PREDICTED: GEM-like protein 1-like [Glyc	0.855	0.684	0.787	7e-75
255646007	269	unknown [Glycine max]	0.855	0.684	0.787	2e-74
449469813	302	PREDICTED: GEM-like protein 1-like [Cucu	0.911	0.649	0.645	1e-72
363808044	283	uncharacterized protein LOC100794961 [Gl	0.837	0.636	0.765	2e-70
153850916	284	GEM-like 1 [Vitis vinifera]	0.879	0.665	0.693	3e-70
225459150	284	PREDICTED: GEM-like 1 [Vitis vinifera]	0.879	0.665	0.688	1e-69
147802842	264	hypothetical protein VITISV_035993 [Viti	0.879	0.715	0.688	3e-69

>gi|224084586|ref|XP_002307347.1| predicted protein [Populus trichocarpa] gi|222856796|gb|EEE94343.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/236 (67%), Positives = 187/236 (79%), Gaps = 21/236 (8%)

Query: 1   MNQQQADHQIETK--------ASSETHHMQQQQ--EPHSSDYAPYPKIDPNDVAPPPQNW 50
           MNQ+Q  H+ +TK          SE H   + +  +PH++DYAPYPK+DP DVAPP  NW
Sbjct: 1   MNQKQDPHEDQTKKPAPSSSDLESEKHVEVKDKISDPHTTDYAPYPKLDPQDVAPPLDNW 60

Query: 51  SNVSTAT-----------GPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGAL 99
           +NVS  +           G  PI  +  TTMPA+SNPYVSP+P+ PSSSKNK+E+VK  L
Sbjct: 61  ANVSMGSTTLSNPAGATQGSPPIAGTTVTTMPADSNPYVSPAPVAPSSSKNKMEAVKDVL 120

Query: 100 SNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFD 159
             WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIFRQ+F+
Sbjct: 121 GKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFE 180

Query: 160 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
           TVPEEQL+KT+ACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSYK+G++T+WSYYKV
Sbjct: 181 TVPEEQLVKTFACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYKIGEQTEWSYYKV 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063293|ref|XP_002301081.1| predicted protein [Populus trichocarpa] gi|222842807|gb|EEE80354.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/218 (70%), Positives = 182/218 (83%), Gaps = 7/218 (3%)

Query: 5   QADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTAT------- 57
           Q+   +E +  +E     +    H+SDYAPYPK+DP DVAP P+NW+N+ST +       
Sbjct: 15  QSPSDLEPQKLAEVEDKYKNSNSHTSDYAPYPKLDPKDVAPSPENWANLSTGSTTQSKPP 74

Query: 58  GPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLA 117
           GP+PI  +AATTMPAESNPYVSP P+ PSSSKN +E+VK  L  WGKKAAEATK+AEDLA
Sbjct: 75  GPSPIAGTAATTMPAESNPYVSPGPVAPSSSKNTVEAVKDVLGKWGKKAAEATKKAEDLA 134

Query: 118 GNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTS 177
           GNMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEE+L+KT+ACYLSTS
Sbjct: 135 GNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEKLVKTFACYLSTS 194

Query: 178 AGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
           AGPV+GVLYLSTAKLAFCSD+PLSYKVG+++QWSYYKV
Sbjct: 195 AGPVMGVLYLSTAKLAFCSDNPLSYKVGEQSQWSYYKV 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545896|ref|XP_002514008.1| conserved hypothetical protein [Ricinus communis] gi|223547094|gb|EEF48591.1| conserved hypothetical protein [Ricinus communis]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/214 (71%), Positives = 176/214 (82%), Gaps = 7/214 (3%)

Query: 2   NQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAP 61
           NQQQ     +  A S  H  +Q   PH+ DYAPYPK+DP DV+PP +NW+    A     
Sbjct: 3   NQQQVIDDTKKPADSPEHDNKQHNHPHTLDYAPYPKLDPIDVSPPQENWAVPPPAE---- 58

Query: 62  INESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMW 121
              +AATTMPAESNPYVSP+P+ PSSSKNK+++VK  L  WGKKAAEATK+AEDLAGNMW
Sbjct: 59  ---AAATTMPAESNPYVSPAPVAPSSSKNKMDAVKDVLGKWGKKAAEATKKAEDLAGNMW 115

Query: 122 QHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPV 181
           QHLKTGPS ADAAVGRIAQ+TKVLAEGGYEK+F+QSF+TVPEEQL KTYACYLSTSAGPV
Sbjct: 116 QHLKTGPSFADAAVGRIAQQTKVLAEGGYEKVFQQSFETVPEEQLQKTYACYLSTSAGPV 175

Query: 182 VGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
           +GVLYLSTAKLAFCSD+PLSYK G++TQ+SYYKV
Sbjct: 176 IGVLYLSTAKLAFCSDNPLSYKNGEQTQYSYYKV 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515708|ref|XP_003526540.1| PREDICTED: GEM-like protein 1-like [Glycine max]

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 164/188 (87%), Gaps = 4/188 (2%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HS DYAPYPK+DP DVAPP Q  +  S A    PI+E AATTMP +SNPYV+P+P+  SS
Sbjct: 30  HSGDYAPYPKLDPTDVAPPQQPLNTESRA----PISEDAATTMPKDSNPYVTPAPVTASS 85

Query: 88  SKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 147
           +K  L+SVK  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAE
Sbjct: 86  TKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAE 145

Query: 148 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 207
           GGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+VGD+
Sbjct: 146 GGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGDQ 205

Query: 208 TQWSYYKV 215
           TQWSYYKV
Sbjct: 206 TQWSYYKV 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646007|gb|ACU23491.1| unknown [Glycine max]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 163/188 (86%), Gaps = 4/188 (2%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HS DYAPYPK+DP DVAPP Q  +  S A    PI+E AATTMP +SNPYV+P+P   SS
Sbjct: 30  HSGDYAPYPKLDPTDVAPPQQPLNTESRA----PISEDAATTMPKDSNPYVTPAPATASS 85

Query: 88  SKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 147
           +K  L+SVK  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAE
Sbjct: 86  TKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAE 145

Query: 148 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 207
           GGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+VGD+
Sbjct: 146 GGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGDQ 205

Query: 208 TQWSYYKV 215
           TQWSYYKV
Sbjct: 206 TQWSYYKV 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469813|ref|XP_004152613.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus] gi|449527647|ref|XP_004170821.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 140/217 (64%), Positives = 162/217 (74%), Gaps = 21/217 (9%)

Query: 20  HMQQQQEPHSSDYAPYPKIDPNDVAPPP--QNWSNVSTAT-----------------GPA 60
           H        S DY+PYPK+DP+DVAPPP  +NW+ V   +                   A
Sbjct: 25  HTDPDTNHRSGDYSPYPKLDPSDVAPPPLPENWTTVPMGSQPQNPPPPPPQTQPNSEARA 84

Query: 61  PINESAATTMPAESNPYVS--PSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAG 118
           PI+E  ATT+P E+NPYVS  P+P  PSSSK+ ++SVK  L  WGK+A EATK+AEDLAG
Sbjct: 85  PISEGNATTLPTEANPYVSAAPAPGNPSSSKHTMDSVKVMLGRWGKRAVEATKKAEDLAG 144

Query: 119 NMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSA 178
           NMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIFRQ+F+  PEE+L K YACYLSTSA
Sbjct: 145 NMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFENTPEEKLQKAYACYLSTSA 204

Query: 179 GPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
           GPV+G LY+STAKLAFCSD+PLSYKVG+ETQWS YKV
Sbjct: 205 GPVMGTLYISTAKLAFCSDNPLSYKVGEETQWSLYKV 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808044|ref|NP_001242211.1| uncharacterized protein LOC100794961 [Glycine max] gi|255635924|gb|ACU18309.1| unknown [Glycine max]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/188 (76%), Positives = 161/188 (85%), Gaps = 8/188 (4%)

Query: 29  SSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSS 88
           ++DYAPYPK+DP DVAPP    S        API+E AATTMP +SNPYV+P+P+  SS+
Sbjct: 47  TADYAPYPKLDPTDVAPPLNTESR-------APISEDAATTMPKDSNPYVTPAPVPASST 99

Query: 89  KNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEG 148
           K  L+SVK  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAEG
Sbjct: 100 KTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEG 159

Query: 149 GYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV-GDE 207
           GYEKIFRQ+F+TVP EQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+V GD+
Sbjct: 160 GYEKIFRQTFETVPGEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGGDQ 219

Query: 208 TQWSYYKV 215
           TQWSYYKV
Sbjct: 220 TQWSYYKV 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|153850916|gb|ABS52645.1| GEM-like 1 [Vitis vinifera]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/209 (69%), Positives = 168/209 (80%), Gaps = 20/209 (9%)

Query: 27  PHSSDYAPYPKIDPNDVAPPPQNWSNVSTAT--------------------GPAPINESA 66
           P S+DYAPYPK+DPNDVAPP ++W+ V+ ++                    GPAPI  ++
Sbjct: 19  PPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNS 78

Query: 67  ATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 126
           ATTMP ESNPY+S SP   SS KNK++SVK  L  WGKKAAEATK+AEDLAGNMWQHLKT
Sbjct: 79  ATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKT 138

Query: 127 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 186
           GPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEEQL K+YACYLSTSAGPV+G+LY
Sbjct: 139 GPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILY 198

Query: 187 LSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
           LST KLAFCSD PLSYKVG++T+WSYYKV
Sbjct: 199 LSTEKLAFCSDSPLSYKVGEQTEWSYYKV 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459150|ref|XP_002285708.1| PREDICTED: GEM-like 1 [Vitis vinifera]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/209 (68%), Positives = 167/209 (79%), Gaps = 20/209 (9%)

Query: 27  PHSSDYAPYPKIDPNDVAPPPQNWSNVSTAT--------------------GPAPINESA 66
           P S+DYAPYPK+DPNDVAPP ++W+ V+ ++                    GPAPI  ++
Sbjct: 19  PPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNS 78

Query: 67  ATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 126
           ATTMP ESNPY+S SP   SS KNK++SVK  L  WGKKAAEATK+AEDLAGNMWQHLK 
Sbjct: 79  ATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKM 138

Query: 127 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 186
           GPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEEQL K+YACYLSTSAGPV+G+LY
Sbjct: 139 GPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILY 198

Query: 187 LSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
           LST KLAFCSD PLSYKVG++T+WSYYKV
Sbjct: 199 LSTEKLAFCSDSPLSYKVGEQTEWSYYKV 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802842|emb|CAN75152.1| hypothetical protein VITISV_035993 [Vitis vinifera]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/209 (68%), Positives = 167/209 (79%), Gaps = 20/209 (9%)

Query: 27  PHSSDYAPYPKIDPNDVAPPPQNWSNVSTAT--------------------GPAPINESA 66
           P S+DYAPYPK+DPNDVAPP ++W+ V+ ++                    GPAPI  ++
Sbjct: 44  PPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNS 103

Query: 67  ATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 126
           ATTMP ESNPY+S SP   SS KNK++SVK  L  WGKKAAEATK+AEDLAGNMWQHLK 
Sbjct: 104 ATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKX 163

Query: 127 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 186
           GPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEEQL K+YACYLSTSAGPV+G+LY
Sbjct: 164 GPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILY 223

Query: 187 LSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
           LST KLAFCSD PLSYKVG++T+WSYYKV
Sbjct: 224 LSTEKLAFCSDSPLSYKVGEQTEWSYYKV 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.916	0.760	0.630	6.5e-67
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.772	0.555	0.639	4.8e-55
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.846	0.669	0.389	1.5e-33
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.651	0.600	0.430	2.2e-27
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.641	0.630	0.342	7.7e-16
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.641	0.621	0.328	2.3e-14
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.618	0.633	0.315	3e-14
UNIPROTKB|E1C0A7	673	POU6F2 "Uncharacterized protei	0.483	0.154	0.296	0.00074

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 135/214 (63%), Positives = 163/214 (76%)

Query:     3 QQQADH-QIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAP 61
             Q+  DH +I +  ++ +     +   HSSDYAPYPK+DP DV PPP           P P
Sbjct:     4 QENHDHGRISSTPAAASE--PSKAAAHSSDYAPYPKLDPTDVTPPPPQ---------PIP 52

Query:    62 INESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMW 121
                +AATTMPAESNPYVSPSP    + +N ++SVK  L  WGK AA+ATK+AEDLAGN W
Sbjct:    53 TG-AAATTMPAESNPYVSPSP----APRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFW 107

Query:   122 QHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPV 181
             QHLKTGPS+ADAAV RIAQ TK+LAEGGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV
Sbjct:   108 QHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPV 167

Query:   182 VGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
             +GV+YLST KLAF SD+PLSYK G++T WSYYKV
Sbjct:   168 LGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYYKV 201

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 108/169 (63%), Positives = 134/169 (79%)

Query:    49 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKA 106
             +WS    +    P ++ AA++  A SNPY++ SP E S  S K+ +E+VKG L  WGK+ 
Sbjct:    71 HWSPELVSGSQEP-DQKAASSSSAGSNPYIARSPAETSDASLKDTMETVKGVLGRWGKRV 129

Query:   107 AEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQL 166
             AEA K+ E LAGN WQHL+T PS ADAA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQL
Sbjct:   130 AEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQL 189

Query:   167 LKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKV 215
             L ++ACYLSTSAGPV+GVLY+S+AKLA+CSD+PLSYK GD+T+WSYYKV
Sbjct:   190 LNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKV 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 79/203 (38%), Positives = 116/203 (57%)

Query:    24 QQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN---- 75
             Q++P + +    P  +P+  +P  + W         AP+    N+ AA  +  ++     
Sbjct:    15 QEQPKTLETEHQP--EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQY 72

Query:    76 -PYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAA 134
              PYV  SP+E  ++ N LE V G    W +KA       E +A N+W +LKTGPS+++ A
Sbjct:    73 QPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETA 125

Query:   135 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAF 194
              G++    K + +GG+E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AF
Sbjct:   126 WGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAF 185

Query:   195 CSDDPLSYKV--GDETQWSYYKV 215
             CSD PL +    G E+ WSYY+V
Sbjct:   186 CSDRPLYFTAPSGQES-WSYYRV 207

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/144 (43%), Positives = 93/144 (64%)

Query:    75 NPYVS-PSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADA 133
             NPYV   SP   S  ++K + V   L+  GKK  +AT++AE L G +  HLK  PS++DA
Sbjct:    29 NPYVHITSPTSASDKRSK-DKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDA 87

Query:   134 AVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLA 193
             A+ R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++A
Sbjct:    88 AMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIA 147

Query:   194 FCSDDP--LSYKVGDETQWSYYKV 215
             FCSD    L    G     +YYKV
Sbjct:   148 FCSDYAIRLPSSAGGNGVAAYYKV 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 51/149 (34%), Positives = 80/149 (53%)

Query:    76 PYVSPSP---IEPSSSKNKLESVKGALSNW--GK-KAAEATKRAEDLAGNMWQHLKTGPS 129
             P V  SP   +   +S NKL+    +  ++  GK K+    K+ +     +    K GP 
Sbjct:    14 PAVKTSPAGYLPDPASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPK 73

Query:   130 LADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLST 189
             L +    +++   ++L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+
Sbjct:    74 LTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISS 133

Query:   190 AKLAFCSDDPLSYKVGD---ETQWSYYKV 215
              K+AFCS+   S KV     E    +YKV
Sbjct:   134 KKIAFCSER--SIKVASPQGELNRVHYKV 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 48/146 (32%), Positives = 75/146 (51%)

Query:    72 AESNP--YVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPS 129
             A++ P  Y+ P P   +  +    S K   SN   K+    K+ +     +    K  P 
Sbjct:    16 AKATPVGYL-PDPASFNKFRVPASSKKSEQSN--VKSILKRKKTDGFTNGVRDQSKIRPK 72

Query:   130 LADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLST 189
             L +    +++   ++L  GG EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+
Sbjct:    73 LTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISS 132

Query:   190 AKLAFCSDDPLSYKVGDETQWSYYKV 215
              K+AFCS+   S KV D  Q    +V
Sbjct:   133 KKMAFCSER--SIKV-DSPQGDIIRV 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 46/146 (31%), Positives = 77/146 (52%)

Query:    76 PYVSPSPI----EPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLA 131
             P V+ +P+    +P+S  NKL+     +    K +    K+ +          K GP L 
Sbjct:    14 PAVNTAPVGYLPDPASI-NKLQ-----IPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLT 67

Query:   132 DAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAK 191
             +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+ G + G+L++S+ K
Sbjct:    68 ETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKK 127

Query:   192 LAFCSDDPLSYKV--GDETQWSYYKV 215
             +AFCS+  +      GD T+  +YKV
Sbjct:   128 IAFCSERSIKVTSPQGDLTR-VHYKV 152

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|E1C0A7 POU6F2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 0.00074, P = 0.00074
 Identities = 32/108 (29%), Positives = 50/108 (46%)

Query:     3 QQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNV-STATGPAP 61
             QQQ   Q + ++  +    QQ Q P  S     P+  P   APP QN +   S +  P+ 
Sbjct:   187 QQQQGQQQQQQSQQQQQQTQQTQTPQPSQQTQQPQPQPQPSAPPQQNQTQPQSQSQQPSV 246

Query:    62 INESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEA 109
                S++   P++S  +  PSP+   +S N L+ V   L++    AA A
Sbjct:   247 PQSSSSPQKPSQSPGHGLPSPL---TSPNPLQLVNNPLASQAAAAAAA 291


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.123   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      215       215   0.00087  112 3  11 23  0.49    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.97u 0.10s 29.07t   Elapsed:  00:00:01
  Total cpu time:  28.97u 0.10s 29.07t   Elapsed:  00:00:01
  Start:  Thu May  9 22:32:53 2013   End:  Thu May  9 22:32:54 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE96	GEML1_ARATH	No assigned EC number	0.6914	0.8093	0.6718	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	2e-41
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	6e-11
pfam02893	60	pfam02893, GRAM, GRAM domain	2e-09
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	9e-06
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	0.003

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  136 bits (345), Expect = 2e-41
 Identities = 43/72 (59%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 145 LAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 204
           L EGG EK+FRQ+F   P E+LLK   CYLST+AGPV G L++STAK+AFCSD PLS+  
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 205 -GDETQWSYYKV 215
              +   SYYKV
Sbjct: 61  PSGQLVRSYYKV 72

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 55.7 bits (135), Expect = 6e-11
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 162 PEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD 206
            EE+L+  Y+CYLS   GPV G LY+S  +L F S+ P       
Sbjct: 4   EEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGKLTKVV 47

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 162 PEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 204
           PEE+L+  Y+CYL     PV G LYL+  +L F SD      V
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTV 45

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 163 EEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 204
            E+   TY C      GPV G LYL+  +L F S +  S   
Sbjct: 1   LEKKDVTYICPFHV--GPVEGTLYLTNYRLYFKSKERDSPTE 40

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 154 FRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLS 201
           FR+ F     E+LL  Y  YL     PV G LY+S     F S  P +
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCFRSLLPGT 49

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	98.83
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	98.54
PF14470	96	bPH_3: Bacterial PH domain	86.92
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	80.83

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=98.83  E-value=1.8e-09  Score=75.01  Aligned_cols=50  Identities=38%  Similarity=0.572  Sum_probs=32.6

Q ss_pred             ceeeecccCCcchhhhcccceeeecCCcceeeeEEEecCcEEEeeCCCcc
Q 028018          152 KIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLS  201 (215)
Q Consensus       152 kiFkQ~F~v~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSDrpl~  201 (215)
                      +-|++.|...++|+|...|.|+|..+.+|+.|.||||+.+|.|+|+....
T Consensus         1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~   50 (69)
T PF02893_consen    1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGS   50 (69)
T ss_dssp             ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS
T ss_pred             CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCC
Confidence            35999999999999999999999999999999999999999999976543

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=98.54  E-value=6.8e-08  Score=65.71  Aligned_cols=41  Identities=49%  Similarity=0.808  Sum_probs=36.8

Q ss_pred             CCcchhhhcccceeeecCCcceeeeEEEecCcEEEeeCCCcc
Q 028018          160 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLS  201 (215)
Q Consensus       160 v~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSDrpl~  201 (215)
                      ..++|+|...|.|||+ +.+|+.|.||||+.+|.|+|+.+-.
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~   42 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGK   42 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCC
Confidence            4589999999999999 6799999999999999999976543

>PF14470 bPH_3: Bacterial PH domain

Probab=86.92  E-value=0.79  Score=32.57  Aligned_cols=39  Identities=21%  Similarity=0.177  Sum_probs=34.4

Q ss_pred             CcchhhhcccceeeecCCcceeeeEEEecCcEEEeeCCC
Q 028018          161 VPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDP  199 (215)
Q Consensus       161 ~p~EkLlKa~aCYLSTsaGPVaG~LyiST~kvAFCSDrp  199 (215)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-..
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~   40 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGM   40 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEccc
Confidence            579999999999888777888999999999999998753

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=80.83  E-value=1.2  Score=33.16  Aligned_cols=54  Identities=19%  Similarity=0.259  Sum_probs=43.1

Q ss_pred             HHhhhhhhhHHHhHhhhhhccccccccccCCChHHHHHHHHhhhhHHHhhccccceeeecc
Q 028018           98 ALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSF  158 (215)
Q Consensus        98 ~ln~~gkk~~e~trKae~~a~~iw~Hlk~gpsiseta~GKLslGaKil~eGG~ekiFkQ~F  158 (215)
                      +|++|||.       .-...-++-|-|++.|+=+-.+.--|..++.-|.+||-++||--.|
T Consensus         6 r~t~~Gr~-------~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPMy   59 (67)
T PF08498_consen    6 RMTWLGRF-------ITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPMY   59 (67)
T ss_pred             eccHHHHH-------HHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCchh
Confidence            36778875       2333345568899999999999999999999999999999996543

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	80.57

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=80.57  E-value=1.2  Score=42.30  Aligned_cols=41  Identities=24%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             cccCCcchhhhcccc--eeeecCCcceeeeEEEecCcEEEeeC
Q 028018          157 SFDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSD  197 (215)
Q Consensus       157 ~F~v~p~EkLlKa~a--CYLSTsaGPVaG~LyiST~kvAFCSD  197 (215)
                      -|...|||.++..-.  =|+.--.|++.|+|||++-||.|.++
T Consensus         6 ~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~   48 (528)
T 1zsq_A            6 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM   48 (528)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred             CCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEcc
Confidence            366789999985521  15555568999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	88.06

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.19  Score=36.86  Aligned_cols=38  Identities=26%  Similarity=0.388  Sum_probs=28.5

Q ss_pred             CCcchhhhcc--cceeeecCCcceeeeEEEecCcEEEeeC
Q 028018          160 TVPEEQLLKT--YACYLSTSAGPVVGVLYLSTAKLAFCSD  197 (215)
Q Consensus       160 v~p~EkLlKa--~aCYLSTsaGPVaG~LyiST~kvAFCSD  197 (215)
                      ..|||.+.-.  -.=|+..-.||+-|+|||+|-|+-|-++
T Consensus         5 llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~   44 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM   44 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred             cCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcC
Confidence            4577766522  2346666789999999999999999763